242 results on '"Daniel K. Podolsky"'
Search Results
2. SLCO3A1, A novel crohn's disease-associated gene, regulates nf-κB activity and associates with intestinal perforation.
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Shu-Chen Wei, Yan-Yin Tan, Meng-Tzu Weng, Liang-Chuan Lai, Jen-Hao Hsiao, Eric Y Chuang, Chia-Tung Shun, Deng-Cheng Wu, Ai-Wen Kao, Chiao-Shung Chuang, Yen-Hsuan Ni, Ming-Jium Shieh, Chien-Chih Tung, Yun Chen, Cheng-Yi Wang, Ramnik J Xavier, Daniel K Podolsky, and Jau-Min Wong
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Medicine ,Science - Abstract
Background & aimsTo date, only one gene (TNFSF15) has been identified and validated as a Crohn's disease (CD)-associated gene in non-Caucasian populations. This study was designed to identify novel CD-associated single nucleotide polymorphisms (SNPs)/genes and to validate candidate genes using a functional assay.MethodsSNPs from 16 CD patients and 16 age- and sex-matched control patients were analyzed using Illumina platform analysis. Subsequently, we expanded the study and followed 53 CD patients and 41 control patients by Sequenom MassArray analysis. Quantitative PCR and immunohistochemical staining were performed to assess mRNA and protein expression of the candidate gene on tissue isolated from CD patients. Genotype was correlated with CD phenotypes. Finally, the candidate gene was cloned and its effect on NF-κB activity assessed using a reporter luciferase assay.ResultsSLCO3A1 (rs207959) reached statistical significance in the first-stage analysis (P = 2.3E-02) and was further validated in the second-stage analysis (P = 1.0E-03). Genotype and phenotype analysis showed that the rs207959 (T) allele is a risk allele that alters SLCO3A1 mRNA expression and is associated with intestinal perforation in CD patients. Higher levels of mRNA and protein expression of SLCO3A1 were seen in CD patients compared with the control group. Overexpression of SLCO3A1 induced increased NF-κB activity and increased phosphorylation of P65, ERK, and JNK. Nicotine augmented the activation of NF-κB in the presence of SLCO3A1.ConclusionsSLCO3A1, a novel CD-associated gene, mediates inflammatory processes in intestinal epithelial cells through NF-κB transcription activation, resulting in a higher incidence of bowel perforation in CD patients.
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- 2014
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3. Early Evidence of the Effect of SARS-CoV-2 Vaccine at One Medical Center
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William C. Daniel, Marc A. Nivet, John J. Warner, and Daniel K. Podolsky
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2019-20 coronavirus outbreak ,Emergency Use Authorization ,COVID-19 Vaccines ,Coronavirus disease 2019 (COVID-19) ,viruses ,Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) ,030204 cardiovascular system & hematology ,Hospitals, University ,03 medical and health sciences ,0302 clinical medicine ,Correspondence ,Humans ,Medicine ,030212 general & internal medicine ,skin and connective tissue diseases ,BNT162 Vaccine ,SARS-CoV-2 ,business.industry ,Incidence (epidemiology) ,fungi ,COVID-19 ,General Medicine ,Texas ,Virology ,respiratory tract diseases ,Personnel, Hospital ,body regions ,business ,2019-nCoV Vaccine mRNA-1273 ,Personnel hospital - Abstract
Effect of SARS-CoV-2 Vaccine at a Medical Center With the rollout of mRNA SARS-CoV-2 vaccines under emergency use authorization, dramatic decreases in the incidence of SARS-CoV-2 infections were se...
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- 2021
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4. Higgs-mediated optical amplification in a non-equilibrium superconductor
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Bertrand I. Halperin, Eugene Demler, Daniel K. Podolsky, Yao Wang, J. Ignacio Cirac, Mikhail D. Lukin, Andrea Cavalleri, Tao Shi, Gregor Jotzu, and Michele Buzzi
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Physics ,Superconductivity ,Novel technique ,Strongly Correlated Electrons (cond-mat.str-el) ,Condensed matter physics ,QC1-999 ,Condensed Matter - Superconductivity ,FOS: Physical sciences ,General Physics and Astronomy ,Non-equilibrium thermodynamics ,02 engineering and technology ,State (functional analysis) ,021001 nanoscience & nanotechnology ,01 natural sciences ,Superconductivity (cond-mat.supr-con) ,Condensed Matter - Strongly Correlated Electrons ,Condensed Matter::Superconductivity ,0103 physical sciences ,Higgs boson ,010306 general physics ,0210 nano-technology - Abstract
We propose a novel nonequilibrium phenomenon, through which a prompt quench from a metal to a transient superconducting state can induce large oscillations of the order parameter amplitude. We argue that this oscillating mode acts as a source of parametric amplification of the incident radiation. We report experimental results on optically driven K3C60 that are consistent with these predictions. The effect is found to disappear when the onset of the excitation becomes slower than the Higgs-mode period, consistent with the theory proposed here. These results open new possibilities for the use of collective modes in many-body systems to induce nonlinear optical effects., Physical Review X, 11 (1), ISSN:2160-3308
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- 2019
5. Floquet group theory and its application to selection rules in harmonic generation
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Oren Cohen, Daniel K. Podolsky, and Ofer Neufeld
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0301 basic medicine ,Floquet theory ,Conservation law ,Multidisciplinary ,Science ,Physical system ,General Physics and Astronomy ,Harmonic (mathematics) ,02 engineering and technology ,General Chemistry ,021001 nanoscience & nanotechnology ,Article ,General Biochemistry, Genetics and Molecular Biology ,Symmetry (physics) ,03 medical and health sciences ,Harmonic spectrum ,030104 developmental biology ,Harmonics ,lcsh:Q ,Statistical physics ,lcsh:Science ,0210 nano-technology ,Group theory - Abstract
Symmetry is one of the most generic and useful concepts in science, often leading to conservation laws and selection rules. Here we formulate a general group theory for dynamical symmetries (DSs) in time-periodic Floquet systems, and derive their correspondence to observable selection rules. We apply the theory to harmonic generation, deriving closed-form tables linking DSs of the driving laser and medium (gas, liquid, or solid) in (2+1)D and (3+1)D geometries to the allowed and forbidden harmonic orders and their polarizations. We identify symmetries, including time-reversal-based, reflection-based, and elliptical-based DSs, which lead to selection rules that are not explained by currently known conservation laws. We expect the theory to be useful for ultrafast high harmonic symmetry-breaking spectroscopy, as well as in various other systems such as Floquet topological insulators., It is commonly assumed that a complete theory for selection rules in optical nonlinear harmonic generation was developed previously. Here, the authors present more general group theory based formalism for harmonic generation from dilute and dense media, yielding new symmetries and selection rules.
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- 2019
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6. Thermalization in open quantum systems
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Anat Klempner, Israel Reichental, Yariv Kafri, and Daniel K. Podolsky
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Physics ,Condensed Matter - Mesoscale and Nanoscale Physics ,Statistical Mechanics (cond-mat.stat-mech) ,Integrable system ,FOS: Physical sciences ,02 engineering and technology ,Gibbs state ,021001 nanoscience & nanotechnology ,01 natural sciences ,Open quantum system ,Formalism (philosophy of mathematics) ,Thermalisation ,Classical mechanics ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,0103 physical sciences ,010306 general physics ,0210 nano-technology ,Quantum ,Condensed Matter - Statistical Mechanics - Abstract
We study thermalization in open quantum systems using the Lindblad formalism. A method that both thermalizes and couples to Lindblad operators only at edges of the system is introduced. Our method leads to a Gibbs state of the system, satisfies fluctuation-dissipation relations, and applies both to integrable and non-integrable systems. Possible applications of the method include the study of systems coupled locally to multiple reservoirs. Our analysis also highlights the limits of applicability of the Lindblad approach to study strongly driven systems., Comment: 11 pages, 10 figures
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- 2018
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7. Kurt J. Isselbacher, MD (1925–2019)
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Lawrence S. Friedman and Daniel K. Podolsky
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Hepatology ,Gastroenterology - Published
- 2019
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8. Gastroenterology's Editors-in-Chief: Historical and Personal Perspectives of Their Editorships
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Nicholas F. LaRusso, Daniel K. Podolsky, Mark Feldman, Anil K. Rustgi, Andrew H. Soll, Jerry S. Trier, John S. Fordtran, Robert K. Ockner, M. Bishr Omary, David A. Brenner, and Raj K. Goyal
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Grossman ,Psychoanalysis ,Hepatology ,Personal perspectives ,business.industry ,Gastroenterology ,Medicine ,History, 20th Century ,Periodicals as Topic ,business ,History, 21st Century - Abstract
Fourteen editors-in-chiefs have steered G astroenterology to success since its inception in 1943. Five (Alvarez, Ivy, Aaron, Grossman, and Donaldson) are no longer with us. Their personalities and editorships, along with those of Marvin Sleisenger, are presented by their admirers. Fordtran, Ockner, Goyal, LaRusso, Podolsky, Brenner, Rustgi, and Omary describe their own backgrounds, experiences, and personal reflections on serving as editor-in-chief of G astroenterology.
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- 2013
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9. Increased T-Helper 2 Cytokines in Bile From Patients With IgG4-Related Cholangitis Disrupt the Tight Junction–Associated Biliary Epithelial Cell Barrier
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TO Lankisch, Almudena Hurtado Picó, Claudia Beutler, Andreas Fischer, Tobias Müller, Torsten Voigtländer, Thomas Berg, Oren Shibolet, Hussain Al–Abadi, Morgane Otten, Wilfried Veltzke Schlieker, Martin Volkmann, Daniel K. Podolsky, Eckart Schott, Angelika Dürr, Andreas Adler, Daniel C. Baumgart, Douglas M. Jefferson, Olaf Guckelberger, Korinna Jöhrens, Mario Anders, Dirk Meyer zum Büschenfelde, Andreas Sturm, and Bertram Wiedenmann
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Adult ,Male ,Pathology ,medicine.medical_specialty ,Cell Membrane Permeability ,Cholangitis ,Blotting, Western ,Enzyme-Linked Immunosorbent Assay ,Inflammation ,Biology ,Cholangiocyte ,Tight Junctions ,Primary sclerosing cholangitis ,Biliary disease ,Pathogenesis ,Th2 Cells ,parasitic diseases ,medicine ,Bile ,Humans ,Cells, Cultured ,Barrier function ,Aged ,Aged, 80 and over ,Immunity, Cellular ,Hepatology ,Tight junction ,Gastroenterology ,Interleukin ,Epithelial Cells ,Middle Aged ,medicine.disease ,Antibodies, Anti-Idiotypic ,Immunoglobulin G ,Immunology ,Cytokines ,Female ,medicine.symptom - Abstract
Background & Aims IgG4-related cholangitis is a chronic inflammatory biliary disease that involves different parts of the pancreatobiliary system, but little is known about its mechanisms of pathogenesis. A T-helper (Th) 2 cell cytokine profile predominates in liver tissues from these patients. We investigated whether Th2 cytokines disrupt the barrier function of biliary epithelial cells (BECs) in patients with IgG4-related cholangitis. Methods We assessed the Th2 cytokine profile in bile samples and brush cytology samples from 16 patients with IgG4-related cholangitis and respective controls, and evaluated transcription of tight junction (TJ)–associated proteins in primary BECs from these patients. The effect of Th2 cytokines on TJ-mediated BEC barrier function and wound closure was examined by immunoblot, transepithelial resistance, charge-selective Na + /Cl − permeability, and 4-kDa dextran flux analyses. Results Bile samples from patients with IgG4-related cholangitis had significant increases in levels of Th2 cytokines, interleukin (IL)-4, and IL-5. IL-13 was not detected in bile samples, but polymerase chain reaction analysis of whole-brush cytology samples from patients with IgG4-related cholangitis revealed increased levels of IL-13 mRNA, compared with controls. BECs isolated from the brush cytology samples revealed decreased levels of claudin-1 and increased levels of claudin-2 mRNAs. In vitro, IL-4 and IL-13 significantly reduced TJ-associated BEC barrier function by activating claudin-2–mediated paracellular pore pathways. Th2 cytokines also impaired wound closure in BEC monolayers. Conclusions Th2 cytokines predominate in bile samples from patients with IgG4-related cholangitis and disrupt the TJ-mediated BEC barrier in vitro. Subsequent increases in biliary leaks might contribute to the pathogenesis of chronic biliary inflammation in these patients.
