97 results on '"Chroboczek J"'
Search Results
2. Impact of dopant species on the interfacial trap density and mobility in amorphous In-X-Zn-O solution-processed thin-film transistors
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Benwadih, Mohammed, Chroboczek, J. A., Ghibaudo, Gerard, Coppard, Romain, and Vuillaume, Dominique
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Condensed Matter - Mesoscale and Nanoscale Physics ,Condensed Matter - Materials Science - Abstract
Alloying of In/Zn oxides with various X atoms stabilizes the IXZO structures but generates electron traps in the compounds, degrading the electron mobility. To assess whether the latter is linked to the oxygen affinity or the ionic radius, of the X element, several IXZO samples are synthesized by the sol-gel process, with a large number (14) of X elements. The IXZOs are characterized by XPS, SIMS, DRX, and UV-spectroscopy and used for fabricating thin film transistors. Channel mobility and the interface defect density NST, extracted from the TFT electrical characteristics and low frequency noise, followed an increasing trend and the values of mobility and NST are linked by an exponential relation. The highest mobility (8.5 cm2/Vs) is obtained in In-Ga-Zn-O, and slightly lower value for Sb and Sn-doped IXZOs, with NST is about 2E12 cm2/eV, close to that of the In-Zn-O reference TFT. This is explained by a higher electronegativity of Ga, Sb, and Sn than Zn and In, their ionic radius values being close to that of In and Zn. Consequently, Ga, Sb, and Sn induce weaker perturbations of In-O and Zn-O sequences in the sol-gel process, than the X elements having lower electronegativity and different ionic radius. The TFTs with X = Ca, Al, Ni and Cu exhibited the lowest mobility and NST > 1E13 cm2/eV, most likely because of metallic or oxide clusters formation.
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- 2014
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3. A transfecting peptide derived from adenovirus fiber protein
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Zhang, F, Andreassen, P, Fender, P, Geissler, E, Hernandez, J-F, and Chroboczek, J
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- 1999
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4. Adenovirus-mediated catalase gene transfer reduces oxidant stress in human, porcine and rat pancreatic islets
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Benhamou, P. Y., Moriscot, C., Richard, M. J., Beatrix, O., Badet, L., Pattou, F., Kerr-Conte, J., Chroboczek, J., Lemarchand, P., and Halimi, S.
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- 1998
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5. A transfecting peptide derived from adenovirus fiber protein
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Pascal Fender, Zhang F, Geissler E, Chroboczek J, Hernandez Jf, and Andreassen P
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Electrophoresis ,Time Factors ,media_common.quotation_subject ,Genetic Vectors ,Peptide ,Gene delivery ,Biology ,Transfection ,medicine.disease_cause ,Endocytosis ,Adenoviridae ,Capsid ,Genetics ,medicine ,Humans ,Internalization ,Molecular Biology ,media_common ,chemistry.chemical_classification ,Microscopy, Confocal ,Genetic transfer ,Proteins ,Genetic Therapy ,Molecular biology ,Cell biology ,chemistry ,Molecular Medicine ,Capsid Proteins ,Peptides ,Nuclear localization sequence ,HeLa Cells - Abstract
New strategies to improve the outcome of gene therapy often employ a nonviral gene delivery, which is most likely to fulfil microbiological safety criteria and be retained in the clinical setting. Here we show that efficient gene transfer can be achieved in vitro using as a vector a polyvalent peptide derived from the N-terminal sequence of the human adenovirus fiber protein. The level of transfection is better than that obtained with the two liposomes, DOTAP and DOSPER. Internalization was studied by confocal microscopy using fluorescently marked peptide and DNA. The peptide alone is targeted to the nucleus and concentrated within the nucleolus. Similarly, DNA complexed with peptide also enters the nucleolus, where it is retained for at least 48 h. Peptide I appears to attach to cells by a saturable process, as preincubation of cells with peptide blocks transfection and there is no transfection at 4 degrees C. The peptide contains three domains: a nuclear localization signal of adenovirus fiber protein; a domain containing hydrophobic and polar residues harboring an internalization signal for receptor-mediated endocytosis; and a stretch of lysines. Each of these domains is required for optimum gene transfer. Peptide I may be an interesting alternative to known vectors for gene transfer, for local administration and for ex vivo applications.
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- 1999
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6. Low-frequency noise in oxide-based (TiN/HfOx/Pt) resistive random access memory cells
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Fang, Z., Chroboczek, J. A., Ghibaudo, G., Buckley, J., De Salvo, B., Li, X., Yu, Hongyu, Kwong, Dim Lee, and School of Electrical and Electronic Engineering
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Engineering::Electrical and electronic engineering [DRNTU] - Abstract
In this brief, low-frequency noise (LFN) characteristics are studied in oxide-based (TiN/HfOx/Pt) resistive random access nemory cells having different dimensions. It is confirmed that, for the low resistance state (LRS), current conduction is localized without an area dependence, whereas for the high resistance state, it is a uniform leakage current throughout the whole device area. An LFN model is proposed for the filamentary LRS based on the carrier number fluctuation approach, allowing physical analysis of filament characteristics and the surrounding trap concentration.
- Published
- 2012
7. Using the Whole-Genome Sequence To Characterize and Name Human Adenoviruses
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Seto, D., Chodosh, J., Brister, J. R., Jones, M. S., Akusjärvi, G., Arnold, J.C., Blanchette, P., Boulanger, P., Branton, P.E., Casimiro, D.R., Chiu, C.Y., Chroboczek, J., Curiel, D.T., Dobner, T., Doerfler, W., Dyer, D.W., Fender, P., Ferreyra, L.R., Gooding, L.R., Grand, R.J., Greber, U.F., Heim, A., Hemmi, S., Henquell, C., Kremer, E.J., Leppard, K.N., Lieber, A., Lion, T., Lukashev, A.N., Madupu, R., Mathews, M.B., Mitraki, A., Nates, S.V., Nemerow, G.R., Ornelles, D.A., Qu, Z., Reddy, V.S., San Martin, C., Schoehn, G., Smith, J.G., Stewart, P.L., Szolajska, E., Tibbetts, C., Tollefson, A.E., Turnell, A.S., Raaij, M.J., Wan, C., Wang, Y., Wong, S., Weitzman, M.D., Wilson, J.M., Wold, W.S., Xu, Wei-Jiang, Yuan, X., Wei Zhang, Q., Zhou, R., Institut de Génétique Moléculaire de Montpellier (IGMM), and Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)
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Human Adenoviruses ,Adenoviruses ,Human/*classification/*genetics Base Sequence DNA ,Immunology ,Viral Humans *Terminology as Topic ,Genome, Viral ,Computational biology ,Biology ,Microbiology ,Genome ,03 medical and health sciences ,Viral genetics ,Terminology as Topic ,Virology ,Humans ,[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology ,Base sequence ,Dna viral ,Letters to the Editor ,030304 developmental biology ,Genetics ,Whole genome sequencing ,0303 health sciences ,Base Sequence ,030306 microbiology ,Adenoviruses, Human ,Viral/*chemistry/*genetics *Genome ,Human genetics ,Editorial ,Insect Science ,DNA, Viral ,Human taxonomy - Abstract
We propose that human adenoviruses (HAdVs) be identified, characterized, and typed on the basis of complete genome sequence analyses rather than serological approaches. This idea has recently percolated through the community of adenovirologists. As a result, an open-floor discussion took place at
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- 2011
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8. Low-Frequency Noise in Oxide-Based $(\hbox{TiN}/ \hbox{HfO}_{x}/\hbox{Pt})$ Resistive Random Access Memory Cells
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Fang, Z., primary, Yu, H. Y., additional, Chroboczek, J. A., additional, Ghibaudo, G., additional, Buckley, J., additional, DeSalvo, B., additional, Li, X., additional, and Kwong, D. L., additional
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- 2012
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9. Synthesis, cellular localization, and quantification of penton-dodecahedron in serotype 3 adenovirus-infected cells
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Fender, P., primary, Boussaid, A., additional, Mezin, P., additional, and Chroboczek, J., additional
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- 2005
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10. Adenovirus Dodecahedron Allows Large Multimeric Protein Transduction in Human Cells
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Fender, P., primary, Schoehn, G., additional, Foucaud-Gamen, J., additional, Gout, E., additional, Garcel, A., additional, Drouet, E., additional, and Chroboczek, J., additional
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- 2003
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11. Adenovirus 3 penton dodecahedron exhibits structural changes of the base on fibre binding.
