129 results on '"Gastebois A"'
Search Results
2. On the detection of nanoparticle cloud migration by a resonant photonic surface signal towards sedimentation velocity measurements
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L. Garnier, J. Gastebois, H. Lhermite, V. Vié, A. Saint-Jalmes, H. Cormerais, E. Gaviot, and B. Bêche
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Nanoparticle migration ,Fragmented material ,Sedimentation rate ,Integrated photonic devices ,Surface resonant signal ,Real time signal processing ,Optics. Light ,QC350-467 - Abstract
Migration and sedimentation of solid particles in a liquid are physical phenomena involving accumulation of soft matter or decantation of fragmented matter. A thorough understanding together with relevant measurements are prerequisites regarding many fields, including medicine, galenic pharmacology, food processing, and the cosmetics industry. In this paper, we investigate the feasibility of monitoring and detecting the migration of a nanoparticle cloud with a resonant light probe. For this purpose, hybrid silicon/silica/UV210 organic integrated photonic racetrack resonators were patterned by thin film processes to be used as sensors measuring the outcome of the impact of a cloud of nanoparticles, the dynamic migration plus sedimentation phenomenon of the nanoparticle cloud in water. A broadband superluminescent diode has been used for the excitation. Then, the spectral characteristics of the resonant guided modes have been analyzed, considering the observed changes while tracking the free spectral range of the transduced comb spectra as a function of time. The way to operate can be summarized as follows: Solutions based on spherical silica nanoparticles of fixed size are prepared and subjected to rheological measurements to obtain their respective viscosities. Next, a millimeter tank filled with water is conveniently placed on the active surface of the sensing chip, prior to the addition of one of the previously mentioned solutions. The series of spectra are acquired during the whole migration sequence and the transduced optical signal is then directly processed and treated by a specific code operated in real time by way of Lagrange interpolation polynomials. Collected data are then compared to a simple theoretical model describing the sedimentation of a spherical particle in water (Stokes' law). Eventually, the implementation of the device in a characterization platform and the development of a specific protocol allows a global treatment, whose description is followed by discussions on measurements and data. Consequently, after the impact of the drop containing the nanoparticles, the monitoring of a first phase regarding their fast cloud migration into the global study volume (with flow of matter plus vortex) eventually followed by their slow sedimentation, can be detected using such a resonant light probe. The overall duration of the first phase associated with sedimentation velocities is in the order of a few tens of µm/min for particles with submicron diameters (several hundreds of nanometers); a first attempt of comparison of this first phase with the results of the classic Stokes model would give a convergence of the values reaching between 9 and 19% for the sedimentation rates.
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- 2023
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3. A Speed-up Method for Numerical Simulations of Multi-strokes Cold Metallic Sheet Forming Processes
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Krairi, Anouar, Marmi, Jalil, Gastebois, Sabrina, Veldhuis, Mark, and Kott, Matthäus
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- 2020
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4. Temperature Dependent Friction Modelling: The Influence of Temperature on Product Quality
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Waanders, Daan, Marangalou, Javad Hazrati, Kott, Matthäus, Gastebois, Sabrina, and Hol, Johan
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- 2020
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5. Deciphering the Role of PIG1 and DHN-Melanin in Scedosporium apiospermum Conidia
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Hélène Guegan, Wilfried Poirier, Kevin Ravenel, Sarah Dion, Aymeric Delabarre, Dimitri Desvillechabrol, Xavier Pinson, Odile Sergent, Isabelle Gallais, Jean-Pierre Gangneux, Sandrine Giraud, and Amandine Gastebois
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Scedosporium apiospermum ,DHN-melanin ,cell wall ,PIG1 ,CRISPR-Cas9 ,RNA-seq ,Biology (General) ,QH301-705.5 - Abstract
Scedosporium apiospermum is a saprophytic filamentous fungus involved in human infections, of which the virulence factors that contribute to pathogenesis are still poorly characterized. In particular, little is known about the specific role of dihydroxynaphtalene (DHN)-melanin, located on the external layer of the conidia cell wall. We previously identified a transcription factor, PIG1, which may be involved in DHN-melanin biosynthesis. To elucidate the role of PIG1 and DHN-melanin in S. apiospermum, a CRISPR-Cas9-mediated PIG1 deletion was carried out from two parental strains to evaluate its impact on melanin biosynthesis, conidia cell-wall assembly, and resistance to stress, including the ability to survive macrophage engulfment. ΔPIG1 mutants did not produce melanin and showed a disorganized and thinner cell wall, resulting in a lower survival rate when exposed to oxidizing conditions, or high temperature. The absence of melanin increased the exposure of antigenic patterns on the conidia surface. PIG1 regulates the melanization of S. apiospermum conidia, and is involved in the survival to environmental injuries and to the host immune response, that might participate in virulence. Moreover, a transcriptomic analysis was performed to explain the observed aberrant septate conidia morphology and found differentially expressed genes, underlining the pleiotropic function of PIG1.
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- 2023
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6. Food transport in Reptilia: a comparative viewpoint
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Bels, Vincent, primary, Le Floch, Glenn, additional, Kirchhoff, Florence, additional, Gastebois, Gilbert, additional, Davenport, John, additional, and Baguette, Michel, additional
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- 2023
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7. The Glycosylphosphatidylinositol-Anchored Superoxide Dismutase of Scedosporium apiospermum Protects the Conidia from Oxidative Stress
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Cindy Staerck, Hajar Yaakoub, Patrick Vandeputte, Julie Tabiasco, Charlotte Godon, Amandine Gastebois, Sandrine Giraud, Thomas Guillemette, Alphonse Calenda, Yves Delneste, Maxime Fleury, and Jean-Philippe Bouchara
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Scedosporium apiospermum ,oxidative stress ,ROS ,GPI-anchored superoxide dismutase ,intracellular killing ,Biology (General) ,QH301-705.5 - Abstract
Scedosporium species are common fungal pathogens in patients with cystic fibrosis (CF). To colonize the CF lungs, fungi must cope with the host immune response, especially the reactive oxygen species (ROS) released by phagocytic cells. To this aim, pathogens have developed various antioxidant systems, including superoxide dismutases (SODs) which constitute the first-line protection against oxidative stress. Interestingly, one of the S. apiospermum SOD-encoding genes (SODD gene) exhibits a glycosylphosphatidylinositol (GPI) anchor-binding site and encodes a conidial-specific surface SOD. In this study, a SODDΔ mutant was engineered from a non-homologous end joining-deficient strain (KU70Δ) of S. apiospermum. Compared to its parent strain, the double mutant KU70Δ/SODDΔ exhibited increased susceptibility to various oxidizing agents and triazole antifungals. In addition, the loss of SodD resulted in an increased intracellular killing of the conidia by M1 macrophages derived from human blood monocytes, suggesting the involvement of this superoxide dismutase in the evasion to the host defenses. Nevertheless, one cannot disregard an indirect role of the enzyme in the synthesis or assembly of the cell wall components since transmission electron microscopic analysis revealed a thickening of the inner cell wall layer of the conidia. Further studies are needed to confirm the role of this enzyme in the pathogenesis of Scedosporium infections, including the production of a recombinant protein and study of its protective effect against the infection in a mouse model of scedosporiosis.
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- 2021
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8. Deciphering the Role of PIG1 and DHN-Melanin in Scedosporium apiospermum Conidia
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Guegan, Hélène, primary, Poirier, Wilfried, additional, Ravenel, Kevin, additional, Dion, Sarah, additional, Delabarre, Aymeric, additional, Desvillechabrol, Dimitri, additional, Pinson, Xavier, additional, Sergent, Odile, additional, Gallais, Isabelle, additional, Gangneux, Jean-Pierre, additional, Giraud, Sandrine, additional, and Gastebois, Amandine, additional
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- 2023
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9. Magnetocaloric properties of a novel ferromagnet Gd3Co4+xAl12−x (x = 0.50)
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Pasturel, Mathieu, Nasri, Nabil, Gastebois, Justine, Guizouarn, Thierry, Belgacem, Besma, Ben Hassen, Rached, and Tougait, Olivier
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- 2015
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10. Reinvestigation of the Ce–Co–Al ternary system: Isothermal section at 973 K
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Nasri, N., Gastebois, J., Pasturel, M., Belgacem, B., Péron, I., Gouttefangeas, F., Ben Hassen, R., Tougait, O., and Noël, H.
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- 2015
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11. Transcriptomic Insight in the Control of Legume Root Secondary Infection by the Sinorhizobium meliloti Transcriptional Regulator Clr
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Lan Zou, Amandine Gastebois, Céline Mathieu-Demazière, Fernando Sorroche, Catherine Masson-Boivin, Jacques Batut, and Anne-Marie Garnerone
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rhizobium ,legume ,symbiosis ,infection ,adenylate cyclase ,cAMP ,Microbiology ,QR1-502 - Abstract
The cAMP-dependent transcriptional regulator Clr of Sinorhizobium meliloti regulates the overall number of infection events on Medicago roots by a so-far unknown mechanism requiring smc02178, a Clr-target gene of unknown function. In order to shed light on the mode of action of Clr on infection and potentially reveal additional biological functions for Clr, we inventoried genomic Clr target genes by transcriptome profiling. We have found that Clr positively controls the synthesis of cAMP-dependent succinoglycan as well as the expression of genes involved in the synthesis of a so-far unknown polysaccharide compound. In addition, Clr activated expression of 24 genes of unknown function in addition to smc02178. Genes negatively controlled by Clr were mainly involved in swimming motility and chemotaxis. Functional characterization of two novel Clr-activated genes of unknown function, smb20495 and smc02177, showed that their expression was activated by the same plant signal as smc02178 ex planta. In planta, however, symbiotic expression of smc02177 proved independent of clr. Both smc02177 and smb20495 genes were strictly required for the control of secondary infection on M. sativa. None of the three smc02177, smc02178 and smb20495 genes were needed for plant signal perception. Altogether this work provides a refined view of the cAMP-dependent Clr regulon of S. meliloti. We specifically discuss the possible roles of smc02177, smc02178, smb20495 genes and other Clr-controlled genes in the control of secondary infection of Medicago roots.
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- 2017
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12. The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi
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Anaïs Hérivaux, Thomas Dugé de Bernonville, Christophe Roux, Marc Clastre, Vincent Courdavault, Amandine Gastebois, Jean-Philippe Bouchara, Timothy Y. James, Jean-Paul Latgé, Francis Martin, and Nicolas Papon
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Microbiology ,QR1-502 - Abstract
ABSTRACT Histidine kinases (HKs) are among the most prominent sensing proteins studied in the kingdom Fungi. Their distribution and biological functions in early diverging fungi (EDF), however, remain elusive. We have taken advantage of recent genomic resources to elucidate whether relationships between the occurrence of specific HKs in some EDF and their respective habitat/lifestyle could be established. This led to the unexpected discovery of fungal HKs that share a high degree of similarity with receptors for plant hormones (ethylene and cytokinin). Importantly, these phytohormone receptor homologs are found not only in EDF that behave as plant root symbionts or endophytes but also in EDF species that colonize decaying plant material. We hypothesize that these particular sensing proteins promoted the interaction of EDF with plants, leading to the conquest of land by these ancestral fungi.
