2,798 results on '"Bohle A"'
Search Results
2. The financial well-being of fruit farmers in Chile and Tunisia depends more on social and geographical factors than on climate change
- Author
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Obster, Fabian, Bohle, Heidi, and Pechan, Paul M.
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- 2024
- Full Text
- View/download PDF
3. Using interpretable boosting algorithms for modeling environmental and agricultural data
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Obster, Fabian, Heumann, Christian, Bohle, Heidi, and Pechan, Paul
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Statistics - Machine Learning ,Computer Science - Machine Learning ,Statistics - Applications - Abstract
We describe how interpretable boosting algorithms based on ridge-regularized generalized linear models can be used to analyze high-dimensional environmental data. We illustrate this by using environmental, social, human and biophysical data to predict the financial vulnerability of farmers in Chile and Tunisia against climate hazards. We show how group structures can be considered and how interactions can be found in high-dimensional datasets using a novel 2-step boosting approach. The advantages and efficacy of the proposed method are shown and discussed. Results indicate that the presence of interaction effects only improves predictive power when included in two-step boosting. The most important variable in predicting all types of vulnerabilities are natural assets. Other important variables are the type of irrigation, economic assets and the presence of crop damage of near farms.
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- 2023
4. Th17 cells target the metabolic miR‐142‐5p–succinate dehydrogenase subunit C/D (SDHC/SDHD) axis, promoting invasiveness and progression of cervical cancers
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Maike Pohlers, Selina Gies, Tanja Taenzer, Russalina Stroeder, Laura Theobald, Nicole Ludwig, Yoo‐Jin Kim, Rainer Maria Bohle, Erich Franz Solomayer, Eckart Meese, Martin Hart, and Barbara Walch‐Rückheim
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cervical cancers ,metastases ,miR‐142‐5p ,succinate dehydrogenase complex ,T‐helper‐17 cells ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
During cervical carcinogenesis, T‐helper (Th)‐17 cells accumulate in the peripheral blood and tumor tissues of cancer patients. We previously demonstrated that Th17 cells are associated with therapy resistance as well as cervical cancer metastases and relapse; however, the underlying Th17‐driven mechanisms are not fully understood. Here, using microarrays, we found that Th17 cells induced an epithelial‐to‐mesenchymal transition (EMT) phenotype of cervical cancer cells and promoted migration and invasion of 2D cultures and 3D spheroids via induction of microRNA miR‐142‐5p. As the responsible mechanism, we identified the subunits C and D of the succinate dehydrogenase (SDH) complex as new targets of miR‐142‐5p and provided evidence that Th17–miR‐142‐5p‐dependent reduced expression of SDHC and SDHD mediated enhanced migration and invasion of cancer cells using small interfering RNAs (siRNAs) for SDHC and SDHD, and miR‐142‐5p inhibitors. Consistently, patients exhibited high levels of succinate in their serum associated with lymph node metastases and diminished expression of SDHD in patient biopsies correlated with increased numbers of Th17 cells. Correspondingly, a combination of weak or negative SDHD expression and a ratio of Th17/CD4+ T cells > 43.90% in situ was associated with reduced recurrence‐free survival. In summary, we unraveled a previously unknown molecular mechanism by which Th17 cells promote cervical cancer progression and suggest evaluation of Th17 cells as a potential target for immunotherapy in cervical cancer.
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- 2024
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5. Factors other than climate change are currently more important in predicting how well fruit farms are doing financially
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Obster, Fabian, Bohle, Heidi, and Pechan, Paul M.
- Subjects
Computer Science - Machine Learning ,Statistics - Applications ,Statistics - Other Statistics - Abstract
Machine learning and statistical modeling methods were used to analyze the impact of climate change on financial wellbeing of fruit farmers in Tunisia and Chile. The analysis was based on face to face interviews with 801 farmers. Three research questions were investigated. First, whether climate change impacts had an effect on how well the farm was doing financially. Second, if climate change was not influential, what factors were important for predicting financial wellbeing of the farm. And third, ascertain whether observed effects on the financial wellbeing of the farm were a result of interactions between predictor variables. This is the first report directly comparing climate change with other factors potentially impacting financial wellbeing of farms. Certain climate change factors, namely increases in temperature and reductions in precipitation, can regionally impact self-perceived financial wellbeing of fruit farmers. Specifically, increases in temperature and reduction in precipitation can have a measurable negative impact on the financial wellbeing of farms in Chile. This effect is less pronounced in Tunisia. Climate impact differences were observed within Chile but not in Tunisia. However, climate change is only of minor importance for predicting farm financial wellbeing, especially for farms already doing financially well. Factors that are more important, mainly in Tunisia, included trust in information sources and prior farm ownership. Other important factors include farm size, water management systems used and diversity of fruit crops grown. Moreover, some of the important factors identified differed between farms doing and not doing well financially. Interactions between factors may improve or worsen farm financial wellbeing.
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- 2023
6. The Tools for Integrated Management of Childhood Illness (TIMCI) study protocol: a multi-country mixed-method evaluation of pulse oximetry and clinical decision support algorithms
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Fenella Beynon, Hélène Langet, Leah F. Bohle, Shally Awasthi, Ousmane Ndiaye, James Machoki M’Imunya, Honorati Masanja, Susan Horton, Maymouna Ba, Silvia Cicconi, Mira Emmanuel-Fabula, Papa Moctar Faye, Tracy R. Glass, Kristina Keitel, Divas Kumar, Gaurav Kumar, Gillian A. Levine, Lena Matata, Grace Mhalu, Andolo Miheso, Deusdedit Mjungu, Francis Njiri, Elisabeth Reus, Michael Ruffo, Fabian Schär, Kovid Sharma, Helen L. Storey, Irene Masanja, Kaspar Wyss, Valérie D’Acremont, and TIMCI Collaborator Group
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hypoxaemia ,imci ,primary care ,quality of care ,cluster randomized controlled trial ,Public aspects of medicine ,RA1-1270 - Abstract
Effective and sustainable strategies are needed to address the burden of preventable deaths among children under-five in resource-constrained settings. The Tools for Integrated Management of Childhood Illness (TIMCI) project aims to support healthcare providers to identify and manage severe illness, whilst promoting resource stewardship, by introducing pulse oximetry and clinical decision support algorithms (CDSAs) to primary care facilities in India, Kenya, Senegal and Tanzania. Health impact is assessed through: a pragmatic parallel group, superiority cluster randomised controlled trial (RCT), with primary care facilities randomly allocated (1:1) in India to pulse oximetry or control, and (1:1:1) in Tanzania to pulse oximetry plus CDSA, pulse oximetry, or control; and through a quasi-experimental pre-post study in Kenya and Senegal. Devices are implemented with guidance and training, mentorship, and community engagement. Sociodemographic and clinical data are collected from caregivers and records of enrolled sick children aged 0–59 months at study facilities, with phone follow-up on Day 7 (and Day 28 in the RCT). The primary outcomes assessed for the RCT are severe complications (mortality and secondary hospitalisations) by Day 7 and primary hospitalisations (within 24 hours and with referral); and, for the pre-post study, referrals and antibiotic. Secondary outcomes on other aspects of health status, hypoxaemia, referral, follow-up and antimicrobial prescription are also evaluated. In all countries, embedded mixed-method studies further evaluate the effects of the intervention on care and care processes, implementation, cost and cost-effectiveness. Pilot and baseline studies started mid-2021, RCT and post-intervention mid-2022, with anticipated completion mid-2023 and first results late-2023. Study approval has been granted by all relevant institutional review boards, national and WHO ethical review committees. Findings will be shared with communities, healthcare providers, Ministries of Health and other local, national and international stakeholders to facilitate evidence-based decision-making on scale-up. Study registration: NCT04910750 and NCT05065320
