17 results on '"Cesar E. Ramirez"'
Search Results
2. Epoxidation of juvenile hormone was a key innovation improving insect reproductive fitness
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Francisco Fernandez-Lima, Marcela Nouzova, Marnie Ruiz, Marten J. Edwards, Matthew DeGennaro, Cesar E. Ramirez, Maria Areiza, René Feyereisen, Fernando G. Noriega, Veronika Michalkova, and Marek Jindra
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Male ,medicine.medical_specialty ,Methyltransferase ,media_common.quotation_subject ,Insect ,Biology ,Evolution, Molecular ,Sexual Behavior, Animal ,Aedes ,Internal medicine ,medicine ,Animals ,Metamorphosis ,media_common ,Larva ,Multidisciplinary ,Reproductive success ,Reproduction ,fungi ,Metamorphosis, Biological ,Biological Sciences ,Juvenile Hormones ,Endocrinology ,Juvenile hormone ,Fatty Acids, Unsaturated ,Female ,Genetic Fitness ,Corpus allatum ,Sesquiterpenes ,Hormone - Abstract
Methyl farnesoate (MF) plays hormonal regulatory roles in crustaceans. An epoxidated form of MF, known as juvenile hormone (JH), controls metamorphosis and stimulates reproduction in insects. To address the evolutionary significance of MF epoxidation, we generated mosquitoes completely lacking either of the two enzymes that catalyze the last steps of MF/JH biosynthesis and epoxidation, respectively: the JH acid methyltransferase (JHAMT) and the P450 epoxidase CYP15 (EPOX). jhamt(−/−) larvae lacking both MF and JH died at the onset of metamorphosis. Strikingly, epox(−/−) mutants, which synthesized MF but no JH, completed the entire life cycle. While epox(−/−) adults were fertile, the reproductive performance of both sexes was dramatically reduced. Our results suggest that although MF can substitute for the absence of JH in mosquitoes, it is with a significant fitness cost. We propose that MF can fulfill most roles of JH, but its epoxidation to JH was a key innovation providing insects with a reproductive advantage.
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- 2021
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3. Three dimensional secondary ion mass spectrometry imaging (3D-SIMS) of Aedes aegypti ovarian follicles
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Michalkova, Fernando G. Noriega, Francisco Fl, Cesar E. Ramirez, Marcela Nouzova, and Anthony Castellanos
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biology ,Chemistry ,Ovary ,Aedes aegypti ,Mass spectrometry ,Oocyte ,biology.organism_classification ,Article ,Analytical Chemistry ,Cell biology ,Secondary ion mass spectrometry ,Follicle ,medicine.anatomical_structure ,Follicular phase ,medicine ,Ovarian follicle ,Spectroscopy - Abstract
The mobilization of nutrient reserves into the ovaries of Aedes aegypti mosquitoes after sugar-feeding plays a vital role in the female’s reproductive maturation. In the present work, three-dimensional secondary ion mass spectrometry imaging (3D-SIMS) was used to generate ultrahigh spatial resolution (~1 μm) chemical maps and study the composition and spatial distribution of lipids at the single ovarian follicle level (~100 μm in size). 3D-Mass Spectrometry Imaging (3D-MSI) allowed the identification of cellular types in the follicle (oocyte, nurse and follicular cells) using endogenous markers, and revealed that most of the triacyglycerides (TGs) were compartmentalized in the oocyte region. By comparing follicles from water-fed and sugar-fed females (n=2), 3D-MSI-Time of Flight-SIMS showed that TGs were more abundant in ovarian follicles of sugar-fed females; despite relative sample reproducibility per feeding condition, more biological replicates will better support the trends observed. While the current 3D-MSI-TOF-SIMS does not permit MS/MS analysis of the lipid species, complementary LC-MS/MS analysis of the ovarian follicles aided tentative lipid assignments of the SIMS data. The combination of these MS approaches is giving us a first glimpse of the distribution of functionally relevant ovarian lipid molecules at the cellular level. These new tools can be used to investigate the roles of different lipids on follicle fitness and overall mosquito reproductive output.