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- 2017
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13. SUN Proteins Belong to a Novel Family of β-(1,3)-Glucan-modifying Enzymes Involved in Fungal Morphogenesis
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Gastebois, Amandine, Aimanianda, Vishukumar, Bachellier-Bassi, Sophie, Nesseir, Audrey, Firon, Arnaud, Beauvais, Anne, Schmitt, Christine, England, Patrick, Beau, Rémi, Prévost, Marie-Christine, d'Enfert, Christophe, Latgé, Jean-Paul, and Mouyna, Isabelle
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- 2013
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14. Major Sensing Proteins in Pathogenic Fungi: The Hybrid Histidine Kinase Family.
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Anaïs Hérivaux, Yee-Seul So, Amandine Gastebois, Jean-Paul Latgé, Jean-Philippe Bouchara, Yong-Sun Bahn, and Nicolas Papon
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Immunologic diseases. Allergy ,RC581-607 ,Biology (General) ,QH301-705.5 - Published
- 2016
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15. Temperature Dependent Friction Modelling
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J. Hol, Daan Waanders, Javad Hazrati Marangalou, Sabrina Gastebois, and Matthäus Kott
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0209 industrial biotechnology ,Materials science ,Mechanical engineering ,Forming processes ,02 engineering and technology ,Tribology ,Stamping ,Industrial and Manufacturing Engineering ,Hardened steel ,020303 mechanical engineering & transports ,020901 industrial engineering & automation ,0203 mechanical engineering ,Artificial Intelligence ,visual_art ,Spare part ,visual_art.visual_art_medium ,Lubrication ,Transient (oscillation) ,Sheet metal - Abstract
In the stamping of industrial parts, friction and lubrication play a key role in achieving high quality products and reducing scrap. Especially in the start-up phase of new production runs, transient effects can have a significant impact on the product quality. Before a steady-state production run is established, heating up of tools influence tribological conditions. This influences the performance of the forming operation and, consequently, the quality of the formed product. In the development process of new industrial parts, it is therefore crucial to accurately account for these transient effects in sheet metal forming simulations. This paper presents the modeling of the frictional behavior of two tribological systems as developed within the ASPECT project. The first tribology systems consist of a stainless steel with corresponding drawing oil and tool material. The sheet material of the second tribology system is a hot dip galvanized bake hardened steel. Subsequently, it is shown how temperature affects the frictional behavior of these tribology systems. Finally, generated friction models have been applied to a spare wheel well of Opel. The spare wheel well is modelled using a generally applicable approach to account for transient effects under industrial sheet metal forming process conditions. For varying temperature and tribological conditions, the spare wheel well can show cracks and differences in thinning and draw-in. This emphasizes the strong influence of transient effects on both part quality and the overall production stability.
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- 2020
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16. A Multifaceted Study of Scedosporium boydii Cell Wall Changes during Germination and Identification of GPI-Anchored Proteins.
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Sarah Ghamrawi, Amandine Gastebois, Agata Zykwinska, Patrick Vandeputte, Agnès Marot, Guillaume Mabilleau, Stéphane Cuenot, and Jean-Philippe Bouchara
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Medicine ,Science - Abstract
Scedosporium boydii is a pathogenic filamentous fungus that causes a wide range of human infections, notably respiratory infections in patients with cystic fibrosis. The development of new therapeutic strategies targeting S. boydii necessitates a better understanding of the physiology of this fungus and the identification of new molecular targets. In this work, we studied the conidium-to-germ tube transition using a variety of techniques including scanning and transmission electron microscopy, atomic force microscopy, two-phase partitioning, microelectrophoresis and cationized ferritin labeling, chemical force spectroscopy, lectin labeling, and nanoLC-MS/MS for cell wall GPI-anchored protein analysis. We demonstrated that the cell wall undergoes structural changes with germination accompanied with a lower hydrophobicity, electrostatic charge and binding capacity to cationized ferritin. Changes during germination also included a higher accessibility of some cell wall polysaccharides to lectins and less CH3/CH3 interactions (hydrophobic adhesion forces mainly due to glycoproteins). We also extracted and identified 20 GPI-anchored proteins from the cell wall of S. boydii, among which one was detected only in the conidial wall extract and 12 only in the mycelial wall extract. The identified sequences belonged to protein families involved in virulence in other fungi like Gelp/Gasp, Crhp, Bglp/Bgtp families and a superoxide dismutase. These results highlighted the cell wall remodeling during germination in S. boydii with the identification of a substantial number of cell wall GPI-anchored conidial or hyphal specific proteins, which provides a basis to investigate the role of these molecules in the host-pathogen interaction and fungal virulence.
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- 2015
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17. Circulating MiRNAs of 'Asian Indian Phenotype' Identified in Subjects with Impaired Glucose Tolerance and Patients with Type 2 Diabetes.
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Paramasivam Prabu, Sophie Rome, Chandrakumar Sathishkumar, Sankaramoorthy Aravind, Balakumar Mahalingam, Coimbatore Subramanian Shanthirani, Caroline Gastebois, Audrey Villard, Viswanathan Mohan, and Muthuswamy Balasubramanyam
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Medicine ,Science - Abstract
Several omics technologies are underway worldwide with an aim to unravel the pathophysiology of a complex phenotype such as type 2 diabetes mellitus (T2DM). While recent studies imply a clinically relevant and potential biomarker role of circulatory miRNAs in the etiology of T2DM, there is lack of data on this aspect in Indians--an ethnic population characterized to represent 'Asian Indian phenotype' known to be more prone to develop T2DM and cardiovascular disease than Europeans. We performed global serum miRNA profiling and the validation of candidate miRNAs by qRT-PCR in a cohort of subjects comprised of normal glucose tolerance (NGT), impaired glucose tolerance (IGT) and patients with T2DM. Our study revealed 4 differentially expressed miRNAs (miR-128, miR-130b-3p, miR-374a-5p, miR-423-5p) in subjects with IGT and T2DM patients compared to control subjects. They were positively or negatively correlated to cholesterol levels, HbA1C, HOMA-IR and fasting insulin. Interestingly, circulating level of miR-128 and miR-130b-3p were also altered in serum of diet-induced diabetic mice compared to control animals. Among the altered circulating miRNAs, miR-128 had never been described in previous studies/populations and appeared to be a 'New Lead' in Indians. It was positively correlated with cholesterol both in prediabetic subjects and in diet-induced diabetic mice, suggesting that its increased level might be associated with the development of dyslipedemia associated with T2DM. Our findings imply directionality towards biomarker potential of miRNAs in the prevention/diagnosis/treatment outcomes of diabetes.
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- 2015
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18. Characterization of a New β(1–3)-Glucan Branching Activity of Aspergillus fumigatus
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Gastebois, Amandine, Mouyna, Isabelle, Simenel, Catherine, Clavaud, Cécile, Coddeville, Bernadette, Delepierre, Muriel, Latgé, Jean-Paul, and Fontaine, Thierry
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- 2010
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19. Investigating the prevalence of Bark beetles of Pinus halepensis in the North East semi-arid region of Algeria
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Nicolas Papon, Mustapha Bounechada, Jean-Philippe Bouchara, Farida Benia, Amandine Gastebois, Louiza Gillmann, and Lyès Moumeni
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Bark beetle ,Microfungi ,biology ,aleppo pine (pinus halepensis), scolytinae, bark beetles, forest decline, semi-arid ,Ecology ,QH301-705.5 ,Plant Science ,North east ,biology.organism_classification ,Arid ,%22">Pinus ,Geography ,Aleppo Pine ,visual_art ,visual_art.visual_art_medium ,Animal Science and Zoology ,Bark ,Dead tree ,Biology (General) ,Molecular Biology - Abstract
Moumeni L, Gastebois A, Gillmann L, Papon N, Benia F, Bouchara J-P, Bounechada M. 2021. Investigating the prevalence of Bark beetles of Pinus halepensis in the North East semi-arid region of Algeria. Biodiversitas 22: 2755-2762. Aleppo pine is the most common tree in the semi-arid forests of Algeria. Despite its high resistance to drought and adaptability to all types of soils, the effects of climate change are affecting it directly and indirectly. Stressed trees indeed are subject to bark beetle attacks. In this study, we sampled the bark beetles directly from the affected pine trees. Six species belonging to the Scolytinae subfamily were identified. Tomicus detruens and Orthotomicus erosus were widely spread and present in the three studied forests, where they were found to colonize living trees while Crypturgus numidicus, Crypturgus mediterraneus, Hylurgus ligniperda and Hylurgus micklitzi colonized only dead trees. Together with future identification of the microfungi associated with these xylophagous insects, these data may help to define prevention measures to fight the decline of Aleppo pine forests observed in some parts of Eastern Algeria.
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- 2021
20. The Glycosylphosphatidylinositol-Anchored Superoxide Dismutase of Scedosporium apiospermum Protects the Conidia from Oxidative Stress
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Staerck, Cindy, primary, Yaakoub, Hajar, additional, Vandeputte, Patrick, additional, Tabiasco, Julie, additional, Godon, Charlotte, additional, Gastebois, Amandine, additional, Giraud, Sandrine, additional, Guillemette, Thomas, additional, Calenda, Alphonse, additional, Delneste, Yves, additional, Fleury, Maxime, additional, and Bouchara, Jean-Philippe, additional
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- 2021
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21. A Speed-up Method for Numerical Simulations of Multi-strokes Cold Metallic Sheet Forming Processes
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Matthäus Kott, Anouar Krairi, Sabrina Gastebois, Mark Veldhuis, Jalil Marmi, and ESI Group (ESI Group)
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0209 industrial biotechnology ,Speedup ,Computer simulation ,Computer science ,Process (computing) ,Forming processes ,Mechanical engineering ,CPU time ,02 engineering and technology ,Blank ,Industrial and Manufacturing Engineering ,[SPI]Engineering Sciences [physics] ,020303 mechanical engineering & transports ,020901 industrial engineering & automation ,0203 mechanical engineering ,Artificial Intelligence ,visual_art ,visual_art.visual_art_medium ,Sheet metal ,Reduction (mathematics) - Abstract
The numerical simulation of multi-strokes sheet metal cold forming is very CPU time consuming especially if all relevant physical phenomena are considered. For a single stroke FE simulation, although the process is cold forming, thermo-mechanical coupling should be taken into account. Moreover, friction between the blank and the tools should be correctly modeled. If such complexity is included for the simulation of a single stroke in cold forming, simulating multi-strokes process and maybe multi-steps cold metallic sheet forming, will be extremely CPU time consuming and even unrealistic to be performed. In this work, the authors propose a speed-up method called “jump in strokes method”, which allows a CPU reduction up to 60%. This method was applied for two industrial use cases: the first one was proposed by Philips representing small parts used in shavers and the second one by Opel representing the production of large panels in automotive industry.