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Schoehn, G., primary, Fender, P., additional, Chroboczek, J., additional, and Hewat, E. A., additional
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- 1996
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12. Antigenic Sites on the Receptor-Binding Domain of Human Adenovirus Type 2 Fiber
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FENDER, P., primary, KIDD, A.H., additional, BREBANT, R., additional, ÖBERG, M., additional, DROUET, E., additional, and CHROBOCZEK, J., additional
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- 1995
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13. Cell-binding domain of adenovirus serotype 2 fiber
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Louis, N, primary, Fender, P, additional, Barge, A, additional, Kitts, P, additional, and Chroboczek, J, additional
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- 1994
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14. Low-Frequency Noise in Oxide-Based (\TiN/ \HfOx/\Pt) Resistive Random Access Memory Cells.
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Fang, Z., Yu, H. Y., Chroboczek, J. A., Ghibaudo, G., Buckley, J., DeSalvo, B., Li, X., and Kwong, D. L.
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RANDOM access memory ,FERROELECTRIC RAM ,TIN ,ELECTRIC resistance ,ELECTRIC noise ,FLUCTUATIONS (Physics) ,CONDUCTION electrons ,ELECTRIC switchgear - Abstract
In this brief, low-frequency noise (LFN) characteristics are studied in oxide-based (\TiN/\HfOx/\Pt) resistive random access nemory cells having different dimensions. It is confirmed that, for the low resistance state (LRS), current conduction is localized without an area dependence, whereas for the high resistance state, it is a uniform leakage current throughout the whole device area. An LFN model is proposed for the filamentary LRS based on the carrier number fluctuation approach, allowing physical analysis of filament characteristics and the surrounding trap concentration. [ABSTRACT FROM AUTHOR]
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- 2012
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15. Human adenovirus serotype 3 fiber protein. Comparison of native and recombinant proteins
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Albiges-Rizo, C, primary, Barge, A, additional, Ruigrok, R W, additional, Timmins, P A, additional, and Chroboczek, J, additional
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- 1991
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16. Hexamer of bacteriophage f2 coat protein as a repressor of bacteriophage RNA polymerase synthesis
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Chroboczek, J and Zagorski, W
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Formation of complex I between phage f2 RNA and coat protein, leading to repression of phage RNA polymerase synthesis, depends nonlinearly upon the concentration of the coat protein. Maximum formation of complex I was observed when six molecules of coat protein were bound to one molecule of RNA. RNase digestion of a glutaraldehyde-fixed complex left, as the products, coat protein oligomers. The heaviest, hexamers, predominated in the mixture. It was also shown that, in an ionic environment required for phage protein synthesis, coat protein at a concentration optimum for complex I formation exists in solution as a dimer. The results indicate that the translational repression of the RNA polymerase cistron is due to a cooperative attachment to phage template of three dimers of coat protein, forming a hexameric cluster on an RNA strand.
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- 1975
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17. Template activity of complexes formed between bacteriophage f2 RNA and coat protein
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Zagórska, L, Chroboczek, J, and Zagórski, W
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Formation of complexes between f2 RNA polymerase cistron was partially inhibited, some RNA and coat protein was studied using salt conditions which are optimum for phage protein synthesis. In this ionic environment, coat protein precipitation can be prevented by sulfhydryl group-protecting agents. Complexes formed at different protein-RNA input molar ratios were isolated and tested for template activity in an in vitro protein synthesizing system. Simultaneously, the number of protein molecules bound per RNA strand in such complexes was measured by the membrane (Millipore) filtration technique. Under conditions in which translation of the RNA strands were complexed with six molecules of coat protein, whereas some remained unbound. Strong inhibition of the translation of the RNA polymerase cistron was observed when each of the RNA strands present in the mixture was associated with six molecules of coat protein.
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- 1975
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18. Tyrosyl-tRNA synthetase from wheat germ.
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Quivy, J P and Chroboczek, J
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Tyrosyl-tRNA synthetase (TyrRS) was purified 5,000-fold from wheat germ extract by ultracentrifugation, precipitation with ammonium acetate, and column chromatography. Under denaturing conditions the enzyme ran as a single band on SDS-polyacrylamide electrophoresis with an apparent Mr of 55,000. The native molecular weight determined by gel filtration was 110,000, suggesting a quaternary structure of an alpha 2 type for native TyrRS. Purified enzyme activity, based on the aminoacylation reaction, was studied in terms of Mg2+, ATP, pH, and KCl dependence. Optimum concentrations were 6 mM Mg2+, 4 mM ATP, and 200 mM KCl at pH 8. The Km values for ATP, tyrosine, and tRNA were 40, 3.3, and 1.5 microM, respectively. The instability of the TyrRS activity and the methods used for stabilizing it are discussed. In wheat germ extract we found a second tyrosylating activity that works with Escherichia coli tRNA, but not with wheat germ tRNA. We believe that this enzyme is the mitochondrial tyrosyl-tRNA synthetase of wheat germ.
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- 1988
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19. Selected SOI puzzles and tentative answers
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Institut de Microélectronique, Electromagnétisme et Photonique - Laboratoire d'Hyperfréquences et Caractérisation (IMEP-LAHC) ; Université de Savoie - Université Joseph Fourier - Grenoble I - Institut National Polytechnique de Grenoble (INPG) - CNRS, Laboratoire d'Electronique et des Technologies de l'Information (LETI) ; CEA, Na, K.-I., Van Den Daele, W., Pham-Nguyen, L., Bawedin, M., Park, K.-H., Wan, J., Tacchi, K., Chang, S.-J., Ionica, I., Bae, Y.-H., Chroboczek, J.-A., Fenouillet-Beranger, C., Ernst, T., Augendre, E., Le Royer, C., Zaslavsky, A., Iwai, H., Cristoloveanu, S., Institut de Microélectronique, Electromagnétisme et Photonique - Laboratoire d'Hyperfréquences et Caractérisation (IMEP-LAHC) ; Université de Savoie - Université Joseph Fourier - Grenoble I - Institut National Polytechnique de Grenoble (INPG) - CNRS, Laboratoire d'Electronique et des Technologies de l'Information (LETI) ; CEA, Na, K.-I., Van Den Daele, W., Pham-Nguyen, L., Bawedin, M., Park, K.-H., Wan, J., Tacchi, K., Chang, S.-J., Ionica, I., Bae, Y.-H., Chroboczek, J.-A., Fenouillet-Beranger, C., Ernst, T., Augendre, E., Le Royer, C., Zaslavsky, A., Iwai, H., and Cristoloveanu, S.
- Abstract
International audience
20. Static and low frequency noise characterization of P-type polymer and N-type small molecule OFETs
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Institut de Microélectronique, Electromagnétisme et Photonique - Laboratoire d'Hyperfréquences et Caractérisation (IMEP-LAHC) ; Université de Savoie - Université Joseph Fourier - Grenoble I - Institut National Polytechnique de Grenoble (INPG) - CNRS, Xu, Y., Ghibaudo, G., Balestra, F., Chroboczek, J., Gwoziecki, R., Chartier, I., Coppard, R., Institut de Microélectronique, Electromagnétisme et Photonique - Laboratoire d'Hyperfréquences et Caractérisation (IMEP-LAHC) ; Université de Savoie - Université Joseph Fourier - Grenoble I - Institut National Polytechnique de Grenoble (INPG) - CNRS, Xu, Y., Ghibaudo, G., Balestra, F., Chroboczek, J., Gwoziecki, R., Chartier, I., and Coppard, R.
