1. Cloning of a human ortholog (RPH3AL) of (RNO)Rph3al from a candidate 17p13.3 medulloblastoma tumor suppressor locus.
- Author
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Smith JS, Tachibana I, Allen C, Chiappa SA, Lee HK, McIver B, Jenkins RB, and Raffel C
- Subjects
- Adaptor Proteins, Signal Transducing, Amino Acid Sequence, Animals, Base Sequence, Cloning, Molecular, DNA Mutational Analysis, DNA, Neoplasm chemistry, DNA, Neoplasm genetics, Exons, Humans, Introns, Loss of Heterozygosity, Molecular Sequence Data, Rats, Sequence Analysis, DNA, Sequence Homology, Amino Acid, Vesicular Transport Proteins, Rabphilin-3A, Cerebellar Neoplasms genetics, Chromosomes, Human, Pair 17 genetics, GTP-Binding Proteins genetics, Genes, Tumor Suppressor, Medulloblastoma genetics, Nerve Tissue Proteins genetics, rab GTP-Binding Proteins
- Abstract
Allelic loss of 17p13.3 is observed in approximately 40% of medulloblastomas, suggesting the presence of a tumor suppressor gene in this region. Deletion mapping has defined a region of common loss flanking the telomeric marker D17S34, and a recent report delineated a 9-kb homozygous deletion within the D17S34 locus in one such tumor. Using cDNA selection, we have identified a transcript spanning this deletion, designated (HSA)RPH3AL (rabphillin-3A-like), based on its 77% overall amino acid identity with a recently cloned rat gene, (RNO)Rph3al (originally termed Noc2), a gene putatively involved in regulated endocrine exocytosis through its interactions with the cytoskeleton. We determined the exon-intron boundaries of RPH3AL and screened the coding region for mutations by direct sequencing in DNA extracted from 33 tumor samples with allelic loss of 17p13, including 10 medulloblastoma, 14 follicular thyroid cancer (FTC), and 9 ovarian cancer specimens. No mutations were identified. Thus, despite its location in a homozygously deleted 17p13.3 locus, it is unlikely that RPH3AL is a gene involved in the oncogenesis of medulloblastoma, FTC, or ovarian cancer., (Copyright 1999 Academic Press.)
- Published
- 1999
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