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- 2020
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22. Developing collaborative works for faster progress on fungal respiratory infections in cystic fibrosis
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Gilles Nevez, Joerg Steinmann, Laurence Delhaes, Ludovic Duvaux, Jean-Philippe Bouchara, Wieland Meyer, Ludwig Sedlacek, Maxime Fleury, Nicolas Papon, Loïc Favennec, Patrick Vandeputte, Javier Pemán, Amandine Gastebois, Françoise Botterel, Jose A. Vazquez, Stéphane Ranque, Sharon C.-A. Chen, Ana Alastruey-Izquierdo, Solène Le Gal, Craig Williams, Marie-Elisabeth Bougnoux, Carsten Schwarz, Françoise Symoens, Estrella Martin Mazuelos, Guillermo Quindós, Thomas Dugé de Bernonville, Josep Cano, Amparo Solé, Amandine Rougeron, Sandrine Giraud, María Teresa Martín-Gómez, Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Université d'Angers (UA), Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte (M2iSH), Institut National de la Recherche Agronomique (INRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Centre de Recherche en Nutrition Humaine d'Auvergne (CRNH d'Auvergne), University of Sheffield [Sheffield], Facultat de Medicina i Ciències de la Salut, Universitat Rovira i Virgili, Anofel Cryptosporidium National Network, Laboratoire de Parasitologie-Mycologie, Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Service de Microbiologie, Université Paris Descartes - Paris 5 (UPD5)-CHU Necker - Enfants Malades [AP-HP], Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP), Service de Parasitologie et de Mycologie [Lille], Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille), Centre de recherche Cardio-Thoracique de Bordeaux [Bordeaux] (CRCTB), Université Bordeaux Segalen - Bordeaux 2-CHU Bordeaux [Bordeaux]-Institut National de la Santé et de la Recherche Médicale (INSERM), Appareil Digestif Environnement Nutrition (ADEN ), Université de Rouen Normandie (UNIROUEN), Normandie Université (NU)-Normandie Université (NU), Vecteurs - Infections tropicales et méditerranéennes (VITROME), Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées (IRBA), Augusta University, University System of Georgia (USG), The Westmead Institute for Medical Research, Centre for Infectious Disease and Microbiology (CIDM), Hôpital de la Cavale Blanche - CHRU Brest (CHU - BREST ), APP1031943, National Health and Medical Research Council, 2010/IC1003, Vaincre la Mucoviscidose, Institut de Recherche pour le Développement (IRD)-Aix Marseille Université (AMU)-Institut de Recherche Biomédicale des Armées [Brétigny-sur-Orge] (IRBA), Groupe d'Etude des Interactions Hôte-Parasite (GEIHP), Microbes, Intestin, Inflammation et Susceptibilité de l'Hôte - Clermont Auvergne (M2iSH), Institut National de la Recherche Agronomique (INRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université Clermont Auvergne (UCA)-Centre de Recherche en Nutrition Humaine d'Auvergne (CRNH d'Auvergne), Groupe d’Etude des Interactions Hôte-Pathogène, Assistance publique - Hôpitaux de Paris (AP-HP) (APHP)-Hôpital Henri Mondor-Université Paris-Est Créteil Val-de-Marne - Paris 12 (UPEC UP12), Institut de recherche en santé, environnement et travail (Irset), Université d'Angers (UA)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-École des Hautes Études en Santé Publique [EHESP] (EHESP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Structure Fédérative de Recherche en Biologie et Santé de Rennes ( Biosit : Biologie - Santé - Innovation Technologique ), and Université Clermont Auvergne [2017-2020] (UCA [2017-2020])-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre de Recherche en Nutrition Humaine d'Auvergne (CRNH d'Auvergne)-Institut National de la Recherche Agronomique (INRA)
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Microbiological Techniques ,0301 basic medicine ,medicine.medical_specialty ,Antifungal Agents ,Cystic Fibrosis ,biological diagnosis ,030106 microbiology ,Medizin ,Context (language use) ,Disease ,Drug resistance ,Cystic fibrosis ,pathogenic mechanisms ,cystic fibrosis ,Scedosporium ,03 medical and health sciences ,fungal respiratory infections ,[SDV.MHEP.MI]Life Sciences [q-bio]/Human health and pathology/Infectious diseases ,Drug Resistance, Multiple, Fungal ,medicine ,Humans ,Microbiome ,Intensive care medicine ,Respiratory Tract Infections ,Genotyping ,treatment ,business.industry ,Fungi ,Genomics ,General Medicine ,medicine.disease ,3. Good health ,Infectious Diseases ,Mycoses ,Scedosporium species ,Identification (biology) ,business - Abstract
International audience; Cystic fibrosis (CF) is the major genetic inherited disease in Caucasian populations. The respiratory tract of CF patients displays a sticky viscous mucus, which allows for the entrapment of airborne bacteria and fungal spores and provides a suitable environment for growth of microorganisms, including numerous yeast and filamentous fungal species. As a consequence, respiratory infections are the major cause of morbidity and mortality in this clinical context. Although bacteria remain the most common agents of these infections, fungal respiratory infections have emerged as an important cause of disease. Therefore, the International Society for Human and Animal Mycology (ISHAM) has launched a working group on Fungal respiratory infections in Cystic Fibrosis (Fri-CF) in October 2006, which was subsequently approved by the European Confederation of Medical Mycology (ECMM). Meetings of this working group, comprising both clinicians and mycologists involved in the follow-up of CF patients, as well as basic scientists interested in the fungal species involved, provided the opportunity to initiate collaborative works aimed to improve our knowledge on these infections to assist clinicians in patient management. The current review highlights the outcomes of some of these collaborative works in clinical surveillance, pathogenesis and treatment, giving special emphasis to standardization of culture procedures, improvement of species identification methods including the development of nonculture-based diagnostic methods, microbiome studies and identification of new biological markers, and the description of genotyping studies aiming to differentiate transient carriage and chronic colonization of the airways. The review also reports on the breakthrough in sequencing the genomes of the main Scedosporium species as basis for a better understanding of the pathogenic mechanisms of these fungi, and discusses treatment options of infections caused by multidrug resistant microorganisms, such as Scedosporium and Lomentospora species and members of the Rasamsonia argillacea species complex.
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- 2018
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23. ORHRO: OPEN Robotics Humanoid RObot - from a mechanical retrofit to a new real time industrial controller based walking robot
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Philippe Vulliez, Jean-Pierre Gazeau, J. Gastebois, P. Seguin, A. Eon, and P. Laguillaumie
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Computer science ,business.industry ,0206 medical engineering ,Biomedical Engineering ,Bioengineering ,Motion synthesis ,Control engineering ,Robotics ,030229 sport sciences ,02 engineering and technology ,General Medicine ,020601 biomedical engineering ,Computer Science Applications ,Human-Computer Interaction ,03 medical and health sciences ,0302 clinical medicine ,Real-time Control System ,Control theory ,Robot ,Artificial intelligence ,business ,Humanoid robot ,ComputingMethodologies_COMPUTERGRAPHICS - Abstract
The design and control of walking robots is a great issue for researchers (high number of DOFs, coupled phenomena). They could benefit to the biomechanics community as testing beds for bio-inspired...
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- 2019
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24. Aspergillus fumigatus: cell wall polysaccharides, their biosynthesis and organization
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Gastebois, Amandine, Clavaud, Cécile, Aimanianda, Vishukumar, and Latgé, Jean-Paul
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- 2009
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25. Diversity and Evolution of Sensor Histidine Kinases in Eukaryotes
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Kabbara, Samar, Herivaux, Anais, Dugé de Bernonville, Thomas, Courdavault, Vincent, Clastre, Marc, Gastebois, Amandine, Osman, Marwan, Hamzé, Monzer, Cock, J Mark, Schaap, Pauline, Papon, Nicolas, Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Université d'Angers (UA), Biomolécules et biotechnologies végétales (BBV EA 2106), Université de Tours (UT), Centre d’Infection et d’Immunité de Lille - INSERM U 1019 - UMR 9017 - UMR 8204 (CIIL), Centre National de la Recherche Scientifique (CNRS)-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Université de Lille-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP), Centre AZM pour la Recherche en Biotechnologie et ses Applications, Université Libanaise, Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS), School of Life Sciences, University of Dundee, Gestionnaire, HAL Sorbonne Université 5, Institut Pasteur de Lille, Réseau International des Instituts Pasteur (RIIP)-Réseau International des Instituts Pasteur (RIIP)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Lille-Centre Hospitalier Régional Universitaire [Lille] (CHRU Lille)-Centre National de la Recherche Scientifique (CNRS), Laboratoire de Biologie Intégrative des Modèles Marins (LBI2M), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Station biologique de Roscoff (SBR), Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Université de Tours
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Evolution, Molecular ,eukaryotes ,Histidine Kinase ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,phylogenetic analysis ,histidine kinases ,two-component systems ,[SDV.BBM.GTP] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,Eukaryota ,cell signaling ,Phylogeny ,Signal Transduction ,Research Article - Abstract
International audience; Histidine kinases (HKs) are primary sensor proteins that act in cell signaling pathways generically referred to as “two-component systems” (TCSs). TCSs are among the most widely distributed transduction systems used by both prokaryotic and eukaryotic organisms to detect and respond to a broad range of environmental cues. The structure and distribution of HK proteins are now well documented in prokaryotes, but information is still fragmentary for eukaryotes. Here, we have taken advantage of recent genomic resources to explore the structural diversity and the phylogenetic distribution of HKs in the prominent eukaryotic supergroups. Searches of the genomes of 67 eukaryotic species spread evenly throughout the phylogenetic tree of life identified 748 predicted HK proteins. Independent phylogenetic analyses of predicted HK proteins were carried out for each of the major eukaryotic supergroups. This allowed most of the compiled sequences to be categorized into previously described HK groups. Beyond the phylogenetic analysis of eukaryotic HKs, this study revealed some interesting findings: 1) characterization of some previously undescribed eukaryotic HK groups with predicted functions putatively related to physiological traits; 2) discovery of HK groups that were previously believed to be restricted to a single kingdom in additional supergroups, and 3) indications that some evolutionary paths have led to the appearance, transfer, duplication, and loss of HK genes in some phylogenetic lineages. This study provides an unprecedented overview of the structure and distribution of HKs in the Eukaryota and represents a first step toward deciphering the evolution of TCS signaling in living organisms.