- Abstract
International audience
21. Human adenovirus 2 temperature-sensitive mutant 112 contains three mutations in the protein IIIa gene
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Chroboczek, J., primary, Viard, F., additional, and D'Halluin, J.-C., additional
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- 1986
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22. The penton base of human adenovirus type 3 has the RGD motif
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Cuzange, A., Chroboczek, J., and Jacrot, B.
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- 1994
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23. Synthesis, cellular localization, and quantification of penton-dodecahedron in serotype 3 adenovirus-infected cells
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Chroboczek, J [Institut de Biologie Structurale, 41, rue Horowitz, 38027 Grenoble (France)]
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- 2005
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24. Evaluation of the human type 3 adenoviral dodecahedron as a vector to target acute myeloid leukemia.
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Caulier B, Stofleth G, Hannani D, Guidetti M, Josserand V, Laurin D, Chroboczek J, Mossuz P, and Plantaz D
- Abstract
Intensive systemic chemotherapy is the gold standard of acute myeloid leukemia (AML) treatment and is associated with considerable off-target toxicities. Safer and targeted delivery systems are thus urgently needed. In this study, we evaluated a virus-like particle derived from the human type 3 adenovirus, called the adenoviral dodecahedron (Dd) to target AML cells. The vectorization of leukemic cells was proved very effective at nanomolar concentrations in a time- and dose-dependent manner, without vector toxicity. The internalization involved clathrin-mediated energy-dependent endocytosis and strongly correlated with the expression of α
V β3 integrin. The treatment of healthy donor peripheral blood mononuclear cells showed a preferential targeting of monocytes compared to lymphocytes and granulocytes. Similarly, monocytes but also AML blasts were the best-vectorized populations in patients while acute lymphoid leukemia blasts were less efficiently targeted. Importantly, AML leukemic stem cells (LSCs) could be addressed. Finally, Dd reached peripheral monocytes and bone marrow hematopoietic stem and progenitor cells following intravenous injection in mice, without excessive spreading in other organs. These findings reveal Dd as a promising myeloid vector especially for therapeutic purposes in AML blasts, LSCs, and progenitor cells., Competing Interests: The authors declare no competing interests., (© 2020 The Authors.)- Published
- 2020
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25. Cholesterol and phosphatidylserine are engaged in adenoviral dodecahedron endocytosis.
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Jedynak M, Worch R, Podsiadła-Białoskórska M, Chroboczek J, and Szołajska E
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- Annexin A5 metabolism, HeLa Cells, Humans, Membrane Lipids metabolism, Surface Plasmon Resonance, Adenoviruses, Human metabolism, Cholesterol metabolism, Endocytosis, Phosphatidylserines metabolism
- Abstract
Adenoviral dodecahedron is a virus-like particle composed of twelve penton base proteins, derived from the capsid of human adenovirus type 3. Due to the high cell penetration capacity, it was used as a vector for protein, peptide and drug delivery. Two receptors are known to be involved in the endocytic dodecahedron uptake, namely αv integrins and heparan sulfate proteoglycans. Since it has been observed, that dodecahedron efficiently penetrates a wide range of cancer cells, it suggests that other cellular compounds may play a role in the particle endocytosis. To shed some light onto the interactions with membrane lipids and their potential role in dodecahedron entry, we performed a series of experiments including biochemical assays, fluorescence confocal imaging of giant unilamellar vesicles and surface plasmon resonance, which indicated specific preference of the particle to anionic phosphatidylserine. Experiments performed on cholesterol-depleted epithelial cells showed that cholesterol is essential in the endocytic uptake, however a direct interaction was not observed. We believe that the results will allow to better understand the role of lipids in dodecahedron entry and to design more specific dodecahedron-based vectors for drug delivery to cancer cells., (Copyright © 2018. Published by Elsevier B.V.)
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- 2018
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26. Virus-like particles as drug delivery vectors.
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Zdanowicz M and Chroboczek J
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- Animals, Humans, Drug Delivery Systems, Virion
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Virus-like particles (VLPs) assemble spontaneously during the viral cycle or in heterologous systems during expression of viral structural protein. Depending on the complexity of the VLPs, they can be obtained by expression in prokaryotic or eukaryotic expression system from the suitable recombinant vectors, or formed in cell-free conditions. Moreover, they can be built from proteins of a single virus, or can present the proteins or peptides derived from a virus or cell on a platform derived from any other single virus, thus forming chimeric VLPs. VLPs are best known for their immunogenic properties, but the versatility of VLPs allows a wide variety of applications. They are lately in the centre of investigations in vaccinology, drug delivery and gene therapy. This review focuses on utilization of VLPs for drug delivery.
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- 2016
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27. Preface. Influenza virus.
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Chroboczek J, Sirko A, and Zagórski-Ostoja W
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- Animals, Humans, Influenza A virus, Influenza, Human virology, Orthomyxoviridae Infections
- Published
- 2014
28. Virus-like particles as vaccine.
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Chroboczek J, Szurgot I, and Szolajska E
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- Epitopes, B-Lymphocyte immunology, Epitopes, T-Lymphocyte immunology, Humans, Influenza A virus genetics, Influenza A virus ultrastructure, Nanostructures, Vaccination, Influenza A virus immunology, Influenza, Human prevention & control, Vaccines, Virus-Like Particle immunology
- Abstract
This review presents data on commercial and experimental virus-like particle (VLP) vaccines, including description of VLP vaccines against influenza. Virus-like particles are multimeric, sometimes multiprotein nanostructures assembled from viral structural proteins and are devoid of any genetic material. VLPs present repetitive high-density displays of viral surface proteins. Importantly, they contain functional viral proteins responsible for cell penetration by the virus, ensuring efficient cell entry and thus tissue-specific targeting, determined by the origin of the virus. The foremost application of VLPs is in vaccinology, where they provide delivery systems that combine good safety profiles with strong immunogenicity and constitute a safe alternative to inactivated infectious viruses. These stable and versatile nanoparticles display excellent adjuvant properties capable of inducing innate and cognate immune responses. They present both, high-density B-cell epitopes, for antibody production and intracellular T-cell epitopes, thus inducing, respectively, potent humoral and cellular immune responses. Uptake of VLPs by antigen-presenting cells leads to efficient immune responses resulting in control of pathogenic microorganisms.
- Published
- 2014
29. Towards a novel influenza vaccine: engineering of hemagglutinin on a platform of adenovirus dodecahedron.
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Naskalska A, Szolajska E, Andreev I, Podsiadla M, and Chroboczek J
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- Cells, Cultured, Cloning, Molecular, Endosomal Sorting Complexes Required for Transport genetics, Hemadsorption Inhibition Tests, Hemagglutinins metabolism, Influenza Vaccines metabolism, Protein Structure, Tertiary, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins metabolism, Saccharomyces cerevisiae Proteins genetics, Ubiquitin-Protein Ligase Complexes genetics, Viral Proteins genetics, Adenoviridae genetics, Hemagglutinins genetics, Influenza Vaccines genetics, Protein Engineering methods, Viral Proteins metabolism
- Abstract
Background: The production process for the current influenza vaccine takes about 6 months and its antigenic composition must be modified annually. In the attempt towards developing influenza vaccine production that would be faster, safer and cheaper we engineered an influenza vaccine in which multiple copies of hemagglutinin (HA) would be delivered by a vector, adenovirus dodecahedron (Ad Dd). Dd is a virus-like particle, formed by assembly of twelve copies of pentameric penton base (Pb) proteins responsible for virus penetration. In order to attach HA to the vector, an adaptor containing WW domains was used. The WW domain is a linear peptide fragment identified as a partner of proline-proline-x-tyrosine (PPxY) motif present at the N-terminal extremity of the Pb protein, which is a building block of Dd. That tandem of three WW domains in fusion with the protein of interest enables interaction with Dd and efficient translocation to the cytoplasm of cells in culture., Results: Since HA is an oligomeric protein with complicated processing, we prepared six different constructs of HA (A/swan/Poland/467/2006(H5N1)) in fusion with the WW adaptor. Herein we report baculovirus expression and functional analysis of six HA-WW variants. The best behaving variant was successfully delivered into human cells in vitro., Conclusions: Engineering of a soluble complex of HA with Dd, a virus-like particle that serves as a vector, an adjuvant and as a multivalent presentation platform, is an important step toward a novel influenza vaccine.