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- 2024
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7. Carbapenem-resistant hypervirulent ST23 Klebsiella pneumoniae with a highly transmissible dual-carbapenemase plasmid in Chile
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Matías Gálvez-Silva, Patricio Arros, Camilo Berríos-Pastén, Aura Villamil, Paula I. Rodas, Ingrid Araya, Rodrigo Iglesias, Pamela Araya, Juan C. Hormazábal, Constanza Bohle, Yahua Chen, Yunn-Hwen Gan, Francisco P. Chávez, Rosalba Lagos, and Andrés E. Marcoleta
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Klebsiella pneumoniae ,Hypervirulence ,Carbapenem resistance ,Convergence ,Conjugative plasmids ,Mobile genetic elements ,Biology (General) ,QH301-705.5 - Abstract
Abstract Background The convergence of hypervirulence and carbapenem resistance in the bacterial pathogen Klebsiella pneumoniae represents a critical global health concern. Hypervirulent K. pneumoniae (hvKp) strains, frequently from sequence type 23 (ST23) and having a K1 capsule, have been associated with severe community-acquired invasive infections. Although hvKp were initially restricted to Southeast Asia and primarily antibiotic-sensitive, carbapenem-resistant hvKp infections are reported worldwide. Here, within the carbapenemase production Enterobacterales surveillance system headed by the Chilean Public Health Institute, we describe the isolation in Chile of a high-risk ST23 dual-carbapenemase-producing hvKp strain, which carbapenemase genes are encoded in a single conjugative plasmid. Results Phenotypic and molecular tests of this strain revealed an extensive resistance to at least 15 antibiotic classes and the production of KPC-2 and VIM-1 carbapenemases. Unexpectedly, this isolate lacked hypermucoviscosity, challenging this commonly used hvKp identification criteria. Complete genome sequencing and analysis confirmed the K1 capsular type, the KpVP-1 virulence plasmid, and the GIE492 and ICEKp10 genomic islands carrying virulence factors strongly associated with hvKp. Although this isolate belonged to the globally disseminated hvKp clonal group CG23-I, it is unique, as it formed a clade apart from a previously reported Chilean ST23 hvKp isolate and acquired an IncN KPC-2 plasmid highly disseminated in South America (absent in other hvKp genomes), but now including a class-I integron carrying bla VIM−1 and other resistance genes. Notably, this isolate was able to conjugate the double carbapenemase plasmid to an E. coli recipient, conferring resistance to 1st -5th generation cephalosporins (including combinations with beta-lactamase inhibitors), penicillins, monobactams, and carbapenems. Conclusions We reported the isolation in Chile of high-risk carbapenem-resistant hvKp carrying a highly transmissible conjugative plasmid encoding KPC-2 and VIM-1 carbapenemases, conferring resistance to most beta-lactams. Furthermore, the lack of hypermucoviscosity argues against this trait as a reliable hvKp marker. These findings highlight the rapid evolution towards multi-drug resistance of hvKp in Chile and globally, as well as the importance of conjugative plasmids and other mobile genetic elements in this convergence. In this regard, genomic approaches provide valuable support to monitor and obtain essential information on these priority pathogens and mobile elements.
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- 2024
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8. The financial well-being of fruit farmers in Chile and Tunisia depends more on social and geographical factors than on climate change
- Author
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Fabian Obster, Heidi Bohle, and Paul M. Pechan
- Subjects
Geology ,QE1-996.5 ,Environmental sciences ,GE1-350 - Abstract
Abstract Climate change has significant implications for economically important crops, yet understanding its specific impact on farm financial wellbeing remains a challenging task. In this study we present self-reported perceptions of fruit farmers about their financial well-being when confronted with different climate change factors. We employed a combination of supervised machine learning and statistical modelling methods to analyze the data. The data collection was conducted through face-to-face interviews with 801 randomly selected cherry and peach farmers in Tunisia and Chile. Specific climate change factors, namely increases in temperature and reductions in precipitation, can have a regionally discernible effect on the self-perceived financial wellbeing of fruit farmers. This effect is less pronounced in Tunisia than in Chile. However, climate change is of lessor importance in predicting farm financial wellbeing, particularly for farms already doing well financially. Social assets, which include reliance on and trust in information sources, community and science, play an important role in increasing the probability of fruit farm financial wellbeing in both Tunisia and Chile. However, the most influential predictive factors differ between the two countries. In Chile, the location of the farm is the primary determinant of financial wellbeing, while in Tunisia it was the presence of social assets.
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- 2024
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9. A/B/n Testing with Control in the Presence of Subpopulations
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Russac, Yoan, Katsimerou, Christina, Bohle, Dennis, Cappé, Olivier, Garivier, Aurélien, and Koolen, Wouter
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Statistics - Machine Learning ,Computer Science - Machine Learning - Abstract
Motivated by A/B/n testing applications, we consider a finite set of distributions (called \emph{arms}), one of which is treated as a \emph{control}. We assume that the population is stratified into homogeneous subpopulations. At every time step, a subpopulation is sampled and an arm is chosen: the resulting observation is an independent draw from the arm conditioned on the subpopulation. The quality of each arm is assessed through a weighted combination of its subpopulation means. We propose a strategy for sequentially choosing one arm per time step so as to discover as fast as possible which arms, if any, have higher weighted expectation than the control. This strategy is shown to be asymptotically optimal in the following sense: if $\tau_\delta$ is the first time when the strategy ensures that it is able to output the correct answer with probability at least $1-\delta$, then $\mathbb{E}[\tau_\delta]$ grows linearly with $\log(1/\delta)$ at the exact optimal rate. This rate is identified in the paper in three different settings: (1) when the experimenter does not observe the subpopulation information, (2) when the subpopulation of each sample is observed but not chosen, and (3) when the experimenter can select the subpopulation from which each response is sampled. We illustrate the efficiency of the proposed strategy with numerical simulations on synthetic and real data collected from an A/B/n experiment.
- Published
- 2021
10. Are Both I-Deals? The Mediating Role of I-Task and I-Incentive in the Relationship between Supervisor Support and Employees’ Silence and Voice
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Sergio López Bohle, Maria José Chambel, Yannick Griep, Felipe Muñoz Medina, and Hugo Zúñiga Quijada
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History of scholarship and learning. The humanities ,AZ20-999 ,Social Sciences - Abstract
Informed by Social Exchange Theory, this study has developed a mediation model that explains the role of I-deals in the relationship between perceived supervisor support and employees’ discretionary behaviors (i.e., voice and silence). Using a sample of 140 Chile employees, results from our structural equation modeling, indicated that the relationship between supervisor support and employees’ voice (positive) and silence (negative) was mediated by task I-deals. However, we found that the relationship between supervisor support and employees’ voice (negative) was mediated by task I-incentive while this type of I-deals did not mediate the relationship between supervisor support and employees’ silence. This research expands the I-deals literature by focusing on the provision of I-deals to their subordinates and by analyzing the outcomes of incentive I-deals and task I-deals to employees’ discretionary behaviors. Supervisors and HR departments might utilize task I-deals to help facilitate desirable employee outcomes, namely more voice and less silence.
