Search

Premise: Pandanus Parkinson (Pandanaceae) is a large genus of paleotropical tree-like monocots. Previous studies using small DNA regions questioned the monophyly of the seven Pandanus subgenera, but low phylogenetic branch support hindered further investigations. We aimed to (1) test Pandanus subgeneric monophyly, (2) identify clade morphological synapomorphies, (3) investigate correlations between leaf anatomy of water storage tissue and climatic differentiation across clades, and (4) construct hypotheses on the genus' spatiotemporal history., Methods: We sequenced 50 Pandanus species using genome skimming and reconstructed plastomes with MITObim. We inferred partitioned RAxML phylogenetic trees to test subgeneric monophyly using Shimodaira-Hasegawa tests. We inferred a partitioned dated BEAST phylogenetic tree used for ancestral state reconstructions of morphological traits. Phylogenetic clades were used to compare climatic (Bioclim) and soil (UNESCO Digital Soil Map) conditions using random forests. We correlated present morphology and climatic niche with past climate events., Results: Our phylogenetic analyses revealed two clades and four subclades. Only subgenus Coronata was monophyletic. Staminate synapomorphies were identified for three subclades. Hypertrophied and hyperplasic water-storage tissue was a synapomorphy for clade II, correlating with more seasonal temperature and precipitation regimes and more well-draining soil. Clades differentiated during the advent of the Southeast Asian monsoon in the early Miocene, whereas subclades differentiated during the Miocene Thermal Maximum., Conclusions: Pandanus subgeneric classification needs to be revised. Hypertrophied hyperplasic water-storage tissue is a key trait in Pandanus evolution, possibly explaining climatic and biogeographic patterns because it is key to maintaining photosynthesis during periods of hydric stress., (© 2025 Botanical Society of America.)

Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods 1,2 . A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance. So far, the angiosperm tree of life has been determined primarily by means of analyses of the plastid genome 3,4 . Many studies have drawn on this foundational work, such as classification and first insights into angiosperm diversification since their Mesozoic origins 5-7 . However, the limited and biased sampling of both taxa and genomes undermines confidence in the tree and its implications. Here, we build the tree of life for almost 8,000 (about 60%) angiosperm genera using a standardized set of 353 nuclear genes 8 . This 15-fold increase in genus-level sampling relative to comparable nuclear studies 9 provides a critical test of earlier results and brings notable change to key groups, especially in rosids, while substantiating many previously predicted relationships. Scaling this tree to time using 200 fossils, we discovered that early angiosperm evolution was characterized by high gene tree conflict and explosive diversification, giving rise to more than 80% of extant angiosperm orders. Steady diversification ensued through the remaining Mesozoic Era until rates resurged in the Cenozoic Era, concurrent with decreasing global temperatures and tightly linked with gene tree conflict. Taken together, our extensive sampling combined with advanced phylogenomic methods shows the deep history and full complexity in the evolution of a megadiverse clade., (© 2024. The Author(s).)

