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1. The IBEX Knowledge-Base: Achieving more together with open science

Author

Radtke, Andrea J., Anidi, Ifeanyichukwu, Arakkal, Leanne, Arroyo-Mejias, Armando, Beuschel, Rebecca T., Borner, Katy, Chu, Colin J., Clark, Beatrice, Clatworthy, Menna R., Colautti, Jake, Croteau, Joshua, Denha, Saven, Dever, Rose, Dutra, Walderez O., Fritzsche, Sonja, Fullam, Spencer, Gerner, Michael Y., Gola, Anita, Gollob, Kenneth J., Hernandez, Jonathan M., Hor, Jyh Liang, Ichise, Hiroshi, Jing, Zhixin, Jonigk, Danny, Kandov, Evelyn, Kastenmueller, Wolfgang, Koenig, Joshua F. E., Kothurkar, Aanandita, Kreins, Alexandra Y., Lamborn, Ian, Lin, Yuri, Morais, Katia Luciano Pereira, Lunich, Aleksandra, Luz, Jean C. S., MacDonald, Ryan B., Makranz, Chen, Maltez, Vivien I., Moriaty, Ryan V., Ocampo-Godinez, Juan M., Olyntho, Vitoria M., Padhan, Kartika, Remmert, Kirsten, Richoz, Nathan, Schrom, Edward C., Shang, Wanjing, Shi, Lihong, Shih, Rochelle M., Speranza, Emily, Stierli, Salome, Teichmann, Sarah A., Veres, Tibor Z., Vierhout, Megan, Wachter, Brianna T., Wade-Vallance, Adam K., Williams, Margaret, Zangger, Nathan, Germain, Ronald N., and Yaniv, Ziv

Subjects
Quantitative Biology - Tissues and Organs
Abstract

Iterative Bleaching Extends multipleXity (IBEX) is a versatile method for highly multiplexed imaging of diverse tissues. Based on open science principles, we created the IBEX Knowledge-Base, a resource for reagents, protocols and more, to empower innovation., Comment: 8 pages, 1 figure, 9 references

Published
2024

5. Systemic cytokines, chemokines and growth factors reveal specific and shared immunological characteristics in infectious cardiomyopathies

Author

Neves, Eula G.A, Koh, Carolina C., Padilha da Silva, José L., Passos, Lívia S.A., Villani, Fernanda N.A., dos Santos, Janete S.C., Menezes, Cristiane A.S., Silva, Vicente R., Tormin, Julia P.A.S., Evangelista, Guilherme F.B., Carvalho, Andréa Teixeira de, Rocha, Manoel Otávio da Costa, Nascimento, Bruno, Gollob, Kenneth John, Nunes, Maria do Carmo P., and Dutra, Walderez O.

Published
2021
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9. Distinct systemic immune networks define severe vs. mild COVID-19 in hematologic and solid cancer patients

Author

Pignataro-Oshiro, Flávio, primary, Figueiredo, Amanda B., additional, Galdino, Nayane A. L., additional, Morais, Katia L. P., additional, Dutra, Walderez O., additional, Silva, Bianca Grassi de Miranda, additional, Feriani, Diego, additional, Abrantes, Flávia de Azevedo, additional, Silva, Ivan Leonardo Avelino França e, additional, Filho, Jayr Schmidt, additional, Framil, Juliana Valéria de Souza, additional, Cesca, Marcelle Goldner, additional, Riechelmann, Rachel Simões Pimenta, additional, Batista, Marjorie V., additional, and Gollob, Kenneth J., additional

Published
2023
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10. Serodiagnosis and therapeutic monitoring of New-World tegumentary leishmaniasis using synthetic type-2 glycoinositolphospholipid-based neoglycoproteins

Author

Viana, Sayonara M., primary, Montoya, Alba L., additional, Carvalho, Augusto M., additional, de Mendonça, Brunele S., additional, Portillo, Susana, additional, Olivas, Janet J., additional, Karimi, Nasim H., additional, Estevao, Igor L., additional, Ortega-Rodriguez, Uriel, additional, Carvalho, Edgar M., additional, Dutra, Walderez O., additional, Maldonaldo, Rosa A., additional, Michael, Katja, additional, de Oliveira, Camila I., additional, and Almeida, Igor C., additional