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- 2018
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26. Developing collaborative works for faster progress on fungal respiratory infections in cystic fibrosis
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Schwarz C, Vandeputte P, Rougeron A, Giraud S, Dugé de Bernonville T, Duvaux L, Gastebois A, Alastruey-Izquierdo A, Martín-Gomez MT, Mazuelos EM, Sole A, Cano J, Pemán J, Quindos G, Botterel F, Bougnoux ME, Chen S, Delhaès L, Favennec L, Ranque S, Sedlacek L, Steinmann J, Vazquez J, Williams C, Meyer W, Le Gal S, Nevez G, Fleury M, Papon N, Symoens F, Bouchara JP, and ECMM/ISHAM working group Fungal respiratory infections in Cystic
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cystic fibrosis ,fungal respiratory infections ,biological diagnosis ,treatment ,Scedosporium species ,pathogenic mechanisms - Abstract
Cystic fibrosis (CF) is the major genetic inherited disease in Caucasian populations. The respiratory tract of CF patients displays a sticky viscous mucus, which allows for the entrapment of airborne bacteria and fungal spores and provides a suitable environment for growth of microorganisms, including numerous yeast and filamentous fungal species. As a consequence, respiratory infections are the major cause of morbidity and mortality in this clinical context. Although bacteria remain the most common agents of these infections, fungal respiratory infections have emerged as an important cause of disease. Therefore, the International Society for Human and Animal Mycology (ISHAM) has launched a working group on Fungal respiratory infections in Cystic Fibrosis (Fri-CF) in October 2006, which was subsequently approved by the European Confederation of Medical Mycology (ECMM). Meetings of this working group, comprising both clinicians and mycologists involved in the follow-up of CF patients, as well as basic scientists interested in the fungal species involved, provided the opportunity to initiate collaborative works aimed to improve our knowledge on these infections to assist clinicians in patient management. The current review highlights the outcomes of some of these collaborative works in clinical surveillance, pathogenesis and treatment, giving special emphasis to standardization of culture procedures, improvement of species identification methods including the development of nonculture-based diagnostic methods, microbiome studies and identification of new biological markers, and the description of genotyping studies aiming to differentiate transient carriage and chronic colonization of the airways. The review also reports on the breakthrough in sequencing the genomes of the main Scedosporium species as basis for a better understanding of the pathogenic mechanisms of these fungi, and discusses treatment options of infections caused by multidrug resistant microorganisms, such as Scedosporium and Lomentospora species and members of the Rasamsonia argillacea species complex.
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- 2018
27. Magnetocaloric properties of a novel ferromagnet Gd3Co4+xAl12−x (x = 0.50)
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Mathieu Pasturel, Olivier Tougait, Thierry Guizouarn, B. Belgacem, Rached Ben Hassen, N. Nasri, Justine Gastebois, Institut des Sciences Chimiques de Rennes (ISCR), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Ecole Nationale Supérieure de Chimie de Rennes (ENSCR)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Ecole Nationale Supérieure de Chimie de Rennes (ENSCR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), and Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA)
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Materials science ,Condensed matter physics ,Mechanical Engineering ,Gadolinium ,Metals and Alloys ,Intermetallic ,chemistry.chemical_element ,General Chemistry ,Atmospheric temperature range ,Magnetization ,Ferromagnetism ,chemistry ,Mechanics of Materials ,Materials Chemistry ,Magnetic refrigeration ,[CHIM]Chemical Sciences ,Cobalt ,Aluminide - Abstract
A novel gadolinium and cobalt based aluminide, namely Gd3Co4+xAl12−x (x = 0.50(3)) is shown to crystallize in the hexagonal Gd3Ru4Al12 structure-type (space-group P63/mmc, a = 8.6830(1) A, c = 9.3164(2) A at room temperature). The investigation of its magnetic properties revealed a reversible ferromagnetic ordering at TC ≈ 40 K but expanding in a wide temperature range, potentially due to the geometrical magnetic frustrations expected in this structure-type. The magnetocaloric properties of this intermetallic, determined from both magnetization and specific heat data, are dominated by a maximum entropy variation of −3.28 J kg−1 K−1 at 39(1) K and an adiabatic temperature change of about 1.5 K extending from 20 to 40 K, highlighting some interest for low temperature applications.
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- 2015
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28. Draft Genome Sequence of the Human-Pathogenic Fungus Scedosporium boydii
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Duvaux, Ludovic, Shiller, Jason, Vandeputte, Patrick, Duge de Bernonville, Thomas, Thornton, Christopher, Papon, Nicolas, Le Cam, Bruno, Bouchara, Jean-Philippe, Gastebois, Amandine, Génétique Diversité et Ecophysiologie des Céréales - Clermont Auvergne (GDEC), Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-Université Clermont Auvergne (UCA), Groupe d'Etude des Interactions Hôte-Parasite (GEIHP), Université d'Angers (UA), Institut de Recherche en Horticulture et Semences (IRHS), Université d'Angers (UA)-Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Université d'Angers (UA)-AGROCAMPUS OUEST-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Université de Lausanne (UNIL), Biomolécules et biotechnologies végétales (BBV EA 2106), Université de Tours, Biosciences, College of Life and Environmental Sciences, University of Exeter, Stocker Road, Exeter, EX4 4QD, UK, Groupe d’Etude des Interactions Hôte-Pathogène, Génétique et Horticulture (GenHort), AGROCAMPUS OUEST-Institut National de la Recherche Agronomique (INRA), Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Génétique Diversité et Ecophysiologie des Céréales (GDEC), Institut National de la Recherche Agronomique (INRA)-Université Clermont Auvergne [2017-2020] (UCA [2017-2020]), AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de la Recherche Agronomique (INRA)-Université d'Angers (UA), Université d'Angers (UA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE), Université de Tours (UT), Biosciences, College of Life and Environmental Sciences, University of Exeter, Institut National de la Recherche Agronomique (INRA)-AGROCAMPUS OUEST, Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro), Université d'Angers (UA)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest, and Université de Lausanne = University of Lausanne (UNIL)
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Eukaryotes ,[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,skin and connective tissue diseases ,ComputingMilieux_MISCELLANEOUS ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology - Abstract
The opportunistic fungal pathogen Scedosporium boydii is the most common Scedosporium species in French patients with cystic fibrosis. Here we present the first genome report for S. boydii, providing a resource which may enable the elucidation of the pathogenic mechanisms in this species.
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- 2017
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29. Transcriptrice Insight in the Control of Legume Root Secondary Infection by the Sinorhizobium meliloti Transcriptional Regulator Clr
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Zou, Lan, Gastebois, Amandine, Mathieu-Demazière, Céline, Sorroche, Fernando, Masson-Boivin, Catherine, Batut, Jacques, Garnerone, Anne-Marie, Laboratoire des interactions plantes micro-organismes (LIPM), Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), Groupe d’Etude des Interactions Hôte-Pathogène, Université d'Angers (UA), Groupe d'Etude des Interactions Hôte-Parasite (GEIHP), Laboratoire de Chimie Agro-Industrielle (LCA), Institut National de la Recherche Agronomique (INRA)-Ecole Nationale Supérieure de Chimie de Toulouse, Laboratoire de Biologie Moléculaire des Relations Plantes-Microorganismes, Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique (INRA)-Centre National de la Recherche Scientifique (CNRS), Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Chimie Agro-Industrielle (CAI), Institut National Polytechnique (Toulouse) (Toulouse INP), and Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Ecole nationale supérieure des ingénieurs en arts chimiques et technologiques-Institut National de la Recherche Agronomique (INRA)
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[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN] ,[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC] ,ComputingMilieux_MISCELLANEOUS - Abstract
International audience
- Published
- 2017
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30. The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi
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Herivaux, Anais, de Bernonville, Thomas Duge, Roux, Christophe, Clastre, Marc, Courdavault, Vincent, Gastebois, Amandine, Bouchara, Jean-Philippe, James, Timothy Y., Latge, Jean-Paul, Martin, Francis, Papon, Nicolas, Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Université d'Angers (UA), Biomolécules et biotechnologies végétales (BBV EA 2106), Université de Tours (UT), Interactions Microbiennes dans la Rhizosphère et les Racines, Laboratoire de Recherche en Sciences Végétales (LRSV), Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université de Toulouse (UT)-Université de Toulouse (UT)-Centre National de la Recherche Scientifique (CNRS), Université de Toulouse (UT), Department of Ecology and Evolutionary Biology (Faculty of Biology), University of Science-Vietnam National Universities, Aspergillus, Institut Pasteur [Paris] (IP), Interactions Arbres-Microorganismes (IAM), Institut National de la Recherche Agronomique (INRA)-Université de Lorraine (UL), Laboratory of Excellence Advanced Research on the Biology of Tree and Forest Ecosystems (ARBRE) [ANR 11 LABX 0002 01], U.S. DOE through Oak Ridge National Laboratory Scientific Focus Area for Genomics Foundational Sciences (Plant Microbe Interfaces Project), John W. Taylor, ANR-11-LABX-0002,ARBRE,Recherches Avancées sur l'Arbre et les Ecosytèmes Forestiers(2011), Groupe d’Etude des Interactions Hôte-Pathogène, Université de Tours, Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées, Université Fédérale Toulouse Midi-Pyrénées, Institut Pasteur [Paris], Université de Lorraine (UL)-Institut National de la Recherche Agronomique (INRA), Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)-Université Toulouse III - Paul Sabatier (UT3), and Université Fédérale Toulouse Midi-Pyrénées-Université Fédérale Toulouse Midi-Pyrénées-Centre National de la Recherche Scientifique (CNRS)
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MESH: Receptors, Cell Surface/genetics ,Histidine Kinase ,[SDV]Life Sciences [q-bio] ,fungi ,Fungi ,food and beverages ,Computational Biology ,MESH: Histidine Kinase/genetics ,Receptors, Cell Surface ,Opinion/Hypothesis ,Plants ,Microbiology ,QR1-502 ,Evolution, Molecular ,Plant Growth Regulators ,MESH: Plants/chemistry ,MESH: Evolution, Molecular ,MESH: Plant Growth Regulators/metabolism ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,MESH: Computational Biology ,MESH: Fungi/genetics - Abstract
International audience; Histidine kinases (HKs) are among the most prominent sensing proteins studied in the kingdom Fungi. Their distribution and biological functions in early diverging fungi (EDF), however, remain elusive. We have taken advantage of recent genomic resources to elucidate whether relationships between the occurrence of specific HKs in some EDF and their respective habitat/lifestyle could be established. This led to the unexpected discovery of fungal HKs that share a high degree of similarity with receptors for plant hormones (ethylene and cytokinin). Importantly, these phytohormone receptor homologs are found not only in EDF that behave as plant root symbionts or endophytes but also in EDF species that colonize decaying plant material. We hypothesize that these particular sensing proteins promoted the interaction of EDF with plants, leading to the conquest of land by these ancestral fungi.