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- 2024
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11. Regional and interhemispheric differences of neuronal representations in dentate gyrus and CA3 inferred from expression of zif268
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Lars-Patrick Schmill, Katharina Bohle, Niels Röhrdanz, Thomas Schiffelholz, Kira Balueva, and Peer Wulff
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Medicine ,Science - Abstract
Abstract The hippocampal formation is one of the best studied brain regions for spatial and mnemonic representations. These representations have been reported to differ in their properties for individual hippocampal subregions. One approach that allows the detection of neuronal representations is immediate early gene imaging, which relies on the visualization of genomic responses of activated neuronal populations, so called engrams. This method permits the within-animal comparison of neuronal representations across different subregions. In this work, we have used compartmental analysis of temporal activity by fluorescence in-situ hybridisation (catFISH) of the immediate early gene zif268/erg1 to compare neuronal representations between subdivisions of the dentate gyrus and CA3 upon exploration of different contexts. Our findings give an account of subregion-specific ensemble sizes. We confirm previous results regarding disambiguation abilities in dentate gyrus and CA3 but in addition report novel findings: Although ensemble sizes in the lower blade of the dentate gyrus are significantly smaller than in the upper blade both blades are responsive to environmental change. Beyond this, we show significant differences in the representation of familiar and novel environments along the longitudinal axis of dorsal CA3 and most interestingly between CA3 regions of both hemispheres.
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- 2023
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12. Science Mapping to study academic knowledge circulation
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Cortes, Julian D., Chinchilla-Rodriguez, Zaida, and Bohle-Karbonell, Katerina
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Computer Science - Digital Libraries - Abstract
The application of mathematics and statistical methods to scholarly communication: scientometrics, has facilitated the systematic analysis of the modern digital tide of literature. This chapter reviews three of such applications: coauthorship, bibliographic coupling, and coword networks. It also presents an exploratory case of study for the knowledge circulation literature. It was found a diverse geographical production, mainly in the Global North and Asian institutions with significant intermediation of universities from USA, Colombia, and Japan. The research fronts identified were related to science and medicine's history and philosophy; education, health, policy studies; and a set of interdisciplinary topics. Finally, the knowledge pillars were comprised of urban planning policy, economic geography, and historical and theoretical perspectives in the Netherlands and Central Europe; globalization and science, technology, and innovation and historical and institutional frameworks in the UK; and cultural and learning studies in the XXI century.
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- 2021
13. Mission Statements in Universities: Readability and performance
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Cortes, Julian D., Rivera, Liliana, and Carbonell, Katerina Bohle
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Economics - General Economics - Abstract
The mission statement(s) (MS) is one of the most-used tools for planning and management. Universities worldwide have implemented MS in their knowledge planning and management processes since the 1980s. Research studies have extensively explored the content and readability of MS and its effect on performance in firms, but their effect on public or nonprofit institutions such as universities has not been scrutinized with the same intensity. This study used Gunning's Fog Index score to determine the readability of a sample of worldwide universities' MS and two rankings, i.e., Quacquarelli Symonds World University Ranking and SCImago Institutions Rankings, to determine their effect on performance. No significant readability differences were identified in regions, size, focus, research type, age band, or status. Logistic regression (cumulative link model) results showed that variables, such as universities' age, focus, and size, have more-significant explanatory power on performance than MS readability.
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- 2021
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14. Innovation for Sustainability in the Global South: Bibliometric findings from management & business and STEM (Science, Technology, Engineering and Mathematics) fields in developing countries
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Cortes, Julian D., Guix, Mireia, and Carbonell, Katerina Bohle
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Computer Science - Digital Libraries - Abstract
Research on innovation and sustainability is prolific but fragmented. This study integrates the research on innovation in management and business and STEM fields for sustainability in a unified framework for the case of developing countries (i.e., the Global South). It presents and discusses the output, impact, and structure of such research based on a sample of 14,000+ articles and conference proceedings extracted from the bibliographic database Scopus. The findings reveal research output inflections after global announcements such as UN-Earth Summits. The study also reveals the indisputable leadership of China in overall output and research agenda-setting. Nonetheless, countries such as India, Mexico, and Nigeria are either more efficient or impactful. GS research published in highly reputable journals is still scarce but increasing modestly. Central topic clusters (e.g., knowledge management) remain peripheral to the global Sustainable Development Goals (SDGs) research landscape. Finally, academic-corporate collaboration is in its infancy and limited to particular economic sectors: energy, pharmaceuticals, and high-tech.
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- 2021
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15. Et tu Brute? The Roles of Subordinate–Supervisor Similarities on the Relationship between Abusive Supervision and Employee Silence Behavior: A Study from the Subordinates’ Perspectives
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Pınar Bayhan Karapinar, Ozge Tayfur Ekmekci, Selin Metin Camgoz, Sergio López Bohle, and Eren Miski Aydin
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abusive supervision ,employee silence behavior ,gender similarity ,perceived subordinate–supervisor similarity ,relational demographic approach ,Psychology ,BF1-990 - Abstract
The current study examined the moderating effects of subordinate–supervisor similarities on abusive supervision and employee silence relationships. We addressed the question of whether employees’ silence reactions are alleviated or aggravated when the abuse comes from a supervisor who shares a similar gender and other sociodemographic attributes with the employee. The results indicated that abusive supervision led to more silence behavior and supported the moderating effect of perceived sociodemographic similarity on this relationship. However, regardless of gender similarities with their supervisors, the findings postulated that employees experiencing abusive supervision were more likely to remain silent at work. When there is a perceived sociodemographic similarity between the employee and the supervisor, abusive supervision has been found to have a harsher influence on employee’s silence behavior. These findings help us better understand the antecedents of employee silence behavior and provide important implications for subordinate–supervisor similarity dynamics in exposure to abusive supervision.
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- 2024
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16. Characterizing a novel antimicrobial molecule effective for drug-resistant pathogens and bacterial biofilm that augments keratinocyte migration
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Maksimoska, Vida, Goodall, Carlie, Halder, Viola, Agyare-Tabbi, Michelle, Notarandrea-Alfonzo, Johanny, López, Danae Guerra, Shapiro, Rebecca S., Bohle, Scott, Khursigara, Cezar, Precht, Rod, Spina, Carla Jehan, and Szaszi, Katalin
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- 2024
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17. Different populations of A(H1N1)pdm09 viruses in a patient with hemolytic-uremic syndrome
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Fu, Yuguang, Wedde, Marianne, Smola, Sigrun, Oh, Djin-Ye, Pfuhl, Thorsten, Rissland, Jürgen, Zemlin, Michael, Flockerzi, Fidelis A., Bohle, Rainer M., Thürmer, Andrea, Duwe, Susanne, Biere, Barbara, Reiche, Janine, Schweiger, Brunhilde, Mache, Christin, Wolff, Thorsten, Herrler, Georg, and Dürrwald, Ralf
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- 2024
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18. Chloroplasts lacking class I glutaredoxins are functional but show a delayed recovery of protein cysteinyl redox state after oxidative challenge
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Bohle, Finja, Rossi, Jacopo, Tamanna, Sadia S., Jansohn, Hannah, Schlosser, Marlene, Reinhardt, Frank, Brox, Alexa, Bethmann, Stephanie, Kopriva, Stanislav, Trentmann, Oliver, Jahns, Peter, Deponte, Marcel, Schwarzländer, Markus, Trost, Paolo, Zaffagnini, Mirko, Meyer, Andreas J., and Müller-Schüssele, Stefanie J.
