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We present a genome assembly from an individual Sardina pilchardus (the sardine; Chordata; Actinopteri; Clupeiformes; Clupeidae). The genome sequence spans 869.40 megabases. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 17.57 kilobases in length.

Three sardine species of Harengula and one of Opisthonema (Clupeiformes, Clupeidae) are known in the Western Atlantic, where the Amazon-Orinoco plume has been recognized as a major biogeographic barrier, albeit permeable to larger and generalist species. Here we used mitochondrial cox1 gene DNA sequences to check the lineage delimitation of both genera, testing the influence of the Amazon-Orinoco barrier (AOB) and marine provinces on their phylogeographic structure. Results indicate that the two genera are differently affected by the AOB, including cryptic speciation in Harengula and population structure in Opisthonema. Harengula show a broad distribution in the Brazilian Province (BRA) distinct from H. clupeola and H. jaguana from the Greater Caribbean Region (GCR). Divergence time between Harengula from the GCR vs. BRA was estimated as about 2.4 Mya, which coincides with the period of increasing sediment and freshwater discharge of the Amazon River in the Atlantic. Results also indicate the existence of a single species of Opisthonema, albeit with population structuring related to the marine provinces. Since species of both genera are relevant to artisanal fisheries and the maintenance of oceanic ecosystems, these results may help in fisheries management of these important marine resources. [ABSTRACT FROM AUTHOR]

The Suborder Clupeoidei Bleeker, 1859 comprises mostly marine fishes, which form large schools feeding on plankton. The fossil record of the suborder in the Late Paleogene reveals that clupeoids were abundant in the Western, Central, as well as Eastern Paratethys. Clupeoid descriptions from the Polish Outer Carpathians (SE Poland, Central Paratethys) remain incomplete due to usage of 'collective species', taxonomical inaccuracies, and lack of clear links between extinct and extant representatives. In this paper we present a new clupeoid, †Beksinskiella gen. nov., from the Oligocene of the Outer Carpathians, Poland. The new genus encompasses the nominal species †Maicopiella longimana (Heckel, 1850). †Beksinskiella gen. nov. has a unique combination of characters (skull roof with frontoparietal striae; smooth opercle; 6-7 branchiostegal rays; 42-48 vertebrae; dorsal and anal fins with 21-23 rays; the last two rays of the anal fin being elongated, and the presence of a complete series of abdominal scutes with the postpelvic ones poorly developed), supporting recognition of a new genus of the Suborder Clupeoidei. Similarities and differences between fossil and extant genera of Cluepoidei are discussed to shed light on their relationship. [ABSTRACT FROM AUTHOR]

The River Mignone (Tarquinia, Viterbo, central Italy) is one of the best preserved watercourses in Lazio. Here, in April and May of the years 2020-2023, a conspicuous contingent of Alosa fallax (Lacépède 1803) was reported. The frenetic behaviour of the individuals observed, some of which showed swollen bellies and considerable size, suggested that this watercourse may represent a potential new breeding station for this threatened migratory euryhaline fish species. The correct recognition of the sex of A. fallax in the field, problematic during the breeding season, is crucial for understanding its population structure as indicators of possible reproduction. To this end, statistical analysis (Mann-Whitney U-test) of 20 morphometric measurements made on individuals captured and subsequently released revealed significant differences between the sexes for seven morphometric characters, confirming a sex ratio compatible with reproduction. However, the presence of a transverse dam with no fish ladder and the dispersion of biocides from farmland in the final stretch may represent a serious threat to effective reproduction.