Published
2022
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13. Cytotoxic CD4+ T cells driven by T-cell intrinsic IL-18R/MyD88 signaling predominantly infiltrate Trypanosoma cruzi-infected hearts

Author

Barbosa, Carlos-Henrique D, primary, Canto, Fábio B, primary, Gomes, Ariel, primary, Brandao, Layza M, additional, Lima, Jéssica R, additional, Melo, Guilherme A, additional, Granato, Alessandra, additional, Neves, Eula GA, additional, Dutra, Walderez O, additional, Oliveira, Ana-Carolina, additional, Nóbrega, Alberto, additional, and Bellio, Maria, additional

Published
2022
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14. Modulation of Regulatory T Cells Activity by Distinct CD80 and CD86 Interactions With CD28/CTLA-4 in Chagas Cardiomyopathy

Author

Pinto, Bruna F., primary, Medeiros, Nayara I., additional, Teixeira-Carvalho, Andrea, additional, Fiuza, Jacqueline A., additional, Eloi-Santos, Silvana M., additional, Nunes, Maria C. P., additional, Silva, Silvana A., additional, Fontes-Cal, Tereza C. M., additional, Belchior-Bezerra, Mayara, additional, Dutra, Walderez O., additional, Correa-Oliveira, Rodrigo, additional, and Gomes, Juliana A. S., additional

Published
2022
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15. THE IMMUNE RESPONSE IN CHAGAS DISEASE AND ITS ROLE IN THE VARIABILITY OF CLINICAL EXPRESSION

Author

Dutra Walderez O, NS Hojo-Souza, and Kenneth J. Gollob

Subjects
Medicine, Public aspects of medicine, RA1-1270
Abstract

Durante los últimos años nuestro laboratorio ha estado interesado en la comprensión de los mecanismos que coordinan el establecimiento de la respuesta inmune protectora frente a patógenos en las enfermedades humanas. Tras la infección con un patógeno, ocurren una serie de eventos dentro del huesped que culminarán con el control del patógeno, lo que a menudo conduce a la curación de la infección o bien a la falta de un control adecuado y la cronificación de la infección. Debido a la alta adaptación del parásito a sus anfitriones, lo que refleja millones de años de coevolución, el resultado de una infección parasitaria es a menudo la cronificación. En este punto, tiene lugar un evento intrigante: a pesar del control de la parasitemia, la cronificación de la infección está aso- ciada con el desarrollo de enfermedad. En las poblaciones endémicas, la gran mayoría de los sujetos desarrollan lo que se puede considerar una forma clínica "leve" de la enfermedad, lo que también refleja la adaptación del parásito a su huesped. Sin embargo, un porcentaje im- portante de los individuos infectados desarrollan lo que se considera formas "graves" de la enfermedad. Esto es cierto para muchas enfermedades parasitarias como la leishmaniasis, la esquistosomiasis y la enfermedad de Chagas, la cual centra esta revisión. En este trabajo vamos a discutir los mecanismos que impulsan el establecimiento de la respuesta inmune protectora frente a patógenos, los cuales están directamente relacionados con el establecimiento de las formas leves o graves de la enfermedad de Chagas, teniendo en cuenta los factores relacionados con el huesped.

Published
2013

16. Progression of Mitral Regurgitation in Rheumatic Valve Disease: Role of Left Atrial Remodeling

Author

Gomes, Nayana F. A., primary, Silva, Vicente Rezende, additional, Levine, Robert A., additional, Esteves, William A. M., additional, de Castro, Marildes Luiza, additional, Passos, Livia S. A., additional, Dal-Bianco, Jacob P., additional, Pantaleão, Alexandre Negrão, additional, da Silva, Jose Luiz Padilha, additional, Tan, Timothy C., additional, Dutra, Walderez O., additional, Aikawa, Elena, additional, Hung, Judy, additional, and Nunes, Maria Carmo P., additional

Published
2022
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17. Prothymosin Alpha: A Novel Contributor to Estradiol Receptor Alpha–Mediated CD8 + T-Cell Pathogenic Responses and Recognition of Type 1 Collagen in Rheumatic Heart Valve Disease