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- 2019
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4. The juvenile hormone described in Rhodnius prolixus by Wigglesworth is juvenile hormone III skipped bisepoxide
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Fernando G. Noriega, María Eugenia Alzugaray, Cesar E. Ramirez, María José Villalobos-Sambucaro, Francisco Fernandez-Lima, Marcela Nouzova, and Jorge Rafael Ronderos
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Nymph ,0301 basic medicine ,METAMORPHOSIS ,animal structures ,Physiology ,media_common.quotation_subject ,Rhodnius ,CHAGAS ,lcsh:Medicine ,Molting ,Molting cycle ,Article ,purl.org/becyt/ford/1 [https] ,03 medical and health sciences ,0302 clinical medicine ,Corpora Allata ,Hemolymph ,Ciencias Naturales ,Animals ,Metamorphosis ,purl.org/becyt/ford/1.6 [https] ,lcsh:Science ,Rhodnius prolixus ,media_common ,JUVENILE HORMONES ,Multidisciplinary ,biology ,lcsh:R ,fungi ,Metamorphosis, Biological ,Pupa ,Hormonas ,biology.organism_classification ,030104 developmental biology ,Biochemistry ,Ecdysis ,Juvenile hormone ,Epoxy Compounds ,Instar ,lcsh:Q ,Female ,Corpus allatum ,Sesquiterpenes ,Zoology ,030217 neurology & neurosurgery - Abstract
Juvenile hormones (JHs) are sesquiterpenoids synthesized by the corpora allata (CA). They play critical roles during insect development and reproduction. The first JH was described in 1934 as a "metamorphosis inhibitory hormone" in Rhodnius prolixus by Sir Vincent B. Wigglesworth. Remarkably, in spite of the importance of R. prolixus as vectors of Chagas disease and model organisms in insect physiology, the original JH that Wigglesworth described for the kissing-bug R. prolixus remained unidentified. We employed liquid chromatography mass spectrometry to search for the JH homologs present in the hemolymph of fourth instar nymphs of R. prolixus. Wigglesworth's original JH is the JH III skipped bisepoxide (JHSB3), a homolog identified in other heteropteran species. Changes in the titer of JHSB3 were studied during the 10-day long molting cycle of 4th instar nymph, between a blood meal and the ecdysis to 5th instar. In addition we measured the changes of mRNA levels in the CA for the 13 enzymes of the JH biosynthetic pathway during the molting cycle of 4th instar. Almost 90 years after the first descriptions of the role of JH in insects, this study finally reveals that the specific JH homolog responsible for Wigglesworth's original observations is JHSB3., Facultad de Ciencias Naturales y Museo, Consejo Nacional de Investigaciones Científicas y Técnicas
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- 2020
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5. Objective Measurement of Carcinogens Among Dominican Republic Firefighters Using Silicone-Based Wristbands
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Marija Miric, Katerina M. Santiago, Alberto J. Caban-Martinez, Geovanny Rivera, Cesar E. Ramirez, Sapna K. Deo, Eddy Perez-Then, Jeramy Baum, Sylvia Daunert, Natasha Schaefer Solle, Umer Bakali, Erin Kobetz, and Paola Louzado Feliciano
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Cancer Research ,business.industry ,Physical hazard ,Objective measurement ,Toxic chemical ,chemistry.chemical_compound ,Silicone ,Oncology ,chemistry ,Environmental health ,Workforce ,Incident response ,Medicine ,business - Abstract
PURPOSE Firefighters around the world are exposed to physical hazards and toxic chemical agents during fire incident response. Occupational epidemiologic studies of the firefighter workforce have documented an excess cancer risk for brain, digestive, genitourinary, and lymphohematopoietic organs compared with the general population. Despite the elevated cancer risk, little is known about what specific types of carcinogenic chemicals first responders encounter during a typical work shift, particularly in low-resources settings, like the Dominican Republic. This pilot study characterizes objective measurements of carcinogenic exposure using passive sampling silicone-based wristbands among Dominican firefighters. METHODS Firefighters from a metropolitan fire service in the Dominican Republic were asked to wear a silicone-based wristband during one typical 24-hour shift. A pre- and postshift survey was administered to the firefighter to assess their self-reported sociodemographic, employment, and work shift characteristics. Wristbands were collected after their 24-hour shift and processed for the type and quantity of polycyclic aromatic hydrocarbons (PAHs), a family of known carcinogenic compounds, to which firefighters were exposed. RESULTS Among 15 firefighters who wore a wristband during their 24-hour shift, 73.3% responded to a fire with an average of 3.7 calls during the shift. Fire incident responses included structural fires (54.5%), outside and other fires (36.4%), and vehicle fires (9.1%). Total PAH exposure was significantly higher among Dominican firefighters who responded to a fire compared with firefighters with no fire during their shift (261 parts per billion [ppb] v 117 ppb, respectively; P = .003). Among the 19 PAHs quantified, low-molecular-weight phenanthrene was present in the highest concentration (32 ppb) among firefighters not responding to fires. CONCLUSION Passive objective sampling of PAHs using silicone-based wristbands among Dominican firefighters showed direct exposure to carcinogenic compounds during a typical 24-hour firefighter shift. Firefighters not attending a fire had lower levels of PAHs, suggesting carcinogenic contaminants are present at the fire station.