Evolutionary radiation is a problematic concept whose definition and classification have recently changed. Radiations can be defined as the pattern of abrupt increase in diversity of a lineage. It is relevant to evaluate the presence and interaction of different types of radiation in extant and fossil organisms to adequately delimitate the radiation types and to know the diversity in the context of Earth's history. Here, we employed the superorder Clupeomorpha at the Early–Late Cretaceous boundary as a study case to investigate radiation types and their interactions, using both taxic and morphological approaches. Clupeomorpha is an extensively studied, diverse and ancient teleostean superorder with wide geographical and ecological distributions. We propose a model for calculating rates of origination in order to analyse the taxic diversification and employ geometric morphometrics to analyse the morphological diversification that occurred at the temporal boundary. The results suggest the absence of taxic radiation due to a constant increase in taxon origination. However, the expansion of the phylomorphospace occupation and the disparity increase suggest the presence of a 'climatic–geographical' or 'broad diversification‐like' disparity, according to current classifications. This illustrates the incompatibility of current radiation classifications with this case study. [ABSTRACT FROM AUTHOR]

The present paper is a review of the available literature on the significance of forage fish, the plethora of services they provide, and the threats faced by them. Forage fish are pelagic planktivorous species that operate as conduits of energy between the lower trophic level (plankton) and the upper trophic level (predators). A variety of ecosystem services are provided by them, from serving as prey for higher trophic levels to producing fish meal and oil. Forage fish have a consumption value for humans and cultural importance to many societies. Forage fish have faced constant natural and anthropogenic threats in the past, resulting in numerous fish collapses which subsequently impacted their predators. The economic benefit provided by forage fish has been estimated to be approximately $ 18.7 billion per annum. An introspection of the data on ecosystem services revealed lack of data on regulating and cultural services, eventually leading to a monetary underestimation and their commercial prioritization over the wider benefits they provide. [ABSTRACT FROM AUTHOR]

Abstract Background The hydrogeological history of Lake Tanganyika paints a complex image of several colonization and adaptive radiation events. The initial basin was formed around 9–12 million years ago (MYA) from the predecessor of the Malagarasi–Congo River and only 5–6 MYA, its sub-basins fused to produce the clear, deep waters of today. Next to the well-known radiations of cichlid fishes, the lake also harbours a modest clade of only two clupeid species, Stolothrissa tanganicae and Limnothrissa miodon. They are members of Pellonulini, a tribe of clupeid fishes that mostly occur in freshwater and that colonized West and Central-Africa during a period of high sea levels during the Cenozoic. There is no consensus on the phylogenetic relationships between members of Pellonulini and the timing of the colonization of Lake Tanganyika by clupeids. Results We use short-read next generation sequencing of 10X Chromium libraries to sequence and assemble the full mitochondrial genomes of S. tanganicae and L. miodon. We then use Maximum likelihood and Bayesian inference to place them into the phylogeny of Pellonulini and other clupeiforms, taking advantage of all available full mitochondrial clupeiform genomes. We identify Potamothrissa obtusirostris as the closest living relative of the Tanganyika sardines and confirm paraphyly for Microthrissa. We estimate the divergence of the Tanganyika sardines around 3.64 MYA [95% CI: 0.99, 6.29], and from P. obtusirostris around 10.92 MYA [95% CI: 6.37–15.48]. Conclusions These estimates imply that the ancestor of the Tanganyika sardines diverged from a riverine ancestor and entered the proto-lake Tanganyika around the time of its formation from the Malagarasi–Congo River, and diverged into the two extant species at the onset of deep clearwater conditions. Our results prompt a more thorough examination of the relationships within Pellonulini, and the new mitochondrial genomes provide an important resource for the future study of this tribe, e.g. as a reference for species identification, genetic diversity, and macroevolutionary studies.

We present a genome assembly from an individual Sardina pilchardus (the sardine; Chordata; Actinopteri; Clupeiformes; Clupeidae). The genome sequence spans 869.40 megabases. Most of the assembly is scaffolded into 24 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 17.57 kilobases in length., Competing Interests: No competing interests were disclosed., (Copyright: © 2024 Brittain R et al.)