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- 2024
- Full Text
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19. Using interpretable boosting algorithms for modeling environmental and agricultural data
- Author
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Fabian Obster, Christian Heumann, Heidi Bohle, and Paul Pechan
- Subjects
Medicine ,Science - Abstract
Abstract We describe how interpretable boosting algorithms based on ridge-regularized generalized linear models can be used to analyze high-dimensional environmental data. We illustrate this by using environmental, social, human and biophysical data to predict the financial vulnerability of farmers in Chile and Tunisia against climate hazards. We show how group structures can be considered and how interactions can be found in high-dimensional datasets using a novel 2-step boosting approach. The advantages and efficacy of the proposed method are shown and discussed. Results indicate that the presence of interaction effects only improves predictive power when included in two-step boosting. The most important variable in predicting all types of vulnerabilities are natural assets. Other important variables are the type of irrigation, economic assets and the presence of crop damage of near farms.
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- 2023
- Full Text
- View/download PDF
20. Where does the EU-path on new genomic techniques lead us?
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Finja Bohle, Robin Schneider, Juliane Mundorf, Luise Zühl, Samson Simon, and Margret Engelhard
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new genomic techniques ,NGT plant ,GMO ,EC proposal ,EU regulation ,CRISPR-Cas ,Biotechnology ,TP248.13-248.65 ,Genetics ,QH426-470 - Abstract
Recently, the European Commission (EC) published a regulatory proposal on plants generated with new genomic techniques (NGTs) (5 July 2023). According to this proposal, NGT plant applications are categorized into category 1 NGT (NGT1) and category 2 NGT (NGT2) based on their molecular characteristics, which diverges from the current legislation centered around Directive 2001/18/EC. To demonstrate where the path of the proposal leads to in practice, we applied the proposed criteria for categorization to a list of NGT plant applications currently in the commercialization pipeline. Combining literature research and a descriptive statistical approach, we can show that 94% of the plant applications affected by the EC proposal, would be classified as NGT1 and thus would receive market approval without risk assessment, monitoring, and sufficient labeling provisions. The remaining 6% of applications would be classified as NGT2 plants, for which, in deviation from the current regulation, an adapted risk assessment is proposed. Screening of the intended traits in the pipeline highlights that certain NGT1 plants can pose similar environmental risks (e.g., invasiveness) to other genetically modified organisms (GMOs), as defined in Directive 2001/18/EC. For example, NGT1 applications based on RNA interference technology can exhibit insecticidal effects with potential side effects on non-target organisms (i.e., other insects). Our quantitative and case-specific elaboration of how the current EC regulatory proposal would affect the environment, health, and consumer protection will be informative for decision-makers and politicians.
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- 2024
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21. Different populations of A(H1N1)pdm09 viruses in a patient with hemolytic-uremic syndrome
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Yuguang Fu, Marianne Wedde, Sigrun Smola, Djin-Ye Oh, Thorsten Pfuhl, Jürgen Rissland, Michael Zemlin, Fidelis A. Flockerzi, Rainer M. Bohle, Andrea Thürmer, Susanne Duwe, Barbara Biere, Janine Reiche, Brunhilde Schweiger, Christin Mache, Thorsten Wolff, Georg Herrler, and Ralf Dürrwald
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A(H1N1)pdm09 virus ,Fatal influenza ,S263S/F (HA1) and H456H/Y (PB1) mutations ,Microbiology ,QR1-502 ,Other systems of medicine ,RZ201-999 - Abstract
Respiratory viral infections may have different impacts ranging from infection without symptoms to severe disease or even death though the reasons are not well characterized.A patient (age group 5–15 years) displaying symptoms of hemolytic uremic syndrome died one day after hospitalization. qPCR, next generation sequencing, virus isolation, antigenic characterization, resistance analysis was performed and virus replication kinetics in well-differentiated airway cells were determined.Autopsy revealed hemorrhagic pneumonia as major pathological manifestation. Lung samples harbored a large population of A(H1N1)pdm09 viruses with the polymorphism H456H/Y in PB1 polymerase. The H456H/Y viruses replicated much faster to high viral titers than upper respiratory tract viruses in vitro. H456H/Y-infected air-liquid interface cultures of differentiated airway epithelial cells did reflect a more pronounced loss of ciliated cells. A different pattern of virus quasispecies was found in the upper airway samples where substitution S263S/F (HA1) was observed.The data support the notion that viral quasispecies had evolved locally in the lung to support high replicative fitness. This change may have initiated further pathogenic processes leading to rapid dissemination of inflammatory mediators followed by development of hemorrhagic lung lesions and fatal outcome.
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- 2024
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22. Chloroplasts lacking class I glutaredoxins are functional but show a delayed recovery of protein cysteinyl redox state after oxidative challenge
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Finja Bohle, Jacopo Rossi, Sadia S. Tamanna, Hannah Jansohn, Marlene Schlosser, Frank Reinhardt, Alexa Brox, Stephanie Bethmann, Stanislav Kopriva, Oliver Trentmann, Peter Jahns, Marcel Deponte, Markus Schwarzländer, Paolo Trost, Mirko Zaffagnini, Andreas J. Meyer, and Stefanie J. Müller-Schüssele
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Glutaredoxin ,GRXC5 ,S-glutathionylation ,Redox-sensitive GFP ,EGSH ,Genetically encoded biosensor ,Medicine (General) ,R5-920 ,Biology (General) ,QH301-705.5 - Abstract
Redox status of protein cysteinyl residues is mediated via glutathione (GSH)/glutaredoxin (GRX) and thioredoxin (TRX)-dependent redox cascades. An oxidative challenge can induce post-translational protein modifications on thiols, such as protein S-glutathionylation. Class I GRX are small thiol-disulfide oxidoreductases that reversibly catalyse S-glutathionylation and protein disulfide formation. TRX and GSH/GRX redox systems can provide partial backup for each other in several subcellular compartments, but not in the plastid stroma where TRX/light-dependent redox regulation of primary metabolism takes place. While the stromal TRX system has been studied at detail, the role of class I GRX on plastid redox processes is still unknown. We generate knockout lines of GRXC5 as the only chloroplast class I GRX of the moss Physcomitrium patens.While we find that PpGRXC5 has high activities in GSH-dependent oxidoreductase assays using hydroxyethyl disulfide or redox-sensitive GFP2 as substrates in vitro, Δgrxc5 plants show no detectable growth defect or stress sensitivity, in contrast to mutants with a less negative stromal EGSH (Δgr1). Using stroma-targeted roGFP2, we show increased protein Cys steady state oxidation and decreased reduction rates after oxidative challenge in Δgrxc5 plants in vivo, indicating kinetic uncoupling of the protein Cys redox state from EGSH. Compared to wildtype, protein Cys disulfide formation rates and S-glutathionylation levels after H2O2 treatment remained unchanged. Lack of class I GRX function in the stroma did not result in impaired carbon fixation.Our observations suggest specific roles for GRXC5 in the efficient transfer of electrons from GSH to target protein Cys as well as negligible cross-talk with metabolic regulation via the TRX system. We propose a model for stromal class I GRX function in efficient catalysis of protein dithiol/disulfide equilibria upon redox steady state alterations affecting stromal EGSH and highlight the importance of identifying in vivo target proteins of GRXC5.