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- 2013
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30. Three letters on Copernicus published by Joannes Broscius in 1618.
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Chroboczek J
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- 2013
31. Amitozyn impairs chromosome segregation and induces apoptosis via mitotic checkpoint activation.
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Hermant B, Gudrun A, Potopalsky AI, Chroboczek J, and Tcherniuk SO
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- Benzophenanthridines chemistry, Cell Line, Tumor, Cell Proliferation drug effects, DNA Breaks, Double-Stranded drug effects, HeLa Cells, Humans, Organothiophosphorus Compounds chemistry, Phenotype, Protein Multimerization drug effects, Retinoblastoma Protein metabolism, Signal Transduction drug effects, Tubulin chemistry, Tubulin metabolism, Antineoplastic Agents, Phytogenic pharmacology, Apoptosis drug effects, Benzophenanthridines pharmacology, Chromosome Segregation drug effects, M Phase Cell Cycle Checkpoints drug effects, Organothiophosphorus Compounds pharmacology
- Abstract
Amitozyn (Am) is a semi-synthetic drug produced by the alkylation of major celandine (Chelidonium majus L.) alkaloids with the organophosphorous compound N,N'N'-triethylenethiophosphoramide (ThioTEPA). We show here that the treatment of living cells with Am reversibly perturbs the microtubule cytoskeleton, provoking a dose-dependent cell arrest in the M phase. Am changed the dynamics of tubulin polymerization in vitro, promoted the appearance of aberrant mitotic phenotypes in HeLa cells and induced apoptosis by the activation of caspase-9, caspase-3 and PARP, without inducing DNA breaks. Am treatment of HeLa cells induced changes in the phosphorylation of the growth suppressor pRb that coincided with maximum mitotic index. The dose-dependent and reversible anti-proliferative effect of Am was observed in several transformed cell lines. Importantly, the drug was also efficient against multidrug-resistant, paclitaxel-resistant or p53-deficient cells. Our results thus open the way to further pre-clinical evaluation of Am.
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- 2013
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32. The structural basis for the integrity of adenovirus Ad3 dodecahedron.
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Szolajska E, Burmeister WP, Zochowska M, Nerlo B, Andreev I, Schoehn G, Andrieu JP, Fender P, Naskalska A, Zubieta C, Cusack S, and Chroboczek J
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- Amino Acid Sequence, Capsid Proteins genetics, Crystallography, X-Ray, Humans, Molecular Sequence Data, Mutagenesis, Site-Directed, Protein Structure, Secondary, Sequence Homology, Amino Acid, Adenoviruses, Human metabolism, Capsid Proteins chemistry, Capsid Proteins metabolism
- Abstract
During the viral life cycle adenoviruses produce excess capsid proteins. Human adenovirus serotype 3 (Ad3) synthesizes predominantly an excess of free pentons, the complexes of pentameric penton base and trimeric fiber proteins, which are responsible for virus penetration. In infected cells Ad3 pentons spontaneously assemble into dodecahedral virus-like nano-particles containing twelve pentons. They also form in insect cells during expression in the baculovirus system. Similarly, in the absence of fiber protein dodecahedric particles built of 12 penton base pentamers can be produced. Both kinds of dodecahedra show remarkable efficiency of intracellular penetration and can be engineered to deliver several millions of foreign cargo molecules to a single target cell. For this reason, they are of great interest as a delivery vector. In order to successfully manipulate this potential vector for drug and/or gene delivery, an understanding of the molecular basis of vector assembly and integrity is critical. Crystallographic data in conjunction with site-directed mutagenesis and biochemical analysis provide a model for the molecular determinants of dodecamer particle assembly and the requirements for stability. The 3.8 Å crystal structure of Ad3 penton base dodecamer (Dd) shows that the dodecahedric structure is stabilized by strand-swapping between neighboring penton base molecules. Such N-terminal strand-swapping does not occur for Dd of Ad2, a serotype which does not form Dd under physiological conditions. This unique stabilization of the Ad3 dodecamer is controlled by residues 59-61 located at the site of strand switching, the residues involved in putative salt bridges between pentamers and by the disordered N-terminus (residues 1-47), as confirmed by site directed mutagenesis and biochemical analysis of mutant and wild type protein. We also provide evidence that the distal N-terminal residues are externally exposed and available for attaching cargo.
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- 2012
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33. Certain protein transducing agents convert translocated proteins into cell killers.
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Tcherniuk S, Fiser AL, Derouazi M, Toussaint B, Wang Y, Wojtal I, Kondo E, Szolajska E, and Chroboczek J
- Subjects
- Amino Acid Sequence, Antineoplastic Agents metabolism, Antineoplastic Agents pharmacology, Cell Death, Cell Proliferation, Cell Survival, Culture Media, Serum-Free, Drug Delivery Systems methods, Drug Delivery Systems standards, Escherichia coli genetics, Escherichia coli metabolism, Green Fluorescent Proteins metabolism, HeLa Cells, Humans, L-Lactate Dehydrogenase metabolism, Microscopy, Fluorescence, Molecular Sequence Data, Peptides metabolism, Plasmids genetics, Plasmids metabolism, Time Factors, Transfection, Viral Proteins genetics, Peptides pharmacology, Protein Transport, Viral Proteins pharmacology
- Abstract
The majority of proteins are unable to translocate into the cell interior. Hence for peptide- and protein-based therapeutics a direct intracytoplasmic delivery with the aid of transducing agents is an attractive approach. We wanted to deliver to the cell interior a putatively cytotoxic protein VPg. Protein transduction was achieved in vitro with three different commercial products. However, in our hands, delivery of various control proteins without known deleterious effects, as well as of protein VPg, always induced cell death. Finally, we used a novel transducing peptide Wr-T, which was not toxic to cultured cells, even in a quite large range of concentrations. Most importantly, control protein delivered to cells in culture did not display any toxicity while VPg protein exerted a strong cytotoxic effect. These data show that results obtained with cell-penetrating agents should be interpreted with caution.
- Published
- 2012
34. Faithful chaperones.
- Author
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Szolajska E and Chroboczek J
- Subjects
- Animals, Humans, Molecular Chaperones physiology, Protein Folding, Proteins physiology
- Abstract
This review describes the properties of some rare eukaryotic chaperones that each assist in the folding of only one target protein. In particular, we describe (1) the tubulin cofactors, (2) p47, which assists in the folding of collagen, (3) α-hemoglobin stabilizing protein (AHSP), (4) the adenovirus L4-100 K protein, which is a chaperone of the major structural viral protein, hexon, and (5) HYPK, the huntingtin-interacting protein. These various-sized proteins (102-1,190 amino acids long) are all involved in the folding of oligomeric polypeptides but are otherwise functionally unique, as they each assist only one particular client. This raises a question regarding the biosynthetic cost of the high-level production of such chaperones. As the clients of faithful chaperones are all abundant proteins that are essential cellular or viral components, it is conceivable that this necessary metabolic expenditure withstood evolutionary pressure to minimize biosynthetic costs. Nevertheless, the complexity of the folding pathways in which these chaperones are involved results in error-prone processes. Several human disorders associated with these chaperones are discussed.