The Atlantic anchoveta, Cetengraulis edentulus (Cuvier, 1829) is one of the most commercially important fish species in the littoral of Brazil. The present study evaluates the parasitic fauna of this engraulid fish from the southeastern Brazilian coast. Between October 2019 and March 2020, a total of 100 specimens of C. edentulus from the Sepetiba Bay, Rio de Janeiro, Brazil (22°57'44"S; 43°52'28"W), were examined. Eighty-five specimens of C. edentulus were parasitized by at least one species of metazoan, with a mean of 4.32 ± 6.12 parasites/fish. Eleven species of parasites were collected: five digeneans, two monogeneans, two copepods, one isopod and one nematode. The nematode Hysterothylacium sp. was the most abundant and dominant species, representing 51.85% of the metazoan parasites collected, showing positive correlation with the host's total length and parasite abundance and prevalence. The mean abundance and prevalence of Hysterothylacium sp. was significantly higher in female hosts. One pair of larval endoparasites showed positive covariation. Centengraulis edentulus represents a new host record for nine species of parasites. A dominance of endoparasitic larval stages is documented in the parasite community of C. edentulus. This may be a function of the feeding habits of engraulid fish, which feed mainly on zooplanktonic organisms. It may also have to do with to the fact that C. edentulus is the intermediate and/or paratenic host of fish parasites, birds, and marine mammals. [ABSTRACT FROM AUTHOR]

Copyright of Iheringia. Série Zoologia is the property of Fundacao Zoobotanica do Rio Grande do Sul and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

In this study, the complete mitochondrial genome of Ilisha striatula is presented, and we also discussed its mitochondrial characteristics. The full length of the mitochondrial genome was 16,847 bp, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs, 22 transfer RNA genes, one non-coding control region (CR), and one origin of replication on the light-strand. The total nucleotide composition of the mitochondrial genome was 31.11% A, 24.62% T, 29.10% C, 15.16% G, and AT was 55.73%. The phylogenetic tree based on the ML method supported the placement of I. striatula in a close relationship with I. elongata. These data contribute to a better understanding of the systematics of the Pristigasteridae.

Relationships between fish length and otolith length, width and mass were examined in the Australian anchovy Engraulis australis (White, 1790) recovered from the food of Gannet examined from colonies at islands of Horuhoru Rock and Mahuki Islands in the Hauraki Gulf, New Zealand. The relationships between otolith length-fish total length (TL), otolith-weight-TL, and otolith-width-TL were investigated by means of non-linear regression models (TL = 0.54 OL 16.86, TL = 4.39 OW 7.61 and TL = 26.19 OWe 2.2). This study characterizes the first reference available on the relationship of fish size and otolith size and weight for E. australis obtained from bird's food in the Pacific Ocean region. [ABSTRACT FROM AUTHOR]

Tenualosa ilisha is a popular anadromous and significant trans-boundary fish. For sustainable management and conservation of this fish, drawing an appropriate picture reflecting population status of this species is very essential based on their all-strategic habitats in Bangladesh. In this study, 139 samples from 18 sites were collected and cross-species gene enrichment method was applied. Like most of the Clupeiforms, nucleotide diversity of this shad was very low (0.001245–0.006612). Population differences between most of the locations were low and not significant (P > 0.05). However, P values of a few locations were significant (P < 0.05) but their pairwise FST values were very poor (0.0042–0.0993), which is inadequate to recognize any local populations. Our study revealed that the presence of a single population in the Bangladesh waters with some admixtured individuals, which may contain partial genes from other populations. Most of the individuals were admixed without showing any precise grouping in the ML IQtree and Network, which might due to their highly migratory nature. Fishes from haors and small coastal rivers were not unique and no genetic differences between migratory cohorts. The hilsa shad fishery should be managed considering it as a single panmictic population in Bangladesh with low genetic diversity. [ABSTRACT FROM AUTHOR]

Fishery statistics are mainly made by recording the popular fish names, which is later translated into scientific identification. However, these names often either refer to a species group and/or vary along their distribution, increasing identification uncertainty. Species that have cultural value for traditional communities are known as culturally important species (CIS). Herein, we assessed Fishers' Ecological Knowledge to investigate small-silvery herrings (ginga) used as part of a traditional dish "ginga com tapioca", that is recognized as a cultural heritage in the Brazilian northeastern. Through 103 interviews conducted in six communities in three states, we determined that ginga, although a name known elsewhere, is only traded as such in the metropolitan area of Natal. In this region, ginga is caught with drift net and deemed profitable by fishers. We identified both over- and under-differentiation, with ginga recognized by fishers as five, and sold as three main species, namely Opisthonema oglinum, Harengula sp., and Lile piquiting. The larger specimens of two of those species (O. oglinum and Harengula sp.) were also traded as sardines. We found that most individuals sold as ginga were juveniles, which might impact the recruitment of some fish species. Due to its unique cultural relevance to the local community of Natal, ginga could be considered a CIS, which could aid future management or conservation measures. [ABSTRACT FROM AUTHOR]