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- 2024
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23. A fundamental problem of hypothesis testing with finite inventory in e-commerce
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Bohle, Dennis, Marynych, Alexander, and Meiners, Matthias
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Mathematics - Probability ,Mathematics - Statistics Theory ,62F03, 62E20, 60F17 - Abstract
In this paper, we draw attention to a problem that is often overlooked or ignored by companies practicing hypothesis testing (A/B testing) in online environments. We show that conducting experiments on limited inventory that is shared between variants in the experiment can lead to high false positive rates since the core assumption of independence between the groups is violated. We provide a detailed analysis of the problem in a simplified setting whose parameters are informed by realistic scenarios. The setting we consider is a $2$-dimensional random walk in a semi-infinite strip. It is rich enough to take a finite inventory into account, but is at the same time simple enough to allow for a closed form of the false-positive probability. We prove that high false-positive rates can occur, and develop tools that are suitable to help design adequate tests in follow-up work. Our results also show that high false-negative rates may occur. The proofs rely on a functional limit theorem for the $2$-dimensional random walk in a semi-infinite strip., Comment: 23 pages, 8 figures
- Published
- 2020
24. Regional and interhemispheric differences of neuronal representations in dentate gyrus and CA3 inferred from expression of zif268
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Schmill, Lars-Patrick, Bohle, Katharina, Röhrdanz, Niels, Schiffelholz, Thomas, Balueva, Kira, and Wulff, Peer
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- 2023
- Full Text
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25. T-cell subset changes during the first year of pre-seasonal allergoid allergen-specific immunotherapy
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Reithofer, Manuel, Boell, Simone Lisa, Kitzmueller, Claudia, Horak, Fritz, Bohle, Barbara, and Jahn-Schmid, Beatrice
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- 2023
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26. Adoptive Cell Therapy in Mice Sensitized to a Grass Pollen Allergen
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Anna Marianne Weijler, Lisa Prickler, Verena Kainz, Eva Bergmann, Barbara Bohle, Heinz Regele, Rudolf Valenta, Birgit Linhart, and Thomas Wekerle
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cell therapy ,allergy ,Phl p 5 ,tolerance ,mouse model ,Immunologic diseases. Allergy ,RC581-607 - Abstract
The proportion of patients with type I allergy in the world population has been increasing and with it the number of people suffering from allergic symptoms. Recently we showed that prophylactic cell therapy employing allergen-expressing bone marrow (BM) cells or splenic B cells induced allergen-specific tolerance in naïve mice. Here we investigated if cell therapy can modulate an established secondary allergen-specific immune response in pre-immunized mice. We sensitized mice against the grass pollen allergen Phl p 5 and an unrelated control allergen, Bet v 1, from birch pollen before the transfer of Phl p 5-expressing BM cells. Mice were conditioned with several combinations of low-dose irradiation, costimulation blockade, rapamycin and T cell-depleting anti-thymocyte globulin (ATG). Levels of allergen-specific IgE and IgG1 in serum after cell transfer were measured via ELISA and alterations in cellular responses were measured via an in vitro proliferation assay and transplantation of Phl p 5+ skin grafts. None of the tested treatment protocols impacted Phl p 5-specific antibody levels. Transient low-level chimerism of Phl p 5+ leukocytes as well as a markedly prolonged skin graft survival were observed in mice conditioned with high numbers of Phl p 5+ BMC or no sensitization events between the day of cell therapy and skin grafting. The data presented herein demonstrate that a pre-existing secondary allergen-specific immune response poses a substantial hurdle opposing tolerization through cell therapy and underscore the importance of prophylactic approaches for the prevention of IgE-mediated allergy.
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- 2024
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27. Crafting Attributes of a Geological Now
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Martin Bohle
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anthropocene ,the evolution of knowledge ,borderline problems ,stratigraphy ,science and technology studies ,Dynamic and structural geology ,QE500-639.5 - Abstract
Taking an Earth Science framework as its point of departure, this paper delves into the sociocultural ramifications of two distinct geological interpretations—epoch and event—of the contested but widely acknowledged term “Anthropocene.” While the term has gained considerable traction for encapsulating planetary-scale anthropogenic changes (PSAC), its meanings are varied, spanning scientific, philosophical, and cultural discourses. Earth scientists often examine PSAC through the lens of their discipline, yet the complex sociocultural implications attached to such geoscientific concepts call for an interdisciplinary perspective. Introduced by Crutzen and Stoermer in 2000, the term “Anthropocene” is designed to account for the transformative impact of modern societies on Earth System dynamics. Presently, two opposing viewpoints exist within geological discourse to describe PSAC: the “Anthropocene-as-an-event” concept, which underscores the accretion of human-induced changes, and the “Anthropocene-as-an-epoch” concept, focusing on a substantial alteration in Earth System dynamics. Utilising Renn’s theory of “The Evolution of Knowledge,” the paper posits these concepts as scientific borderline problems, catalysts for epistemic inquiries, linked to specific “economies of knowledge.” The ensuing analysis accentuates the multidimensionality of articulating PSAC from an Earth Science viewpoint, asserting that it not only mandates understanding the geological dimensions but also calls for integrating sociocultural and philosophical contexts. The paper concludes that geological terminology should consider associated cultural contexts of Earth Science to establish leadership for vital epistemic concepts.
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- 2023
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28. Internal mammary artery injury complicating a Surfacer inside-out central venous catheterization
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Kihoon Bohle, BSc, Bright Benfor, MD, Simon J. Montelongo, DO, Dylan E. Brooks, MD, and Eric Peden, MD
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Inside-out ,Surfacer ,ESRD ,Central venous catheter ,TDC ,CVC complications ,Surgery ,RD1-811 ,Diseases of the circulatory (Cardiovascular) system ,RC666-701 - Abstract
We report the case of a near fatal arterial injury in a patient undergoing an inside-out catheter placement through an occluded central venous system using the Surfacer device (Bluegrass Vascular). The right internal mammary artery was inadvertently lacerated during the procedure, leading to cardiovascular collapse. The patient was rescued by transfusion, placement of a chest tube, and coil embolization of the right internal mammary artery. Postprocedure analysis of intraoperative cone beam computed tomography revealed that this injury was predictable on imaging, underscoring the need for advanced imaging guidance to enhance the safety of this procedure.