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- 2020
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6. Juvenile hormone controls ovarian development in female Anopheles albimanus mosquitoes
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Veronika Michalkova, Francisco Fernandez-Lima, Marcela Nouzova, Victor Cardoso-Jaime, Cesar E. Ramirez, Fernando G. Noriega, and Salvador Hernández-Martínez
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0301 basic medicine ,media_common.quotation_subject ,lcsh:Medicine ,Physiology ,Culicinae ,Aedes aegypti ,Article ,03 medical and health sciences ,0302 clinical medicine ,Corpora Allata ,Ovarian Follicle ,Anopheles albimanus ,Hemolymph ,Anopheles ,Reproductive biology ,Animals ,lcsh:Science ,media_common ,Multidisciplinary ,biology ,Reproduction ,lcsh:R ,biology.organism_classification ,3. Good health ,Juvenile Hormones ,030104 developmental biology ,Juvenile hormone ,Female ,lcsh:Q ,Corpus allatum ,030217 neurology & neurosurgery - Abstract
Anophelinae mosquitoes are vectors of human malaria, a disease that infects hundreds of millions of people and causes almost 600,000 fatalities annually. Despite their medical importance, laboratory studies on key aspects of Anophelinae reproductive biology have been limited, and in particular, relatively little is known about the role of juvenile hormone (JH) in the control of female reproduction. The study presented here attempts to fill a gap of knowledge in our understanding of the JH control of ovarian development in female Anophelinae mosquitoes, using Anopheles albimanus as a model. Our studies revealed that JH controls the tempo of maturation of primary follicles in An. albimanus in a similar manner to that previously described in Aedes aegypti. At adult eclosion JH hemolymph titer was low, increased in 1-day old sugar-fed insects, and decreased in blood fed individuals. JH titers decreased if An. albimanus females were starved, and were reduced if insects emerged with low teneral reserves, precluding previtellogenic ovarian development. However, absolute hemolymph titers were lower than Ae. aegypti. Decapitation experiments suggested that if teneral reserves are sufficient, factors from the head activate JH synthesis by the corpora allata (CA) during the first 9–12 h after adult emergence. In conclusion, our studies support the hypothesis that JH controls previtellogenic ovarian development in female An. albimanus mosquitoes, in a similar manner that have been described in Culicinae.
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- 2019
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7. Abstract P3-07-15: Prosigna® subtype correlation is a strong predictor of response to neoadjuvant chemotherapy (NAC) in early breast cancer (EBC) study
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Wesley Buckingham, I. Rodrigo, Cesar E. Ramirez, Carl Schaper, Luis Vicioso, V. de Luque, Ester Villar, Emiliano Zamora de Alba, C González-Hermoso, Naeem Dowidar, M José Lozano, Nuria Ribelles, P. Sanchez Rovira, Begoña Jiménez-Rodríguez, R Chica Parrado, Ana Inés Fernández, Aleix Prat, M. Alvarez, Sean Ferree, Arthur Jeiranian, and Irene Zarcos
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0301 basic medicine ,Oncology ,Cancer Research ,Pathology ,medicine.medical_specialty ,Chemotherapy ,business.industry ,medicine.medical_treatment ,Correlation ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Internal medicine ,Medicine ,business ,Early breast cancer - Abstract
Background: Prosigna's ROR score was demonstrated as a strong predictor of response to NAC in a representative cohort of EBC patients including HR+/HER2- N0-N1 patients.1 Given that the ROR score is partially derived from the correlation of the tumor's expression profile to that of the four prototypical intrinsic subtypes, we determined the relative strength of the association between each subtype correlation and the likelihood of response to NAC. Methods: We analyzed 294 FFPE breast cancer samples from pts treated with NAC (anthracyclines and taxanes) in a multi-center Spanish cohort. The Prosigna Assay was performed on the NanoString nCounter® Dx Analysis System at HU Virgen de la Victoria de Málaga/CIMES-UMA. Pathologic complete response (pCR) was used as the primary endpoint for this study and was determined using the Miller and Payne scoring criteria. Results: Mean patient age in this population was 50 (±11yr). Apart from targeted therapy, all patients received a standard neoadjuvant treatment regimen consisting of 8-12 cycles of anthracyclines and taxanes. 58% of patients were HR+/HER2- while 24% were classified as HER2+ and 18% were TNBC patients. Of the 311 pts samples previously tested, subtype correlation data was available for 294. Overall subtype concordance between IHC and Prosigna was 72% (K=0.66). The overall pCR rate in this population was 24.9%. Prosigna subtype breakdown in the full study population was 60 Luminal A, 118 Luminal B, 69 HER2-enriched and 47 Basal-like with response rates of 7.2%, 7.2%, 46.2% and 57.4%, respectively. We found that in all study populations, subtype correlation was a strong predictor of response to NAC. Tumors with expression profiles that correlated well with the Luminal prototypical centroids were found to be largely unresponsive to NAC (Luminal A Odds ratio=0.074 per unit increase, p 1Rodriguez B, Lavado Fernandez A, Ribelles N, et al. Prosigna (PAM50) to predict response to neoadjuvant chemotherapy (NAC) in HR+/HER2- early breast cancer (EBC) patients. J Clin Oncol 33, 2015 (suppl; abstr 11049). Citation Format: Chica Parrado R, Jiménez-Rodríguez B, Sánchez Rovira P, Álvarez M, Vicioso L, Fernandez AI, de Luque V, José Lozano M, Villar E, Zarcos I, Ramírez C, González-Hermoso C, Jeiranian A, Dowidar N, Schaper C, Buckingham W, Ferree S, Ribelles N, Rodrigo I, Prat AP, Alba E. Prosigna® subtype correlation is a strong predictor of response to neoadjuvant chemotherapy (NAC) in early breast cancer (EBC) study. [abstract]. In: Proceedings of the Thirty-Eighth Annual CTRC-AACR San Antonio Breast Cancer Symposium: 2015 Dec 8-12; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2016;76(4 Suppl):Abstract nr P3-07-15.