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- 2017
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31. Major Sensing Proteins in Pathogenic Fungi: The Hybrid Histidine Kinase Family
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Jean-Philippe Bouchara, Jean-Paul Latgé, Amandine Gastebois, Yong Sun Bahn, Nicolas Papon, Anaïs Hérivaux, Yee Seul So, Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Université d'Angers (UA), Yonsei University, Aspergillus, Institut Pasteur [Paris] (IP), Laboratoire de Parasitologie-Mycologie (CHU d'Angers), Centre Hospitalier Universitaire d'Angers (CHU Angers), PRES Université Nantes Angers Le Mans (UNAM)-PRES Université Nantes Angers Le Mans (UNAM), and Institut Pasteur [Paris]
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0301 basic medicine ,Fungal Structure ,Histidine Kinase ,Yeast and Fungal Models ,Plant Science ,Pathology and Laboratory Medicine ,Biochemistry ,Pearls ,Medicine and Health Sciences ,Amino Acids ,Biology (General) ,ComputingMilieux_MISCELLANEOUS ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,Candida ,Fungal Pathogens ,Fungal protein ,Organic Compounds ,Fungal genetics ,Plant Fungal Pathogens ,Genomics ,Chemistry ,Medical Microbiology ,Physical Sciences ,MESH: Histidine Kinase ,MESH: Fungal Proteins ,Pathogens ,Basic Amino Acids ,QH301-705.5 ,Immunology ,Plant Pathogens ,Mycology ,Biology ,Research and Analysis Methods ,Microbiology ,Fungal Proteins ,03 medical and health sciences ,Model Organisms ,Virology ,Genetics ,Candida Albicans ,Fungal Genetics ,Histidine ,Molecular Biology ,Microbial Pathogens ,Fungal Genomics ,Histidine kinase ,Organic Chemistry ,Chemical Compounds ,Organisms ,Fungi ,Biology and Life Sciences ,Proteins ,Plant Pathology ,RC581-607 ,Yeast ,030104 developmental biology ,Parasitology ,Fungal genome ,Immunologic diseases. Allergy - Abstract
International audience
- Published
- 2016
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32. Transition from physical activity to inactivity increases skeletal muscle miR-148b content and triggers insulin resistance
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Etienne Lefai, Chantal Simon, Vanessa Euthine, Stéphane Blanc, Vincent Pialoux, Elise Pelascini, Stéphanie Chanon, Caroline Gastebois, Sophie Rome, Christine Durand, Audrey Jalabert, Cardiovasculaire, métabolisme, diabétologie et nutrition (CarMeN), Hospices Civils de Lyon (HCL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National de la Recherche Agronomique (INRA), Département de Chirurgie Digestive et Bariatrique Hospices Civils de Lyon, Laboratoire Interuniversitaire de Biologie de la Motricité (LIBM ), Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry])-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Université Jean Monnet [Saint-Étienne] (UJM), Département Ecologie, Physiologie et Ethologie (DEPE-IPHC), Institut Pluridisciplinaire Hubert Curien (IPHC), Université de Strasbourg (UNISTRA)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Centre National de la Recherche Scientifique (CNRS), Susan Wray, Lefai, Etienne, Gaillard, Brigitte, Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Hospices Civils de Lyon (HCL)-Institut National de la Santé et de la Recherche Médicale (INSERM), Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Université Jean Monnet - Saint-Étienne (UJM)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hospices Civils de Lyon (HCL), Université de Lyon-Université de Lyon-Université Jean Monnet [Saint-Étienne] (UJM)-Université Savoie Mont Blanc (USMB [Université de Savoie] [Université de Chambéry]), and Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)
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Male ,0301 basic medicine ,Neuroblastoma RAS viral oncogene homolog ,[SDV.MHEP.PHY] Life Sciences [q-bio]/Human health and pathology/Tissues and Organs [q-bio.TO] ,Physiology ,medicine.medical_treatment ,Glucose uptake ,Muscle Fibers, Skeletal ,Signalling Pathways ,GTP Phosphohydrolases ,Insulin-signaling pathway ,0302 clinical medicine ,Insulin ,Phosphorylation ,Original Research ,rho-Associated Kinases ,Endurance and Performance ,Middle Aged ,medicine.anatomical_structure ,Female ,Endocrine and Metabolic Conditons, Disorders and Treatments ,Adult ,Muscle tissue ,medicine.medical_specialty ,Skeletal Muscle ,muscle tissue ,030209 endocrinology & metabolism ,Biology ,03 medical and health sciences ,Insulin resistance ,Insulin‐signaling pathway ,Downregulation and upregulation ,Physiology (medical) ,Internal medicine ,medicine ,[SDV.MHEP.PHY]Life Sciences [q-bio]/Human health and pathology/Tissues and Organs [q-bio.TO] ,Animals ,Humans ,Muscle, Skeletal ,Exercise ,miRNA ,Membrane Proteins ,Skeletal muscle ,medicine.disease ,Mice, Inbred C57BL ,MicroRNAs ,030104 developmental biology ,Endocrinology ,physical inactivity ,myotube ,Insulin Resistance ,Sedentary Behavior - Abstract
International audience; This study investigated miR-148b as a potential physiological actor of physical inactivity-induced effects in skeletal muscle. By using animal and human protocols , we demonstrated that the early phase of transition toward inactivity was associated with an increase in muscle miR-148b content, which triggered the downregulation of NRAS and ROCK1 target genes. Using human myo-tubes, we demonstrated that overexpression of miR-148b decreased NRAS and ROCK1 protein levels, and PKB phosphorylation and glucose uptake in response to insulin. Increase in muscle miR-148b content might thus participate in the decrease in insulin sensitivity at the whole body level during the transition toward physical inactivity.
- Published
- 2016
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33. Aspergillus fumigatus: cell wall polysaccharides, their biosynthesis and organization
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Cécile Clavaud, Vishukumar Aimanianda, Amandine Gastebois, and Jean-Paul Latgé
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Microbiology (medical) ,chemistry.chemical_classification ,Antifungal Agents ,Aspergillus fumigatus ,Thermophile ,Virulence ,Biology ,Polysaccharide ,biology.organism_classification ,Microbiology ,Biosynthetic Pathways ,Cell wall ,chemistry.chemical_compound ,Enzyme ,chemistry ,Biochemistry ,Biosynthesis ,Cell Wall ,Polysaccharides ,Biogenesis - Abstract
Aspergillus fumigatus is the most prevalent thermophilic inhabitants of decaying vegetation and one of the most important human opportunistic fungal pathogens. Like other fungi, A. fumigatus cells are covered by a cell wall, which is both a protective, rigid exoskeleton and a dynamic structure, undergoing constant modification depending on its environment. The cell wall, in the majority of fungi, is composed of polysaccharides, and understanding the biochemical organization and biogenesis of an A. fumigatus cell wall is essential as this envelop is continuously in contact with the environment/host cell and acts as a sieve and reservoir for molecules, such as enzymes and toxins that play an active role during infection. This article is intended to give an overview of the biosynthesis of constituent cell wall polysaccharides and their postsynthetic modification in A. fumigatus, it also discusses the antifungal drugs that affect cell wall polysaccharide biosynthesis.
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- 2009
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34. Reinvestigation of the Ce–Co–Al ternary system: Isothermal section at 973 K
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Mathieu Pasturel, Henri Noël, N. Nasri, I. Péron, Olivier Tougait, Francis Gouttefangeas, J. Gastebois, B. Belgacem, R. Ben Hassen, Institut des Sciences Chimiques de Rennes (ISCR), Université de Rennes (UR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Ecole Nationale Supérieure de Chimie de Rennes (ENSCR)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Unité de Recherche de Chimie des Matériaux (ISSBAT), Université de Tunis El Manar (UTM), Centre de Microscopie Electronique à Balayage et microAnalyse (C.M.E.B.A.), Université de Rennes (UR), Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES)-Ecole Nationale Supérieure de Chimie de Rennes (ENSCR)-Institut National des Sciences Appliquées - Rennes (INSA Rennes), Institut National des Sciences Appliquées (INSA)-Université de Rennes (UNIV-RENNES)-Institut National des Sciences Appliquées (INSA), Université de Rennes 1 (UR1), Université de Rennes (UNIV-RENNES)-Université de Rennes (UNIV-RENNES), and Centre de Microscopie Electronique à Balayage et Microanalyse (C.M.E.B.A.)
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Ternary numeral system ,Intermetallics ,Chemistry ,Scanning electron microscope ,Mechanical Engineering ,Metals and Alloys ,Intermetallic ,Energy-dispersive X-ray spectroscopy ,Analytical chemistry ,Isothermal process ,X-ray diffraction ,Crystallography ,Mechanics of Materials ,X-ray crystallography ,Materials Chemistry ,[CHIM]Chemical Sciences ,Thermal analysis ,Ternary operation ,Scanning electron microscopy - Abstract
The Ce–Co–Al ternary phase diagram has been reinvestigated at 973 K by means of powder X-ray diffraction, scanning electron microscopy, energy dispersive spectroscopy and differential thermal analyses. It contains 5 ternary phases (CeCo 2 Al 8 , Ce 2 Co 6 Al 19 , CeCoAl 4 , Ce 3 Co 3 Al 4 and CeCoAl) as well as 7 extensions in the ternary field of pseudo-binaries (CeAl 2 − x Co x with 0 ⩽ x ⩽ 0.18; CeCo 2 − x Al x with 0 ⩽ x ⩽ 0.21; CeCo 3 − y Al y with 0 ⩽ y ⩽ 0.20; Ce 2 Co 7 − x Al x with 0 ⩽ x ⩽ 0.73; Ce 5 Co 19 − y Al y with 0 ⩽ y ⩽ 0.20; CeCo 5 − x Al x with 0 ⩽ x ⩽ 0.71 and Ce 2 Co 17 − y Al y with 0 ⩽ y ⩽ 2.2). Two liquid areas are present at the Al and Ce-rich corners of this isothermal section.
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- 2015
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35. Circulating MiRNAs of 'Asian Indian Phenotype' Identified in Subjects with Impaired Glucose Tolerance and Patients with Type 2 Diabetes
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Viswanathan Mohan, Sophie Rome, Audrey Villard, Balakumar Mahalingam, Muthuswamy Balasubramanyam, C. S. Shanthirani, Chandrakumar Sathishkumar, Caroline Gastebois, Paramasivam Prabu, Sankaramoorthy Aravind, Cardiovasculaire, métabolisme, diabétologie et nutrition (CarMeN), Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hospices Civils de Lyon (HCL), Hospices Civils de Lyon (HCL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National de la Recherche Agronomique (INRA), Department of Biotechnology (DBT), Government of India, French Fondation pour la Recherche Medicale [FRM-20101220456], French-Indian medical research cooperation program, and Balasubramanyam, Muthuswamy
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Blood Glucose ,Male ,Prediabetic State/*blood/ethnology/genetics/pathology ,endocrine system diseases ,[SDV]Life Sciences [q-bio] ,lcsh:Medicine ,Type 2 diabetes ,Inbred C57BL ,Impaired glucose tolerance ,Mice ,0302 clinical medicine ,Experimental/blood/genetics/pathology ,Ethnicity ,Insulin ,lcsh:Science ,0303 health sciences ,Glucose tolerance test ,education.field_of_study ,Multidisciplinary ,medicine.diagnostic_test ,Phenotype ,Hemoglobin A ,Fasting ,Middle Aged ,Glycosylated/metabolism ,3. Good health ,MicroRNAs/*blood/genetics ,Cholesterol ,Female ,Research Article ,Adult ,diabète de type 2 ,Population ,030209 endocrinology & metabolism ,Ethnic Groups ,Biology ,Cholesterol/blood ,Diabetes Mellitus, Experimental ,Prediabetic State ,03 medical and health sciences ,Insulin resistance ,Type 2/*blood/ethnology/genetics/pathology ,Diabetes mellitus ,Glucose Intolerance ,medicine ,Diabetes Mellitus ,Humans ,Animals ,education ,miRNA ,030304 developmental biology ,Glycated Hemoglobin ,Blood Glucose/metabolism ,lcsh:R ,Case-control study ,Type 2 Diabetes Mellitus ,nutritional and metabolic diseases ,Glucose Tolerance Test ,medicine.disease ,Mice, Inbred C57BL ,MicroRNAs ,Diabetes Mellitus, Type 2 ,Gene Expression Regulation ,Case-Control Studies ,Immunology ,lcsh:Q ,Insulin Resistance ,Insulin/blood ,Biomarkers ,Biomarkers/blood - Abstract
International audience; Several omics technologies are underway worldwide with an aim to unravel the pathophysiology of a complex phenotype such as type 2 diabetes mellitus (T2DM). While recent studies imply a clinically relevant and potential biomarker role of circulatory miRNAs in the etiology of T2DM, there is lack of data on this aspect in Indians-an ethnic population characterized to represent 'Asian Indian phenotype' known to be more prone to develop T2DM and cardiovascular disease than Europeans. We performed global serum miRNA profiling and the validation of candidate miRNAs by qRT-PCR in a cohort of subjects comprised of normal glucose tolerance (NGT), impaired glucose tolerance (IGT) and patients with T2DM. Our study revealed 4 differentially expressed miRNAs (miR-128, miR-130b-3p, miR-374a-5p, miR-423-5p) in subjects with IGT and T2DM patients compared to control subjects. They were positively or negatively correlated to cholesterol levels, HbA1C, HOMA-IR and fasting insulin. Interestingly, circulating level of miR-128 and miR-130b-3p were also altered in serum of diet-induced diabetic mice compared to control animals. Among the altered circulating miRNAs, miR-128 had never been described in previous studies/populations and appeared to be a 'New Lead' in Indians. It was positively correlated with cholesterol both in prediabetic subjects and in diet-induced diabetic mice, suggesting that its increased level might be associated with the development of dyslipedemia associated with T2DM. Our findings imply directionality towards biomarker potential of miRNAs in the prevention/diagnosis/treatment outcomes of diabetes.