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- 2023
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29. Adoptive transfer of allergen-expressing B cells prevents IgE-mediated allergy
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Lisa Prickler, Ulrike Baranyi, Konstantinos Mengrelis, Anna Marianne Weijler, Verena Kainz, Bernhard Kratzer, Romy Steiner, Jasmin Mucha, Elisa Rudoph, Nina Pilat, Barbara Bohle, Herbert Strobl, Winfried Franz Pickl, Rudolf Valenta, Birgit Linhart, and Thomas Wekerle
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allergy ,prophylaxis ,tolerance ,cell therapy ,chimerism ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionProphylactic strategies to prevent the development of allergies by establishing tolerance remain an unmet medical need. We previously reported that the transfer of autologous hematopoietic stem cells (HSC) expressing the major timothy grass pollen allergen, Phl p 5, on their cell surface induced allergen-specific tolerance in mice. In this study, we investigated the ability of allergen-expressing immune cells (dendritic cells, CD4+ T cells, CD8+ T cells, and CD19+ B cells) to induce allergen-specific tolerance in naive mice and identified CD19+ B cells as promising candidates for allergen-specific cell therapy.MethodsFor this purpose, CD19+ B cells were isolated from Phl p 5-transgenic BALB/c mice and transferred to naive BALB/c mice, pre-treated with a short course of rapamycin and an anti-CD40L antibody. Subsequently, the mice were subcutaneously sensitized three times at 4-week intervals to Phl p 5 and Bet v 1 as an unrelated control allergen. Allergen-expressing cells were followed in the blood to monitor molecular chimerism, and sera were analyzed for Phl p 5- and Bet v 1-specific IgE and IgG1 levels by RBL assay and ELISA, respectively. In vivo allergen-induced lung inflammation was measured by whole-body plethysmography, and mast cell degranulation was determined by skin testing.ResultsThe transfer of purified Phl p 5-expressing CD19+ B cells to naive BALB/c mice induced B cell chimerism for up to three months and prevented the development of Phl p 5-specific IgE and IgG1 antibody responses for a follow-up period of 26 weeks. Since Bet v 1 but not Phl p 5-specific antibodies were detected, the induction of tolerance was specific for Phl p 5. Whole-body plethysmography revealed preserved lung function in CD19+ B cell-treated mice in contrast to sensitized mice, and there was no Phl p 5-induced mast cell degranulation in treated mice.DiscussionThus, we demonstrated that the transfer of Phl p 5-expressing CD19+ B cells induces allergen-specific tolerance in a mouse model of grass pollen allergy. This approach could be further translated into a prophylactic regimen for the prevention of IgE-mediated allergy in humans.
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- 2023
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30. T-cell subset changes during the first year of pre-seasonal allergoid allergen-specific immunotherapy
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Manuel Reithofer, Simone Lisa Boell, Claudia Kitzmueller, Fritz Horak, Barbara Bohle, and Beatrice Jahn-Schmid
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Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
Allergen-specific immunotherapy (AIT) is the only treatment for type I allergy, which achieves long-lasting effects. Repeated subcutaneous applications of allergen extracts cause a protective antibody response and an immune deviation of T cells. In AIT with allergoids, chemically modified allergen extracts are injected. During a so-called special pre-seasonal application scheme, after the initial phase of applying increased doses of allergoids is followed by natural allergen exposure as a maintenance phase. The effectiveness of allergoid vaccines has been described regarding the improvement of clinical symptoms and the development of protective humoral responses.In this longitudinal observational study, we sought to investigate changes at the T cell level in pre-seasonal AIT with allergoid. Different subsets within CD4+ and CD8+ T cells were monitored by flow cytometry in PBMC of patients known to possess protective antibody responses.Compared to before treatment, a small early boost among allergenic Th cells was observed after 4 months of AIT. In line, a slight Th2 bias was observed after 4 months within circulating T follicular T cells, Tfh and Tfc, representing pre-existing memory Th2 cells. Furthermore, it was demonstrated that responsiveness of CD8+ T cells to allergen stimulation decreased during the course of treatment. Apart from that, we found an influence of the meteorological season on the activation profile of Tfh and Tfc over the course of the treatment.Together, this is the first study investigating changes of different T cell subsets over the course of an allergoid AIT against airborne allergens. Our findings match previous reports on conventional AIT, especially the initial increase of Th2 responses. However, the observed changes were less pronounced which may be either due to the modification of allergens or to the reduced maintenance dose provided by natural allergen exposure compared to a perennial protocol.
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- 2023
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31. Hypoxia-induced downregulation of microRNA-186-5p in endothelial cells promotes non-small cell lung cancer angiogenesis by upregulating protein kinase C alpha
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Vivien Becker, Xu Yuan, Anne S. Boewe, Emmanuel Ampofo, Elke Ebert, Johannes Hohneck, Rainer M. Bohle, Eckart Meese, Yingjun Zhao, Michael D. Menger, Matthias W. Laschke, and Yuan Gu
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MT: non-coding RNAs ,endothelial cell ,hypoxia ,miR-186 ,NSCLC angiogenesis ,PKCα ,Therapeutics. Pharmacology ,RM1-950 - Abstract
The tumor microenvironment stimulates the angiogenic activity of endothelial cells (ECs) to facilitate tumor vascularization, growth, and metastasis. The involvement of microRNA-186-5p (miR-186) in regulating the aberrant activity of tumor-associated ECs has so far not been clarified. In the present study, we demonstrated that miR-186 is significantly downregulated in ECs microdissected from human non-small cell lung cancer (NSCLC) tissues compared with matched non-malignant lung tissues. In vitro analyses of primary human dermal microvascular ECs (HDMECs) exposed to different stimuli indicated that this miR-186 downregulation is triggered by hypoxia via activation of hypoxia-inducible factor 1 alpha (HIF1α). Transfection of HDMECs with miR-186 mimic (miR-186m) significantly inhibited their proliferation, migration, tube formation, and spheroid sprouting. In contrast, miR-186 inhibitor (miR-186i) exerted pro-angiogenic effects. In vivo, endothelial miR-186 overexpression inhibited the vascularization of Matrigel plugs and the initial growth of tumors composed of NSCLC cells (NCI-H460) and HDMECs. Mechanistic analyses revealed that the gene encoding for protein kinase C alpha (PKCα) is a bona fide target of miR-186. Activation of this kinase significantly reversed the miR-186m-repressed angiogenic activity of HDMECs. These findings indicate that downregulation of miR-186 in ECs mediates hypoxia-stimulated NSCLC angiogenesis by upregulating PKCα.