Author

Passos, Livia S.A., primary, Jha, Prabhash K., additional, Becker-Greene, Dakota, additional, Blaser, Mark C., additional, Romero, Dayanna, additional, Lupieri, Adrien, additional, Sukhova, Galina K., additional, Libby, Peter, additional, Singh, Sasha A., additional, Dutra, Walderez O., additional, Aikawa, Masanori, additional, Levine, Robert A., additional, Nunes, Maria C.P., additional, and Aikawa, Elena, additional

Published
2022
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18. T-Cell Subpopulations Exhibit Distinct Recruitment Potential, Immunoregulatory Profile and Functional Characteristics in Chagas versus Idiopathic Dilated Cardiomyopathies

Author

Neves, Eula G. A., primary, Koh, Carolina C., additional, Souza-Silva, Thaiany G., additional, Passos, Lívia Silva Araújo, additional, Silva, Ana Carolina C., additional, Velikkakam, Teresiama, additional, Villani, Fernanda, additional, Coelho, Janete Soares, additional, Brodskyn, Claudia Ida, additional, Teixeira, Andrea, additional, Gollob, Kenneth J., additional, Nunes, Maria do Carmo P., additional, and Dutra, Walderez O., additional

Published
2022
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21. Proinflammatory Matrix Metalloproteinase-1 Associates With Mitral Valve Leaflet Disruption Following Percutaneous Mitral Valvuloplasty

Author

Passos, Livia S. A., primary, Becker-Greene, Dakota, additional, Braulio, Renato, additional, Le, Thanh-Dat, additional, Gelape, Cláudio L., additional, de Almeida, Luís Felipe R., additional, Rocha, Divino Pedro A., additional, Gomes, Carlos Augusto P., additional, Esteves, William A. M., additional, Passaglia, Luiz G., additional, Dal-Bianco, Jacob P., additional, Levine, Robert A., additional, Aikawa, Masanori, additional, Hung, Judy, additional, Dutra, Walderez O., additional, Nunes, Maria Carmo P., additional, and Aikawa, Elena, additional

Published
2022
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22. Prognosis of chronic Chagas heart disease and other pending clinical challenges

Author

Torres, Rosália Morais, primary, Correia, Dalmo, additional, Nunes, Maria do Carmo Pereira, additional, Dutra, Walderez O, additional, Talvani, André, additional, Sousa, Andréa Silvestre, additional, Mendes, Fernanda de Souza Nogueira Sardinha, additional, Scanavacca, Maurício Ibrahim, additional, Pisani, Cristiano, additional, Moreira, Maria da Consolação Vieira, additional, de Souza, Dilma do Socorro Moraes, additional, de Oliveira Junior, Wilson, additional, Martins, Silvia Marinho, additional, and Dias, João Carlos Pinto, additional

Published
2022
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24. Crosstalk Between Plasma Cytokines, Inflammation, and Liver Damage as a New Strategy to Monitoring NAFLD Progression

Author

Fontes-Cal, Tereza C. M., primary, Mattos, Rafael T., additional, Medeiros, Nayara I., additional, Pinto, Bruna F., additional, Belchior-Bezerra, Mayara, additional, Roque-Souza, Bruna, additional, Dutra, Walderez O., additional, Ferrari, Teresa C. A., additional, Vidigal, Paula V. T., additional, Faria, Luciana C., additional, Couto, Cláudia A., additional, and Gomes, Juliana A. S., additional

Published
2021
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27. Caracterização Histológica das Lesões da Valva Mitral de Pacientes com Cardiopatia Reumática

Author

Gomes, Nayana F. A., primary, Pascoal-Xavier, Marcelo A., additional, Passos, Livia S. A., additional, Paula, Thiago Mendonça Nunes, additional, Aguiar, João Marcelo de Souza, additional, Guarçoni, Felipe Vieira, additional, Nassif, Maria Cecília Landim, additional, Gelape, Claudio Leo, additional, Braulio, Renato, additional, Costa, Paulo Henrique N., additional, Passaglia, Luiz Guilherme, additional, Martins, Raquel Braga, additional, Dutra, Walderez O., additional, and Nunes, Maria Carmo P., additional