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- 2013
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10. Photonic Floquet topological insulators
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Daniel K. Podolsky, Mordechai Segev, Mikael C. Rechtsman, Stefan Nolte, Felix Dreisow, Yonatan Plotnik, Alexander Szameit, Yaakov Lumer, and Julia M. Zeuner
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Floquet theory ,Topological degeneracy ,FOS: Physical sciences ,02 engineering and technology ,Quantum Hall effect ,Symmetry protected topological order ,01 natural sciences ,Electromagnetic radiation ,010305 fluids & plasmas ,Quantum mechanics ,Mesoscale and Nanoscale Physics (cond-mat.mes-hall) ,0103 physical sciences ,Topological order ,010306 general physics ,Topological quantum number ,Photonic crystal ,Quantum computer ,Physics ,Condensed Matter - Materials Science ,Multidisciplinary ,Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed matter physics ,Spintronics ,business.industry ,Materials Science (cond-mat.mtrl-sci) ,021001 nanoscience & nanotechnology ,Condensed Matter - Other Condensed Matter ,Topological insulator ,Photonics ,0210 nano-technology ,business ,Physics - Optics ,Optics (physics.optics) ,Other Condensed Matter (cond-mat.other) - Abstract
The topological insulator is a fundamentally new phase of matter, with the striking property that the conduction of electrons occurs only on its surface, not within the bulk, and that conduction is topologically protected. Topological protection, the total lack of scattering of electron waves by disorder, is perhaps the most fascinating and technologically important aspect of this material: it provides robustness that is otherwise known only for superconductors. However, unlike superconductivity and the quantum Hall effect, which necessitate low temperatures or magnetic fields, the immunity to disorder of topological insulators occurs at room temperature and without any external magnetic field. For this reason, topological protection is predicted to have wide-ranging applications in fault-tolerant quantum computing and spintronics. Recently, a large theoretical effort has been directed towards bringing the concept into the domain of photonics: achieving topological protection of light at optical frequencies. Besides the interesting new physics involved, photonic topological insulators hold the promise for applications in optical isolation and robust photon transport. Here, we theoretically propose and experimentally demonstrate the first photonic topological insulator: a photonic lattice exhibiting topologically protected transport on the lattice edges, without the need for any external field. The system is composed of an array of helical waveguides, evanescently coupled to one another, and arranged in a graphene-like honeycomb lattice. The chirality of the waveguides results in scatter-free, one-way edge states that are topologically protected from scattering., Comment: 21 pages, 5 figures
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- 2013
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11. Dynamical response near quantum critical points
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Daniel K. Podolsky, William Witczak-Krempa, Snir Gazit, and Andrew Lucas
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Physics ,High Energy Physics - Theory ,Strongly Correlated Electrons (cond-mat.str-el) ,Statistical Mechanics (cond-mat.stat-mech) ,010308 nuclear & particles physics ,Critical phenomena ,FOS: Physical sciences ,General Physics and Astronomy ,Lorentz covariance ,01 natural sciences ,Optical conductivity ,Condensed Matter - Strongly Correlated Electrons ,High Energy Physics - Theory (hep-th) ,Quantum Gases (cond-mat.quant-gas) ,Quantum mechanics ,0103 physical sciences ,Goldstone boson ,Sum rule in quantum mechanics ,Quantum field theory ,010306 general physics ,Condensed Matter - Quantum Gases ,Quantum ,Lattice model (physics) ,Condensed Matter - Statistical Mechanics - Abstract
We study high frequency response functions, notably the optical conductivity, in the vicinity of quantum critical points (QCPs) by allowing for both detuning from the critical coupling and finite temperature. We consider general dimensions and dynamical exponents. This leads to a unified understanding of sum rules. In systems with emergent Lorentz invariance, powerful methods from conformal field theory allow us to fix the high frequency response in terms of universal coefficients. We test our predictions analytically in the large-N O(N) model and using the gauge-gravity duality, and numerically via Quantum Monte Carlo simulations on a lattice model hosting the interacting superfluid-insulator QCP. In superfluid phases, interacting Goldstone bosons qualitatively change the high frequency optical conductivity, and the corresponding sum rule., 4+12 pages. 2+2 figures. v2: Added explanations throughout, and new results in Appendix C for the ordered phase. Published version
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- 2016
12. Toll-like Receptor 4 Variant D299G Induces Features of Neoplastic Progression in Caco-2 Intestinal Cells and Is Associated With Advanced Human Colon Cancer
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Annette Eyking, Henning Reis, Kurt Werner Schmid, Elke Cario, Guido Gerken, M. Rünzi, Daniel K. Podolsky, Birgit Ey, and Andres I. Roig
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Adult ,Male ,STAT3 Transcription Factor ,Epithelial-Mesenchymal Transition ,Colorectal cancer ,Immunoblotting ,Medizin ,CD1 ,Enzyme-Linked Immunosorbent Assay ,Adenocarcinoma ,Biology ,medicine.disease_cause ,Article ,Metastasis ,Mice ,Intestinal mucosa ,medicine ,Animals ,Humans ,RNA, Messenger ,Epithelial–mesenchymal transition ,Intestinal Mucosa ,Wnt Signaling Pathway ,Aged ,Oligonucleotide Array Sequence Analysis ,Aged, 80 and over ,Inflammation ,Hepatology ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,Gastroenterology ,Middle Aged ,medicine.disease ,Gene Expression Regulation, Neoplastic ,Toll-Like Receptor 4 ,Microscopy, Fluorescence ,Tumor progression ,Colonic Neoplasms ,Disease Progression ,Cancer research ,Female ,lipids (amino acids, peptides, and proteins) ,Caco-2 Cells ,Carcinogenesis - Abstract
Background & Aims The Toll-like receptor (TLR) 4 mediates homeostasis of the intestinal epithelial cell (IEC) barrier. We investigated the effects of TLR4-D299G on IEC functions. Methods We engineered IECs (Caco-2) to stably overexpress hemagglutinin-tagged wild-type TLR4, TLR4-D299G, or TLR4-T399I. We performed gene expression profiling using DNA microarray analysis. Findings were confirmed by real-time, quantitative, reverse-transcriptase polymerase chain reaction, immunoblot, enzyme-linked immunosorbent assay, confocal immunofluorescence, and functional analyses. Tumorigenicity was tested using the CD1 nu/nu mice xenograft model. Human colon cancer specimens (N = 214) were genotyped and assessed for disease stage. Results Caco-2 cells that expressed TLR4-D299G underwent the epithelial-mesenchymal transition and morphologic changes associated with tumor progression, whereas cells that expressed wild-type TLR4 or TLR4-T399I did not. Caco-2 cells that expressed TLR4-D299G had significant increases in expression levels of genes and proteins associated with inflammation and/or tumorigenesis compared with cells that expressed other forms of TLR4. The invasive activity of TLR4-D299G Caco-2 cells required Wnt-dependent activation of STAT3. In mice, intestinal xenograft tumors grew from Caco-2 cells that expressed TLR4-D299G, but not cells that expressed other forms of TLR4; tumor growth was blocked by a specific inhibitor of STAT3. Human colon adenocarcinomas from patients with TLR4-D299G were more frequently of an advanced stage (International Union Against Cancer [UICC] ≥III, 70% vs 46%; P = .0142) with metastasis (UICC IV, 42% vs 19%; P = .0065) than those with wild-type TLR4. Expression of STAT3 messenger RNA was higher among colonic adenocarcinomas with TLR4-D299G than those with wild-type TLR4. Conclusions TLR4-D299G induces features of neoplastic progression in intestinal epithelial Caco-2 cells and associates with aggressive colon cancer in humans, implying a novel link between aberrant innate immunity and colonic cancerogenesis.
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- 2011
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13. LRRK2 Is Involved in the IFN-γ Response and Host Response to Pathogens
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Isabel Ballester, Ramnik J. Xavier, Joshua R. Korzenik, John D. Rioux, Christine Stevens, Chun Li, Daniel K. Podolsky, Yair Benita, Mark J. Daly, Bruce E. Sands, and Agnes Gardet
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Blotting, Western ,Immunology ,Fluorescent Antibody Technique ,Gene Expression ,Inflammation ,Cell Separation ,Protein Serine-Threonine Kinases ,Biology ,Leucine-Rich Repeat Serine-Threonine Protein Kinase-2 ,Article ,Pathogenesis ,Interferon-gamma ,Mice ,Immune system ,Crohn Disease ,Intestinal mucosa ,medicine ,Animals ,Humans ,Immunology and Allergy ,Intestinal Mucosa ,Oligonucleotide Array Sequence Analysis ,B-Lymphocytes ,Gene knockdown ,Microscopy, Confocal ,Mucous Membrane ,Reverse Transcriptase Polymerase Chain Reaction ,Gene Expression Profiling ,NF-kappa B ,Flow Cytometry ,LRRK2 ,Immunity, Innate ,nervous system diseases ,Gene expression profiling ,Signal transduction ,medicine.symptom ,Signal Transduction - Abstract
LRRK2 was previously identified as a defective gene in Parkinson’s disease, and it is also located in a risk region for Crohn’s disease. In this study, we aim to determine whether LRRK2 could be involved in immune responses. We show that LRRK2 expression is enriched in human immune cells. LRRK2 is an IFN-γ target gene, and its expression increased in intestinal tissues upon Crohn’s disease inflammation. In inflamed intestinal tissues, LRRK2 is detected in the lamina propria macrophages, B-lymphocytes, and CD103-positive dendritic cells. Furthermore, LRRK2 expression enhances NF-κB–dependent transcription, suggesting its role in immune response signaling. Endogenous LRRK2 rapidly translocates near bacterial membranes, and knockdown of LRRK2 interferes with reactive oxygen species production during phagocytosis and bacterial killing. These observations indicate that LRRK2 is an IFN-γ target gene, and it might be involved in signaling pathways relevant to Crohn’s disease pathogenesis.
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- 2010
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14. In vivo action of trefoil factor 2 (TFF2) to speed gastric repair is independent of cyclooxygenase
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Daniel K. Podolsky, Marshall H. Montrose, Eitaro Aihara, Timothy C. Wang, and Lin Xue
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Indomethacin ,Muscle Proteins ,Article ,Dinoprostone ,Mice ,In vivo ,medicine ,Extracellular ,Gastric mucosa ,Animals ,Cyclooxygenase Inhibitors ,education ,Mice, Knockout ,Wound Healing ,education.field_of_study ,biology ,Chemistry ,Stomach ,Mucin ,Mucins ,Gastroenterology ,Trefoil factor 2 ,Hydrogen-Ion Concentration ,Epithelium ,Cell biology ,Mice, Inbred C57BL ,Disease Models, Animal ,medicine.anatomical_structure ,Biochemistry ,Gastric Mucosa ,Prostaglandin-Endoperoxide Synthases ,biology.protein ,Trefoil Factor-2 ,Cyclooxygenase ,Peptides - Abstract
Objective Trefoil factor (TFF) peptides are expressed in gastric tissues, where they are part of the epithelial defences. To complement previous in vitro work, the goal of the present study was to examine directly if TFF2 was essential for gastric restitution in vivo during the recovery from microscopic damage. Design TFF2 mutant (KO) mice were examined to study the epithelial repair process in vivo after laser-induced photodamage (LPD). Using two-photon laser energy absorption (710 nm), LPD was imposed on an ∼3–5 cell region of surface epithelium in anaesthetised mouse stomach. Responses to damage were evaluated during confocal time-lapse microscopy; including area of damage and the extracellular pH adjacent to the damaged surface (Cl-NERF pH sensor). Results In control (TFF2+/+ and TFF2+/–) mice, damaged cells were exfoliated and the damaged epithelium was repaired by indomethacin. The resting surface pH was similar between control and TFF2-KO animals, but the post-LPD alkalisation of surface pH observed in control mice (∆pH 0.3±0.05, n=21) was attenuated in the TFF2-KO stomach (∆pH −0.08±0.09, n=18). Recobinant rat TFF3 partially rescued the attenuated surface pH change in TFF2-KO stomach, in the presence or absence of indomethacin. Conclusions In the gastric epithelium in vivo, TFFs promote epithelial restitution via a mechanism that does not require cyclooxygenase activation. A novel role for TFFs to affect gastric surface pH is observed.