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- 2016
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8. Abstract P3-07-14: Prosigna® intrinsic subtyping predicts response to neoadjuvant combination therapy in study that includes herceptin within HER2+ (IHC) patients
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P. Sanchez Rovira, Ester Villar, V. de Luque, Antonio Núñez Jiménez, Irene Zarcos, C González-Hermoso, A Isabel Fernandez, Sean Ferree, Arthur Jeiranian, Begoña Jiménez-Rodríguez, Wesley Buckingham, Carl Schaper, Naeem Dowidar, Cesar E. Ramirez, Emiliano Zamora de Alba, Luis Vicioso, Angela Santonja, Nuria Ribelles, C. Fernandez de Sousa, Aleix Prat, and M. Alvarez
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Oncology ,Cancer Research ,medicine.medical_specialty ,education.field_of_study ,Combination therapy ,business.industry ,medicine.medical_treatment ,Population ,Cancer ,medicine.disease ,Surgery ,Regimen ,Breast cancer ,Trastuzumab ,Internal medicine ,medicine ,Population study ,skin and connective tissue diseases ,business ,education ,Neoadjuvant therapy ,medicine.drug - Abstract
Background: The role of the HER2-enriched (HER2E) subtype determined by the Prosigna Assay in the neoadjuvant setting has remained largely uncharacterized. In this study, we examine whether Prosigna can identify a subgroup of HER2+ patients for whom combination neoadjuvant therapy that includes trastuzumab (Herceptin) is associated with a greater likelihood of pathological complete response (pCR). Methods: In this single-arm retrospective analysis, 75 patients determined to be HER2+ by IHC were treated with a neoadjuvant regimen (NAC) consisting of 8-12 cycles of anthracyclines and taxanes as well as Herceptin. The Prosigna Assay was performed on the NanoString nCounter® Dx Analysis System at HU Virgende la Victoria de Málaga/CIMES-UMA. pCR was used as the endpoint for this study and was determined using the Miller & Payne scoring criteria. Results: Mean patient age for this study population was 49 (±11.1yr) and all patients were determined to be HER2+ by IHC. The overall pCR rate in this patient population was 46.2%. Of the 75 patient samples analyzed for this study, 59 (78.6%) were HER2E, 4 (5.3%) were Luminal A and 12 (16.1%) were Luminal B, as identified by the Prosigna Assay. Of the 16 tumors classified as Luminal (A or B) by Prosigna within this HER2+ population, only 2 (12.5%) responders were observed. Categorical analysis revealed that Prosigna subtype predicted response to a NAC regimen combined with Herceptin (Odds ratio [Her2E vs. non-Her2E]=6.4, p=0.023). Further analysis of the Her2E subtype revealed that tumors with profile expression that correlated well with the prototypical Her2E centroid were significantly more likely to respond to combination NAC and Herceptin (Odds ratio [Unit increase of 1 in Her2E correlation]=88.2, p=0.004). Conclusions: The results of this study indicate that HER2+ patients with greater correlations to the HER2E subtype have an increased likelihood of response to combination neoadjuvant regimens that included HER2-targeted therapy. Citation Format: Santonja Á, Ribelles N, Jiménez-Rodríguez B, Sánchez Rovira P, Álvarez M, Vicioso L, Isabel Fernandez A, de Luque V, Fernández de Sousa C, Villar E, Zarcos I, Ramírez C, González-Hermoso C, Jeiranian A, Dowidar N, Schaper C, Buckingham W, Ferree S, Jiménez A, Prat A, Alba E. Prosigna® intrinsic subtyping predicts response to neoadjuvant combination therapy in study that includes herceptin within HER2+ (IHC) patients. [abstract]. In: Proceedings of the Thirty-Eighth Annual CTRC-AACR San Antonio Breast Cancer Symposium: 2015 Dec 8-12; San Antonio, TX. Philadelphia (PA): AACR; Cancer Res 2016;76(4 Suppl):Abstract nr P3-07-14.
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- 2016
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9. Coupling trapped ion mobility spectrometry to mass spectrometry: trapped ion mobility spectrometry-time-of-flight mass spectrometry versus trapped ion mobility spectrometry-Fourier transform ion cyclotron resonance mass spectrometry
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Dennys Leyva, Rudolf Jaffé, Cesar E. Ramirez, Paolo Benigni, Francisco Fernandez-Lima, Mark E. Ridgeway, Abigail Sundberg, Melvin A. Park, Wanderson Romão, and Lilian V. Tose
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Range (particle radiation) ,Spectrum analyzer ,Chemistry ,Ion-mobility spectrometry ,010401 analytical chemistry ,Organic Chemistry ,Analytical chemistry ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Chemical formula ,Fourier transform ion cyclotron resonance ,0104 chemical sciences ,Analytical Chemistry ,Mass ,Time-of-flight mass spectrometry ,Spectroscopy - Abstract
RATIONALE There is a need for fast, post-ionization separation during the analysis of complex mixtures. In this study, we evaluate the use of a high-resolution mobility analyzer with high-resolution and ultrahigh-resolution mass spectrometry for unsupervised molecular feature detection. Goals include the study of the reproducibility of trapped ion mobility spectrometry (TIMS) across platforms, applicability range, and potential challenges during routine analysis. METHODS A TIMS analyzer was coupled to time-of-flight mass spectrometry (TOF MS) and Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) instruments for the analysis of singly charged species in the m/z 150-800 range of a complex mixture (Suwannee River Fulvic Acid Standard). Molecular features were detected using an unsupervised algorithm based on chemical formula and IMS profiles. RESULTS TIMS-TOF MS and TIMS-FT-ICR MS analysis provided 4950 and 7760 m/z signals, 1430 and 3050 formulas using the general Cx Hy N0-3 O0-19 S0-1 composition, and 7600 and 22 350 [m/z; chemical formula; K; CCS] features, respectively. CONCLUSIONS TIMS coupled to TOF MS and FT-ICR MS showed similar performance and high reproducibility. For the analysis of complex mixtures, both platforms were able to capture the major trends and characteristics; however, as the chemical complexity at the level of nominal mass increases with m/z (m/z >300-350), only TIMS-FT-ICR MS was able to report the lower abundance compositional trends.