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- 2015
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36. A Multifaceted Study of Scedosporium boydii Cell Wall Changes during Germination and Identification of GPI-Anchored Proteins
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Agata Zykwinska, Jean-Philippe Bouchara, Agnès Marot, Sarah Ghamrawi, Amandine Gastebois, Stéphane Cuenot, Guillaume Mabilleau, Patrick Vandeputte, Groupe d'Étude des Interactions Hôte-Pathogène (GEIHP), Université d'Angers (UA), Institut des Matériaux Jean Rouxel (IMN), Université de Nantes - UFR des Sciences et des Techniques (UN UFR ST), Université de Nantes (UN)-Université de Nantes (UN)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Ecole Polytechnique de l'Université de Nantes (EPUN), Université de Nantes (UN)-Université de Nantes (UN), and Service Commun d'Imageries et Analyses microscopiques
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Hypha ,Glycosylphosphatidylinositols ,[SDV]Life Sciences [q-bio] ,Science ,Molecular Sequence Data ,Static Electricity ,Scedosporium boydii ,Virulence ,GPI-Linked Proteins ,Microbiology ,Cell wall ,Fungal Proteins ,Cell Wall ,Gene Expression Regulation, Fungal ,Lectins ,Amino Acid Sequence ,Scedosporium ,ComputingMilieux_MISCELLANEOUS ,Fungal protein ,Multidisciplinary ,biology ,Mycelium ,Superoxide Dismutase ,Fungal genetics ,Lectin ,Fungal Polysaccharides ,Molecular Sequence Annotation ,Spores, Fungal ,Biochemistry ,Membrane protein ,Ferritins ,biology.protein ,Medicine ,Hydrophobic and Hydrophilic Interactions ,Research Article ,Protein Binding - Abstract
Scedosporium boydii is a pathogenic filamentous fungus that causes a wide range of human infections, notably respiratory infections in patients with cystic fibrosis. The development of new therapeutic strategies targeting S. boydii necessitates a better understanding of the physiology of this fungus and the identification of new molecular targets. In this work, we studied the conidium-to-germ tube transition using a variety of techniques including scanning and transmission electron microscopy, atomic force microscopy, two-phase partitioning, microelectrophoresis and cationized ferritin labeling, chemical force spectroscopy, lectin labeling, and nanoLC-MS/MS for cell wall GPI-anchored protein analysis. We demonstrated that the cell wall undergoes structural changes with germination accompanied with a lower hydrophobicity, electrostatic charge and binding capacity to cationized ferritin. Changes during germination also included a higher accessibility of some cell wall polysaccharides to lectins and less CH3/CH3 interactions (hydrophobic adhesion forces mainly due to glycoproteins). We also extracted and identified 20 GPI-anchored proteins from the cell wall of S. boydii, among which one was detected only in the conidial wall extract and 12 only in the mycelial wall extract. The identified sequences belonged to protein families involved in virulence in other fungi like Gelp/Gasp, Crhp, Bglp/Bgtp families and a superoxide dismutase. These results highlighted the cell wall remodeling during germination in S. boydii with the identification of a substantial number of cell wall GPI-anchored conidial or hyphal specific proteins, which provides a basis to investigate the role of these molecules in the host-pathogen interaction and fungal virulence.
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- 2015
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37. Implication de l'adiponectine et des microARNs dans les mécanismes associés aux effets induits par l'activité et l'inactivité physique
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Gastebois, Caroline, STAR, ABES, Cardiovasculaire, métabolisme, diabétologie et nutrition ( CarMeN ), Institut National de la Recherche Agronomique ( INRA ) -Université Claude Bernard Lyon 1 ( UCBL ), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon ( INSA Lyon ), Université de Lyon-Institut National des Sciences Appliquées ( INSA ) -Institut National des Sciences Appliquées ( INSA ) -Hospices Civils de Lyon ( HCL ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ), Université Claude Bernard - Lyon I, Chantal Simon, Étienne Lefai, Cardiovasculaire, métabolisme, diabétologie et nutrition (CarMeN), Hospices Civils de Lyon (HCL)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Institut National des Sciences Appliquées de Lyon (INSA Lyon), Institut National des Sciences Appliquées (INSA)-Université de Lyon-Institut National des Sciences Appliquées (INSA)-Université de Lyon-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Institut National de la Recherche Agronomique (INRA), Institut National de la Recherche Agronomique (INRA)-Université Claude Bernard Lyon 1 (UCBL), Université de Lyon-Université de Lyon-Institut National des Sciences Appliquées de Lyon (INSA Lyon), and Université de Lyon-Institut National des Sciences Appliquées (INSA)-Institut National des Sciences Appliquées (INSA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Hospices Civils de Lyon (HCL)
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Activité physique ,MicroARN ,Metabolism ,Physical inactivity ,Métabolisme ,[ SDV.MHEP.PHY ] Life Sciences [q-bio]/Human health and pathology/Tissues and Organs [q-bio.TO] ,Physical activity ,[SDV.MHEP.PHY] Life Sciences [q-bio]/Human health and pathology/Tissues and Organs [q-bio.TO] ,[SDV.MHEP.PHY]Life Sciences [q-bio]/Human health and pathology/Tissues and Organs [q-bio.TO] ,Cross-talk ,MicroRNA ,Adiponectine ,Inactivité physique - Abstract
Current lifestyle changes, notably sedentary behavior, are associated with chronic diseases, while regular activity improves metabolic functions The purpose of my work is to examine the effects of different level of physical activity, until extreme inactivity on cross-talk mediators, such as adiponectine and microRNAs, and on metabolism, notably in muscle or liver. We demonstrate a significant increase of hepatic markers under severe physical inactivity (60d bed-rest), showing the onset of a development of NASH. Our data support that regular exercise can limit these physical inactivity-induced metabolic alterations. We demonstrate that independently of effects of physical activity and inactivity on fat mass, adiponectin plasma concentrations were negatively related to physical activity level. Our data highlight that variations in total plasma adiponectin with physical activity level are mainly due to changes in HMW adiponectin plasma concentrations, and are unlikely explained by variations in expression of adiponectin in adipose tissue and muscle. We also show an inverse relation between fasting insulin plasma concentrations with both adiponectin receptors, and one of its downstream effector (APPL1) in the muscle, suggesting an improvement of adiponectin muscular sensitivity. During a contrasted and moderate physical activity intervention in human and mice, we show that transition from activity toward inactivity results in muscle miR-148b content increase, leading to muscle metabolism alteration. Our study on miR-148b expression modulation in vitro in human myotubes, show its involvement in insulin signaling pathway in muscle, suggesting that miR-148b accumulation in muscle could participate in the whole body insulin sensitivity degradation, which is a feature of persistent sedentary behavior. Altogether, these results demonstrate that the study of cross-talk actors is crucial to understand the mechanisms involved in active and inactive behaviors, and their effects on health, Les travaux de thèse présentés dans ce manuscrit ont pour but d’étudier les effets de différents niveaux d’activité physique, jusqu’à l’inactivité extrême sur des acteurs du dialogue inter-organe comme l’adiponectine et les microARNs, et sur le métabolisme, notamment dans le muscle ou le foie. Nous démontrons que l’inactivité physique extrême, dans le cadre d’un bedrest de 60 jours, augmente les marqueurs de l’inflammation hépatique, prémices du développement d’une stéato-hépatite non alcoolique. Nos données montrent que des exercices réguliers peuvent limiter les altérations métaboliques induites par l’inactivité physique. Nous montrons, ensuite qu’indépendamment des effets de l’activité et l’inactivité physique sur la masse grasse, les concentrations circulantes d’adiponectine sont inversement associées avec le niveau d’activité physique. Nous montrons notamment que les variations des taux circulants d’adiponectine totale avec le niveau d’activité physique sont principalement dû aux variations de la forme de haut poids moléculaire, et ne sont pas expliquées par des variations d’expression de l’adiponectine dans le tissu adipeux ou musculaire. Nous montrons également une relation inverse entre l’insulinémie plasmatique à jeun et les récepteurs de l’adiponectine, et un de ses effecteurs (APPL1) dans le muscle supportant l’amélioration de la sensibilité à l’adiponectine musculaire. Au cours d’une intervention contrastée et modérée sur le niveau d’activité physique chez l’homme et la souris, nous avons pu montrer que la transition d’un statut actif vers inactif augmentait le niveau d’expression de miR-148b dans le muscle, participant à la dégradation du métabolisme. Notre étude de modulation de l’expression de miR-148b in vitro dans les myotubes humains, montre son implication dans la voie de signalisation de l’insuline, et suggère que l’accumulation de miR-148b dans le tissu musculaire peut participer à l’altération de la sensibilité à l’insuline qui est caractéristique des comportements sédentaires persistants. L’ensemble de ces résultats démontrent que l’étude des acteurs de la signalisation inter-organe est cruciale pour comprendre les mécanismes mis en jeu par les comportements actifs et inactifs, et leurs effets sur la santé