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- 2010
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15. Identification of Drosophila Yin and PEPT2 as Evolutionarily Conserved Phagosome-associated Muramyl Dipeptide Transporters
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Stephanie Dejardin, Koichi Kobayashi, Lynda M. Stuart, Neal S. Silverman, Bobby J. Cherayil, Guillaume M. Charrière, W. K. Eddie Ip, Adam Lacy-Hulbert, Laurent Boyer, Michael P. Cappillino, Daniel K. Podolsky, and Anna Sokolovska
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Staphylococcus aureus ,media_common.quotation_subject ,Green Fluorescent Proteins ,Immunology ,Antigen presentation ,Nod2 Signaling Adaptor Protein ,Biology ,Transfection ,Biochemistry ,Cell Line ,Evolution, Molecular ,Mice ,chemistry.chemical_compound ,Phagosomes ,NOD2 ,Animals ,Drosophila Proteins ,Humans ,Internalization ,Molecular Biology ,media_common ,Phagosome ,Mice, Knockout ,Microscopy, Confocal ,Symporters ,Interleukin-6 ,Reverse Transcriptase Polymerase Chain Reaction ,Tumor Necrosis Factor-alpha ,Macrophages ,Autophagy ,NF-kappa B ,Pattern recognition receptor ,Membrane Transport Proteins ,Cell Biology ,Toll-Like Receptor 2 ,digestive system diseases ,Cell biology ,Mice, Inbred C57BL ,Toll-Like Receptor 6 ,chemistry ,Host-Pathogen Interactions ,Acetylmuramyl-Alanyl-Isoglutamine ,Drosophila Protein ,Muramyl dipeptide - Abstract
NOD2 (nucleotide-binding oligomerization domain containing 2) is an important cytosolic pattern recognition receptor that activates NF-kappaB and other immune effector pathways such as autophagy and antigen presentation. Despite its intracellular localization, NOD2 participates in sensing of extracellular microbes such as Staphylococcus aureus. NOD2 ligands similar to the minimal synthetic ligand muramyl dipeptide (MDP) are generated by internalization and processing of bacteria in hydrolytic phagolysosomes. However, how these derived ligands exit this organelle and access the cytosol to activate NOD2 is poorly understood. Here, we address how phagosome-derived NOD2 ligands access the cytosol in human phagocytes. Drawing on data from Drosophila phagosomes, we identify an evolutionarily conserved role of SLC15A transporters, Drosophila Yin and PEPT2, as MDP transporters in fly and human phagocytes, respectively. We show that PEPT2 is highly expressed by human myeloid cells. Ectopic expression of both Yin and PEPT2 increases the sensitivity of NOD2-dependent NF-kappaB activation. Additionally, we show that PEPT2 associates with phagosome membranes. Together, these data identify Drosophila Yin and PEPT2 as evolutionarily conserved phagosome-associated transporters that are likely to be of particular importance in delivery of bacteria-derived ligands generated in phagosomes to cytosolic sensors recruited to the vicinity of these organelles.
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- 2010
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16. TLR2 Mediates Gap Junctional Intercellular Communication through Connexin-43 in Intestinal Epithelial Barrier Injury
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Annette Eyking, Daniel K. Podolsky, Birgit Ey, Elke Cario, and Guido Gerken
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Agonist ,medicine.drug_class ,Connexin ,Mice, Transgenic ,Biology ,Biochemistry ,Mice ,Molecular Basis of Cell and Developmental Biology ,medicine ,Animals ,Humans ,Phosphorylation ,Receptor ,Molecular Biology ,Tissue homeostasis ,Inflammation ,Wound Healing ,Innate immune system ,Gap Junctions ,Epithelial Cells ,Cell Biology ,Toll-Like Receptor 2 ,Epithelium ,Cell biology ,Mice, Inbred C57BL ,TLR2 ,medicine.anatomical_structure ,Gene Expression Regulation ,Connexin 43 ,Immune System ,cardiovascular system ,sense organs ,Caco-2 Cells ,biological phenomena, cell phenomena, and immunity ,Ex vivo - Abstract
Gap junctional intercellular communication (GJIC) coordinates cellular functions essential for sustaining tissue homeostasis; yet its regulation in the intestine is not well understood. Here, we identify a novel physiological link between Toll-like receptor (TLR) 2 and GJIC through modulation of Connexin-43 (Cx43) during acute and chronic inflammatory injury of the intestinal epithelial cell (IEC) barrier. Data from in vitro studies reveal that TLR2 activation modulates Cx43 synthesis and increases GJIC via Cx43 during IEC injury. The ulcerative colitis-associated TLR2-R753Q mutant targets Cx43 for increased proteasomal degradation, impairing TLR2-mediated GJIC during intestinal epithelial wounding. In vivo studies using mucosal RNA interference show that TLR2-mediated mucosal healing depends functionally on intestinal epithelial Cx43 during acute inflammatory stress-induced damage. Mice deficient in TLR2 exhibit IEC-specific alterations in Cx43, whereas administration of a TLR2 agonist protects GJIC by blocking accumulation of Cx43 and its hyperphosphorylation at Ser368 to prevent spontaneous chronic colitis in MDR1alpha-deficient mice. Finally, adding the TLR2 agonist to three-dimensional intestinal mucosa-like cultures of human biopsies preserves intestinal epithelial Cx43 integrity and polarization ex vivo. In conclusion, Cx43 plays an important role in innate immune control of commensal-mediated intestinal epithelial wound repair.
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- 2009
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17. Colitis-Associated Variant of TLR2 Causes Impaired Mucosal Repair Because of TFF3 Deficiency
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Guido Gerken, Elke Cario, Daniel K. Podolsky, and Annette Eyking
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Time Factors ,Apoptosis ,Biology ,Ligands ,Transfection ,Article ,Mice ,Organ Culture Techniques ,Intestinal mucosa ,In vivo ,medicine ,Animals ,Humans ,Intestinal Mucosa ,Colitis ,Receptor ,Mice, Knockout ,Wound Healing ,Innate immune system ,Hepatology ,Dextran Sulfate ,Mucins ,Gastroenterology ,medicine.disease ,Molecular biology ,Immunity, Innate ,Recombinant Proteins ,Toll-Like Receptor 2 ,In vitro ,Mice, Inbred C57BL ,Disease Models, Animal ,TLR2 ,Mutation ,Immunology ,Goblet Cells ,Caco-2 Cells ,Trefoil Factor-3 ,Ex vivo - Abstract
Background & Aims Goblet cells (GC) facilitate mucosal protection and epithelial barrier repair, yet the innate immune mechanisms that selectively drive GC functions have not been defined. The aim of this study was to determine whether Toll-like receptor (TLR) 2 and modulation of GC-derived trefoil factor (TFF) 3 are functionally linked in the intestine. Methods GC modulation was assessed using quantitative real-time polymerase chain reaction analysis (qRT-PCR), Western blotting, and confocal microscopy. Dextran sulfate sodium (DSS) colitis was induced in wild-type, TFF3 −/− , and TLR2 −/− mice. Recombinant TLR2 ligand or TFF3 peptide were orally administered after DSS termination. Caco-2 cells overexpressing full-length TLR2 or mutant TLR2-R753Q were tested for TFF3 synthesis and functional-related effects in a wounding assay. Results Data from in vitro (Ls174T) and ex vivo models of murine and human GC reveal that TLR2 activation selectively induces synthesis of TFF3. In vivo studies using TFF3 −/− or TLR2 −/− mice demonstrate the ability for oral treatment with a TLR2 agonist to confer antiapoptotic protection of the intestinal mucosa against inflammatory stress-induced damage through TFF3. Recombinant TFF3 rescues TLR2-deficient mice from increased morbidity and mortality during acute colonic injury. Severe ulcerative colitis (UC) has recently been found to be associated with the R753Q polymorphism of the TLR2 gene. The relevance of the observed functional effect of TLR2 in regulating GC is confirmed by the finding that the UC-associated TLR2-R753Q variant is functionally deficient in the ability to induce TFF3 synthesis, thus leading to impaired wound healing. Conclusions These data demonstrate a novel function of TLR2 in intestinal GC that links products of commensal bacteria to innate immune protection of the host via TFF3.
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- 2009
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18. A Novel Hybrid Yeast-Human Network Analysis Reveals an Essential Role for FNBP1L in Antibacterial Autophagy
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Alan Huett, Masaaki Komatsu, Petric Kuballa, Aylwin Ng, Daniel K. Podolsky, Ramnik J. Xavier, Mark J. Daly, and Zhifang Cao
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Programmed cell death ,Immunology ,Autophagy ,Immunology and Allergy ,Autophagin ,Autophagy-related protein 13 ,Biology ,BAG3 ,ATG16L1 ,Interactome ,Intracellular ,Cell biology - Abstract
Autophagy is a conserved cellular process required for the removal of defective organelles, protein aggregates, and intracellular pathogens. We used a network analysis strategy to identify novel human autophagy components based upon the yeast interactome centered on the core yeast autophagy proteins. This revealed the potential involvement of 14 novel mammalian genes in autophagy, several of which have known or predicted roles in membrane organization or dynamics. We selected one of these membrane interactors, FNBP1L (formin binding protein 1-like), an F-BAR-containing protein (also termed Toca-1), for further study based upon a predicted interaction with ATG3. We confirmed the FNBP1L/ATG3 interaction biochemically and mapped the FNBP1L domains responsible. Using a functional RNA interference approach, we determined that FNBP1L is essential for autophagy of the intracellular pathogen Salmonella enterica serovar Typhimurium and show that the autophagy process serves to restrict the growth of intracellular bacteria. However, FNBP1L appears dispensable for other forms of autophagy induced by serum starvation or rapamycin. We present a model where FNBP1L is essential for autophagy of intracellular pathogens and identify FNBP1L as a differentially used molecule in specific autophagic contexts. By using network biology to derive functional biological information, we demonstrate the utility of integrated genomics to novel molecule discovery in autophagy.
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- 2009
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19. TNF Receptor Type I-Dependent Activation of Innate Responses to Reduce Intestinal Damage-Associated Mortality
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Yuriko Hachiya, Emiko Mizoguchi, Daniel K. Podolsky, Atsuhiro Ogawa, Mayumi Kawada, Katsuya Nagatani, Ken Sugimoto, and Atsushi Mizoguchi
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Myeloid ,Colon ,Apoptosis ,Biology ,Severity of Illness Index ,Mice ,Intestinal mucosa ,Bone Marrow ,medicine ,Animals ,Homeostasis ,Receptors, Tumor Necrosis Factor, Type II ,Intestinal Mucosa ,Protein kinase B ,PI3K/AKT/mTOR pathway ,Bone Marrow Transplantation ,Cell Proliferation ,Homeodomain Proteins ,Mice, Knockout ,Hepatology ,Dextran Sulfate ,Gastroenterology ,Colitis ,Molecular biology ,Mice, Inbred C57BL ,Transplantation ,Disease Models, Animal ,medicine.anatomical_structure ,Receptors, Tumor Necrosis Factor, Type I ,Tumor necrosis factor alpha ,Signal transduction ,Signal Transduction - Abstract
Background & Aims: Ligation of tumor necrosis factor (TNF) receptors (TNFRs) with TNF plays a critical role in the pathogenesis of human inflammatory bowel disease (IBD). However, it remains unclear which cell types activated through TNFR-associated signaling cascades are involved in the pathogenesis of colitis. Methods: Recombination activating gene-1 (RAG) knockout (KO) (no T or B cells)-based TNFR double and triple KO mice were generated. Bone marrow (BM) chimera mice in which BM-derived myeloid cells, but not colonic epithelial cells (CECs), express TNFRs were also generated. Colitis was induced by administration of dextran sodium sulfate (DSS) in distilled water. Murine lines and chimeras were assessed for disease severity, histopathology, apoptotic cell rate, epithelial proliferation, and bacterial invasion rate. Results: Following DSS administration, mice lacking both RAG and TNFR1 exhibited a high mortality (>80%) rate with an impaired CEC regeneration compared with RAG KO and RAG × TNFR2 double KO (DKO) mice. Transplantation of RAG KO-derived BM cells restored CEC regeneration and rescued the majority of recipient RAG × TNFR1 DKO mice from DSS-induced mortality. After BM transplantation, RAG × TNFR1 DKO mice exhibited an increased rate of apoptosis in the colonic lamina propria macrophages in association with the activation of caspases. In addition, BM reconstitution directly or indirectly enhanced the proliferation of CECs by activating mitogen-activated protein kinase and phosphoinositide-3 kinase/Akt pathways. Conclusions: TNFR1-signaling cascade in colonic myeloid lineage cells contributes to the suppression of acute damage-associated mortality presumably by controlling CEC homeostasis.
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- 2008
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20. Role of Pattern Recognition Receptors in Modulating Intestinal Immune Responses and Potential Therapeutic Implications for Inflammatory Bowel Diseases
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Daniel K. Podolsky and Cario Elke
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Pathogenesis ,Cell type ,Innate immune system ,Immune system ,Immunology ,Medizin ,Pattern recognition receptor ,TLR4 ,Disease ,Biology ,Receptor - Abstract
The intestinal mucosal barrier must exert a highly defined process of discrimination, excluding potential pathogens while allowing host-beneficial substances (e.g., nutrients) to permeate. Imbalance within this complex network of cell and microbial interactions appears to play a key role in the pathogenesis of inflammatory bowel diseases (IBD) and other gastrointestinal disorders. Toll-like receptors (TLRs) comprise a class of transmembrane pattern recognition receptors (PRRs) which play a key role in microbial recognition, the induction of antimicrobial responses, and the control of adaptive immune responses. TLRs and CARD4 and CARD15 are widely expressed by various cell types of the gastrointestinal mucosa. Recent studies have greatly advanced the understanding of the mechanisms through which the gastrointestinal innate immune system mediates the recognition and sorting of the broad luminal spectrum of microbial products. These studies have also suggested that alteration in mammalian TLR and CARD expression and function plays key roles in the pathophysiology of IBD, opening a multitude of anti-inflammatory therapeutic opportunities which are discussed in this chapter. The authors recently found that trypsin, which is abundantly secreted in intestinal inflammation, leads to the proteolysis of MD-2, an essential coreceptor of TLR4 required for optimal LPS recognition and signaling. It is likely that TLR pathways need to be differentially exploited by fine-tuned combinations of distinct TLRx agonists in conjunction with specific TLRy antagonists at different stages of disease in order to induce salutary immune responses in acute versus chronic IBD.