Unlike their marine counterparts, tropical freshwater clupeids receive little scientific attention. However, they sustain important fisheries that may be of (inter)national commercial interest. Africa harbours over 20 freshwater clupeid species within Pellonulini. Recent research suggests their most abundant parasites are gill-infecting monogenean flatworms within Kapentagyrus. After inspecting specimens of 12 freshwater clupeids from West and Central Africa, mainly sourced in biodiversity collections, we propose 11 new species of Kapentagyrus, which we describe using their haptoral and genital morphology. Because of their high morphological similarity, species delineation relies mostly on the morphometrics of anchors and hooks. Specifically, earlier, molecular taxonomic work indicated that the proportion between the length of the anchor roots, and between the hook and anchor length, is diagnostic. On average, about one species of Kapentagyrus exists per pellonuline species, although Pellonula leonensis harbours four species and Microthrissa congica two, while Microthrissa moeruensis and Potamothrissa acutirostris share a gill monogenean species. This study more than quadruples the number of known species of Kapentagyrus, also almost quadrupling the number of pellonuline species of which monogeneans are known. Since members of Kapentagyrus are informative about their hosts’ ecology, evolutionary history, and introduction routes, this enables a parasitological perspective on several data-poor African fisheries.

Stock assessment is necessary to understand the status of fishery stocks. However, for the data-poor fishery, it is very challenging to assess the stock status. The length-based Bayesian biomass (LBB) technique is one of the most powerful methods to assess the data-poor fisheries resources that need simple length frequency (LF) data. Addressing the present gap, this study aimed to assess the stock status of three sardines (Sardinella fimbriata, Dussumieria acuta, and D. elopsoides) in the Bay of Bengal (BoB), Bangladesh using the LBB method. The estimated relative biomass for S. fimbriata was B/B0 < BMSY/B0, indicating the overfished biomass, while the assessed B/B0 > BMSY/B0 for D. acuta and D. elopsoides indicates healthy biomass. Additionally, for S. fimbriata, the length at first landing was smaller than the optimum length at first landing (Lc < Lc_opt), indicating an overfishing status, but a safe fishing status was assessed for D. acuta and D. elopsoides (Lc > Lc_opt). Therefore, increasing the mesh size of fishing gears may help to ensure the long-term viability of sardine populations in the BoB, Bangladesh.

In this study, the complete mitochondrial genome of Ilisha striatula is presented, and we also discussed its mitochondrial characteristics. The full length of the mitochondrial genome was 16,847 bp, including 13 protein-coding genes (PCGs), 2 ribosomal RNAs, 22 transfer RNA genes, one non-coding control region (CR), and one origin of replication on the light-strand. The total nucleotide composition of the mitochondrial genome was 31.11% A, 24.62% T, 29.10% C, 15.16% G, and AT was 55.73%. The phylogenetic tree based on the ML method supported the placement of I. striatula in a close relationship with I. elongata. These data contribute to a better understanding of the systematics of the Pristigasteridae. [ABSTRACT FROM AUTHOR]