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- 2023
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32. Immunohistochemical assessment of PD-L1 expression using three different monoclonal antibodies in triple negative breast cancer patients
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Schmidt, Gilda, Guhl, Margit Maria, Solomayer, Erich-Franz, Wagenpfeil, Gudrun, Hammadeh, Mohammed Eid, Juhasz-Boess, Ingolf, Endrikat, Jan, Kasoha, Mariz, and Bohle, Rainer Maria
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- 2022
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33. Hypoxia-induced downregulation of microRNA-186-5p in endothelial cells promotes non-small cell lung cancer angiogenesis by upregulating protein kinase C alpha
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Becker, Vivien, Yuan, Xu, Boewe, Anne S., Ampofo, Emmanuel, Ebert, Elke, Hohneck, Johannes, Bohle, Rainer M., Meese, Eckart, Zhao, Yingjun, Menger, Michael D., Laschke, Matthias W., and Gu, Yuan
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- 2023
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34. Unilateral acute lung injury in pig: a promising animal model
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Johannes Geilen, Matthias Kainz, Bernhard Zapletal, Silvana Geleff, Wilfried Wisser, Barbara Bohle, Thomas Schweiger, Marcus J. Schultz, and Edda Tschernko
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Acute lung injury ,Large animal model ,Unilateral mechanical ventilation ,Medicine - Abstract
Abstract Background Acute lung injury (ALI) occurs in 23% unilateral. Models of unilateral ALI were developed and used previously without clearly demonstrating the strictly unilateral nature and severity of lung injury by the key parameters characterizing ALI as defined by the American Thoracic Society (ATS). Thus, the use of unilateral ALI remained rare despite the innovative approach. Therefore, we developed a unilateral model of ALI and focused on the crucial parameters characterizing ALI. This model can serve for direct comparisons between the injured and intact lungs within single animals, thus, reducing the number of animals required for valid experimental conclusions. Methods We established the model in nine pigs, followed by an evaluation of key parameters in six pigs (main study). Pigs were ventilated using an adapted left double-lumen tube for lung separation and two ventilators. ALI was induced in the left lung with cyclic rinsing (NaCl 0.9% + Triton® X-100), after which pigs were ventilated for different time spans to test for the timing of ALI onset. Ventilatory and metabolic parameters were evaluated, and bronchoalveolar lavage (BAL) was performed for measurements of inflammatory mediators. Finally, histopathological specimens were collected and examined in respect of characteristics defining the lung injury score (LIS) as suggested by the ATS. Results After adjustments of the model (n = 9) we were able to induce strictly left unilateral ALI in all six pigs of the evaluation study. The median lung injury score was 0.72 (IQR 0.62–0.79) in the left lung vs 0.14 (IQR 0.14–0.16; p
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- 2022
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35. Coupling of a Major Allergen to the Surface of Immune Cells for Use in Prophylactic Cell Therapy for the Prevention of IgE-Mediated Allergy
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Konstantinos Mengrelis, Gerhard Niederacher, Lisa Prickler, Verena Kainz, Anna Marianne Weijler, Elisa Rudolph, Victoria Stanek, Julia Eckl-Dorna, Ulrike Baranyi, Andreas Spittler, Margarete Focke-Tejkl, Barbara Bohle, Rudolf Valenta, Christian Friedrich Wilhelm Becker, Thomas Wekerle, and Birgit Linhart
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cell therapy ,allergy prevention ,Phl p 5 ,antigen cell labelling ,Cytology ,QH573-671 - Abstract
Up to a third of the world’s population suffers from allergies, yet the effectiveness of available preventative measures remains, at large, poor. Consequently, the development of successful prophylactic strategies for the induction of tolerance against allergens is crucial. In proof-of-concept studies, our laboratory has previously shown that the transfer of autologous hematopoietic stem cells (HSC) or autologous B cells expressing a major grass pollen allergen, Phl p 5, induces robust tolerance in mice. However, eventual clinical translation would require safe allergen expression without the need for retroviral transduction. Therefore, we aimed to chemically couple Phl p 5 to the surface of leukocytes and tested their ability to induce tolerance. Phl p 5 was coupled by two separate techniques, either by 1-ethyl-3-(3-dimethylaminopropyl) carbodiimide (EDC) or by linkage via a lipophilic anchor, 1,2-distearoyl-sn-glycero-3-phosphoethanolamine-poly(ethylene glycol)-maleimide (DSPE-PEG-Mal). The effectiveness was assessed in fresh and cultured Phl p 5-coupled cells by flow cytometry, image cytometry, and immunofluorescence microscopy. Chemical coupling of Phl p 5 using EDC was robust but was followed by rapid apoptosis. DSPE-PEG-Mal-mediated linkage was also strong, but antigen levels declined due to antigen internalization. Cells coupled with Phl p 5 by either method were transferred into autologous mice. While administration of EDC-coupled splenocytes together with short course immunosuppression initially reduced Phl p 5-specific antibody levels to a moderate degree, both methods did not induce sustained tolerance towards Phl p 5 upon several subcutaneous immunizations with the allergen. Overall, our results demonstrate the successful chemical linkage of an allergen to leukocytes using two separate techniques, eliminating the risks of genetic modifications. More durable surface expression still needs to be achieved for use in prophylactic cell therapy protocols.
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- 2024
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36. Synthesis and Photolysis Properties of a New Chloroquine Photoaffinity Probe
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Benita Kapuku and D. Scott Bohle
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antimalarial ,drug target ,photoaffinity label ,Organic chemistry ,QD241-441 - Abstract
A new chloroquine-derived photoaffinity probe has been prepared by a convergent synthesis from derivative of 4,7-dichloroquinoline and N1,N1-diethyl-N4-methylpentane. The features of this probe are a unique 3-azido photolabel, the pyridine ring of the quinoline, and the presence of a secondary amine at the 4-position of the quinoline. These features, particularly the 4-amino methylation, prevent triazole formation through combination of the 3-azide and the 4-amine. This undergoes facile cleavage with exposure to a medium-pressure mercury lamp with a 254 nm excitation wavelength. Trapping of the nitrene byproduct is accomplished with its reaction with N-phenylmaleimide as its cycloazidation product. The structure of a ring-opened DBU amine has been structurally characterized.
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- 2024
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37. Carrier-envelope-phase stable, high-contrast, double chirped-pulse-amplification laser system
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Jullien, Aurelie, Ricci, Aurelien, Bohle, Frederik, Rousseau, Jean-Philippe, Grabielle, Stephanie, Forget, Nicolas, Jacqmin, Hermance, Mercier, Brigitte, and Lopez-Martens, Rodrigo
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Physics - Optics - Abstract
We present the first carrier-envelope phase stable chirped pulse amplifier (CPA) featuring high temporal contrast for relativistic intensity laser-plasma interactions at 1 kHz repetition rate. The laser is based on a double-CPA architecture including XPW filtering technique and a high-energy grism-based compressor. 8 mJ, 22 fs pulses are produced with 10-11 temporal contrast at -20 ps and a CEP drift of 240 mrad RMS.
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- 2018
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38. Compression of CEP-stable multi-mJ laser pulses down to 4 fs in long hollow fibers
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Bohle, Frederik, Kretschmar, Martin, Jullien, Aurelie, Kovacs, Mate, Miranda, Miguel, Romero, Rosa, Crespo, Helder, Morgner, Uwe, Simon, Peter, Lopez-Martens, Rodrigo, and Nagy, Tamas
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Physics - Optics - Abstract
Carrier envelope phase stable 4 fs near-IR pulses with 3 mJ energy were generated by spectral broadening of circularly polarized 8 mJ pulses in a differentially pumped 2 m long composite stretched exible hollow ber. The pulses were characterized using both second-harmonic generation frequency-resolved optical gating (SHG-FROG) and SHG d-scan methods
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- 2018
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39. B‐cell receptors of EBV‐negative Burkitt lymphoma bind modified isoforms of autoantigens
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Theresa Bock, Moritz Bewarder, Onur Cetin, Natalie Fadle, Evi Regitz, Eva C. Schwarz, Jana Held, Sophie Roth, Stefan Lohse, Thorsten Pfuhl, Rabea Wagener, Sigrun Smola, Sören L. Becker, Rainer Maria Bohle, Lorenz Trümper, Reiner Siebert, Martin‐Leo Hansmann, Michael Pfreundschuh, Hans G. Drexler, Markus Hoth, Boris Kubuschok, Klaus Roemer, Klaus‐Dieter Preuss, Sylvia Hartmann, and Lorenz Thurner
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atypical post‐translationally modified isoforms ,autoantigens ,BCR ,Burkitt lymphoma ,immunotoxins ,neoantigens ,Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Abstract Burkitt lymphoma (BL) represents the most aggressive B‐cell‐lymphoma. Beside the hallmark of IG‐MYC‐translocation, surface B‐cell receptor (BCR) is expressed, and mutations in the BCR pathway are frequent. Coincidental infections in endemic BL, and specific extra‐nodal sites suggest antigenic triggers. To explore this hypothesis, BCRs of BL cell lines and cases were screened for reactivities against a panel of bacterial lysates, lysates of Plasmodium falciparum, a custom‐made virome array and against self‐antigens, including post‐translationally modified antigens. An atypically modified, SUMOylated isoform of Bystin, that is, SUMO1‐BYSL was identified as the antigen of the BCR of cell line CA46. SUMO1‐BYSL was exclusively expressed in CA46 cells with K139 as site of the SUMOylation. Secondly, an atypically acetylated isoform of HSP40 was identified as the antigen of the BCR of cell line BL41. K104 and K179 were the sites of immunogenic acetylation, and the acetylated HSP40 isoform was solely present in BL41 cells. Functionally, addition of SUMO1‐BYSL and acetylated HSP40 induced BCR pathway activation in CA46 and BL41 cells, respectively. Accordingly, SUMO1‐BYSL‐ETA’ immunotoxin, produced by a two‐step intein‐based conjugation, led to the specific killing of CA46 cells. Autoantibodies directed against SUMO1‐BYSL were found in 3 of 14 (21.4%), and autoantibodies against acetylated HSP40 in 1/14(7.1%) patients with sporadic Burkitt‐lymphoma. No reactivities against antigens of the infectious agent spectrum could be observed. These results indicate a pathogenic role of autoreactivity evoked by immunogenic post‐translational modifications in a subgroup of sporadic BL including two EBV‐negative BL cell lines.