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- 2007
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21. Unravelling the pathogenesis of inflammatory bowel disease
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Ramnik J. Xavier and Daniel K. Podolsky
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Cell signaling ,Multidisciplinary ,Biology ,Colitis ,Inflammatory Bowel Diseases ,medicine.disease ,Acquired immune system ,Inflammatory bowel disease ,Ulcerative colitis ,Immunity, Innate ,digestive system diseases ,Pathogenesis ,Transcriptome ,Immunity ,Immunopathology ,Immunology ,Autophagy ,medicine ,Animals ,Humans ,Genetic Predisposition to Disease ,Intestinal Mucosa - Abstract
Recently, substantial advances in the understanding of the molecular pathogenesis of inflammatory bowel disease (IBD) have been made owing to three related lines of investigation. First, IBD has been found to be the most tractable of complex disorders for discovering susceptibility genes, and these have shown the importance of epithelial barrier function, and innate and adaptive immunity in disease pathogenesis. Second, efforts directed towards the identification of environmental factors implicate commensal bacteria (or their products), rather than conventional pathogens, as drivers of dysregulated immunity and IBD. Third, murine models, which exhibit many of the features of ulcerative colitis and seem to be bacteria-driven, have helped unravel the pathogenesis/mucosal immunopathology of IBD.
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- 2007
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22. TLRs in the Gut.IV. Negative regulation of Toll-like receptors and intestinal homeostasis: addition by subtraction
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Oren Shibolet and Daniel K. Podolsky
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Chemokine ,Physiology ,Population ,Nod2 Signaling Adaptor Protein ,Ligands ,Intestinal mucosa ,Physiology (medical) ,Animals ,Homeostasis ,Humans ,Intestinal Mucosa ,education ,education.field_of_study ,Innate immune system ,Hepatology ,biology ,TOLLIP ,Toll-Like Receptors ,Intracellular Signaling Peptides and Proteins ,Gastroenterology ,Receptors, Interleukin-1 ,Epithelial Cells ,Acquired immune system ,Intestinal epithelium ,Immunity, Innate ,PPAR gamma ,Interleukin-1 Receptor-Associated Kinases ,Immunology ,biology.protein ,Signal transduction ,Signal Transduction - Abstract
Toll-like receptors (TLRs) are a family of transmembrane proteins that recognize conserved molecular motifs on microorganisms. Ligand binding to TLRs initiates signaling cascades that activate NF-κB, MAPK, and interferon response factors. These culminate in cellular responses including activation of antimicrobial killing mechanisms, production of cytokines and chemokines, maturation of antigen presenting cells, and the recruitment of the adaptive immune response. Intestinal epithelial cells represent a unique population of cells that exist in direct contact with a biomass of bacteria. Initiation of TLR signaling is tightly regulated because prolonged and excessive activation of TLRs can lead to uncontrolled inflammation detrimental to the host. Varied mechanisms appear to contribute to control of TLR activation in the intestinal epithelium. These include the collective effects of several negative regulators that include IRAK-M, TOLLIP, SIGIRR, A20, Nod2, and PPARγ. However, it remains to be determined whether they comprise the entire spectrum of negative control mechanisms and how they are bypassed to trigger activation during challenge by pathogens.
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- 2007
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23. The role of the Toll receptor pathway in susceptibility to inflammatory bowel diseases
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Diane Langelier, Themistocles Dassopoulos, An Goris, Alicja Waliszewska, Richard H. Duerr, Atika Cohen, Bernard Dubois, Huiying Yang, Mark J. Daly, Niraj Jani, Alain Bitton, Denis Franchimont, J. I. Rotter, P. L. De Jager, David A. Hafler, S Brant, Cécile Libioulle, Mark S. Silverberg, Severine Vermeire, Edouard Louis, A H Steinhart, Daniel K. Podolsky, Judy H. Cho, Gillian Bromfield, John D. Rioux, Jacques Belaiche, and L. Farwell
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Male ,TIRAP ,Genotype ,genetic association ,Immunology ,Disease ,tlr4 ,Biology ,Polymorphism, Single Nucleotide ,in-vivo ,Inflammatory bowel disease ,asp299gly polymorphism ,Gene Frequency ,inflammatory bowel disease ,intestinal inflammation ,Genetics ,medicine ,Humans ,ulcerative-colitis ,Genetic Predisposition to Disease ,Longitudinal Studies ,Allele ,Genetics (clinical) ,Genetic association ,tirap ,Toll-like receptor ,Membrane Glycoproteins ,crohns-disease ,Toll-Like Receptors ,nfkb1 promoter polymorphism ,ex-vivo response ,autoimmune-disease ,Receptors, Interleukin-1 ,Odds ratio ,Inflammatory Bowel Diseases ,medicine.disease ,Ulcerative colitis ,digestive system diseases ,Toll-Like Receptor 4 ,Haplotypes ,nfkb1 ,toll-like receptor ,Female ,haplotype structure ,Signal Transduction - Abstract
The intestinal flora has long been thought to play a role either in initiating or in exacerbating the inflammatory bowel diseases (IBD). Host defenses, such as those mediated by the Toll-like receptors (TLR), are critical to the host/pathogen interaction and have been implicated in IBD pathophysiology. To explore the association of genetic variation in TLR pathways with susceptibility to IBD, we performed a replication study and pooled analyses of the putative IBD risk alleles in NFKB1 and TLR4, and we performed a haplotype-based screen for association to IBD in the TLR genes and a selection of their adaptor and signaling molecules. Our genotyping of 1539 cases of IBD and pooled analysis of 4805 cases of IBD validates the published association of a TLR4 allele with risk of IBD (odds ratio (OR): 1.30, 95% confidence interval (CI): 1.15 - 1.48; P = 0.00017) and Crohn's disease (OR: 1.33, 95% CI: 1.16 - 1.54; P = 0.000035) but not ulcerative colitis. We also describe novel suggestive evidence that TIRAP (OR: 1.16, 95% CI: 1.04 - 1.30; P = 0.007) has a modest effect on risk of IBD. Our analysis, therefore, offers additional evidence that the TLR4 pathway - in this case, TLR4 and its signaling molecule TIRAP - plays a role in susceptibility to IBD. ispartof: Genes and immunity vol:8 issue:5 pages:387-397 ispartof: location:England status: published
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- 2007
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24. Toll-Like Receptor 2 Controls Mucosal Inflammation by Regulating Epithelial Barrier Function
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Guido Gerken, Elke Cario, and Daniel K. Podolsky
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Cell Survival ,Blotting, Western ,Plasma Substitutes ,Apoptosis ,Inflammation ,Biology ,Severity of Illness Index ,Epithelium ,Permeability ,Cell Line ,Lipopeptides ,Mice ,medicine ,Animals ,Intestinal Mucosa ,Receptor ,Toll-like receptor ,Microscopy, Confocal ,Innate immune system ,Hepatology ,Dextran Sulfate ,Gastroenterology ,Pattern recognition receptor ,Colitis ,Immunohistochemistry ,Intestinal epithelium ,Toll-Like Receptor 2 ,Cell biology ,Mice, Inbred C57BL ,Disease Models, Animal ,TLR2 ,Immunology ,Female ,medicine.symptom ,Peptides ,Ex vivo - Abstract
Background & Aims: Toll-like receptors (TLRs) represent a class of transmembrane pattern recognition receptors essential for microbial recognition and control of innate immune responses. Commensal bacteria play an important role in maintaining tolerance and active stability of the intestinal epithelial barrier by suppressing intestinal inflammation, yet the mechanisms of action are unknown. The aim of this study was to determine the functional relevance of TLR2 to control tight junction (TJ)-associated intestinal epithelial barrier integrity to balance mucosal homeostasis against inflammatory stress-induced damage. Methods: TLR2 ligand (synthetic Pam3Cys-SK4 [PCSK])-induced activation of signaling cascades and TJ-associated distribution was assessed by using Western blotting and confocal microscopy combined with functional transfection and inhibitor studies in model intestinal epithelial cell (IEC) lines (IEC-6, Caco-2) or primary IEC cultured short-term ex vivo. DSS colitis was induced by standard protocol in wild-type, TLR2−/−, and MyD88−/− mice. Spontaneous apoptosis was assessed by terminal deoxinucleotidyl-transferase-mediated dUTP-biotin nick end-labeling. Results: Data from in vitro and ex vivo models of intestinal epithelial cells revealed that TLR2 stimulation effectively preserves TJ-associated barrier assembly against stress-induced damage through promotion of PI3K/Akt-mediated cell survival via MyD88. Furthermore, in vivo studies underscored that TLR2-mediated TJ regulation critically determines susceptibility to intestinal injury and inflammation. Inflammatory stress in mice deficient of TLR2 or MyD88 induced early TJ-associated disruption interrelated with anti-apoptotic failure of the intestinal epithelial barrier. Oral treatment of colitis with the TLR2 ligand PCSK significantly suppressed mucosal inflammation and apoptosis by efficiently restoring TJ-associated integrity of the intestinal epithelium in vivo. Conclusion: TLR2 may provide a target to pharmacologically modulate mucosal injury and intestinal inflammation.
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- 2007
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25. Collective modes in a quantum solid
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H. Nonne, Daniel P. Arovas, Daniel K. Podolsky, Assa Auerbach, and Snir Gazit
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Physics ,Strongly Correlated Electrons (cond-mat.str-el) ,Statistical Mechanics (cond-mat.stat-mech) ,General Physics and Astronomy ,FOS: Physical sciences ,Inelastic neutron scattering ,Symmetry (physics) ,Momentum ,Condensed Matter - Other Condensed Matter ,Condensed Matter - Strongly Correlated Electrons ,Amplitude ,Helium-4 ,Quantum mechanics ,Higgs boson ,Structure factor ,Excitation ,Condensed Matter - Statistical Mechanics ,Other Condensed Matter (cond-mat.other) - Abstract
We provide a theoretical explanation for the optical modes observed in inelastic neutron scattering (INS) on the bcc solid phase of helium 4 [T. Markovich, E. Polturak, J. Bossy, and E. Farhi, Phys. Rev. Lett. 88, 195301 (2002)]. We argue that these excitations are amplitude (Higgs) modes associated with fluctuations of the crystal order parameter within the unit cell. We present an analysis of the modes based on an effective Ginzburg-Landau model, classify them according to their symmetry properties, and compute their signature in INS experiments. In addition, we calculate the dynamical structure factor by means of an ab intio quantum Monte Carlo simulation and find a finite frequency excitation at zero relative momentum., 13 pages, 11 figures
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- 2015
26. Spectral function of the Higgs mode in4−εdimensions
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Yaniv Tenenbaum Katan and Daniel K. Podolsky
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Physics ,Amplitude ,Quantum mechanics ,Quantum critical point ,Scalar (mathematics) ,Phase (waves) ,Higgs boson ,Order (ring theory) ,Condensed Matter Physics ,Quantum ,Resonance (particle physics) ,Electronic, Optical and Magnetic Materials - Abstract
We investigate the amplitude (Higgs) mode of the relativistic $O\left(N\right)$ model in the vicinity of the Wilson-Fisher quantum critical point in $D=4\ensuremath{-}\ensuremath{\varepsilon}$ space-time dimensions. We compute the universal part of the scalar spectral function near the transition, to leading nontrivial order in the ordered phase, and to next to leading order in both the disordered phase and the quantum critical regime. We find that, in the disordered phase, the spectral function has a threshold behavior with no Higgs-like peak, whereas in the ordered phase, the Higgs mode appears as a well defined resonance. The pole associated with this resonance is purely real in the $D\ensuremath{\rightarrow}3+1$ limit, evolving smoothly with dimensionality to become purely imaginary at $D=2+1$ in the $N\ensuremath{\rightarrow}\ensuremath{\infty}$ limit. Our results complement previous studies of the scalar spectral function, and demonstrate that the resonance found in these studies can indeed be directly identified with the Higgs mode.