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- 2015
38. Diversity and Evolution of Sensor Histidine Kinases in Eukaryotes.
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Kabbara, Samar, Hérivaux, Anaïs, Bernonville, Thomas Dugé de, Courdavault, Vincent, Clastre, Marc, Gastebois, Amandine, Osman, Marwan, Hamze, Monzer, Cock, J Mark, Schaap, Pauline, and Papon, Nicolas
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HISTIDINE kinases ,PROKARYOTES ,EUKARYOTES ,EUKARYOTIC genomes ,DETECTORS ,BIOLOGICAL evolution ,GENETIC transduction - Abstract
Histidine kinases (HKs) are primary sensor proteins that act in cell signaling pathways generically referred to as "two-component systems" (TCSs). TCSs are among the most widely distributed transduction systems used by both prokaryotic and eukaryotic organisms to detect and respond to a broad range of environmental cues. The structure and distribution of HK proteins are now well documented in prokaryotes, but information is still fragmentary for eukaryotes. Here, we have taken advantage of recent genomic resources to explore the structural diversity and the phylogenetic distribution of HKs in the prominent eukaryotic supergroups. Searches of the genomes of 67 eukaryotic species spread evenly throughout the phylogenetic tree of life identified 748 predicted HK proteins. Independent phylogenetic analyses of predicted HK proteins were carried out for each of the major eukaryotic supergroups. This allowed most of the compiled sequences to be categorized into previously described HK groups. Beyond the phylogenetic analysis of eukaryotic HKs, this study revealed some interesting findings: 1) characterization of some previously undescribed eukaryotic HK groups with predicted functions putatively related to physiological traits; 2) discovery of HK groups that were previously believed to be restricted to a single kingdom in additional supergroups, and 3) indications that some evolutionary paths have led to the appearance, transfer, duplication, and loss of HK genes in some phylogenetic lineages. This study provides an unprecedented overview of the structure and distribution of HKs in the Eukaryota and represents a first step toward deciphering the evolution of TCS signaling in living organisms. [ABSTRACT FROM AUTHOR]
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- 2019
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39. Transition from physical activity to inactivity increases skeletal muscle miR-148b content and triggers insulin resistance
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Gastebois, Caroline, primary, Chanon, Stéphanie, additional, Rome, Sophie, additional, Durand, Christine, additional, Pelascini, Elise, additional, Jalabert, Audrey, additional, Euthine, Vanessa, additional, Pialoux, Vincent, additional, Blanc, Stéphane, additional, Simon, Chantal, additional, and Lefai, Etienne, additional
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- 2016
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40. Major Sensing Proteins in Pathogenic Fungi: The Hybrid Histidine Kinase Family
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Hérivaux, Anaïs, primary, So, Yee-Seul, additional, Gastebois, Amandine, additional, Latgé, Jean-Paul, additional, Bouchara, Jean-Philippe, additional, Bahn, Yong-Sun, additional, and Papon, Nicolas, additional
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- 2016
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41. SUN proteins belong to a novel family of β-(1,3)-glucan-modifying enzymes involved in fungal morphogenesis
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Christine Schmitt, Christophe d'Enfert, Audrey Nesseir, Anne Beauvais, Patrick England, Vishukumar Aimanianda, Rémi Beau, Arnaud Firon, Marie-Christine Prévost, Amandine Gastebois, Sophie Bachellier-Bassi, Jean-Paul Latgé, Isabelle Mouyna, Aspergillus, Institut Pasteur [Paris], Biologie et Pathogénicité fongiques, Institut Pasteur [Paris]-Institut National de la Recherche Agronomique (INRA), Microscopie ultrastructurale (plate-forme), Biochimie et Biophysique des Macromolécules (Plate-forme), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), This work was supported by grants from the European Commission (Galar Fungail 2, MRTN-CT-2003-504148, FINSysB, PITN-GA-2008-214004) (to C. d. E.) and the European Science Foundation (ESF) Fuminomics, Partenariat Sanofi-aventis-Aviesan (ITMO Maladies Infectieuses, Sanofi Aventis Research & Development TSU ID (SAR&D) TSU ID/Sanofi-Pasteur), and Agence Nationale de Recherches (ANR) (Grant 09-BLAN-0287) (to J. P. L.), ANR-09-BLAN-0287,REMODELE,Nouvelles voies métaboliques essentielles pour la biosynthèse de la paroi des champignons(2009), European Project: 214004,PEOPLE,FP7-PEOPLE-2007-1-1-ITN,FINSYSB(2008), Institut Pasteur [Paris] (IP), Biologie et Pathogénicité fongiques (BPF), Institut National de la Recherche Agronomique (INRA)-Institut Pasteur [Paris] (IP), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Institut National de la Recherche Agronomique (INRA)-Institut Pasteur [Paris], Biophysique des macromolécules et de leurs interactions, ANR Grant 09-BLAN-0287,ANR Grant 09-BLAN-0287,Grant 09-BLAN-0287, Institut National de la Recherche Agronomique (INRA) - Institut Pasteur [Paris], Microscopie ultrastructurale - Ultrapole (CITECH), Biophysique des macromolécules et leurs interactions, and Institut Pasteur [Paris] - Centre National de la Recherche Scientifique (CNRS)
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Hyphal growth ,MESH : Spores, Fungal ,MESH : Molecular Sequence Data ,Glycosylation ,MESH: Sequence Homology, Amino Acid ,Conidiation ,Gene Expression ,Oligosaccharides ,Glycobiology and Extracellular Matrices ,MESH: Amino Acid Sequence ,Biochemistry ,Aspergillus fumigatus ,Cell Wall ,Gene Expression Regulation, Fungal ,Candida albicans ,Morphogenesis ,MESH : Fungal Proteins ,skin and connective tissue diseases ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,0303 health sciences ,integumentary system ,MESH : Amino Acid Sequence ,Hydrolysis ,MESH : Glycosylation ,Glucan Hydrolase Activity ,SUN ,MESH : Protein Binding ,MESH : Glycoside Hydrolases ,Spores, Fungal ,MESH: Glycosylation ,MESH : Sequence Homology, Amino Acid ,Cell biology ,[SDV] Life Sciences [q-bio] ,Aspergillus ,CELL-WALL BIOGENESIS ,MOTOR-LIKE DOMAIN ,ASPERGILLUS-FUMIGATUS ,CANDIDA-ALBICANS ,SCHIZOSACCHAROMYCES-POMBE ,SACCHAROMYCES-CEREVISIAE ,BIOFILM FORMATION ,BETA-GLUCOSIDASE ,CHITIN SYNTHASES ,GENE ,MESH: Fungal Proteins ,MESH: Aspergillus fumigatus ,MESH: Gene Expression Regulation, Fungal ,MESH: Hydrolysis ,Protein Binding ,CAZy ,MESH: Gene Expression ,Hypha ,MESH : Candida albicans ,Glycoside Hydrolases ,Molecular Sequence Data ,Hyphae ,MESH: Glycoproteins ,Biology ,Microbiology ,Cell wall ,Fungal Proteins ,03 medical and health sciences ,MESH : Hydrolysis ,MESH: Hyphae ,MESH: Spores, Fungal ,MESH : Gene Expression Regulation, Fungal ,MESH: Glycoside Hydrolases ,MESH: Protein Binding ,Amino Acid Sequence ,Molecular Biology ,030304 developmental biology ,MESH : Protein Processing, Post-Translational ,Glycoproteins ,MESH: Molecular Sequence Data ,Sequence Homology, Amino Acid ,030306 microbiology ,MESH: Candida albicans ,MESH : Oligosaccharides ,Cell Biology ,biology.organism_classification ,MESH : Glycoproteins ,[SDV.MP.MYC] Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,Yeast ,MESH: Morphogenesis ,MESH : Gene Expression ,MESH : Morphogenesis ,MESH : Aspergillus fumigatus ,MESH: Protein Processing, Post-Translational ,MESH : Hyphae ,Carbohydrate-binding Protein ,Protein Processing, Post-Translational ,MESH: Oligosaccharides ,Biogenesis - Abstract
International audience; BACKGROUND:SUN proteins are involved in yeast morphogenesis, but their function is unknown.RESULTS:SUN protein plays a role in the Aspergillus fumigatus morphogenesis. Biochemical properties of recombinant SUN proteins were elucidated.CONCLUSION:Both Candida albicans and Aspergillus fumigatus sun proteins show a β-(1,3)-glucanase activity.SIGNIFICANCE:The mode of action of SUN proteins on β-(1,3)-glucan is unique, new, and original. In yeasts, the family of SUN proteins has been involved in cell wall biogenesis. Here, we report the characterization of SUN proteins in a filamentous fungus, Aspergillus fumigatus. The function of the two A. fumigatus SUN genes was investigated by combining reverse genetics and biochemistry. During conidial swelling and mycelial growth, the expression of AfSUN1 was strongly induced, whereas the expression of AfSUN2 was not detectable. Deletion of AfSUN1 negatively affected hyphal growth and conidiation. A closer examination of the morphological defects revealed swollen hyphae, leaky tips, intrahyphal growth, and double cell wall, suggesting that, like in yeast, AfSun1p is associated with cell wall biogenesis. In contrast to AfSUN1, deletion of AfSUN2 either in the parental strain or in the AfSUN1 single mutant strain did not affect colony and hyphal morphology. Biochemical characterization of the recombinant AfSun1p and Candida albicans Sun41p showed that both proteins had a unique hydrolysis pattern: acting on β-(1,3)-oligomers from dimer up to insoluble β-(1,3)-glucan. Referring to the CAZy database, it is clear that fungal SUN proteins represent a new family of glucan hydrolases (GH132) and play an important morphogenetic role in fungal cell wall biogenesis and septation.
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- 2013
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42. Phylogenetic and functional analysis of Aspergillus fumigatus MGTC, a fungal protein homologous to a bacterial virulence factor
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Rémi Beau, Anne-Beatrice Blanc Potard, Isabelle Mouyna, Amandine Gastebois, Simonetta Gribaldo, Jean-Paul Latgé, Aspergillus, Institut Pasteur [Paris], Dynamique des interactions membranaires normales et pathologiques (DIMNP), Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS), Biologie Moléculaire du Gène chez les Extrêmophiles (BMGE), and Institut Pasteur [Paris] (IP)
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Virulence Factors ,[SDV]Life Sciences [q-bio] ,education ,Molecular Sequence Data ,Virulence ,Sequence Homology ,Mycology ,Applied Microbiology and Biotechnology ,Microbiology ,Aspergillus fumigatus ,Fungal Proteins ,03 medical and health sciences ,Phylogenetics ,Cluster Analysis ,Magnesium ,Amino Acid Sequence ,skin and connective tissue diseases ,Gene ,Cation Transport Proteins ,Phylogeny ,030304 developmental biology ,0303 health sciences ,Fungal protein ,Ecology ,biology ,Sequence Homology, Amino Acid ,030306 microbiology ,Pathogenic fungus ,biology.organism_classification ,Transport protein ,Amino Acid ,Bacteria ,Food Science ,Biotechnology - Abstract
MgtC is important for the survival of several bacterial pathogens in macrophages and for growth under magnesium limitation. Among eukaryotes, a gene homologous to mgtC was found only in the pathogenic fungus Aspergillus fumigatus . Our data show that the A. fumigatus MgtC (AfuMgtC) protein does not have the same function as the bacterial MgtC proteins.