Published
2021
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28. Decreased Cytokine Plasma Levels and Changes in T-Cell Activation Are Associated With Hemodynamic Improvement and Clinical Outcomes After Percutaneous Mitral Commissurotomy in Patients With Rheumatic Mitral Stenosis

Author

Silva, Vicente R., primary, Neves, Eula G. A., additional, Passos, Lívia S. Araújo, additional, Cristina de Melo, Flávia, additional, Teixeira-Carvalho, Andrea, additional, Nassif, Maria Cecília L., additional, Junqueira, Lucas Lodi, additional, Aikawa, Elena, additional, Dutra, Walderez O., additional, and Nunes, Maria Carmo P., additional

Published
2021
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29. Cytokine gene functional polymorphisms and phenotypic expression as predictors of evolution from latent to clinical rheumatic heart disease

Author

Tormin, Julia P.A.S., primary, Nascimento, Bruno R., additional, Sable, Craig A., additional, da Silva, Jose Luiz P., additional, Brandao-de-Resende, Camilo, additional, Rocha, Luiz Paulo C., additional, Pinto, Cecília H.R., additional, Neves, Eula Graciele A., additional, Macedo, Frederico V.B., additional, Fraga, Clara L., additional, Oliveira, Kaciane K.B., additional, Diamantino, Adriana C., additional, Ribeiro, Antônio Luiz P., additional, Beaton, Andrea Z., additional, Nunes, Maria Carmo P., additional, and Dutra, Walderez O., additional

Published
2021
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30. Cutaneous leishmaniasis during pregnancy: exuberant lesions and potential fetal complications

Author

Morgan, Daniel J., Guimaraes, Luiz H., Machado, Paulo R.L., D'Oliveira, Argemiro Jr., Almeida, Roque P., Lago, Ednaldo L., Faria, Daniela R., Tafuri, Wagner L., Dutra, Walderez O., and Carvalho, Edgar M.

Subjects
Leishmaniasis -- Complications and side effects, Leishmaniasis -- Research, Pregnancy -- Health aspects, Pregnancy, Complications of -- Risk factors, Pregnancy, Complications of -- Research, Health, Health care industry
Published
2007

32. Prothymosin Alpha: A Novel Contributor to Estradiol Receptor Alpha-Mediated CD8+ T-Cell Pathogenic Responses and Recognition of Type 1 Collagen in Rheumatic Heart Valve Disease.

Author

Passos, Livia S.A., Jha, Prabhash K., Becker-Greene, Dakota BA, Blaser, Mark C., Romero, Dayanna, Lupieri, Adrien, Sukhova, Galina K., Libby, Peter, Singh, Sasha A., Dutra, Walderez O., Aikawa, Masanori, Levine, Robert A., Nunes, Maria C.P., Aikawa, Elena, and Becker-Greene, Dakota

Published
2022
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33. Gene expression network analyses during infection with virulent and avirulent Trypanosoma cruzi strains unveil a role for fibroblasts in neutrophil recruitment and activation

Author

Oliveira, Antonio Edson R., primary, Pereira, Milton C. A., additional, Belew, Ashton T., additional, Ferreira, Ludmila R. P., additional, Pereira, Larissa M. N., additional, Neves, Eula G. A., additional, Nunes, Maria do Carmo P., additional, Burleigh, Barbara A., additional, Dutra, Walderez O., additional, El-Sayed, Najib M., additional, Gazzinelli, Ricardo T., additional, and Teixeira, Santuza M. R., additional

Published
2020
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34. GENOTYPIC AND PHENOTYPIC EXPRESSION OF IL2G/T AND IL-8 HELP PREDICT ESTABLISHMENT OF CLINICAL RHEUMATIC HEART DISEASE: DATA FROM THE PROVAR STUDY

Author

Santos, Julia A., primary, Nascimento, Bruno Ramos, additional, Nunes, Maria Carmo, additional, Brandão-de-Resende, Camilo, additional, Beaton, Andrea Z., additional, Ribeiro, Antonio L., additional, Oliveira, Kaciane K.B., additional, Franco, Juliane, additional, Fraga, Clara L., additional, Costa, Waydder Antônio A., additional, Macedo, Frederico V.B., additional, Filho, Domingos Sávio G. Ferreira, additional, Sable, Craig A., additional, and Dutra, Walderez O., additional