- Published
- 2011
- Full Text
- View/download PDF
35. Analysis of potyvirus terminal protein VPg-transgenic Arabidopsis thaliana plants.
- Author
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Wojtal I, Piontek P, Grzela R, Jarmołowski A, Zagórski W, and Chroboczek J
- Subjects
- Arabidopsis growth & development, Arabidopsis immunology, Arabidopsis virology, Plant Diseases genetics, Plant Diseases virology, Plants, Genetically Modified genetics, Potyvirus genetics, Potyvirus pathogenicity, RNA, Messenger analysis, Ribonucleoproteins metabolism, Viral Nonstructural Proteins metabolism, Arabidopsis genetics, Ribonucleoproteins genetics, Viral Nonstructural Proteins genetics
- Abstract
Virus-coded VPg protein of Potato virus Y (PVY) does not have homologs apart from other VPgs. Since VPg is indispensable for the potyvirus life cycle, it appeared a good candidate for eliciting pathogen-derived resistance to PVY. Following agroinfection used to obtain PVY VPg-transgenic Arabidopsis thaliana plants, only few transgenic seeds were recovered giving rise to six transgenic plants that contained the VPg gene with the correct sequence. They generated VPg mRNA, but VPg protein was not detected. Some plants were immune to PVY infection suggesting post-transcriptional gene silencing. However, the likely PVY VPg toxicity exerted at an early stage of transformed seeds development precludes its use for engineering pathogen-derived resistance.
- Published
- 2011
36. Adenovirus dodecahedron, as a drug delivery vector.
- Author
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Zochowska M, Paca A, Schoehn G, Andrieu JP, Chroboczek J, Dublet B, and Szolajska E
- Subjects
- Adenoviridae chemistry, Adenoviridae genetics, Bleomycin analogs & derivatives, Bleomycin chemistry, Electrophoresis, Polyacrylamide Gel, Flow Cytometry, Genetic Vectors chemistry, Genetic Vectors genetics, HeLa Cells, Humans, Microscopy, Atomic Force, Microscopy, Confocal, Microscopy, Fluorescence, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins metabolism, Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization, Viral Proteins chemistry, Viral Proteins genetics, Adenoviridae metabolism, Drug Delivery Systems methods, Genetic Vectors metabolism, Viral Proteins metabolism
- Abstract
Background: Bleomycin (BLM) is an anticancer antibiotic used in many cancer regimens. Its utility is limited by systemic toxicity and dose-dependent pneumonitis able to progress to lung fibrosis. The latter can affect up to nearly 50% of the total patient population, out of which 3% will die. We propose to improve BLM delivery by tethering it to an efficient delivery vector. Adenovirus (Ad) dodecahedron base (DB) is a particulate vector composed of 12 copies of a pentameric viral protein responsible for virus penetration. The vector efficiently penetrates the plasma membrane, is liberated in the cytoplasm and has a propensity to concentrate around the nucleus; up to 300000 particles can be observed in one cell in vitro., Principal Findings: Dodecahedron (Dd) structure is preserved at up to about 50 degrees C at pH 7-8 and during dialysis, freezing and drying in the speed-vac in the presence of 150 mM ammonium sulfate, as well as during lyophilization in the presence of cryoprotectants. The vector is also stable in human serum for 2 h at 37 degrees C. We prepared a Dd-BLM conjugate which upon penetration induced death of transformed cells. Similarly to free bleomycin, Dd-BLM caused dsDNA breaks. Significantly, effective cytotoxic concentration of BLM delivered with Dd was 100 times lower than that of free bleomycin., Conclusions/significance: Stability studies show that Dds can be conveniently stored and transported, and can potentially be used for therapeutic purposes under various climates. Successful BLM delivery by Ad Dds demonstrates that the use of virus like particle (VLP) results in significantly improved drug bioavailability. These experiments open new vistas for delivery of non-permeant labile drugs.
- Published
- 2009
- Full Text
- View/download PDF
37. Virulence factor of potato virus Y, genome-attached terminal protein VPg, is a highly disordered protein.
- Author
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Grzela R, Szolajska E, Ebel C, Madern D, Favier A, Wojtal I, Zagorski W, and Chroboczek J
- Subjects
- Amino Acid Sequence, Circular Dichroism, Dimerization, Electrophoresis, Polyacrylamide Gel, Magnetic Resonance Spectroscopy, Molecular Sequence Data, Potyvirus genetics, Temperature, Viral Proteins chemistry, Viral Proteins genetics, Virulence Factors chemistry, Virulence Factors genetics, Genome, Viral, Potyvirus metabolism, Viral Proteins metabolism, Virulence Factors metabolism
- Abstract
Potato virus Y (PVY) is a common potyvirus of agricultural importance, belonging to the picornavirus superfamily of RNA plus-stranded viruses. A covalently linked virus-encoded protein VPg required for virus infectivity is situated at the 5' end of potyvirus RNA. VPg seems to be involved in multiple interactions, both with other viral products and host proteins. VPgs of potyviruses have no known homologs, and there is no atomic structure available. To understand the molecular basis of VPg multifunctionality, we have analyzed structural features of VPg from PVY using structure prediction programs, functional assays, and biochemical and biophysical analyses. Structure predictions suggest that VPg exists in a natively unfolded conformation. In contrast with ordered proteins, PVY VPg is not denatured by elevated temperatures, has sedimentation values incompatible with a compact globular form, and shows a CD spectrum of a highly disordered protein, and HET-HETSOFAST NMR analysis suggests the presence of large unstructured regions. Although VPg has a propensity to form dimers, no functional differences were seen between the monomer and dimer. These data strongly suggest that the VPg of PVY should be classified among intrinsically disordered proteins. Intrinsic disorder lies at the basis of VPg multifunctionality, which is necessary for virus survival in the host.
- Published
- 2008
- Full Text
- View/download PDF
38. Engineered resistance against proteinases.
- Author
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Milner M, Chroboczek J, and Zagorski-Ostoja W
- Subjects
- Animals, Endopeptidase K antagonists & inhibitors, Endopeptidase K metabolism, Insect Proteins genetics, Insect Proteins ultrastructure, Microscopy, Electron, Scanning, Plant Proteins genetics, Plant Proteins ultrastructure, Protein Binding, Recombinant Fusion Proteins genetics, Recombinant Fusion Proteins pharmacology, Serine Proteinase Inhibitors pharmacology, Trypsin metabolism, Insect Proteins metabolism, Plant Proteins metabolism, Recombinant Fusion Proteins metabolism, Serine Proteinase Inhibitors metabolism
- Abstract
Exogenous proteinase inhibitors are valuable and economically interesting protective biotechnological tools. We examined whether small proteinase inhibitors when fused to a selected target protein can protect the target from proteolytic degradation without simultaneously affecting the function and activity of the target domain. Two proteinase inhibitors were studied: a Kazal-type silk proteinase inhibitor (SPI2) from Galleria mellonella, and the Cucurbita maxima trypsin inhibitor I (CMTI I). Both inhibitors target serine proteinases, are small proteins with a compact structure stabilized by a network of disulfide bridges, and are expressed as free polypeptides in their natural surroundings. Four constructs were prepared: the gene for either of the inhibitors was ligated to the 5' end of the DNA encoding one or the other of two selected target proteins, the coat protein (CP) of Potato potyvirus Y or the Escherichia coli beta-glucuronidase (GUS). CMTI I fused to the target proteins strongly hampered their functions. Moreover, the inhibitory activity of CMTI I was retained only when it was fused to the CP. In contrast, when fused to SPI2, specific features and functions of both target proteins were retained and the inhibitory activity of SPI2 was fully preserved. Measuring proteolysis in the presence or absence of either inhibitor, we demonstrated that proteinase inhibitors can protect target proteins used either free or as a fusion domain. Interestingly, their inhibitory efficiency was superior to that of a commercial inhibitor of serine proteinases, AEBSF.