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- 2015
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27. GRIM-19 Interacts with Nucleotide Oligomerization Domain 2 and Serves as Downstream Effector of Anti-bacterial Function in Intestinal Epithelial Cells
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Ramnik J. Xavier, Hans Christian Reinecker, Nicolas Barnich, Jose E. Aguirre, Daniel K. Podolsky, and Tadakazu Hisamatsu
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animal structures ,Immunoblotting ,Nod2 Signaling Adaptor Protein ,Biology ,Biochemistry ,Cell Line ,HT29 Cells ,chemistry.chemical_compound ,Cytosol ,Intestinal mucosa ,Genes, Reporter ,Salmonella ,Cell Line, Tumor ,Two-Hybrid System Techniques ,NOD2 ,Escherichia coli ,Animals ,Humans ,Immunoprecipitation ,NADH, NADPH Oxidoreductases ,Intestinal Mucosa ,RNA, Small Interfering ,Luciferases ,Molecular Biology ,Microscopy, Confocal ,COS cells ,Reverse Transcriptase Polymerase Chain Reaction ,Effector ,Intracellular Signaling Peptides and Proteins ,NF-kappa B ,Epithelial Cells ,Cell Biology ,digestive system diseases ,Protein Structure, Tertiary ,Cell biology ,Intestines ,chemistry ,COS Cells ,Caco-2 Cells ,Signal transduction ,Apoptosis Regulatory Proteins ,Intracellular ,Muramyl dipeptide ,Plasmids ,Protein Binding ,Signal Transduction - Abstract
Nucleotide oligomerization domain 2 (NOD2) functions as a mammalian cytosolic pathogen recognition molecule, and variants have been associated with risk for Crohn disease. We recently demonstrated that NOD2 functions as an anti-bacterial factor limiting survival of intracellular invasive bacteria. To gain further insight into the mechanism of NOD2 activation and signal transduction, we performed yeast two-hybrid screening. We demonstrate that GRIM-19, a protein with homology to the NADPH dehydrogenase complex, interacts with endogenous NOD2 in HT29 cells. GRIM-19 is required for NF-kappaB activation following NOD2-mediated recognition of bacterial muramyl dipeptide. GRIM-19 also controls pathogen invasion of intestinal epithelial cells. GRIM-19 expression is decreased in inflamed mucosa of patients with inflammatory bowel diseases. GRIM-19 may be a key component in NOD2-mediated innate mucosal responses and serve to regulate intestinal epithelial cell responses to microbes.
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- 2005
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28. Commensal flora: Wolf in sheep’s clothing
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Daniel K. Podolsky and Ramnik J. Xavier
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Flora ,Geography ,Hepatology ,Ecology ,business.industry ,Gastroenterology ,Clothing ,business - Published
- 2005
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29. Membrane recruitment of NOD2 in intestinal epithelial cells is essential for nuclear factor–κB activation in muramyl dipeptide recognition
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Nicolas Barnich, Daniel K. Podolsky, Ramnik J. Xavier, Jose E. Aguirre, and Hans Christian Reinecker
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Mutant ,Amino Acid Motifs ,Nod2 Signaling Adaptor Protein ,Biology ,Cell membrane ,chemistry.chemical_compound ,Intestinal mucosa ,Leucine ,NOD2 ,Report ,Chlorocebus aethiops ,medicine ,Animals ,Humans ,Amino Acid Sequence ,Intestinal Mucosa ,Immunity, Mucosal ,Research Articles ,Antigens, Bacterial ,COS cells ,Cell Membrane ,Intracellular Signaling Peptides and Proteins ,NF-kappa B ,Tryptophan ,Epithelial Cells ,Cell Biology ,NFKB1 ,Molecular biology ,digestive system diseases ,Transport protein ,Protein Structure, Tertiary ,Protein Transport ,medicine.anatomical_structure ,chemistry ,COS Cells ,Mutation ,Caco-2 Cells ,Acetylmuramyl-Alanyl-Isoglutamine ,Muramyl dipeptide - Abstract
Nucleotide oligomerization domain (NOD) 2 functions as a mammalian cytosolic pathogen recognition molecule, and mutant forms have been genetically linked to Crohn's disease (CD). NOD2 associates with the caspase activation and recruitment domain of RIP-like interacting caspase-like apoptosis regulatory protein kinase (RICK)/RIP2 and activates nuclear factor (NF)–κB in epithelial cells and macrophages, whereas NOD2 mutant 3020insC, which is associated with CD, shows an impaired ability to activate NF-κB. To gain insight into the molecular mechanisms of NOD2 function, we performed a functional analysis of deletion and substitution NOD2 mutants. NOD2, but not NOD2 3020insC mutant, associated with cell surface membranes of intestinal epithelial cells. Membrane targeting and subsequent NF-κB activation are mediated by two leucine residues and a tryptophan-containing motif in the COOH-terminal domain of NOD2. The membrane targeting of NOD2 is required for NF-κB activation after the recognition of bacterial muramyl dipeptide in intestinal epithelial cells.
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- 2005
30. An analysis of the potential impact of computed tomographic colonography (virtual colonoscopy) on colonoscopy demand
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Michael E. Zalis, G. Scott Gazelle, Chin Hur, and Daniel K. Podolsky
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Potential impact ,medicine.medical_specialty ,Hepatology ,medicine.diagnostic_test ,Virtual colonoscopy ,business.industry ,Colorectal cancer ,Cost effectiveness ,Gastroenterology ,Reproducibility of Results ,Colonoscopy ,Models, Theoretical ,medicine.disease ,Sensitivity and Specificity ,United States ,Humans ,Patient Compliance ,Medicine ,Computed Tomographic Colonography ,Conventional colonoscopy ,Radiology ,business ,Colonography, Computed Tomographic ,Positive Finding - Abstract
Background & Aims: There has been much speculation about the potential impact on the use of conventional colonoscopy if "virtual" computed tomographic colonography (CTC) became a widely accepted modality for colorectal cancer (CRC) screening. However, no formal analysis of the impact of CTC on colonoscopy demand has been reported. Methods: A mathematical model to predict colonoscopy demand based on several relevant input parameters was constructed. Current national colonoscopy practice, estimated using various published reports, was used as the foundation to project colonoscopy demand if CTC were implemented as the primary CRC screening modality. Results: In the base-case analysis, if CTC were used as the primary modality for CRC screening, 1.78 million colonoscopies could be eliminated from the total 6.47 million in 2003. Depending on the polyp size threshold used to define a CTC study as positive (6 or 10 mm), this loss would be partially offset by 1.21 million (6 mm) or .34 million (10 mm) follow-up colonoscopies for CTC examinations with positive findings, resulting in a net loss of .57 million (8.8% decrease) (6 mm) or 1.44 million (22.3% decrease) (10 mm). Extensive sensitivity analyses showed that the findings of this model were robust and insensitive to most parameters tested but were sensitive to a few parameters, including the percentage of CTC examinations with positive findings. Conclusions: Wide-scale implementation of CTC for CRC screening would likely lead to a decrease in use of conventional colonoscopy. The percentage of CTC studies with positive findings seemed to be a pivotal variable, which would be determined in large part by the polyp size ultimately established to define a positive finding.
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- 2004
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31. Functional modulation of enterocytes by gram-positive and gram-negative microorganisms
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Jan Michel Otte and Daniel K. Podolsky
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Physiology ,Enterocyte ,Blotting, Western ,Fluorescent Antibody Technique ,Enzyme-Linked Immunosorbent Assay ,Gram-Positive Bacteria ,medicine.disease_cause ,Inflammatory bowel disease ,Cell Line ,Tight Junctions ,Microbiology ,law.invention ,Probiotic ,law ,Cell Line, Tumor ,Physiology (medical) ,Gram-Negative Bacteria ,Electric Impedance ,medicine ,Humans ,Coloring Agents ,Escherichia coli ,Gram ,Hepatology ,biology ,Reverse Transcriptase Polymerase Chain Reaction ,Probiotics ,Interleukin-8 ,Mucin ,Gastroenterology ,Proteins ,Trypan Blue ,biology.organism_classification ,medicine.disease ,Enterobacteriaceae ,Culture Media ,Enterocytes ,medicine.anatomical_structure ,Protein Biosynthesis ,Immunology ,RNA ,Indicators and Reagents ,Bacteria ,Signal Transduction - Abstract
Clinical studies have suggested that so-called probiotic bacteria may be effective as therapy in inflammatory bowel disease. However, the molecular mechanisms of their interaction with the intestinal surface remain undefined. The influence of whole probiotic bacteria [ Escherichia coli Nissle 1917 (EcN); probiotic mixture VSL#3 (PM)], bacterial cell lysates, and conditioned media on transepithelial resistance (TER), IL-8 secretion, mucin gene expression, and tight junction proteins were determined in T84 and HT-29 intestinal epithelial cells (IEC). In addition, effects on pathogen ( Salmonella dublin)-induced alterations were analyzed. EcN as well as debris and cell extracts induced IL-8 secretion from IEC, whereas no such effect was observed following incubation with the PM. The PM and soluble protein(s) released from the PM increased TER, prevented pathogen-induced decrease in TER, and were shown to stabilize tight junctions. The PM induced expression of mucins in IEC, and these organisms as well as EcN diminished S. dublin-induced cell death. Inhibition of MAPKs with PD-98059 or SB-203580 significantly decreased alterations in IL-8 synthesis and mucin expression and affected the regulation of TER. Probiotics and protein(s) released by these organisms may functionally modulate the intestinal epithelium of the host by different mechanisms, including the competition of whole organisms for contact with the epithelial surface as well as stabilization of the cytoskeleton and barrier function and the induction of mucin expression. Gram-negative and gram-positive organisms differ in the mechanisms activated, and a combination of organisms might be more effective than the application of a single strain.
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- 2004
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32. Chemotherapy- and radiotherapy-induced intestinal damage is regulated by intestinal trefoil factor
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Josee Wong, Kathryn L. Devaney, Yan Li, Daniel K. Podolsky, Ramnik J. Xavier, Sunita Swaminathan, and Paul L. Beck
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Trefoil Factors ,Pathology ,medicine.medical_specialty ,Drug-Related Side Effects and Adverse Reactions ,medicine.medical_treatment ,Muscle Proteins ,Biology ,digestive system ,Mice ,Intestinal mucosa ,medicine ,Mucositis ,Animals ,Intestinal Mucosa ,education ,Trefoil ,Mice, Knockout ,education.field_of_study ,Chemotherapy ,Goblet cell ,Radiotherapy ,Hepatology ,Trefoil factor 3 ,Neuropeptides ,Mucins ,Gastroenterology ,Trefoil factor 2 ,medicine.disease ,Enteritis ,Recombinant Proteins ,Mice, Inbred C57BL ,medicine.anatomical_structure ,Cancer research ,Disease Susceptibility ,Trefoil Factor-2 ,Trefoil Factor-3 ,Peptides - Abstract
Background & Aims: Injury to the intestinal mucosa is frequently a dose-limiting complication of radiotherapy and chemotherapy. Approaches to limit the damage to the intestine during radiation and chemotherapy have been largely ineffective. Trefoil factors are produced throughout the gastrointestinal tract and regulate cell migration, restitution, and repair. Studies were undertaken to define the role of intestinal trefoil factor in modulating the intestinal response to chemotherapy and radiation. Methods: The effect of intestinal trefoil factor on migration and cell survival in intestinal epithelial monolayer exposed to methotrexate was studied in vitro. Chemotherapy and radiation damage was assessed in wild-type and intestinal trefoil factor-null mice in the presence or absence of supplemental intestinal trefoil factor administered in drinking water. Results: Radiation and chemotherapy induced a marked reduction in goblet cell number and intestinal trefoil factor messenger RNA, as well as intestinal trefoil factor promoter activity. Intestinal trefoil factor improved intestinal epithelial cell viability and wound repair after chemotherapy exposure in vitro. Intestinal trefoil factor-deficient mice (intestinal trefoil factor −/− ) were more susceptible to chemotherapy- and radiation-induced mucositis. Oral recombinant intestinal trefoil factor reduced the severity of both chemotherapy-induced and chemotherapy/radiotherapy-induced intestinal mucositis. Conclusions: These studies suggest that intestinal trefoil factor is involved in protection against and recovery from intestinal mucositis induced by radiation and chemotherapy.