Published
2020
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39. Exacerbated inflammatory cellular immune response characteristics of HAM/TSP is observed in a large proportion of HTLV-I asymptomatic carriers

Author

Gollob Kenneth J, Dutra Walderez O, Melo Ailton, Magalhães Elza, de Jesus Amélia, Muniz André, Porto Aurélia, Santos Silvane, and Carvalho Edgar M

Subjects
HTLV-I, HAM/TSP, HTLV-I carriers, Immunological response in HTLV-I infection, Markers of HAM/TSP progression., Infectious and parasitic diseases, RC109-216
Abstract

Abstract Background A small fraction of Human T cell Leukemia Virus type-1 (HTLV-I) infected subjects develop a severe form of myelopathy. It has been established that patients with HTLV-I associated myelopathy/tropical spastic paraparesis (HAM/TSP) show an exaggerated immune response when compared with the immunological response observed in HTLV-I asymptomatic carriers. In this study the immunological responses in HAM/TSP patients and in HTLV-I asymptomatic carriers were compared using several immunological assays to identify immunological markers associated with progression from infection to disease. Methods Immunoproliferation assays, cytokine levels of unstimulated cultures, and flow cytometry analysis were used to evaluate the studied groups. Nonparametric tests (Mann-Whitney U test and Wilcoxon matched-pairs signed ranks) were used to compare the difference between the groups. Results Although both groups showed great variability, HAM/TSP patients had higher spontaneous lymphoproliferation as well as higher IFN-γ levels in unstimulated supernatants when compared with asymptomatic carriers. Flow cytometry studies demonstrated a high frequency of inflammatory cytokine (IFN-γ and TNF-α) producing lymphocytes in HAM/TSP as compared to the asymptomatic group. This difference was accounted for mainly by an increase in CD8 cell production of these cytokines. Moreover, the HAM/TSP patients also expressed an increased frequency of CD28-/CD8+ T cells. Since forty percent of the asymptomatic carriers had spontaneous lymphoproliferation and IFN-γ production similar to HAM/TSP patients, IFN-γ levels were measured eight months after the first evaluation in some of these patients to observe if this was a transient or a persistent situation. No significant difference was observed between the means of IFN-γ levels in the first and second evaluation. Conclusions The finding that a large proportion of HTLV-I carriers present similar immunological responses to those observed in HAM/TSP, strongly argues for further studies to evaluate these parameters as markers of HAM/TSP progression.

Published
2004
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40. Polarized Th2 like cells, in the absence of Th0 cells, are responsible for lymphocyte produced IL-4 in high IgE-producer schistosomiasis patients

Author

Soares-Silveira Alda, Roberts Morven, Fraga Lúcia, Cecchini Luiza, Dunne David, Correa-Oliveira Rodrigo, Dutra Walderez O, Webster Michelle, Yssel Hans, and Gollob Kenneth J

Subjects
Immunologic diseases. Allergy, RC581-607
Abstract

Abstract Background Human resistance to re-infection with S. mansoni is correlated with high levels of anti-soluble adult worm antigens (SWAP) IgE. Although it has been shown that IL-4 and IL-5 are crucial in establishing IgE responses in vitro, the active in vivo production of these cytokines by T cells, and the degree of polarization of Th2 vs. Th0 in human schistosomiasis is not known. To address this question, we determined the frequency of IL-4 and IFN-γ or IL-5 and IL-2 producing lymphocytes from schistosomiasis patients with high or low levels of IgE anti-SWAP. Results Our analysis showed that high and low IgE-producers responded equally to schistosomiasis antigens as determined by proliferation. Moreover, patients from both groups displayed similar percentages of circulating lymphocytes. However, high IgE-producers had an increased percentage of activated CD4+ T cells as compared to the low IgE-producers. Moreover, intracellular cytokine analysis, after short-term stimulation with anti-CD3/CD28 mAbs, showed that IgE high-producers display an increase in the percentage of T lymphocytes expressing IL-4 and IL-5 as compared to IgE low-responders. A coordinate control of the frequency of IL-4 and IL-5 producing lymphocytes in IgE high, but not IgE low-responders, was observed. Conclusions High IgE phenotype human schistosomiasis patients exhibit a coordinate regulation of IL-4 and IL-5 producing cells and the lymphocyte derived IL-4 comes from true polarized Th2 like cells, in the absence of measurable Th0 cells as measured by co-production of IL-4 and IFN-γ.