Background. The poorly known anchovy Stolephorus nelsoni Wongratana, 1987 (Engraulidae), previously known only from the type specimens from Australia, is redescribed and its validity confirmed, on the basis of the holotype, paratype, and 15 additional specimens from Indonesia and Australia. Similar to Stolephorus brachycephalus Wongratana, 1983 in sharing the maxilla reaching more or less to the posterior border of opercle, a predorsal-fin scute absent and the preopercle rounded, the specific distinctiveness of S. nelsoni and differences between the two species have remained unclear. This study sought to confirm the validities of the two species and the distributional range of S. nelsoni. Materials and methods. Seventeen and 9 specimens of S. nelsoni and S. brachycephalus, respectively, including the holotype of each, were examined morphologically, counts and proportional measurements following Hata and Motomura (2017). Results. Comparisons of S. nelsoni with S. brachycephalus revealed the former to have 12-14 (mode 13) branchiostegal rays [vs. 10-11 (11)], 15-17 branched anal fin rays [vs. 20-22 (20)] and relatively fewer gill rakers [37-43 (39, 40) on the first gill arch vs. 35-37 (35)]. Stolephorus nelsoni also differed from S. brachycephalus in body depth [21.7%-23.7% (mean 22.6%) of standard length vs. 18.2%-20.3% (19.1%)], anal-fin base length [16.1%-19.3% (17.6%) vs. 21.6%-24.4% (23.2%)], caudal-peduncle length [15.7%-21.7% (18.8%) vs. 12.6%-15.2% (14.1%)] and snout length [4.5%-5.5% (5.1%) vs. 3.6%-4.3% (4.0%)]. Conclusion. The validities of both species were confirmed, Indonesian examples of S. nelsoni being the first known records of the species outside Australian waters. [ABSTRACT FROM AUTHOR]

Copyright of Brazilian Journal of Biology is the property of Instituto Internacional de Ecologia and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The anchovy, Engraulis ringens, is an economically valuable fish, and the most heavily exploited resource in the Humboldt Current System. To analyze its genetic structure and diversity, microsatellite markers were developed using 454 pyrosequencing. A total of 27,352 reads containing di-, tri-, tetra-, penta-, and hexanucleotide microsatellite repeat units were identified from 136,537 reads. Among 80 loci containing more than six repeat motifs, 32 primer sets (40%) produced reproducible PCR products, and all of these loci were polymorphic. Some loci showed deviations from HWE and possible null allele's presence, results of an excess of homozygotes. In an analysis of 45 individuals from one E. ringens population, the number of alleles per locus ranged from 2 to 33, observed heterozygosity ranged from 0.171 to 0.976, and the probability of identity values ranged from 0.006 to 0.513. These microsatellites will be useful for numerous ecological studies focused on this important pelagic fish; including the examination of population genetic structure, estimating effective population size and providing information for fisheries management. [ABSTRACT FROM AUTHOR]

Abstract We evaluated the reproductive dynamics of two fish species, Lycengraulis grossidens and Platanichthys platana, in a subtropical freshwater coastal lagoon (Peri Lagoon) in Brazil. Samples were collected from nine sites every two months from June 2008 to April 2012. Different fishing methods were used to capture larvae, juveniles, and adults. Limnological variables were obtained using multiparameter probe. More females than males were collected of both fish species and the chi-square test (χ2) was used to confirm that the sex ratio was female-biased. Large numbers of maturing and mature fishes were observed in almost every sampling month. The gonadosomatic index (GSI) of L. grossidens was the highest in August, October, and December for females and in October for males, and no significant difference was found across years. The GSI of P. platana showed no significant difference across months for either sex; however, significant differences were recorded in year three (June 2010-April 2011) and year four (June 2011-April 2012) for females and in year three (June 2010-April 2011) for males. For both species, GSI was negatively correlated with temperature and water level. L. grossidens larvae were more abundant in October 2010, showing a positive correlation with water transparency, whereas P. platana larvae were more abundant in June 2011, showing a positive correlation with water transparency and negative correlation with temperature and precipitation. Both species were represented by different stages, including larvae, which confirm that these species reproduce in Peri Lagoon. Reproduction was more pronounced in autumn and winter; however, reproductive activity was evident throughout the sampling period. In conclusion, our results show that abiotic factors strongly influence the temporal pattern of reproductive activity and larval assemblages of both L. grossidens and P. platana in Peri Lagoon, Brazil.