Sapindales is an angiosperm order of high economic and ecological value comprising nine families, c. 479 genera, and c. 6570 species. However, family and subfamily relationships in Sapindales remain unclear, making reconstruction of the order's spatio-temporal and morphological evolution difficult. In this study, we used Angiosperms353 target capture data to generate the most densely sampled phylogenetic trees of Sapindales to date, with 448 samples and c. 85% of genera represented. The percentage of paralogous loci and allele divergence was characterized across the phylogeny, which was time-calibrated using 29 rigorously assessed fossil calibrations. All families were supported as monophyletic. Two core family clades subdivide the order, the first comprising Kirkiaceae, Burseraceae, and Anacardiaceae, the second comprising Simaroubaceae, Meliaceae, and Rutaceae. Kirkiaceae is sister to Burseraceae and Anacardiaceae, and, contrary to current understanding, Simaroubaceae is sister to Meliaceae and Rutaceae. Sapindaceae is placed with Nitrariaceae and Biebersteiniaceae as sister to the core Sapindales families, but the relationships between these families remain unclear, likely due to their rapid and ancient diversification. Sapindales families emerged in rapid succession, coincident with the climatic change of the Mid-Cretaceous Hothouse event. Subfamily and tribal relationships within the major families need revision, particularly in Sapindaceae, Rutaceae and Meliaceae. Much of the difficulty in reconstructing relationships at this level may be caused by the prevalence of paralogous loci, particularly in Meliaceae and Rutaceae, that are likely indicative of ancient gene duplication events such as hybridization and polyploidization playing a role in the evolutionary history of these families. This study provides key insights into factors that may affect phylogenetic reconstructions in Sapindales across multiple scales, and provides a state-of-the-art phylogenetic framework for further research., Competing Interests: The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest. Yanã Campos Rizzieri, School of Integrative Plant Sciences, Plant Biology Section, Cornell University, in collaboration with reviewer JO., (Copyright © 2023 Joyce, Appelhans, Buerki, Cheek, de Vos, Pirani, Zuntini, Bachelier, Bayly, Callmander, Devecchi, Pell, Groppo, Lowry, Mitchell, Siniscalchi, Munzinger, Orel, Pannell, Nauheimer, Sauquet, Weeks, Muellner-Riehl, Leitch, Maurin, Forest, Nargar, Thiele, Baker and Crayn.)

Premise: The economically important, cosmopolitan soapberry family (Sapindaceae) comprises ca. 1900 species in 144 genera. Since the seminal work of Radlkofer, several authors have attempted to overcome challenges presented by the family's complex infra-familial classification. With the advent of molecular systematics, revisions of the various proposed groupings have provided significant momentum, but we still lack a formal classification system rooted in an evolutionary framework., Methods: Nuclear DNA sequence data were generated for 123 genera (86%) of Sapindaceae using target sequence capture with the Angiosperms353 universal probe set. HybPiper was used to produce aligned DNA matrices. Phylogenetic inferences were obtained using coalescence-based and concatenated methods. The clades recovered are discussed in light of both benchmark studies to identify synapomorphies and distributional evidence to underpin an updated infra-familial classification., Key Results: Coalescence-based and concatenated phylogenetic trees had identical topologies and node support, except for the placement of Melicoccus bijugatus Jacq. Twenty-one clades were recovered, which serve as the basis for a revised infra-familial classification., Conclusions: Twenty tribes are recognized in four subfamilies: two tribes in Hippocastanoideae, two in Dodonaeoideae, and 16 in Sapindoideae (no tribes are recognized in the monotypic subfamily Xanthoceratoideae). Within Sapindoideae, six new tribes are described: Blomieae Buerki & Callm.; Guindilieae Buerki, Callm. & Acev.-Rodr.; Haplocoeleae Buerki & Callm.; Stadmanieae Buerki & Callm.; Tristiropsideae Buerki & Callm.; and Ungnadieae Buerki & Callm. This updated classification provides a backbone for further research and conservation efforts on this family., (© 2021 The Authors. American Journal of Botany published by Wiley Periodicals LLC on behalf of Botanical Society of America.)

New Guinea is the world's largest tropical island and has fascinated naturalists for centuries 1,2 . Home to some of the best-preserved ecosystems on the planet 3 and to intact ecological gradients-from mangroves to tropical alpine grasslands-that are unmatched in the Asia-Pacific region 4,5 , it is a globally recognized centre of biological and cultural diversity 6,7 . So far, however, there has been no attempt to critically catalogue the entire vascular plant diversity of New Guinea. Here we present the first, to our knowledge, expert-verified checklist of the vascular plants of mainland New Guinea and surrounding islands. Our publicly available checklist includes 13,634 species (68% endemic), 1,742 genera and 264 families-suggesting that New Guinea is the most floristically diverse island in the world. Expert knowledge is essential for building checklists in the digital era: reliance on online taxonomic resources alone would have inflated species counts by 22%. Species discovery shows no sign of levelling off, and we discuss steps to accelerate botanical research in the 'Last Unknown' 8 .