- Published
- 2007
39. Construction of tumor-specific toxins using ubiquitin fusion technique.
- Author
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Tcherniuk SO, Chroboczek J, and Balakirev MY
- Subjects
- Cell Line, Tumor, Cell Proliferation, Gene Expression Regulation, Neoplastic, Genetic Engineering, Genetic Vectors genetics, Humans, Male, Plant Proteins genetics, Plant Proteins metabolism, Prostatic Neoplasms genetics, Prostatic Neoplasms pathology, Recombinant Fusion Proteins genetics, Reticulocytes metabolism, Ribosome Inactivating Proteins, Type 1, Saponaria genetics, Saporins, Sensitivity and Specificity, Toxins, Biological genetics, Ubiquitin genetics, Prostatic Neoplasms therapy, Recombinant Fusion Proteins metabolism, Toxins, Biological metabolism, Ubiquitin metabolism
- Abstract
The use of cytotoxic agents to eliminate cancer cells is limited because of their nonselective toxicity and unwanted side effects. One of the strategies to overcome these limitations is to use latent prodrugs that become toxic in situ after being enzymatically activated in target cells. In this work we describe a method for producing tumor-specific toxins by using a ubiquitin fusion technique. The method is illustrated by the production of recombinant toxins by in-frame fusion of ubiquitin to saporin, a toxin from the plant Saponaria officinalis. Ubiquitin-fused toxins were rapidly degraded via the ubiquitin-proteasome system, significantly reducing their nonspecific toxicity. The insertion of the protease-cleavage sequence between ubiquitin and saporin led to the removal of ubiquitin by the protease and resulted in protease-dependent stabilization of the toxin. We engineered toxins that can be stabilized by specific proteases such as deubiquitinating enzymes and prostate-specific antigen (PSA). Both constructs were activated in vitro and in cultured cells by the appropriate enzyme. Processing by the protease resulted in a greater than 10-fold increase in the toxicity of these constructs. Importantly, the PSA-cleavable toxin was able to kill specifically the PSA-producing prostate cancer cells. The ubiquitin fusion technique is thus a versatile and reliable method for obtaining selective cytotoxic agents and can easily be adapted for different kinds of toxins and activating proteases.
- Published
- 2005
- Full Text
- View/download PDF
40. The structure of the human adenovirus 2 penton.
- Author
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Zubieta C, Schoehn G, Chroboczek J, and Cusack S
- Subjects
- Adenoviruses, Human classification, Adenoviruses, Human ultrastructure, Amino Acid Sequence, Base Sequence, Capsid Proteins ultrastructure, Crystallography, X-Ray, DNA, Viral genetics, Detergents, Humans, Microscopy, Electron, Models, Molecular, Molecular Sequence Data, Protein Conformation, Protein Structure, Quaternary, Sequence Homology, Amino Acid, Static Electricity, Adenoviruses, Human chemistry, Adenoviruses, Human genetics, Capsid Proteins chemistry, Capsid Proteins genetics
- Abstract
The adenovirus penton, a noncovalent complex of the pentameric penton base and trimeric fiber proteins, comprises the vertices of the adenovirus capsid and contains all necessary components for viral attachment and internalization. The 3.3 A resolution crystal structure of human adenovirus 2 (hAd2) penton base shows that the monomer has a basal jellyroll domain and a distal irregular domain formed by two long insertions, a similar topology to the adenovirus hexon. The Arg-Gly-Asp (RGD) motif, required for interactions with cellular integrins, occurs on a flexible surface loop. The complex of penton base with bound N-terminal fiber peptide, determined at 3.5 A resolution, shows that the universal fiber motif FNPVYPY binds at the interface of adjacent penton base monomers and results in a localized structural rearrangement in the insertion domain of the penton base. These results give insight into the structure and assembly of the adenovirus capsid and will be of use for gene-therapy applications.
- Published
- 2005
- Full Text
- View/download PDF
41. Crystal structure of human otubain 2.
- Author
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Nanao MH, Tcherniuk SO, Chroboczek J, Dideberg O, Dessen A, and Balakirev MY
- Subjects
- Amino Acid Sequence, Animals, Binding Sites, Crystallography, X-Ray, Cysteine Endopeptidases metabolism, Humans, Models, Molecular, Molecular Sequence Data, Neoplasm Proteins metabolism, Protein Folding, Sequence Alignment, Thiolester Hydrolases, Ubiquitin metabolism, Cysteine Endopeptidases chemistry, Neoplasm Proteins chemistry, Protein Structure, Tertiary
- Abstract
Ubiquitylation, the modification of cellular proteins by the covalent attachment of ubiquitin, is critical for diverse biological processes including cell cycle progression, signal transduction and stress response. This process can be reversed and regulated by a group of proteases called deubiquitylating enzymes (DUBs). Otubains are a recently identified family of DUBs that belong to the ovarian tumour (OTU) superfamily of proteins. Here, we report the first crystal structure of an OTU superfamily protein, otubain 2, at 2.1 A resolution and propose a model for otubain-ubiquitin binding on the basis of other DUB structures. Although otubain 2 is a member of the cysteine protease superfamily of folds, its crystal structure shows a novel fold for DUBs. Moreover, the active-site cleft is sterically occluded by a novel loop conformation resulting in an oxyanion hole, which consists uniquely of backbone amides, rather than the composite backbone/side-chain substructures seen in other DUBs and cysteine proteases. Furthermore, the residues that orient and stabilize the active-site histidine of otubain 2 are different from other cysteine proteases. This reorganization of the active-site topology provides a possible explanation for the low turnover and substrate specificity of the otubains.
- Published
- 2004
- Full Text
- View/download PDF
42. Poneratoxin, a neurotoxin from ant venom. Structure and expression in insect cells and construction of a bio-insecticide.
- Author
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Szolajska E, Poznanski J, Ferber ML, Michalik J, Gout E, Fender P, Bailly I, Dublet B, and Chroboczek J
- Subjects
- Animals, Ant Venoms genetics, Ant Venoms toxicity, Baculoviridae genetics, Cell Line, Circular Dichroism, Insect Proteins, Insecticides chemistry, Insecticides metabolism, Models, Molecular, Neuropeptides chemical synthesis, Neuropeptides chemistry, Neuropeptides toxicity, Neurotoxins genetics, Neurotoxins toxicity, Nuclear Magnetic Resonance, Biomolecular, Recombinant Proteins chemistry, Recombinant Proteins metabolism, Recombinant Proteins toxicity, Spodoptera cytology, Spodoptera metabolism, Ant Venoms chemistry, Ant Venoms metabolism, Neurotoxins chemistry, Neurotoxins metabolism
- Abstract
Poneratoxin is a small neuropeptide found in the venom of the ant Paraponera clavata. It is stored in the venom reservoir as an inactive 25-residue peptide. Here we describe both chemically synthesized poneratoxin and poneratoxin obtained by expression in insect cells. When expressed in insect cells, poneratoxin was observed attached to cell membranes. Both synthetic and recombinant ponerotoxins were soluble below pH 4.5. The structure of synthetic poneratoxin was characterized by circular dichroism and solved by nuclear magnetic resonance. In an environment imitating a lipid bilayer, at pH within the range of insect hemolymph, synthetic poneratoxin has a V shape, with two alpha-helices connected by a beta-turn. Insect larvae were paralyzed by injection of either of the purified toxins, with the recombinant one acting faster. The recombinant toxin-producing baculovirus reduced the average survival time of the insect host by 25 h compared with unmodified virus. Mass spectrometry analysis showed that the recombinant toxin has an N-terminal 21-residue extension, possibly improving its stability and/or stabilizing the membrane-bound state. The potential use of poneratoxin for the construction of biological insecticide is discussed.