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- 2004
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33. Interferon-γ Augments CARD4/NOD1 Gene and Protein Expression through Interferon Regulatory Factor-1 in Intestinal Epithelial Cells
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Manabu Suzuki, Daniel K. Podolsky, and Tadakazu Hisamatsu
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Time Factors ,Transcription, Genetic ,medicine.medical_treatment ,Amino Acid Motifs ,Biochemistry ,Interleukin 22 ,Cytosol ,Interferon ,Nod1 Signaling Adaptor Protein ,NOD1 ,Tumor Cells, Cultured ,Intestinal Mucosa ,Luciferases ,Promoter Regions, Genetic ,Expression vector ,Reverse Transcriptase Polymerase Chain Reaction ,Up-Regulation ,DNA-Binding Proteins ,Cytokine ,Plasmids ,Protein Binding ,medicine.drug ,DNA, Complementary ,Colon ,Blotting, Western ,Immunoblotting ,Molecular Sequence Data ,Peptidoglycan ,Biology ,Transfection ,Interferon-gamma ,medicine ,Humans ,Electrophoretic mobility shift assay ,RNA, Messenger ,Molecular Biology ,Adaptor Proteins, Signal Transducing ,Inflammation ,Binding Sites ,Mucous Membrane ,Innate immune system ,Bacteria ,Base Sequence ,Dose-Response Relationship, Drug ,Models, Genetic ,Epithelial Cells ,Cell Biology ,Blotting, Northern ,Phosphoproteins ,Precipitin Tests ,Molecular biology ,body regions ,IRF1 ,Carrier Proteins ,Interferon Regulatory Factor-1 - Abstract
Although intestinal epithelial cells appear to be functionally hyporesponsive to normal intestinal flora, human intestinal epithelial cells can respond to enteroinvasive bacteria and induce an inflammatory response. This initial inflammatory response leads to the recruitment of polymorphonuclear leukocytes to the affected site in vitro and in vivo. CARD4/NOD1 is a potential cytosolic receptor for peptidoglycan in mammalian cells that resembles pathogen-resistant proteins of plants. In this context, CARD4/NOD1 is a candidate for a recognition protein of intracellular bacteria or peptidoglycan in intestinal epithelial cells. In this study, we demonstrate that CARD4/NOD1 is constitutively expressed in intestinal epithelial cell lines and isolated primary intestinal epithelial cells. Interferon-gamma (IFN gamma), which is a potent pro-inflammatory cytokine in intestinal mucosal inflammation, activates CARD4/NOD1 mRNA transcription in a time- and dose-dependent manner and results in augmentation of CARD4/NOD1 protein in SW480 cells. Promoter analysis of CARD4/NOD1 indicates that interferon regulatory factor-1 (IRF-1) binding motif (-791 to -782) is essential for the effect of IFN gamma. Nuclear extracts from SW480 cells treated with IFN gamma show specific binding of oligonucleotides corresponding to this IRF-1-binding motif, which was supershifted by anti-IRF-1 antibody in electrophoretic mobility shift assay. Overexpression of IRF-1 protein activates the CARD4/NOD1 promoter but not the deletion mutant of the IRF-1-binding site in a co-transfection assay of IRF-1 expression plasmid with CARD4/NOD1 promoter. These studies suggest that the Th1 cytokine, IFN gamma, activates CARD4/NOD1 transcription and regulate innate immune mechanisms in the condition of intestinal mucosal inflammation.
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- 2003
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34. Gamma Interferon Augments the Intracellular Pathway for Lipopolysaccharide (LPS) Recognition in Human Intestinal Epithelial Cells through Coordinated Up-Regulation of LPS Uptake and Expression of the Intracellular Toll-Like Receptor 4-MD-2 Complex
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Manabu Suzuki, Daniel K. Podolsky, and Tadakazu Hisamatsu
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Lipopolysaccharides ,medicine.medical_treatment ,Immunology ,Lipopolysaccharide Receptors ,Lymphocyte Antigen 96 ,Receptors, Cell Surface ,Biology ,Microbiology ,Cell Line ,Interferon-gamma ,Intestinal mucosa ,medicine ,Humans ,Interferon gamma ,RNA, Messenger ,Intestinal Mucosa ,Host Response and Inflammation ,Toll-like receptor ,Membrane Glycoproteins ,Innate immune system ,Toll-Like Receptors ,Up-Regulation ,Cell biology ,Toll-Like Receptor 4 ,Infectious Diseases ,Cytokine ,Cell culture ,Antigens, Surface ,TLR4 ,lipids (amino acids, peptides, and proteins) ,Parasitology ,Intracellular ,medicine.drug - Abstract
Although some intestinal epithelial cell lines are known to respond to lipopolysaccharide (LPS), understanding of the relationship between LPS responsiveness and the expression of LPS receptors or factors regulating LPS responsiveness of intestinal epithelial cell lines is incomplete. In this study, we demonstrate that commonly studied human intestinal epithelial cell lines can be classified into at least three different types on the basis of LPS responsiveness, Toll-like receptor-4 (TLR4) expression, and the effects of gamma interferon (IFN-γ) on LPS responsiveness. The first phenotype, which includes the HCT-116 and Caco-2 cell lines, is characterized by relative hyporesponsiveness to LPS and diminished expression of TLR4 protein. In these cells, IFN-γ does not induce LPS responsiveness. The second phenotype, which includes cell line SW480, exhibits a highly LPS-responsive phenotype and surface expression of TLR4 protein even in unprimed conditions. These lines are functionally similar to cells of monocytic lineage. In the third phenotype, which includes the HT-29 and Colo205 cell lines, TLR4 protein is largely present in the cytoplasmic fraction and the cells are hyporesponsive to LPS in an unprimed condition. However, priming of these cells with IFN-γ can induce LPS responsiveness through augmentation of LPS uptake and expression of MD-2 mRNA and intracellular TLR4 proteins. Finally, these findings suggest that the Th1 cytokine IFN-γ modulates LPS responsiveness through several mechanisms in intestinal epithelial cells and that these cells may comprise different subpopulations with distinct roles in innate immune responses.
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- 2003
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35. CARD15/NOD2 functions as an antibacterial factor in human intestinal epithelial cells
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William J. Nadeau, Tadakazu Hisamatsu, Beth A. McCormick, Hans Christian Reinecker, Manabu Suzuki, and Daniel K. Podolsky
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Salmonella typhimurium ,Nod2 Signaling Adaptor Protein ,Gene Expression ,Biology ,Interleukin 22 ,HT29 Cells ,Enterobacteriaceae ,NOD2 ,Humans ,RNA, Messenger ,Intestinal Mucosa ,Antibacterial agent ,Hepatology ,Intracellular Signaling Peptides and Proteins ,Gastroenterology ,Epithelial Cells ,Transfection ,Inflammatory Bowel Diseases ,Molecular biology ,digestive system diseases ,Caco-2 ,Cell culture ,Salmonella Infections ,Immunology ,Tumor necrosis factor alpha ,Caco-2 Cells ,Carrier Proteins - Abstract
Background & Aims: Mutations in the CARD15/NOD2 gene, a putative intracellular pattern recognition receptor, have been linked to the risk for Crohn's disease. Because intestinal epithelial cells play a role as the barrier to luminal microorganisms, we investigated the expression and function of CARD15/NOD2 in intestinal epithelial cells. Methods: Expression of CARD15/NOD2 messenger RNA (mRNA) in intestinal epithelial cell lines and primary intestinal epithelial cells was assessed by reverse-transcription polymerase chain reaction (RT-PCR). Regulation of expression of CARD15/NOD2 by cytokines was determined by Northern blot using the SW480 cell line. Active CARD15/NOD2 protein in SW480 cells was assessed by the combination of immunoprecipitation and immunoblotting using anti-CARD15/NOD2 antisera. To identify the functional role of CARD15/NOD2 in intestinal epithelial cells, gentamicin protection assays of Salmonella typhimurium were performed using Caco2 cells stably transfected with either wild-type CARD15/NOD2 or the 3020insC mutant associated with Crohn's disease. Results: CARD15/NOD2 mRNA was expressed in both intestinal epithelial cell lines and primary intestinal epithelial cells. CARD15/NOD2 mRNA and protein were up-regulated by tumor necrosis factor α (TNFα) in SW480 cells. The number of viable internalized S. typhimurium in Caco2 cells stably transfected with CARD15/NOD2 expression plasmid was lower than untransfected Caco2 cells or MOCK transfectant. In contrast, expression of a variant associated with Crohn's disease was unable to constrain bacterial survival. Conclusions: CARD15/NOD2 is expressed in intestinal epithelial cells and may serve as a key component of innate mucosal responses to luminal bacteria as an antibacterial factor. Failure in this activity may contribute to the development of Crohn's disease.
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- 2003
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36. Trefoil peptide expression and goblet cell number in rat intestine: effects of KGF and fasting-refeeding
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Catherine L. Farrell, Concepción Fernández-Estívariz, Robert R. Pascal, Timothy M. Wallace, Liang Gu, Li H. Gu, Dean P. Jones, Carolyn R. Jonas, Thomas R. Ziegler, Kathryn L. Devaney, and Daniel K. Podolsky
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Male ,medicine.medical_specialty ,Fibroblast Growth Factor 7 ,Physiology ,Cellular differentiation ,Blotting, Western ,Muscle Proteins ,Cell Count ,Biology ,digestive system ,Rats, Sprague-Dawley ,Eating ,chemistry.chemical_compound ,Intestinal mucosa ,Physiology (medical) ,Internal medicine ,medicine ,Animals ,RNA, Messenger ,Intestinal Mucosa ,Growth Substances ,education ,education.field_of_study ,Goblet cell ,Cell growth ,Trefoil factor 3 ,Body Weight ,Neuropeptides ,digestive, oral, and skin physiology ,Mucins ,Trefoil factor 2 ,Fasting ,Immunohistochemistry ,Rats ,Fibroblast Growth Factors ,Endocrinology ,medicine.anatomical_structure ,Gene Expression Regulation ,chemistry ,Goblet Cells ,Trefoil Factor-2 ,Keratinocyte growth factor ,Trefoil Factor-3 ,Food Deprivation ,Peptides - Abstract
The trefoil factor family peptides TFF1, TFF2, and TFF3 are important for gut mucosal protection and restitution. Keratinocyte growth factor (KGF) stimulates proliferation and differentiation of epithelial cells with potent effects on goblet cells. To investigate interactions between food intake and KGF, rats were fed ad libitum (control), fasted for 72 h, or fasted for 72 h and then refed for 72 h with or without KGF (3 mg · kg−1· day−1). With fasting, goblet cell number in duodenum increased, TFF3 mRNA in duodenum and jejunum decreased, and TFF3 protein did not change or increased. KGF during fasting stimulated colonic growth, normalized TFF3 mRNA in duodenum and jejunum, and broadly upregulated gut goblet cell number and TFF3 protein expression. With fasting-refeeding, KGF increased small bowel and colonic mucosal growth, goblet cell number, and TFF3 protein but had variable effects on TFF3 mRNA. KGF induced TFF2 mRNA and protein in duodenum and jejunum with both nutritional regimens. We conclude that nutrient availability modifies rat intestinal goblet cell number, TFF3 mRNA, and the gut-trophic effects of KGF in a region-specific manner. KGF enhances TFF2 expression in proximal small bowel and increases goblet cell number and TFF3 protein content throughout the intestine independent of food intake.
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- 2003
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37. Dynamics and Conductivity Near Quantum Criticality
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Daniel K. Podolsky, Daniel P. Arovas, Snir Gazit, and Assa Auerbach
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Physics ,Condensed matter physics ,Scalar (mathematics) ,Zero (complex analysis) ,01 natural sciences ,Optical conductivity ,010305 fluids & plasmas ,Criticality ,Quantum critical point ,Quantum mechanics ,0103 physical sciences ,Wave vector ,010306 general physics ,Quantum ,Line (formation) - Abstract
In this chapter we study the dynamical properties of relativistic O(N) models close to the quantum critical point at low temperature, frequency, and zero wave vector. We compute the universal line shape of the scalar susceptibility for O(N) models with \(N=2\), 3, and 4.