There is increased evidence that incorporating evolutionary history directly in conservation actions is beneficial, particularly given the likelihood that extinction is not random and that phylogenetic diversity (PD) is lost at higher rates than species diversity. This evidence is even more compelling in biodiversity hotspots, such as Madagascar, where less than 10% of the original vegetation remains. Here, we use the Leguminosae, an ecologically and economically important plant family, and a combination of phylogenetics and species distribution modelling, to assess biodiversity patterns and identify regions, coevolutionary processes and ecological factors that are important in shaping this diversity, especially during the Quaternary. We show evidence that species distribution and community PD are predicted by watershed boundaries, which enable the identification of a network of refugia and dispersal corridors that were perhaps important for maintaining community integrity during past climate change. Phylogenetically clustered communities are found in the southwest of the island at low elevation and share a suite of morphological characters (especially fruit morphology) indicative of coevolution with their main dispersers, the extinct and extant lemurs. Phylogenetically over-dispersed communities are found along the eastern coast at sea level and may have resulted from many independent dispersal events from the drier and more seasonal regions of Madagascar., (© 2015 The Author(s) Published by the Royal Society. All rights reserved.)

A taxonomic revision of the genus Gouania Jacq. (Rhamnaceae) is presented for Madagascar and the other western Indian Ocean islands. Seventeen species are recognized, of which nine are described and published as new (all endemic to Madagascar): G. ambrensis Buerki, Phillipson & Callm., G. callmanderi Buerki, G. cupreifolia Buerki, Phillipson & Callm., G. cupuliflora Buerki, Phillipson & Callm., G. gautieri Buerki, Phillipson & Callm., G. perrieri Buerki, Phillipson & Callm., G. phillipsonii Buerki, G. taolagnarensis Buerki, Phillipson & Callm., and G. zebrifolia Buerki, Phillipson & Callm. Sixteen species occur in Madagascar, of which 13 are endemic and three are common to Madagascar and one or more of the smaller Indian Ocean islands. The latter include G. laxiflora Tul., a species which is also present on mainland Africa. One species, G. mauritiana Lam., is endemic to Réunion Island. We recognize two subspecies within G. scandens (Gaertn.) R. B. Drumm.: G. scandens subsp. scandens and G. scandens subsp. glandulosa (Boivin ex Tul.) Buerki, Phillipson & Callm., the latter transferred from G. glandulosa Boivin ex Tul. Past confusion about the identity of this species is discussed. Five names are lectotypified: G. aphrodes Tul., G. glandulosa [= G. scandens subsp. glandulosa], G. laxiflora, G. lineata Tul., and G. tiliifolia Lam. Both lectotype and epitype are designated for G. mauritiana. Conservation assessments are provided for all species within their primary areas of occurrence.

A recent review of Bignoniaceae for the "Catalogue of the vascular plants of Madagascar" has revealed new species in most of the genera present on the island. We provide descriptions of four new species in the genus Ophiocolea H. Perrier, a genus that is endemic to the Malagasy region: Ophiocolea ambrensis Callm. & Phillipson, Ophiocolea darainensis Callm., Phillipson & Nusb., Ophiocolea pauciflora Callm., Phillipson & Razan. and Ophiocolea ratovosonii Callm. & Phillipson. Field photographs and line drawings are provided for each of these four new species. Two species described previously, Ophiocolea decaryi H. Perrier and Ophiocolea velutina H. Perrier, are lectotypified. For all six treated species, we provide a short discussion on morphological affinities and eco-geography, and perform a conservation threat analysis based on the IUCN Red List Categories and Criteria.

A new species, Pandanus ankaranensis Callm. & Laivao (Pandanaceae), is described from the karst region of Ankarana in northern Madagascar. It resembles P. grallatus B. C. Stone, another member of Pandanus sect. Mammillares H. St. John occurring in the area. The new taxon can be distinguished by its larger and wider leaves that are persistent on the branches, the stipe often lying on the rocks where plants grow, and its larger syncarps. Pandanus ankaranensis is classified as Vulnerable based on the IUCN Red List criteria.