- Published
- 2004
- Full Text
- View/download PDF
43. Unique physicochemical properties of human enteric Ad41 responsible for its survival and replication in the gastrointestinal tract.
- Author
-
Favier AL, Burmeister WP, and Chroboczek J
- Subjects
- Adenoviruses, Human growth & development, Cell Line, Cells, Cultured, Gastrointestinal Tract metabolism, Humans, Hydrogen-Ion Concentration, Intestinal Mucosa metabolism, Intestinal Mucosa virology, Models, Molecular, Phospholipids metabolism, Static Electricity, Viral Proteins chemistry, Virus Replication, Adenoviruses, Human chemistry, Adenoviruses, Human metabolism, Gastrointestinal Tract virology, Lipid Metabolism, Viral Proteins metabolism
- Abstract
Human enteric adenovirus Ad41 is associated with children gastroenteritis. To infect gastrointestinal cells, the invading virus must be acid-stable and resistant to inactivation by bile salts and proteases. In addition, it has to cross the mucus barrier before it infects mucosa cells. We show that Ad41 infectivity is not diminished by acid exposure, a condition limiting the infectivity of the respiratory Ad. This feature can be attributed to a large extent to the global basic charge of enteric Ad virions and to the stability of Ad41 fiber, a viral protein mediating virus attachment. Upon exposure to pH shock, the respiratory Ad2 loses its ability to interact with lipids while enteric Ad41 still binds to the major phospholipids of gastric and intestine mucus. In addition, contrary to respiratory Ad, enteric Ad41 interacts with several sphingolipid components of plasma membranes. These results show that the molecular bases of the Ad41 enteric tropism stem from its particular physicochemical properties.
- Published
- 2004
- Full Text
- View/download PDF
44. Heparan sulfate proteoglycan mediates the selective attachment and internalization of serotype 3 human adenovirus dodecahedron.
- Author
-
Vivès RR, Lortat-Jacob H, Chroboczek J, and Fender P
- Subjects
- Adenoviruses, Human chemistry, Animals, Cell Line, Cricetinae, HeLa Cells, Humans, Virus Replication, Adenoviruses, Human metabolism, Antigens, Viral metabolism, Capsid Proteins metabolism, Heparan Sulfate Proteoglycans metabolism, Receptors, Virus metabolism
- Abstract
During adenovirus type 3 (Ad3) infection cycle, the penton (Pt) of the viral capsid, a noncovalent complex of fiber and penton base proteins, is produced in large excess and self-assembles to form a highly organized dodecahedral structure, termed dodecahedron (Dd). The physiological role of these particles is poorly understood, but we have recently reported that they can penetrate cells with high efficiency and thus may constitute an attractive tool for gene or protein delivery approaches. Surprisingly, Dd displayed the ability to enter cells non-permissive to Ad3, suggesting the existence of additional internalization modes. In this study, we show that Ad3 Dd binds to cell surface heparan sulfate (HS) through high affinity interaction with the penton base. Furthermore, binding to HS was found to be the prerequisite for a novel and Dd specific entry pathway that could not be used by Ad3. Overall, these data provide new insights in the possible role of Dd during viral infection and potential therapeutic applications.
- Published
- 2004
- Full Text
- View/download PDF
45. Otubains: a new family of cysteine proteases in the ubiquitin pathway.
- Author
-
Balakirev MY, Tcherniuk SO, Jaquinod M, and Chroboczek J
- Subjects
- Amino Acid Sequence, Binding Sites, Cell Extracts chemistry, Cysteine Endopeptidases chemistry, Cysteine Endopeptidases genetics, Endopeptidases metabolism, Enzyme Inhibitors pharmacology, Escherichia coli genetics, Escherichia coli metabolism, Female, HeLa Cells metabolism, Humans, Molecular Sequence Data, Ovarian Neoplasms metabolism, Ovarian Neoplasms pathology, Plasmids, Sequence Alignment, Transfection, Ubiquitin genetics, Ubiquitin-Specific Proteases, Ubiquitins pharmacology, Cysteine Endopeptidases metabolism, Ubiquitin metabolism, Ubiquitins analogs & derivatives
- Abstract
The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes. Protein ubiquitylation is a dynamic and reversible process; attached Ub can be removed by deubiquitylating enzymes (DUBs), a heterogeneous group of cysteine proteases that cleave proteins precisely at the Ub-protein bond. Two families of DUBs have been identified previously. Here, we describe new, highly specific Ub iso-peptidases, that have no sequence homology to known DUBs, but which belong to the OTU (ovarian tumour) superfamily of proteins. Two novel proteins were isolated from HeLa cells by affinity purification using the DUB-specific inhibitor, Ub aldehyde (Ubal). We have named these proteins otubain 1 and otubain 2, for OTU-domain Ubal-binding protein. Functional analysis of otubains shows that the OTU domain contains an active cysteine protease site.
- Published
- 2003
- Full Text
- View/download PDF
46. Binding of adenovirus capsid to dipalmitoyl phosphatidylcholine provides a novel pathway for virus entry.
- Author
-
Balakireva L, Schoehn G, Thouvenin E, and Chroboczek J
- Subjects
- Adenoviruses, Human genetics, Adenoviruses, Human metabolism, Capsid Proteins metabolism, HeLa Cells, Humans, Liposomes metabolism, Pulmonary Alveoli virology, Transfection, Tumor Cells, Cultured, Viral Proteins metabolism, 1,2-Dipalmitoylphosphatidylcholine metabolism, Adenoviruses, Human pathogenicity, Capsid metabolism
- Abstract
Adenovirus (Ad) is an airborne, nonenveloped virus infecting respiratory epithelium. To study the mechanism of Ad entry, we used alveolar adenocarcinoma A549 cells, which have retained the ability of alveolar epithelial type II cells to synthesize the major component of pulmonary surfactant, disaturated phosphatidylcholine. Stimulation of phosphatidylcholine secretion by calcium ionophore or phorbol ester augmented the susceptibility of these cells to Ad. Both Ad infection and recombinant-Ad-mediated transfection increased in the presence of dipalmitoyl phosphatidylcholine (DPPC) liposomes in culture medium. Importantly, in the presence of DPPC liposomes, virus penetrates the cells independently of virus-specific protein receptors. DPPC vesicles bind Ad and are efficiently incorporated by A549 lung cells, serving as a virus vehicle during Ad penetration. To identify the viral protein(s) mediating Ad binding, a flotation of liposomes preincubated with structural viral proteins was employed, showing that the only Ad protein bound to DPPC vesicles was a hexon. The hexon preserved its phospholipid-binding properties upon purification, confirming its involvement in virus binding to the phospholipid. Given that disaturated phosphatidylcholine not only covers the inner surface of alveoli in the lungs but also reenters alveolar epithelium during lung surfactant turnover, Ad binding to this phospholipid may provide a pathway for virus entry into alveolar epithelium in vivo.