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- 2011
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43. β(1-3)Glucanosyltransferase Gel4p Is Essential for Aspergillus fumigatus ▿
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Gastebois, Amandine, Fontaine, Thierry, Latgé, Jean-Paul, Mouyna, Isabelle, Latge, J.-P., Aspergillus, Institut Pasteur [Paris] (IP), and Institut Pasteur [Paris]
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Glycosylphosphatidylinositols ,Glycosylphosphatidylinositol ,Genes, Fungal ,Biology ,Microbiology ,Gene Expression Regulation, Enzymologic ,Aspergillus fumigatus ,Pathogenesis ,Fungal Proteins ,03 medical and health sciences ,chemistry.chemical_compound ,Phylogenetics ,Gene Expression Regulation, Fungal ,MESH: Phylogeny ,Molecular Biology ,Gene ,Mycelium ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,Phylogeny ,030304 developmental biology ,MESH: Genes, Essential ,0303 health sciences ,Fungal protein ,Genes, Essential ,030306 microbiology ,MESH: Gene Expression Regulation, Enzymologic ,Glucan Endo-1,3-beta-D-Glucosidase ,General Medicine ,Articles ,Gene deletion ,biology.organism_classification ,MESH: Mycelium ,Chromatography, Ion Exchange ,MESH: Chromatography, Ion Exchange ,MESH: Glucan Endo-1,3-beta-D-Glucosidase ,MESH: Glycosylphosphatidylinositols ,chemistry ,MESH: Gene Deletion ,MESH: Fungal Proteins ,MESH: Aspergillus fumigatus ,MESH: Genes, Fungal ,MESH: Gene Expression Regulation, Fungal ,Gene Deletion - Abstract
The β(1-3)glucanosyltransferase GEL family of Aspergillus fumigatus contains 7 genes, among which only 3 are expressed during mycelial growth. The role of the GEL4 gene was investigated in this study. Like the other Gelps, it encodes a glycosylphosphatidylinositol (GPI)-anchored protein. In contrast to the other β(1-3)glucanosyltransferases analyzed to date, it is essential for this fungal species.
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- 2010
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44. A Multifaceted Study of Scedosporium boydii Cell Wall Changes during Germination and Identification of GPI-Anchored Proteins
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Ghamrawi, Sarah, primary, Gastebois, Amandine, additional, Zykwinska, Agata, additional, Vandeputte, Patrick, additional, Marot, Agnès, additional, Mabilleau, Guillaume, additional, Cuenot, Stéphane, additional, and Bouchara, Jean-Philippe, additional
- Published
- 2015
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45. Circulating MiRNAs of ‘Asian Indian Phenotype’ Identified in Subjects with Impaired Glucose Tolerance and Patients with Type 2 Diabetes
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Prabu, Paramasivam, primary, Rome, Sophie, additional, Sathishkumar, Chandrakumar, additional, Aravind, Sankaramoorthy, additional, Mahalingam, Balakumar, additional, Shanthirani, Coimbatore Subramanian, additional, Gastebois, Caroline, additional, Villard, Audrey, additional, Mohan, Viswanathan, additional, and Balasubramanyam, Muthuswamy, additional
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- 2015
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46. Characterization of a new β(1-3)glucan branching activity of Aspergillus fumigatus
- Author
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Isabelle Mouyna, Jean-Paul Latgé, Cécile Clavaud, Amandine Gastebois, Thierry Fontaine, Muriel Delepierre, Catherine Simenel, Bernadette Coddeville, Aspergillus, Institut Pasteur [Paris], Résonance Magnétique Nucléaire des Biomolécules, Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS), Unité de Glycobiologie Structurale et Fonctionnelle UMR 8576 (UGSF), Institut National de la Recherche Agronomique (INRA)-Université de Lille-Centre National de la Recherche Scientifique (CNRS), Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 (UGSF), Université de Lille-Centre National de la Recherche Scientifique (CNRS)-Institut National de la Recherche Agronomique (INRA), Institut Pasteur [Paris] (IP), Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS), Université de Lille-Centre National de la Recherche Scientifique (CNRS), Institut Pasteur [Paris]-Centre National de la Recherche Scientifique ( CNRS ), Unité de Glycobiologie Structurale et Fonctionnelle - UMR 8576 ( UGSF ), and Institut National de la Recherche Agronomique ( INRA ) -Université de Lille-Centre National de la Recherche Scientifique ( CNRS )
- Subjects
Glycosylation ,beta-Glucans ,MESH : beta-Glucans ,MESH: Cellulases ,Mutant ,Glycobiology and Extracellular Matrices ,MESH : Blotting, Western ,MESH : Gas Chromatography-Mass Spectrometry ,Biochemistry ,Beta-glucan ,Aspergillus fumigatus ,chemistry.chemical_compound ,Cell Wall ,MESH: Nuclear Magnetic Resonance, Biomolecular ,MESH : Fungal Proteins ,Cellulases ,Laminaribiose ,[ SDV.MP.MYC ] Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,Chromatography, High Pressure Liquid ,[SDV.MP.MYC]Life Sciences [q-bio]/Microbiology and Parasitology/Mycology ,chemistry.chemical_classification ,0303 health sciences ,biology ,MESH: beta-Glucans ,Glucan Endo-1,3-beta-D-Glucosidase ,MESH : Glycosylation ,Oligosaccharide ,MESH: Glycosylation ,MESH: Glucan Endo-1,3-beta-D-Glucosidase ,MESH : Phenotype ,Phenotype ,Electrophoresis, Polyacrylamide Gel ,MESH: Fungal Proteins ,MESH : Mutation ,MESH: Aspergillus fumigatus ,MESH: Mutation ,Blotting, Western ,MESH : Nuclear Magnetic Resonance, Biomolecular ,MESH : Electrophoresis, Polyacrylamide Gel ,MESH: Phenotype ,Gas Chromatography-Mass Spectrometry ,Fungal Proteins ,Cell wall ,MESH : Chromatography, High Pressure Liquid ,03 medical and health sciences ,MESH: Cell Wall ,MESH: Blotting, Western ,MESH: Chromatography, High Pressure Liquid ,Nuclear Magnetic Resonance, Biomolecular ,Molecular Biology ,MESH : Cell Wall ,030304 developmental biology ,Aspergillus ,[ SDV ] Life Sciences [q-bio] ,030306 microbiology ,MESH : Glucan Endo-1,3-beta-D-Glucosidase ,Cell Biology ,biology.organism_classification ,MESH: Gas Chromatography-Mass Spectrometry ,Enzyme ,chemistry ,MESH : Aspergillus fumigatus ,Mutation ,MESH : Cellulases ,[ SDV.BBM.BS ] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Biomolecules [q-bio.BM] ,MESH: Electrophoresis, Polyacrylamide Gel - Abstract
International audience; A new HPLC method was developed to separate linear from beta(1-6)-branched beta(1-3)-glucooligosaccharides. This methodology has permitted the isolation of the first fungal beta(1-6)/beta(1-3)-glucan branching transglycosidase using a cell wall autolysate of Aspergillus fumigatus (Af). The encoding gene, AfBGT2 is an ortholog of AfBGT1, another transglycosidase of A. fumigatus previously analyzed (Mouyna, I., Hartland, R. P., Fontaine, T., Diaquin, M., Simenel, C., Delepierre, M., Henrissat, B., and Latgé, J. P. (1998) Microbiology 144, 3171-3180). Both enzymes release laminaribiose from the reducing end of a beta(1-3)-linked oligosaccharide and transfer the remaining chain to another molecule of the original substrate. The AfBgt1p transfer occurs at C-6 of the non-reducing end group of the acceptor, creating a kinked beta(1-3;1-6) linear molecule. The AfBgt2p transfer takes place at the C-6 of an internal group of the acceptor, resulting in a beta(1-3)-linked product with a beta(1-6)-linked side branch. The single Afbgt2 mutant and the double Afbgt1/Afbgt2 mutant in A. fumigatus did not display any cell wall phenotype showing that these activities were not responsible for the construction of the branched beta(1-3)-glucans of the cell wall.
- Published
- 2010
- Full Text
- View/download PDF
47. Cryogenic and Electrical Test Cryostat for Instrumented Superconductive RF Cavities (Chechia)
- Author
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J. Gastebois, P. Clay, R. Lange, G. Grygiel, J. P. Desvard, D. Sellmann, C. Mayri, R. Duthil, U. Knopf, F. Lejars, P. Pailler, and B. Petersen
- Subjects
Cryostat ,Materials science ,business.industry ,Instrumentation ,chemistry.chemical_element ,Particle accelerator ,Tuner ,Cryogenics ,Flow measurement ,law.invention ,Engineering ,Optics ,Nuclear magnetic resonance ,chemistry ,law ,Calibration ,business ,Helium - Abstract
This facility has been designed to carry out cryogenic RF quality factor (QRF) measurements, cold tuner tests, high order modes coupler tests, main coupler tests and full RF tests of superconducting cavities under real accelerator conditions (pulse mode, feedback loops, etc). The cryostat is built to receive one horizontally positioned cavity equipped with its helium vessel, its tuner and various RF couplers. The maximum heat load is ≈ 58 W (2.5 g/s) at 2 K for high power peak processing and ≈ 6 W (0.25 g/s) under normal conditions. QRF will be obtained from heat load measurements by LHe level variation and gas flow measurement at known temperature and pressure. The calibration is given by a DC electrical heater. The paper describes the design and the preliminary results of cryogenic performance tests of the cryostat itself.
- Published
- 1996
- Full Text
- View/download PDF
48. Status of the TTF Linac Injector
- Author
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Garvey, Terence, Bernard, M Y, Bourdon, J C, Chehab, R, Dufresne, P, Jacquemard, B, Mencik, M, Mouton, B, Omeich, M, Roch, M, Rodier, J, Roudier, P, Saury, J L, Solyak, N A, Taurigna-Quere, M, Thiery, Y, Aune, B, Desmons, M, Fusellier, J, Gastebois, J, Gougnaud, F, Gournay, J F, Jablonka, M, Joly, J M, Juillard, M, Long, H, Lussignol, Y, Mosnier, A, Phung Ngoc, B, Bühler, S, and Junquera, T
- Subjects
Accelerators and Storage Rings - Published
- 1996
49. Status report of the TTF capture cavity cryostat
- Author
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R. Chevrollier, N. Colombel, P. Blache, J. Gastebois, R. Panvier, S. Buhler, Tomas Junquera, Institut de Physique Nucléaire d'Orsay (IPNO), Centre National de la Recherche Scientifique (CNRS)-Institut National de Physique Nucléaire et de Physique des Particules du CNRS (IN2P3)-Université Paris-Sud - Paris 11 (UP11), Kittel P., and Robert, Suzanne
- Subjects
Cryostat ,Test facility ,Materials science ,Nuclear engineering ,DESY ,Particle accelerator ,Cryogenics ,Radiation shield ,Status report ,Linear particle accelerator ,law.invention ,Nuclear physics ,Engineering ,[PHYS.PHYS.PHYS-INS-DET] Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] ,law ,[PHYS.PHYS.PHYS-INS-DET]Physics [physics]/Physics [physics]/Instrumentation and Detectors [physics.ins-det] - Abstract
We describe the capture cavity cryostat, for the Tesla Test Facility at DESY in Hamburg, which was designed and is presently under assembly in France. We also discuss the construction of an ancillary feed box which is required for a preliminary cryogenic test prior to delivery.
- Published
- 1995
50. Phylogenetic and Functional Analysis of Aspergillus fumigatus MGTC, a Fungal Protein Homologous to a Bacterial Virulence Factor
- Author
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Gastebois, Amandine, primary, Blanc Potard, Anne-Beatrice, additional, Gribaldo, Simonetta, additional, Beau, Rémi, additional, Latgé, Jean Paul, additional, and Mouyna, Isabelle, additional
- Published
- 2011
- Full Text
- View/download PDF
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