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- 2018
10. JH biosynthesis and hemolymph titers in adult male Aedes aegypti mosquitoes
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Salvador Hernández-Martínez, Francisco Fernandez-Lima, Marcela Nouzova, Crisalejandra Rivera-Perez, Cesar E. Ramirez, Fernando G. Noriega, and Veronika Michalkova
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0301 basic medicine ,Male ,media_common.quotation_subject ,030231 tropical medicine ,Aedes aegypti ,Insemination ,Biosynthesis ,Biochemistry ,Article ,Corpora allata ,Andrology ,03 medical and health sciences ,0302 clinical medicine ,Mosquito ,Aedes ,Hemolymph ,Reproductive biology ,Animals ,Molecular Biology ,media_common ,biology ,Fecundity ,biology.organism_classification ,Juvenile Hormones ,030104 developmental biology ,Insect Science ,Juvenile hormone ,Corpus allatum ,Reproduction - Abstract
Juvenile hormone (JH) is a major hormonal regulator in insects. In Aedes aegypti females, JH signals the completion of the ecdysis to the adult stage and initiates reproductive processes. Although the regulation of JH synthesis and titer in Ae. aegypti females has been extensively studied, relatively little is known about changes of JH synthesis and titers in male mosquitoes, as well as on the roles of JH controlling male reproductive biology. A better understanding of male mosquito reproductive biology, including an improved knowledge of the hormonal control of reproduction, could increase the likelihood of success of male-targeting vector control programs. Using a high performance liquid chromatography coupled to electrospray tandem mass spectrometry method, we measured JH biosynthesis and hemolymph levels in male mosquitoes during pupal and adult stages. Our results revealed tightly concomitant changes in JH biosynthesis and JH hemolymph titers. Synthesis of JH III was very low in late pupae , significantly increased during the first 24 h after adult eclosion , and then remained relatively constant during the first six days after adult eclosion. Feeding high sugar diets resulted in an increase of JH synthesis and titers, and starvation significantly decreased JH synthesis, but this effect could be reversed by changing the males back to a high sugar diet. JH synthesis rates were similar in virgin and mated males, but hemolymph JH levels were different in well-nourished virgin and mated males. Starvation resulted in a significant reduction in insemination rates; with well-nourished males inseminating 2 times more females than water-fed. Giving a 20% sugar meal for 24 h to those mosquitoes that were previously starved for 6 days, caused a significant rise in insemination rates, restoring them to levels similar to those recorded for 20% fed males. These results suggest that nutrition plays a role on male fecundity, and this effect might be mediated by JH.
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- 2018
11. Novel Analytical Methodologies for the Monitoring of Traditional and Non-traditional Pollutants in different Environmental Compartments of South Florida
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Cesar E. Ramirez
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Pollutant ,Hazardous waste ,Environmental chemistry ,Environmental engineering ,Environmental science ,Sample preparation ,Environmental pollution ,Seawater ,Contamination ,Particulates ,Corexit - Abstract
Routine monitoring of environmental pollution demands simplicity and speed without sacrificing sensitivity or accuracy. The development and application of sensitive, fast and easy to implement analytical methodologies for detecting emerging and traditional water and airborne contaminants in South Florida is presented. A novel method was developed for quantification of the herbicide glyphosate based on lyophilization followed by derivatization and simultaneous detection by fluorescence and mass spectrometry. Samples were analyzed from water canals that will hydrate estuarine wetlands of Biscayne National Park, detecting inputs of glyphosate from both aquatic usage and agricultural runoff from farms. A second study describes a set of fast, automated LC-MS/MS protocols for the analysis of dioctyl sulfosuccinate (DOSS) and 2-butoxyethanol, two components of Corexit ® . Around 1.8 million gallons of those dispersant formulations were used in the response efforts for the Gulf of Mexico oil spill in 2010. The methods presented here allow the trace-level detection of these compounds in seawater, crude oil and commercial dispersants formulations. In addition, two methodologies were developed for the analysis of well-known pollutants, namely Polycyclic Aromatic Hydrocarbons (PAHs) and airborne particulate matter (APM). PAHs are ubiquitous environmental contaminants and some are potent carcinogens. Traditional GC-MS analysis is labor-intensive and consumes large amounts of toxic solvents. My study provides an alternative automated SPE-LC-APPI-MS/MS analysis with minimal sample preparation and a lower solvent consumption. The system can inject, extract, clean, separate and detect 28 PAHs and 15 families of alkylated PAHs in 28 minutes. The methodology was tested with environmental samples from Miami. Airborne Particulate Matter is a mixture of particles of chemical and biological origin. Assessment of its elemental composition is critical for the protection of sensitive ecosystems and public health. The APM collected from Port Everglades between 2005 and 2010 was analyzed by ICP-MS after acid digestion of filters. The most abundant elements were Fe and Al, followed by Cu, V and Zn. Enrichment factors show that hazardous elements (Cd, Pb, As, Co, Ni and Cr) are introduced by anthropogenic activities. Data suggest that the major sources of APM were an electricity plant, road dust, industrial emissions and marine vessels.