Published
2002
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45. Interleukin-1 gene polymorphisms and toxoplasmic retinochoroiditis

Author

Cordeiro, Cynthia A., Moreira, Paula R., Costa, Germano C., Dutra, Walderez O., Campos, Wesley R., Oréfice, Fernando, and Teixeira, Antônio L.

Subjects
Male, Polymorphism, Genetic, Chorioretinitis, Genotype, Case-Control Studies, Interleukin-1alpha, Interleukin-1beta, Humans, Female, Toxoplasmosis, Ocular, Alleles, Research Article
Abstract

Purpose It has been proposed that cytokine gene polymorphisms can predispose individuals to disease by enhancing inflammatory processes. Considering the relevance of interleukin-1 (IL-1) in the pathogenesis of toxoplasmic retinochoroiditis (TR), we investigated whether IL1A −889 C/T and IL1B +3954C/T promoter polymorphisms are associated with TR in humans. Methods We performed a cross-sectional study that involved 100 Brazilian TR patients and 100 age- and gender-matched control subjects. Genomic DNA was obtained from oral swabs of all participants and amplified using polymerase chain reaction (PCR) with specific primers flanking the locus −889 of IL1A and +3954 of IL1B. PCR products were submitted to digestion and analyzed by PAGE to distinguish C and T alleles. Results There was no significant difference in the genotype or allele distributions of the IL1A −889 C/T and IL1B +3954C/T polymorphisms in patients with TR when compared with controls. However, in a subgroup analysis, the frequency of genotype and allele distributions of IL1A −889 C/T differed significantly between TR patients with and without recurrent episodes. Conclusion This study suggests that the genotypes related with a high production of IL-1a may be associated with the recurrence of TR.

Published
2008

46. Differential Expression of Matrix Metalloproteinases 2, 9 and Cytokines by Neutrophils and Monocytes in the Clinical Forms of Chagas Disease

Author

Medeiros, Nayara I., primary, Fares, Rafaelle C. G., additional, Franco, Eliza P., additional, Sousa, Giovane R., additional, Mattos, Rafael T., additional, Chaves, Ana T., additional, Nunes, Maria do Carmo P., additional, Dutra, Walderez O., additional, Correa-Oliveira, Rodrigo, additional, Rocha, Manoel O. C., additional, and Gomes, Juliana A. S., additional

Published
2017
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49. Vasoactive intestinal peptide degradation might influence Interleukin-17 expression in cardiac chagasic patients.

Author

Beltrão Pereira, Francielle, Dutra, Walderez O., Gollob, Kenneth J., Afonso Reis, Edna, Grossi de Oliveira, Ana Laura, Otávio da Costa Rocha, Manoel, and Alves da Silva Menezes, Cristiane

Abstract

The vasoactive intestinal peptide (VIP) expression is lower in cardiac chagasic patients and is related to worse cardiac function. The reduction of VIP in patients with Chagas disease may be a result of its enhanced degradation. To test this hypothesis, the tryptase and chymase expression was evaluated. We also related VIP levels with interleukin-17 (IL- 17) expression since VIP may modulate IL-17 production. Plasma levels of chymase were higher in chagasic patients. Conversely, VIP/chymase and VIP/tryptase ratios were lower in chagasic patients when compared to non-infected individuals. Besides, the VIP/chymase ratio was lower in chagasic cardiac patients in comparison with the indeterminate group. A positive correlation between tryptase and chymase levels was observed in chagasic cardiac patients. In relation to IL-17, we observed a higher expression of this cytokine in the cardiac form of the disease than in the indeterminate form. IL-17/VIP ratio was higher in the cardiac form in comparison with non-infected or indeterminate form. These results suggest that the low levels of VIP observed in chagasic patients could be due to an increased production of chymase and/or to the additive effect of the interaction between chymase and tryptase in the cardiac form. Moreover, the decreased VIP expression may contribute to the increase of IL-17 in chagasic cardiac patients. [ABSTRACT FROM AUTHOR]

Published
2018
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