Neuromast morphology and distribution are characterized during early ontogeny of anchoveta (Engraulis ringens) and common sardine (Strangomera bentincki). Although both species share morphological features, they show several differences during their early ontogeny, such as size at hatching and yolk absorption. Larvae were obtained from incubation of planktonic eggs (at 12°C), collected during the spawning season 2001 (August-September) at Coliumo Bay. The neuromasts were observed from hatching to 25 days, and the pattern of neuromast appearance, in newly hatched larva, until yolk absorption, was determined using Janus Green staining and scanning electronic microscope. Results showed a similar pattern of neuromast development in both species. At hatching, two pairs of neuromasts were observed in the cephalic area and 8-9 in the rest of the body, which increased to 19 pairs and to 30-39 pairs at a larval size of 11 mm, respectively. On the average, 12 hair cells per neuromast were counted, with little variation among neuromasts. The polarity of these hair cells was closest to multiple polarity. Neuromast positioning for both species, anchoveta and common sardine larvae, are similar to those of Engraulis mordax and Clupea harengus, respectively. The similar development pattern of these species seems to be related to similar functional constraints and close taxonomic affinity.

Microplastics (MPs) are thought to be ingested by a wide range of marine organisms before being excreted. However, several studies in marine organisms from different taxa have shown that MPs and nanoplastics could be translocated in other organs. In this study, we investigated the presence of MPs in the livers of commercial zooplanktivorous fishes collected in the field. The study focuses mainly on the European anchovy Engraulis encrasicolus but concerns also the European pilchard Sardina pilchardus and the Atlantic herring Clupea harengus . Two complementary methodologies were used to attest the occurrence of MPs in the hepatic tissue and to exclude contamination. 1) MPs were isolated by degradation of the hepatic tissue. 2) Cryosections were made on the livers and observed in polarized light microscopy. Both methods separately revealed that MPs, mainly polyethylene (PE), were translocated into the livers of the three clupeid species. In anchovy, 80 per cent of livers contained relatively large MPs that ranged from 124 μm to 438 μm, showing a high level of contamination. Two translocation pathways are hypothesized: (i) large particles found in the liver resulted from the agglomeration of smaller pieces, and/or (ii) they simply pass through the intestinal barrier. Further studies are however required to understand the exact process. [ABSTRACT FROM AUTHOR]

The fish family Dussumieriidae (suborder Clupeoidei), commonly called round herrings, is traditionally considered to be a key taxon for understanding the evolution of the Clupeoidei because some of its morphological characteristics have been interpreted as being either derived or primitive, such as the nearly complete absence of abdominal scutes. Recent molecule-based studies showed that the Dussumieriidae is likely not a monophyletic group. None of those studies, however, included the genus Dussumieria (rainbow sardines) which is the type genus of the family Dussumieriidae. Herein, we investigated the phylogenetic position of Dussumieria within the Clupeoidei, using a dataset of complete mitogenomic sequences, including five newly determined using high-throughput sequencing technology. In the inferred phylogenetic reconstructions, the Dussumieriidae was never recovered as monophyletic, and Dussumieria was not exclusively related to any other of the three dussumieriid genera. Although the position of Dussumieria is not fully resolved, this genus represents a major evolutionary lineage within the Clupeoidei, along with the Engraulidae, Pristigasteridae, Clupeinae, Etrumeus , and two unnamed clades, one containing the Chirocentridae and Spratelloidinae and the other containing the Ehiravinae, Dorosomatinae, and Alosinae. Our results allow some comments regarding the early evolution of the Clupeoidei. In particular, they strongly support the hypothesis that the W-shaped pelvic scute does not represent a good phylogenetic character within the Clupeoidei as either it is primitive or, alternatively, it has independently evolved several times. [ABSTRACT FROM AUTHOR]

This note demonstrates the use of a DNA barcoding methodology in confirming new occurrence records of Pellona castelnaeana and Pellona flavipinnis in the Branco River sub-basin. The DNA barcode result was verified by identification based on morphological characters of both species. Thus, these records increase the species' ranges by more than 600 km in the Amazon and show evidence of high genetic variability in P. flavipinnis. [ABSTRACT FROM AUTHOR]

A single specimen of Encrasicholina macrocephala Hata & Motomura, 2015 (58.7 mm in standard length), collected in Somalia in 1986, is the first record of the species from Somalian waters. This species is otherwise known only from the type specimens, collected in Djibouti and Oman. [ABSTRACT FROM AUTHOR]