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- 2017
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12. Towards Discovery and Targeted Peptide Biomarker Detection Using nanoESI-TIMS-TOF MS
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Richard D. Smith, Paolo Benigni, Cesar E. Ramirez, Tao Liu, Erin S. Baker, Alyssa Garabedian, and Francisco Fernandez-Lima
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Proteomics ,Spectrometry, Mass, Electrospray Ionization ,Resolution (mass spectrometry) ,Ion-mobility spectrometry ,Quantitative proteomics ,Peptide ,Breast Neoplasms ,010402 general chemistry ,Mass spectrometry ,01 natural sciences ,Article ,Workflow ,Structural Biology ,Tandem Mass Spectrometry ,Ion Mobility Spectrometry ,Biomarkers, Tumor ,Humans ,Amino Acid Sequence ,Spectroscopy ,chemistry.chemical_classification ,Chromatography ,Chemistry ,010401 analytical chemistry ,0104 chemical sciences ,Biomarker (medicine) ,Female ,Time-of-flight mass spectrometry ,Peptides - Abstract
In the present work, the potential of trapped ion mobility spectrometry coupled to TOF mass spectrometry (TIMS-TOF MS) for discovery and targeted monitoring of peptide biomarkers from human-in-mouse xenograft tumor tissue was evaluated. In particular, a TIMS-MS workflow was developed for the detection and quantification of peptide biomarkers using internal heavy analogs, taking advantage of the high mobility resolution (R = 150-250) prior to mass analysis. Five peptide biomarkers were separated, identified, and quantified using offline nanoESI-TIMS-CID-TOF MS; the results were in good agreement with measurements using a traditional LC-ESI-MS/MS proteomics workflow. The TIMS-TOF MS analysis permitted peptide biomarker detection based on accurate mobility, mass measurements, and high sequence coverage for concentrations in the 10-200 nM range, while simultaneously achieving discovery measurements of not initially targeted peptides as markers from the same proteins and, eventually, other proteins. Graphical Abstract ᅟ.
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- 2017
13. Common structural features facilitate the simultaneous identification and quantification of the five most common juvenile hormones by liquid chromatography-tandem mass spectrometry
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Veronika Michalkova, Francisco Fernandez-Lima, Marcela Nouzova, Fernando G. Noriega, and Cesar E. Ramirez
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0106 biological sciences ,Electrospray ,Absolute quantification ,Biology ,Tandem mass spectrometry ,01 natural sciences ,Biochemistry ,Article ,Heteroptera ,03 medical and health sciences ,Tandem Mass Spectrometry ,Liquid chromatography–mass spectrometry ,Animals ,Methyl farnesoate ,Molecular Biology ,030304 developmental biology ,0303 health sciences ,Chromatography ,Diptera ,Selected reaction monitoring ,Hymenoptera ,Juvenile Hormones ,Lepidoptera ,010602 entomology ,Insect Science ,Juvenile hormone ,Identification (biology) ,Chromatography, Liquid - Abstract
This study reports the development and application of a liquid chromatography method coupled to electrospray tandem mass spectrometry (LC-MS/MS) for the identification and quantification of the five most common juvenile hormone (JH) homologs and methyl farnesoate (MF). The protocol allows the simultaneous analysis in a single LC run of JH I, JH II, JH III, JH III bisepoxide (JHB3) and JH III skipped bisepoxide (JHSB3). The identification of JHs is based on multiple reaction monitoring (MRM), using two of the most abundant fragmentation transitions for each hormone. Addition of deuterated JH III as an internal standard permits the absolute quantification of the different JHs. The JH homologs common structural features led to similar chromatographic behavior, as well as related fragmentation patterns, which facilitated the simultaneous detection of all the homologs in a single LC-MS/MS run. The protocol detects JHs in the low femtomole range, allowing often the analysis of JH in individual insects. Fragmentation of each of the JH homologs generates unique diagnostic ions that permitted the identification and quantification of JHs from samples of different species of Diptera, Lepidoptera, Heteroptera and Hymenoptera. Having a simple protocol, which can undisputedly determine the identity of the homologs present in a particular species, provides us with the opportunity to identify and quantify JHs existing in insects that are pests, vector of diseases or important research models.