A recent worldwide phylogeny of Sapindaceae inferred from nuclear and plastid DNA regions segregated the Malagasy Haplocoelum perrieri Capuron from the African Haplocoelum foliosum (Hiern) Bullock. Additional phylogenetic analyses conducted here (including material of Haplocoelum inopleum Radlk., the generic type) supported the result from the previous analysis and showed that maintaining a broad circumscription of Haplocoelum to include the Malagasy species would render the genus polyphyletic. To maintain monophyly, it is necessary to exclude H. perrieri, which we transfer to a new, monotypic genus, described here as Gereaua. This taxon is easily distinguished from the species retained in Haplocoelum by the following morphological characters: (1) sexually dimorphic inflorescences in racemules (vs. monomorphic inflorescences in fascicule of cymes); (2) 2-locular ovary (vs. 3-locular ovary); (3) rudimentary pistillode in staminate flowers (vs. no pistillode in staminate flowers); (4) corolla with 4 or 5 petals (vs. apetalous); (5) pubescent fruit (vs. glabrous fruit). Relationships between the new genus and its most closely related genera, included in the Macphersonia group, are discussed in light of molecular, morphological and biogeographic evidence. A preliminary threat assessment of Gereaua perrieri using the IUCN Red List criteria indicates a status of Least Concern.

Malagasy Dracaena (Ruscaceae) are divided into four species and 14 varieties, all of them showing a high level of morphological diversity and a putatively artefactual circumscription. In order to reveal relationships between those entangled entities, a span of Malagasy Dracaena were sampled and analyzed using cpDNA sequences and AFLP. The cpDNA analyses resolved three biogeographic clades that are mostly inconsistent with morphology, since similar phenotypes are found across the three clades. Bayesian inference clustering analyses based on the AFLP were not in accordance with the cpDNA analysis. This result might be explained by (1) a recent origin of the Malagasy species of Dracaena with an incomplete sorting of chloroplast lineages; (2) a high amount of hybridizations; (3) a complex migration pattern. Interestingly, when the AFLP are analyzed using the parsimony criterion, a trend towards a directional evolution of inflorescence types and ecological features was observed. This might be considered either as phenotypic plasticity and/or as the result of fast evolution in flower characters according to habitat preferences. Overall, our results point to the difficulty of defining evolutionarily significant units in Malagasy Dracaena, emphasizing the complex speciation processes taking place in tropical regions.

Pandanus sermolliana Callmander & Buerki (Pandanaceae) is described from humid forests in the Galoka mountain chain in northwestern Madagascar. The new species can be easily distinguished from the other members of the genus it most closely resembles, P. insuetus Huynh and P. perrieri Martelli, by several morphological characters including drupes that are incompletely fused, with each of the dome-like carpels separated from the base of the pileus, and stigmas that are sub-vertical or rarely sub-horizontal, slightly spinescent, and raised on an incompletely united base. This distinctive species is rare and is classified as Critically Endangered based on IUCN threat criteria.

Le genre endèmique malgache Bathiorhamnus Capuron (Rhamnaceae) est l'objet d'une rèvision taxonomique. L'étude des caractères morphologiques permet de reconnaître sept espèces. En plus des deux espèces antérieurement reconnues: B. cryptophorus Capuron et B. louvelii (H.Perrier) Capuron, les trois variétés reconnues dans la seconde sont réévaluées et élevées au rang d'espèce: B. dentatus (Capuron) Callm., Phillipson & Buerki, B. macrocarpus (Capuron) Callm., Phillipson & Buerki, B. reticulatus (Capuron) Callm., Phillipson & Buerki. Deux nouvelles espèces sont décrites: B. capuronii Callm., Phillipson & Buerki, des forêts sèches de l'ouest et du nord et B. vohemarensis Callm., Phillipson & Buerki des forêts littorales situées autour de Vohémar au nord-est. Une clé du genre Bathiorhamnus est présentée ainsi qu'une évaluation préliminaire du statut de conservation de chaque espèce.