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- 2015
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38. Buckling transitions and clock order of two-dimensional Coulomb crystals
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Giovanna Morigi, Daniel K. Podolsky, Efrat Shimshoni, and Shmuel Fishman
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Physics ,Coulomb crystals ,Condensed matter physics ,Statistical Mechanics (cond-mat.stat-mech) ,QC1-999 ,General Physics and Astronomy ,Ionic crystal ,FOS: Physical sciences ,02 engineering and technology ,021001 nanoscience & nanotechnology ,Quantum information processing ,01 natural sciences ,Ion ,Order (biology) ,Buckling ,Quantum Gases (cond-mat.quant-gas) ,Lattice (order) ,0103 physical sciences ,Condensed Matter - Quantum Gases ,010306 general physics ,0210 nano-technology ,Condensed Matter - Statistical Mechanics - Abstract
Crystals of repulsively interacting ions in planar traps form hexagonal lattices, which undergo a buckling instability towards a multi-layer structure as the transverse trap frequency is reduced. Numerical and experimental results indicate that the new structure is composed of three planes, whose separation increases continuously from zero. We study the effects of thermal and quantum fluctuations by mapping this structural instability to the six-state clock model. A prominent implication of this mapping is that at finite temperature, fluctuations split the buckling instability into two thermal transitions, accompanied by the appearance of an intermediate critical phase. This phase is characterized by quasi-long-range order in the spatial tripartite pattern. It is manifested by broadened Bragg peaks at new wave vectors, whose line-shape provides a direct measurement of the temperature dependent exponent $\eta(T)$ characteristic of the power-law correlations in the critical phase. A quantum phase transition is found at the largest value of the critical transverse frequency: here the critical intermediate phase shrinks to zero. Moreover, within the ordered phase, we predict a crossover from classical to quantum behavior, signifying the emergence of an additional characteristic scale for clock order. We discuss experimental realizations with trapped ions and polarized dipolar gases, and propose that within accessible technology, such experiments can provide a direct probe of the rich phase diagram of the quantum clock model, not easily observable in condensed matter analogues. Therefore, this works highlights the potential for ionic and dipolar systems to serve as simulators for complex models in statistical mechanics and condensed matter physics., Comment: 18 pages, 3 figures
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- 2015
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39. Role of tumor necrosis factor receptor 2 (TNFR2) in colonic epithelial hyperplasia and chronic intestinal inflammation in mice
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Choon Jin Ooi, Emiko Mizoguchi, Atsushi Mizoguchi, Cox Terhorst, Atul K. Bhan, Elke Cario, Ype P. de Jong, Ramnik J. Xavier, Hidetoshi Takedatsu, and Daniel K. Podolsky
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STAT3 Transcription Factor ,Pathology ,medicine.medical_specialty ,Antimetabolites ,Colon ,medicine.medical_treatment ,Gene Expression ,Inflammation ,Biology ,Inflammatory bowel disease ,Receptors, Tumor Necrosis Factor ,Cell Line ,Proinflammatory cytokine ,Mice ,Antigens, CD ,medicine ,Animals ,Humans ,Receptors, Tumor Necrosis Factor, Type II ,RNA, Messenger ,Intestinal Mucosa ,Colitis ,Mice, Knockout ,Hyperplasia ,Hepatology ,Interleukin-6 ,Dextran Sulfate ,Gastroenterology ,medicine.disease ,DNA-Binding Proteins ,Mice, Inbred C57BL ,Cytokine ,Bromodeoxyuridine ,Chronic Disease ,Trans-Activators ,Indicators and Reagents ,Tumor necrosis factor alpha ,Tumor necrosis factor receptor 2 ,medicine.symptom ,Genes, T-Cell Receptor alpha ,Interleukin-1 - Abstract
Background & Aims: Tumor necrosis factor (TNF) induces multiple effects including cell proliferation and death by ligation with TNF receptor type II (TNFR2). We studied the role of TNFR2 in chronic inflammation–induced colonic epithelial alteration. Methods: TNFR2 expression in colonic epithelial cells (CECs) was assessed by ribonuclease protection assay (RPA) and immunohistochemistry (IHC) in patients with inflammatory bowel disease (IBD) and murine colitis models. TNFR2 expression was also analyzed using COLO205 cells. The role of TNFR2 in colonic epithelial homeostasis was examined by generating interleukin 6–deficient TCRαKO (αIL-6DKO) or TNFR2-deficient TCRα (αTNFR2DKO) mice. Results: TNFR2 expression was up-regulated in CEC in both human ulcerative colitis and Crohn's disease. In vitro studies showed that TNFR2 expression was up-regulated by a cooperative effect of key proinflammatory cytokines. By RPA, the increased expression of TNFR2 was detectable in TCRαKO mice with colitis compared with TCRαKO mice without colitis or wild-type mice. In αIL-6DKO mice, TNFR2 expression, proliferation, and nuclear factor kappa B activation of CECs were markedly reduced compared with TCRαKO mice. αTNFR2 mice also showed significantly less colonic epithelial proliferation compared with TCRαKO mice. Conclusions: Expression of TNFR2 is consistently increased on CECs in both murine colitis models as well as patients with IBD. TNFR2 may play an important role in colonic inflammation–associated alteration in the intestinal epithelium. GASTROENTEROLOGY 2002;122:134-144
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- 2002
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40. Dynamic spin fluctuations atT→0in a spin-12ferromagnetic kagome lattice
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V. Ravi Chandra, Lital Marcipar, Snir Gazit, Daniel P. Arovas, Daniel K. Podolsky, Amit Keren, and Oren Ofer
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Physics ,Coupling constant ,Condensed matter physics ,Spin polarization ,Muon spin spectroscopy ,Condensed Matter Physics ,Electronic, Optical and Magnetic Materials ,law.invention ,Magnetization ,Ferromagnetism ,law ,Condensed Matter::Strongly Correlated Electrons ,Quantum spin liquid ,Electron paramagnetic resonance ,Anisotropy - Abstract
We report magnetization, electron spin resonance (ESR), and muon spin relaxation ($\mu $SR) measurements on single crystals of the $S=1/2$ (Cu$% ^{+2}$) kagom\'{e} compound Cu(1,3-benzendicarboxylate). The $\mu $SR is carried to temperatures as low as 45 mK. The spin Hamiltonian parameters are determined from the analysis of the magnetization and ESR data. We find that this compound has anisotropic ferromagnetic interactions. Nevertheless, no spin freezing is observed even at temperatures two orders of magnitude lower than the coupling constants. In light of this finding, the relation between persistent spin dynamics and spin liquid are reexamined.
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- 2014
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41. From classical to quantum criticality
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Tommaso Calarco, Simone Montangero, Efrat Shimshoni, Shmuel Fishman, Giovanna Morigi, Daniel K. Podolsky, and Pietro Silvi
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Electronic, Optical and Magnetic Materials ,Condensed Matter Physics ,Quantum phase transition ,Physics ,Statistical Mechanics (cond-mat.stat-mech) ,Quantum dynamics ,Density matrix renormalization group ,FOS: Physical sciences ,Quantum phases ,01 natural sciences ,Quantum chaos ,010305 fluids & plasmas ,Quantum mechanics ,Quantum electrodynamics ,Quantum critical point ,0103 physical sciences ,Electronic ,Quantum algorithm ,Optical and Magnetic Materials ,010306 general physics ,Quantum dissipation ,Condensed Matter - Statistical Mechanics - Abstract
We study the crossover from classical to quantum phase transitions at zero temperature within the framework of $\phi^4$ theory. The classical transition at zero temperature can be described by the Landau theory, turning into a quantum Ising transition with the addition of quantum fluctuations. We perform a calculation of the transition line in the regime where the quantum fluctuations are weak. The calculation is based on a renormalization group analysis of the crossover between classical and quantum transitions, and is well controlled even for space-time dimensionality $D$ below 4. In particular, for $D=2$ we obtain an analytic expression for the transition line which is valid for a wide range of parameters, as confirmed by numerical calculations based on the Density Matrix Renormalization Group. This behavior could be tested by measuring the phase diagram of the linear-zigzag instability in systems of trapped ions or repulsively-interacting dipoles., Comment: 7 pages, 3 figures
- Published
- 2014
42. Intestinal Trefoil Factor Induces Decay-Accelerating Factor Expression and Enhances the Protective Activities Against Complement Activation in Intestinal Epithelial Cells
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Akira Andoh, Daniel K. Podolsky, Koichi Kinoshita, and Ian M. Rosenberg
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Transcriptional Activation ,RNA Stability ,Immunology ,Muscle Proteins ,Biology ,Cell Line ,Tumor Cells, Cultured ,medicine ,Animals ,Humans ,Immunology and Allergy ,Electrophoretic mobility shift assay ,RNA, Messenger ,Northern blot ,Intestinal Mucosa ,Growth Substances ,Promoter Regions, Genetic ,Complement Activation ,Immunity, Mucosal ,Decay-accelerating factor ,Messenger RNA ,Reporter gene ,CD55 Antigens ,Neuropeptides ,Mucins ,NF-kappa B ,Complement C3 ,Molecular biology ,Epithelium ,Rats ,Complement system ,Kinetics ,medicine.anatomical_structure ,Cell culture ,Protein Biosynthesis ,Trefoil Factor-2 ,Trefoil Factor-3 ,Peptides - Abstract
Mucosal damage induces a massive influx of serum complement components into the lumen. The epithelium produces a number of factors that can potentially ameliorate injury including intestinal trefoil factor (ITF), a small protease-resistant peptide produced and secreted onto the mucosal surface by goblet cells, and decay-accelerating factor (DAF), a protein produced by columnar epithelium which protects the host tissue from autologous complement injury. However, coordination of these intrinsic defensive products has not been delineated. DAF protein and mRNA expression were evaluated by immunoblotting and Northern blotting, respectively. NF-κB-DNA binding activity and DAF promoter activity were assessed by an electrophoretic gel mobility shift assay and a reporter gene luciferase assay, respectively. ITF induced a dose- and time-dependent increase in DAF protein and mRNA expression in human (HT-29 and T84) and rat (IEC-6) intestinal epithelial cells. In differentiated T84 cells grown on cell culture inserts, basolateral stimulation with ITF strongly enhanced DAF expression, but apical stimulation had no effects. The C3 deposition induced by complement activation was significantly blocked by the treatment with ITF. In HT-29 cells, ITF increased the stability of DAF mRNA. ITF also enhanced the promoter activity of the DAF gene via NF-κB motif and induced activation of NF-κB-DNA binding activity. ITF promotes protection of epithelial cells from complement activation via up-regulation of DAF expression, contributing to a robust mucosal defense.
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- 2001
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43. Interleukin-2 Receptor β Subunit-dependent and -independent Regulation of Intestinal Epithelial Tight Junctions
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Hans Christian Reinecker, Tetsushi Kinugasa, Xiubin Gu, Takanori Sakaguchi, Raisuke Nishiyama, Richard P. MacDermott, and Daniel K. Podolsky
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Protein subunit ,Caveolin 1 ,Biology ,Transfection ,Zonula Occludens-2 Protein ,Occludin ,Caveolins ,Biochemistry ,Tight Junctions ,Caveolin ,Tumor Cells, Cultured ,Humans ,Intestinal Mucosa ,Phosphorylation ,Claudin ,Molecular Biology ,Barrier function ,DNA Primers ,Interleukin-15 ,Base Sequence ,Tight junction ,Membrane Proteins ,Receptors, Interleukin-2 ,Cell Biology ,Phosphoproteins ,Up-Regulation ,Cell biology ,Zonula Occludens-1 Protein ,Signal transduction ,Signal Transduction - Abstract
Interleukin (IL)-15 is able to regulate tight junction formation in intestinal epithelial cells. However, the mechanisms that regulate the intestinal barrier function in response to IL-15 and the involved subunits of the IL-15 ligand-receptor system are unknown. We determined the IL-2Rbeta subunit and IL-15-dependent regulation of tight junction-associated proteins in the human intestinal epithelial cell line T-84. The IL-2Rbeta subunit was expressed and induced signal transduction in caveolin enriched rafts in intestinal epithelial cells. IL-15-mediated tightening of intestinal epithelial monolayers correlated with the enhanced recruitment of tight junction proteins into Triton X-100-insoluble protein fractions. IL-15-mediated up-regulation of ZO-1 and ZO-2 expression was independent of the IL-2Rbeta subunit, whereas the phosphorylation of occludin and enhanced membrane association of claudin-1 and claudin-2 by IL-15 required the presence of the IL-2Rbeta subunit. Recruitment of claudins and hyperphosphorylated occludin into tight junctions resulted in a more marked induction of tight junction formation in intestinal epithelial cells than the up-regulation of ZO-1 and ZO-2 by itself. The regulation of the intestinal epithelial barrier function by IL-15 involves IL-2Rbeta-dependent and -independent signaling pathways leading to the recruitment of claudins, hyperphosphorylated occludin, ZO-1, and ZO-2 into the tight junctional protein complex.