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- 2020
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14. Fully automated trace level determination of parent and alkylated PAHs in environmental waters by online SPE-LC-APPI-MS/MS
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Cesar E. Ramirez, Piero R. Gardinali, and Chengtao Wang
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Chromatography ,Resolution (mass spectrometry) ,Chemistry ,Extraction (chemistry) ,Mass spectrometry ,Biochemistry ,High-performance liquid chromatography ,Analytical Chemistry ,Solvent ,chemistry.chemical_compound ,Chlorobenzene ,Environmental chemistry ,Sample preparation ,Effluent - Abstract
Polycyclic aromatic hydrocarbons (PAHs) are ubiquitous compounds that enter the environment from natural and anthropogenic sources, often used as markers to determine the extent, fate, and potential effects on natural resources after a crude oil accidental release. Gas chromatography-mass spectrometry (GC-MS) after liquid-liquid extraction (LLE+GC-MS) has been extensively used to isolate and quantify both parent and alkylated PAHs. However, it requires labor-intensive extraction and cleanup steps and generates large amounts of toxic solvent waste. Therefore, there is a clear need for greener, faster techniques with enough reproducibility and sensitivity to quantify many PAHs in large numbers of water samples in a short period of time. This study combines online solid-phase extraction followed by liquid chromatography (LC) separation with dopant-assisted atmospheric pressure photoionization (APPI) and tandem MS detection, to provide a one-step protocol that detects PAHs at low nanograms per liter with almost no sample preparation and with a significantly lower consumption of toxic halogenated solvents. Water samples were amended with methanol, fortified with isotopically labeled PAHs, and loaded onto an online SPE column, using a large-volume sample loop with an auxiliary LC pump for sample preconcentration and salt removal. The loaded SPE column was connected to an UPLC pump and analytes were backflushed to a Thermo Hypersil Green PAH analytical column where a 20-min gradient separation was performed at a variable flow rate. Detection was performed by a triple-quadrupole MS equipped with a gas-phase dopant delivery system, using 1.50 mL of chlorobenzene dopant per run. In contrast, LLE+GC-MS typically use 150 mL of organic solvents per sample, and methylene chloride is preferred because of its low boiling point. However, this solvent has a higher environmental persistence than chlorobenzene and is considered a carcinogen. The automated system is capable of performing injection, online SPE, inorganic species removal, LC separation, and MS/MS detection in 28 min. Selective reaction monitoring was used to detect 28 parent PAHs and 15 families of alkylated PAHs. The methodology is comparable to traditional GC-MS and was tested with surface seawater, rainwater runoff, and a wastewater treatment plant effluent. Positive detections above reporting limits are described. The virtual absence of sample preparation could be particularly advantageous for real-time monitoring of discharge events that introduce PAHs into environmental compartments, such as accidental releases of petroleum derivates and other human-related events. This work covers optimization of APPI detection and SPE extraction efficiency, a comparison with LLE+GC-MS in terms of sensitivity and chromatographic resolution, and examples of environmental applications.
- Published
- 2013
- Full Text
- View/download PDF
15. High sensitivity liquid chromatography tandem mass spectrometric methods for the analysis of dioctyl sulfosuccinate in different stages of an oil spill response monitoring effort
- Author
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Cesar E. Ramirez, Sudha Rani Batchu, and Piero R. Gardinali
- Subjects
Detection limit ,Analyte ,Chromatography ,Electrospray ionization ,Analytical chemistry ,Mass spectrometry ,Biochemistry ,Dispersant ,Analytical Chemistry ,Matrix (chemical analysis) ,chemistry.chemical_compound ,chemistry ,2-Butoxyethanol ,Seawater - Abstract
After the incident on the Deepwater Horizon platform, around 1.8 million gallons of dispersants were used in the field as part of the response cleanup efforts. This study describes an online solid phase extraction-liquid chromatography (LC)-tandem mass spectrometry (MS/MS) method and a direct-injection LC-MS/MS method for the analysis of dioctyl sulfosuccinate (DOSS; a component in Corexit® EC9500A) in seawater at trace levels, with method detection limits (MDLs) of 7.0 and 440 ng/L and run times of 7 and 17 min, respectively. Stability and preservation studies demonstrated that samples at 4.7 μg/L could be preserved for up to 150 days without loss of analyte when stored with 33 % acetonitrile in glass containers. Data acquisition was performed by heated electrospray ionization (ESI) MS/MS operating in negative mode. Methods were validated in terms of percent recovery in fortified blank and matrix samples and to evaluate carryover. A simple modification of the direct-injection method allowed quantitation of 2-butoxyethanol, a dispersant component specific to the Corexit® EC9527A formulation. This method was used to simultaneously quantify DOSS and 2-butoxyethanol in two Corexit® formulations and extracts from an MC-252 source oil standard. MDLs in crude oil were 0.723 and 4.46 mg/kg, respectively, with recoveries of (92 ± 9)% for DOSS and (104 ± 8)% for 2-butoxyethanol. Detection of both indicators was achieved in a single chromatographic run by ESI-MS/MS operating sequentially in positive and negative mode. Corexit® EC9500A and Corexit® EC9527A were found to contain (21 ± 2)% and (22 ± 5)% w/w DOSS and 0 and (37 ± 2)% w/w 2-butoxyethanol, respectively.