- Published
- 2003
- Full Text
- View/download PDF
47. Deubiquitinating function of adenovirus proteinase.
- Author
-
Balakirev MY, Jaquinod M, Haas AL, and Chroboczek J
- Subjects
- Adenoviruses, Human pathogenicity, Amino Acid Sequence, Chromatography, Affinity, Cysteine Endopeptidases chemistry, HeLa Cells, Humans, Models, Molecular, Molecular Sequence Data, Protease Inhibitors pharmacology, Proteins metabolism, Substrate Specificity, Adenoviruses, Human enzymology, Cysteine Endopeptidases metabolism, Ubiquitins metabolism
- Abstract
The invasion strategy of many viruses involves the synthesis of viral gene products that mimic the functions of the cellular proteins and thus interfere with the key cellular processes. Here we show that adenovirus infection is accompanied by an increased ubiquitin-cleaving (deubiquitinating) activity in the host cells. Affinity chromatography on ubiquitin aldehyde (Ubal), which was designed to identify the deubiquitinating proteases, revealed the presence of adenovirus L3 23K proteinase (Avp) in the eluate from adenovirus-infected cells. This proteinase is known to be necessary for the processing of viral precursor proteins during virion maturation. We show here that in vivo Avp deubiquitinates a number of cellular proteins. Analysis of the substrate specificity of Avp in vitro demonstrated that the protein deubiquitination by this enzyme could be as efficient as proteolytic processing of viral proteins. The structural model of the Ubal-Avp interaction revealed some similarity between S1-S4 substrate binding sites of Avp and ubiquitin hydrolases. These results may reflect the acquisition of an advantageous property by adenovirus and may indicate the importance of ubiquitin pathways in viral infection.
- Published
- 2002
- Full Text
- View/download PDF
48. Structural studies of human enteric adenovirus type 41.
- Author
-
Favier AL, Schoehn G, Jaquinod M, Harsi C, and Chroboczek J
- Subjects
- Adenoviruses, Human growth & development, Amino Acid Sequence, Animals, HeLa Cells, Humans, Microscopy, Electron, Molecular Sequence Data, Rabbits, Viral Structural Proteins chemistry, Viral Structural Proteins isolation & purification, Virion chemistry, Adenoviruses, Human chemistry, Viral Structural Proteins analysis
- Abstract
Enteric adenoviruses of serotypes 40 and 41 possess some specific structural features, one of which is the presence on the virion of two fibers of different lengths and primary sequences. These viruses are notoriously difficult to grow under laboratory conditions. In this paper the successful growth and purification of Ad41 are presented in detail. Structural Ad41 proteins were analyzed by biochemical methods, mass spectrometry, and electron microscopy (EM), in order to identify and localize them on polyacrylamide denaturing gels and to assess the proportion of short and long fibers in the virion. Surprisingly, the three proteins composing virus short and long pentons did not totally enter the denaturing polyacrylamide gels, which is probably due in part to their high pI. The pentons were separately purified and their dimensions were estimated from EM data. The EM images suggest that there are the same amounts of short and long fibers in each virion.
- Published
- 2002
- Full Text
- View/download PDF
49. Adenovirus type 7 penton purification of soluble pentamers from Escherichia coli and development of an integrin-dependent gene delivery system.
- Author
-
Bal HP, Chroboczek J, Schoehn G, Ruigrok RW, and Dewhurst S
- Subjects
- Adenoviruses, Human genetics, Amino Acid Sequence, Capsid genetics, Capsid metabolism, Capsid ultrastructure, Cells, Cultured, Chaperonin 60 metabolism, Chromatography, Affinity, Epithelial Cells metabolism, Epithelial Cells virology, Escherichia coli genetics, Factor Xa metabolism, Glutathione Transferase genetics, Integrins metabolism, Kidney cytology, Microscopy, Electron, Molecular Sequence Data, Receptors, Virus metabolism, Receptors, Vitronectin metabolism, Recombinant Fusion Proteins isolation & purification, Recombinant Fusion Proteins metabolism, Transfection, Adenoviruses, Human chemistry, Capsid isolation & purification, Capsid Proteins, Genetic Therapy, Genetic Vectors genetics
- Abstract
Adenoviral gene therapy vectors suffer from the disadvantages of toxicity and immunogenicity associated with the expression of adenoviral genes from the vector backbone. We report here an alternative strategy for gene delivery that utilizes a single component of the adenoviral type 7 capsid, the penton base (Ad7PB). The Ad7PB gene was sequenced and its amino-acid composition was deduced from its nucleotide sequence. The penton was expressed in Escherichia coli as a soluble C-terminal fusion with glutathione S-transferase (GST-Ad7PB) and was purified by single-step affinity chromatography. Both GST-Ad7PB and cleaved (GST-free) Ad7PB retained the ability to fold into pentamers as observed by electron microscopy. GST-Ad7PB was able to bind a synthetic peptide (FK20) derived from the Ad type 7 fiber and retard DNA through a polylysine chain present at the C-terminus of this linker peptide. GST-Ad7PB was an effective cell transfecting agent when assayed on 293 cells. Transfection was not dependent upon the presence of lysosomotropic agents indicating efficient endosome escape capability. Excess of an RGD-containing peptide derived from Ad7PB was able to inhibit transfection indicating specific integrin-mediated uptake of the GST-Ad7PB-FK20-DNA complexes. We propose that Ad7 pentons can be developed into integrin-specific gene delivery agents.
- Published
- 2000
- Full Text
- View/download PDF
50. Lipoic acid-derived amphiphiles for redox-controlled DNA delivery.
- Author
-
Balakirev M, Schoehn G, and Chroboczek J
- Subjects
- Benzoxazoles metabolism, Biotransformation, DNA chemistry, DNA genetics, DNA, Viral administration & dosage, DNA, Viral chemistry, DNA, Viral genetics, DNA, Viral metabolism, Fatty Acids, Monounsaturated metabolism, Fluorescence, Gene Expression, Genes, Reporter, Glutathione metabolism, HeLa Cells, Humans, Liposomes chemistry, Microscopy, Electron, Molecular Conformation, NADP metabolism, Nuclear Localization Signals metabolism, Oxidation-Reduction, Plasmids administration & dosage, Plasmids chemistry, Plasmids genetics, Plasmids metabolism, Polymers chemistry, Polymers metabolism, Propidium metabolism, Quaternary Ammonium Compounds chemistry, Quaternary Ammonium Compounds metabolism, Quinolinium Compounds metabolism, Surface-Active Agents chemistry, Thioctic Acid analogs & derivatives, Thioctic Acid chemistry, Transgenes genetics, DNA administration & dosage, DNA metabolism, Liposomes metabolism, Surface-Active Agents metabolism, Thioctic Acid metabolism, Transfection methods
- Abstract
Background: Intracellular release of free DNA from the vector complex is one of the critical steps limiting the efficiency of non-viral gene delivery. The complex should be stable enough to prevent DNA degradation but it should be destabilized inside the cell to allow DNA release and transcription. Destabilization and degradation of synthetic vectors is also required to reduce their cytotoxicity and augment the life-time of transfected cells., Results: Here we describe new cationic amphiphiles made from the natural pro-vitamin, lipoic acid, that reversibly binds and releases DNA, depending on the redox state of the lipoate moieties. In the oxidized state these amphiphiles condense DNA into homogeneous spherical particles, which, upon reduction, swell into DNA toroids with subsequent release of free DNA. Complex reduction and DNA release can be induced by various thiols as well as enzymatically, by thioredoxin reductase. Transfection with amphiphile-DNA complexes in vitro shows a several fold increase of transgene expression compared with DOTAP, and can be further augmented by attachment of the nucleus-targeting peptide to the amphiphile. The increase of transfection efficiency results from GSH- and NAD(P)H-dependent complex reduction and release of free DNA inside the cells., Conclusions: The present work demonstrates the principle of a redox-controlled gene delivery system that uses the reversibility of thiol-disulfide exchange reaction. Our data suggest that the efficiency of synthetic vectors can be augmented by their controlled destabilization inside the cells. Being formed from the natural non-toxic compound lipoic acid, these cationic amphiphiles provide a new promising class of synthetic vectors for gene delivery.
- Published
- 2000
- Full Text
- View/download PDF
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