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- 2001
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44. Hypoxia-Inducible Factor 1–Dependent Induction of Intestinal Trefoil Factor Protects Barrier Function during Hypoxia
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Cormac T. Taylor, Robert M. Hershberg, Jerrold R. Turner, Katrina M. Comerford, Glenn T. Furuta, Sean P. Colgan, Sailaja Narravula, and Daniel K. Podolsky
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Gene Expression ,Muscle Proteins ,Mice ,0302 clinical medicine ,Intestinal mucosa ,Immunology and Allergy ,Intestinal Mucosa ,Growth Substances ,Barrier function ,transcription factor ,0303 health sciences ,education.field_of_study ,Trefoil factor 3 ,Trefoil factor 2 ,Nuclear Proteins ,Cell Hypoxia ,DNA-Binding Proteins ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,Original Article ,Hypoxia-Inducible Factor 1 ,Trefoil Factor-2 ,medicine.symptom ,Trefoil Factor-3 ,gastrointestinal disease ,Endothelium ,endothelium ,Colon ,Immunology ,Biology ,Cell Line ,03 medical and health sciences ,Dogs ,medicine ,Animals ,Humans ,education ,Transcription factor ,030304 developmental biology ,intestinal permeability ,Neuropeptides ,Mucins ,Hypoxia (medical) ,Hypoxia-Inducible Factor 1, alpha Subunit ,Molecular biology ,Caco-2 ,Caco-2 Cells ,epithelium ,Peptides ,Transcription Factors - Abstract
Mucosal organs such as the intestine are supported by a rich and complex underlying vasculature. For this reason, the intestine, and particularly barrier-protective epithelial cells, are susceptible to damage related to diminished blood flow and concomitant tissue hypoxia. We sought to identify compensatory mechanisms that protect epithelial barrier during episodes of intestinal hypoxia. Initial studies examining T84 colonic epithelial cells revealed that barrier function is uniquely resistant to changes elicited by hypoxia. A search for intestinal-specific, barrier-protective factors revealed that the human intestinal trefoil factor (ITF) gene promoter bears a previously unappreciated binding site for hypoxia-inducible factor (HIF)-1. Hypoxia resulted in parallel induction of ITF mRNA and protein. Electrophoretic mobility shift assay analysis using ITF-specific, HIF-1 consensus motifs resulted in a hypoxia-inducible DNA binding activity, and loading cells with antisense oligonucleotides directed against the α chain of HIF-1 resulted in a loss of ITF hypoxia inducibility. Moreover, addition of anti-ITF antibody resulted in a loss of barrier function in epithelial cells exposed to hypoxia, and the addition of recombinant human ITF to vascular endothelial cells partially protected endothelial cells from hypoxia-elicited barrier disruption. Extensions of these studies in vivo revealed prominent hypoxia-elicited increases in intestinal permeability in ITF null mice. HIF-1–dependent induction of ITF may provide an adaptive link for maintenance of barrier function during hypoxia.
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- 2001
45. Activation of natural killer T cells by α-galactosylceramide in the presence of CD1d provides protection against colitis in mice
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Susan J. Hagen, Teruyuki Sakai, Yasuhiko Koezuka, Lawrence J. Saubermann, Steven P. Balk, Paul L. Beck, Cox Terhorst, Daniel K. Podolsky, Mark A. Exley, Hyun S. Kim, Richard S. Pitman, Ype P. de Jong, Kazuhiro Motoki, Osamu Kanauchi, Mark Ryan, Richard S. Blumberg, and Scott B. Snapper
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Adoptive cell transfer ,Genes, RAG-1 ,T-Lymphocytes ,Galactosylceramides ,chemical and pharmacologic phenomena ,Natural killer cell ,Antigens, CD1 ,Mice ,Interleukin 21 ,Antigen ,medicine ,Animals ,Protein Isoforms ,Intestinal Mucosa ,Colitis ,Mice, Knockout ,Hepatology ,biology ,Dextran Sulfate ,Gastroenterology ,Natural killer T cell ,medicine.disease ,Molecular biology ,Killer Cells, Natural ,Mice, Inbred C57BL ,carbohydrates (lipids) ,medicine.anatomical_structure ,CD1D ,Immunology ,biology.protein ,Interleukin 12 ,lipids (amino acids, peptides, and proteins) ,Antigens, CD1d - Abstract
Background & aims CD1d is a major histocompatibility complex class I-like molecule that presents glycolipid antigens to a subset of natural killer (NK)1.1(+) T cells. These NK T cells exhibit important immunoregulatory functions in several autoimmune disease models. Methods To investigate whether CD1d and NK T cells have a similar role in intestinal inflammation, the effects of the glycolipid, alpha-galactosylceramide (alpha-GalCer), on dextran sodium sulfate (DSS)-induced colitis were examined. Wild-type (WT), CD1d(-/-), and RAG(-/-) mice were examined for their response to either alpha-GalCer or the control analogue, alpha-mannosylceramide (alpha-ManCer). Results WT mice, but not CD1d(-/-) and RAG(-/-) mice, receiving alpha-GalCer had a significant improvement in DSS-induced colitis based on body weight, bleeding, diarrhea, and survival when compared with those receiving alpha-ManCer. Elimination of NK T cells through antibody-mediated depletion resulted in a reduction of the effect of alpha-GalCer. Furthermore, adoptive transfer of NK T cells preactivated by alpha-GalCer, but not alpha-ManCer, resulted in diminished colitis. Using a fluorescent-labeled analogue of alpha-GalCer, confocal microscopy localized alpha-GalCer to the colonic surface epithelium of WT but not CD1d(-/-) mice, indicating alpha-GalCer binds CD1d in the intestinal epithelium and may be functionally active at this site. Conclusions These results show an important functional role for NK T cells, activated by alpha-GalCer in a CD1d-restricted manner, in regulating intestinal inflammation.
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- 2000
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46. Review article: healing after inflammatory injury - coordination of a regulatory peptide network
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Daniel K. Podolsky
- Subjects
Lamina propria ,Hepatology ,medicine.medical_treatment ,Gastroenterology ,Regulatory peptide ,Biology ,Epithelium ,Cell biology ,Review article ,Cytokine ,medicine.anatomical_structure ,Cell culture ,Immunology ,medicine ,Pharmacology (medical) ,Autocrine signalling ,Receptor - Abstract
Summary Intestinal epithelial cells are capable of producing a variety of cytokines and other regulatory factors that can affect functional regulation of the epithelium itself, through autocrine and paracrine mechanisms, as well as functional integration with lamina propria populations. The bi-directional nature of this cytokine network is now apparent, with the demonstration that both rat and human intestinal epithelium-derived cell lines possess a much greater array of cytokine receptors than previously anticipated.
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- 2000
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47. Intestinal trefoil factor confers colonic epithelial resistance to apoptosis
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Koichi Kinoshita, Douglas Taupin, and Daniel K. Podolsky
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Programmed cell death ,Colon ,Recombinant Fusion Proteins ,Gene Expression ,Muscle Proteins ,Apoptosis ,Mice, Inbred Strains ,Protein Serine-Threonine Kinases ,Biology ,Receptors, Tumor Necrosis Factor ,Cell Line ,3-Phosphoinositide-Dependent Protein Kinases ,Wortmannin ,Mice ,Phosphatidylinositol 3-Kinases ,chemistry.chemical_compound ,Intestinal mucosa ,Epidermal growth factor ,Proto-Oncogene Proteins ,Tumor Cells, Cultured ,Animals ,Humans ,Phosphatidylinositol ,Intestinal Mucosa ,Growth Substances ,education ,Mice, Knockout ,education.field_of_study ,Multidisciplinary ,Trefoil factor 3 ,Neuropeptides ,Mucins ,Trefoil factor 2 ,Biological Sciences ,Molecular biology ,Genes, bcl-2 ,Enzyme Activation ,ErbB Receptors ,Mice, Inbred C57BL ,chemistry ,Colonic Neoplasms ,Cancer research ,RNA ,Trefoil Factor-2 ,Trefoil Factor-3 ,Tumor Suppressor Protein p53 ,Peptides ,Proto-Oncogene Proteins c-akt - Abstract
Intestinal trefoil factor (ITF) is an essential regulator of colonic epithelial restitution, the rapid migration of colonocytes over mucosal wounds. High levels of ITF are frequently present in colorectal cancers and derived cell lines. Mucosal restitution requires the detachment of epithelium from substrate, which would be expected to induce apoptosis. However, mice deficient in ITF showed an increase in colonocyte apoptosis unaccompanied by changes in expression of receptor-related (TNFR/Fas) or stress-related (Bcl-family) cell death regulators. An ITF-expressing colonic (HT-ITF1) cell line was resistant to apoptosis induced by serum starvation and ceramide. Exogenous ITF also protected another human colonic carcinoma-derived cell line (HCT116) and a nontransformed rat intestinal epithelial cell line (IEC-6) from apoptosis. This effect was abrogated by wortmannin and tyrphostin A25, indicating the potential involvement of phosphatidylinositol 3-kinase and epidermal growth factor (EGF) receptor activation. Expression of phosphorylated Akt, which lies downstream of phosphatidylinositol 3-kinase activation, was elevated in this HT-29-ITF line. p53-dependent cell death in the AGS human gastric cancer cell line after etoposide was similarly inhibited by transient expression of ITF but not a C-terminal truncation mutant of ITF, and it required functional phosphatidylinositol 3-kinase and EGF receptor. These findings support a central role for ITF in the maintenance of intestinal mucosal continuity, and conversely demonstrate the potential for ITF expression to confer resistance of colorectal tumors to therapy.
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- 2000
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48. New life in a sleeper: Thalidomide and Crohn's disease
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Daniel K. Podolsky and Bruce E. Sands
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Oncology ,Thalidomide ,medicine.medical_specialty ,Crohn's disease ,Hepatology ,business.industry ,Internal medicine ,Gastroenterology ,Medicine ,business ,medicine.disease ,medicine.drug - Published
- 1999
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49. A paradoxical reduction in susceptibility to colonic injury upon targeted transgenic ablation of goblet cells
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Daniel K. Podolsky, Hiroshi Itoh, Ramnik J. Xavier, Nagamu Inoue, and Paul L. Beck
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Genetically modified mouse ,Time Factors ,Colon ,Transgene ,Cell ,Muscle Proteins ,Mice, Transgenic ,Mucin 2 ,Biology ,digestive system ,Article ,Mice ,Genes, Reporter ,In vivo ,medicine ,Animals ,Diphtheria Toxin ,RNA, Messenger ,Growth Substances ,Promoter Regions, Genetic ,education ,Acetic Acid ,Mucin-3 ,Diphtheria toxin ,Mucin-2 ,education.field_of_study ,Histocytochemistry ,Trefoil factor 3 ,Body Weight ,Dextran Sulfate ,Neuropeptides ,Mucins ,Trefoil factor 2 ,General Medicine ,beta-Galactosidase ,Molecular biology ,medicine.anatomical_structure ,Goblet Cells ,Trefoil Factor-2 ,Trefoil Factor-3 ,Peptides - Abstract
Goblet cells are the major mucus-producing cells of the intestine and are presumed to play an important role in mucosal protection. However, their functional role has not been directly assessed in vivo. In initial studies, a 5' flanking sequence of the murine intestinal trefoil factor (ITF) gene was found to confer goblet cell-specific expression of a transgene. To assess the role of goblet cells in the intestine, we generated transgenic mice in which approximately 60% of goblet cells were ablated by the expression of an attenuated diphtheria toxin (DT) gene driven by the ITF promoter; other cell lineages were unaffected. We administered 2 exogenous agents, dextran sodium sulfate (DSS) and acetic acid, to assess the susceptibility of mITF/DT-A transgenic mice to colonic injury. After oral administration of DSS, 55% of control mice died, whereas DT transgenic mice retained their body weight and less than 5% died. Similarly, 30% of the wild-type mice died after mucosal administration of acetic acid, compared with 3.2% of the transgenic mice. Despite the reduction in goblet-cell number, the total amount of ITF was increased in the mITF/DT-A transgenic mice, indicating inducible compensatory mechanisms. These results suggest that goblet cells contribute to mucosal protection and repair predominantly through production of trefoil peptides.
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- 1999
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50. V. Innate mechanisms of mucosal defense and repair: the best offense is a good defense
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Daniel K. Podolsky
- Subjects
Lamina propria ,Hepatology ,Physiology ,medicine.medical_treatment ,Gastroenterology ,Inflammation ,Biology ,Epithelium ,Cell biology ,Extracellular matrix ,Cytokine ,medicine.anatomical_structure ,Immune system ,Immunity ,Physiology (medical) ,Immunology ,medicine ,medicine.symptom ,Wound healing - Abstract
Well-coordinated mechanisms have evolved that provide both innate protection against gastrointestinal mucosal injury and facilitation of rapid mucosal repair following mucosal damage. Generic protection from injury is provided by intrinsic structural features of the epithelium that form a highly competent barrier and a complex formed at the apical surface by trefoil peptides that comprise the interface between mucosa and lumen. When the epithelial barrier has been broken, regardless of the nature of the injury, epithelial surface continuity is rapidly reestablished through restitution as cells migrate and elongate. This process is promoted by trefoil peptides at the apical surface and a large array of cytokines and growth factors acting at the basolateral pole. Many of these regulatory peptides are products of the immune and other lamina propria cell populations, which are activated following disruption of the mucosal barrier. Thus efforts to repair the epithelium follow inherently from inflammatory effects after initial damage; the repair process in turn may allow abrogation of further inflammation. Ultimate repair of injury requires both proliferative replacement of damaged epithelial cells and remodeling of extracellular matrix and deeper cell populations to restore normal architecture and a fully functional mucosa.
- Published
- 1999
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