- Published
- 2013
- Full Text
- View/download PDF
16. Fast, ultra-trace detection of juvenile hormone III from mosquitoes using mass spectrometry
- Author
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J. Martin E. Quirke, Francisco Fernandez-Lima, Marcela Nouzova, Paolo Benigni, Cesar E. Ramirez, and Fernando G. Noriega
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0301 basic medicine ,Detection limit ,Electrospray ,Reproducibility ,Chromatography ,Chemistry ,Reproducibility of Results ,Tandem mass spectrometry ,Mass spectrometry ,Fluorescence ,Chemistry Techniques, Analytical ,Article ,Analytical Chemistry ,03 medical and health sciences ,030104 developmental biology ,Culicidae ,Juvenile hormone III ,Limit of Detection ,Tandem Mass Spectrometry ,Animals ,Sample preparation ,Sesquiterpenes ,Chromatography, Liquid - Abstract
In the present work, a new protocol for fast separation and quantification of JH III from biological samples using liquid chromatography coupled to electrospray tandem mass spectrometry is described. In particular, the proposed protocol improves existing methodologies by combining a limited number of sample preparation steps with fast LC-MS/MS detection, providing lower limits of detection and demonstrated matrix effect control, together with high inter and intraday reproducibility. A limit of detection of 8pg/mL (0.32pg on column) was achieved, representing a 15-fold gain in sensitivity with respect to previous LC-MS based protocols. The performance of the LC-MS/MS protocol is comparable to previously described JH III quantitation protocol based on fluorescence detection, with the added advantage that quantification is independent of the availability of fluorescent tags that are often unavailable or show quite diverse responses on a batch-to-batch basis. Additionally, a detailed description of the JH III fragmentation pathway is provided for the first time, based on isolation of the molecular ion and their intermediate fragments using in-source MS/MS, MS/MS(n) and FT-ICR MS/MS measurements. The JH III workflow was evaluated as a function of developmental changes, sugar feeding and farnesoic acid stimulation in mosquitoes and can be applied to the detection of other juvenile hormones.
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- 2016
17. Rapid ultra-trace analysis of sucralose in multiple-origin aqueous samples by online solid-phase extraction coupled to high-resolution mass spectrometry
- Author
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Sudha Rani Batchu, Cesar E. Ramirez, and Piero R. Gardinali
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Analyte ,Sucralose ,Spectrometry, Mass, Electrospray Ionization ,Sucrose ,Mass spectrometry ,Orbitrap ,Biochemistry ,Online Systems ,Sensitivity and Specificity ,Analytical Chemistry ,law.invention ,chemistry.chemical_compound ,law ,Sample preparation ,Solid phase extraction ,Chromatography ,Chemistry ,Microchemistry ,Solid Phase Extraction ,Reproducibility of Results ,Water ,Wastewater ,Environmental chemistry ,Seawater ,Water Pollutants, Chemical ,Environmental Monitoring - Abstract
Because of its widespread consumption and its persistence during wastewater treatment, the artificial sweetener sucralose has gained considerable interest as a proxy to detect wastewater intrusion into usable water resources. The molecular resilience of this compound dictates that coastal and oceanic waters are the final recipient of this compound with unknown effects on ecosystems. Furthermore, no suitable methodologies have been reported for routine, ultra-trace detection of sucralose in seawater as the sensitivity of traditional liquid chromatography-tandem mass spectrometry (LC-MS/MS) analysis is limited by a low yield of product ions upon collision-induced dissociation (CID). In this work, we report the development and field test of an alternative analysis tool for sucralose in environmental waters, with enough sensitivity for the proper quantitation and confirmation of this analyte in seawater. The methodology is based on automated online solid-phase extraction (SPE) and high-resolving-power orbitrap MS detection. Operating in full scan (no CID), detection of the unique isotopic pattern (100:96:31 for [M-H](-), [M-H+2](-), and [M-H+4](-), respectively) was used for ultra-trace quantitation and analyte identification. The method offers fast analysis (14 min per run) and low sample consumption (10 mL per sample) with method detection and confirmation limits (MDLs and MCLs) of 1.4 and 5.7 ng/L in seawater, respectively. The methodology involves low operating costs due to virtually no sample preparation steps or consumables. As an application example, samples were collected from 17 oceanic and estuarine sites in Broward County, FL, with varying salinity (6-40 PSU). Samples included the ocean outfall of the Southern Regional Wastewater Treatment Plant (WWTP) that serves Hollywood, FL. Sucralose was detected above MCL in 78% of the samples at concentrations ranging from 8 to 148 ng/L, with the exception of the WWTP ocean outfall (at pipe end, 28 m below the surface) where the measured concentration was 8418 ± 3813 ng/L. These results demonstrate the applicability of this monitoring tool for the trace-level detection of this wastewater marker in very dilute environmental waters.
- Published
- 2014
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