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- 2022
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40. Knowledge, attitudes and practices towards malaria diagnostics among healthcare providers and healthcare-seekers in Kondoa district, Tanzania: a multi-methodological situation analysis
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Leah F. Bohle, Ally-Kebby Abdallah, Francesco Galli, Robert Canavan, and Kate Molesworth
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Malaria ,Tanzania ,Knowledge ,Attitudes ,Practices ,Healthcare providers ,Arctic medicine. Tropical medicine ,RC955-962 ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract Background Despite the large-scale rollout of malaria rapid diagnostic tests (RDTs) in Tanzania, many healthcare providers (HCPs) continue using blood film microscopy (BFM) and clinical examination to diagnose malaria, which can increase the risk of mal-diagnosis and over-prescribing of anti-malarials. Patients disregarding negative test results and self-treating exacerbate the problem. This study explored the knowledge, attitudes and practices of HCPs and healthcare-seekers regarding RDTs in comparison to BFM testing. Methods A situational analysis was, therefore, conducted in Kondoa District, Dodoma Region, Tanzania. A multi-methodological approach was adopted including (i) a health facility inventory and screening of logbooks from May 2013 to April 2014 with 77,126 patient entries from 33 health facilities; (ii) a survey of 40 HCPs offering malaria services; and iii) a survey of 309 randomly selected household members from the facilities’ catchment area. Surveys took place in April and May 2014. Results Health facility records revealed that out of 77,126 patient entries, 22% (n = 17,235) obtained a malaria diagnosis. Of those, 45% were made with BFM, 33% with RDT and 22% with clinical diagnosis. A higher rate of positive diagnoses was observed with BFM compared with RDT (71% vs 14%). In the HCP survey, 48% preferred using BFM for malaria testing, while 52% preferred RDT. Faced with a negative RDT result for a patient presenting with symptoms typical for malaria, 25% of HCPs stated they would confirm the result with a microscopy test, 70% would advise or perform a clinical diagnosis and 18% would prescribe anti-malarials. Interviews with household members revealed a preference for microscopy testing (58%) over RDT (23%), if presented with malaria symptoms. For participants familiar with both tests, a second opinion was desired in 45% after a negative microscopy result and in 90% after an RDT. Conclusions Non-adherence to negative diagnostics by HCPs and patients continues to be a concern. Frequent training and supportive supervision for HCPs diagnosing and treating malaria and non-malaria febrile illnesses is essential to offer quality services that can instil confidence in HCPs and patients alike. The introduction of new diagnostic devices should be paired with context-specific behaviour change interventions targeting healthcare-seekers and healthcare providers.
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- 2022
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41. Prognostic impact of intra- and peritumoral immune cell subpopulations in head and neck squamous cell carcinomas – comprehensive analysis of the TCGA-HNSC cohort and immunohistochemical validation on 101 patients
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Moritz Knebel, Sandrina Körner, Jan Philipp Kühn, Silke Wemmert, Lukas Brust, Sigrun Smola, Mathias Wagner, Rainer M. Bohle, Luc G. T. Morris, Abhinav Pandey, Bernhard Schick, and Maximilian Linxweiler
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HNSCC (head and neck squamous cell carcinoma) ,immunotherapy ,The Cancer Genome Atlas ,immunological tumor microenvironment ,prognostic biomarkers ,Immunologic diseases. Allergy ,RC581-607 - Abstract
BackgroundDue to the expanding role of immune checkpoint inhibition in the treatment of head and neck squamous cell carcinoma, understanding immunological processes in the tumor microevironment (TME) has strong translational importance. Though analytical methods for a comprehensive analysis of the immunological TME have constantly improved and expanded over the past years the prognostic relevance of immune cell composition in head and neck cancer TME largely remains ambiguous with most studies focusing on one or a small subset of immune cells.MethodsThe overall survival (OS) of the TCGA-HNSC patient cohort comprising 513 head and neck cancer patients was correlated with a total of 29 different immune metrics including a wide spectrum of immune cell subpopulations as well as immune checkpoint receptors and cytokines using RNAseq based immune deconvolution analyses. The most significant predictors of survival among these 29 immune metrics were validated on a separate HNSCC patient cohort (n=101) using immunohistochemistry: CD3, CD20+CXCR5, CD4+CXCR5, Foxp3 and CD68.ResultsOverall immune infiltration irrespective of immune cell composition showed no significant correlation with the patients’ overall survival in the TCGA-HNSC cohort. However, when focusing on different immune cell subpopulations, naïve B cells (p=0.0006), follicular T-helper cells (p
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- 2023
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42. B-cell receptor reactivity against Rothia mucilaginosa in nodular lymphocyte-predominant Hodgkin lymphoma
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Lorenz Thurner, Natalie Fadle, Evi Regitz, Sophie Roth, Onur Cetin, Igor Age Kos, Simon Mauro Hess, Julia Bein, Rainer Maria Bohle, Martine Vornanen, Christer Sundström, Laurence de Leval, Enrico Tiacci, Peter Borchmann, Andreas Engert, Viola Poeschel, Gerhard Held, Eva C. Schwarz, Frank Neumann, Klaus-Dieter Preuss, Markus Hoth, Ralf Küppers, Karola Lehman, Martin-Leo Hansmann, Sören L. Becker, Moritz Bewarder, and Sylvia Hartmann
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Diseases of the blood and blood-forming organs ,RC633-647.5 - Abstract
Nodular lymphocyte-predominant Hodgkin lymphoma (NLPHL) is a Hodgkin lymphoma expressing functional B-cell receptors (BCR). Recently, we described a dual stimulation model of IgD+ lymphocyte-predominant cells by Moraxella catarrhalis antigen RpoC and its superantigen MID/hag, associated with extralong CDR3 and HLA-DRB1*04 or HLADRB1* 07 haplotype. The aim of the present study was to extend the antigen screening to further bacteria and viruses. The fragment antibody-binding (Fab) regions of seven new and 15 previously reported cases were analyzed. The reactivity of non-Moraxella spp.-reactive Fab regions against lysates of Rothia mucilaginosa was observed in 5/22 (22.7%) cases. Galactofuranosyl transferase (Gltf) and 2,3-butanediol dehydrogenase (Bdh) of R. mucilaginosa were identified by comparative silver- and immuno-staining in two-dimensional gels, with subsequent mass spectrometry and validation by western blots and enzyme-linked immunosorbent assay. Both R. mucilaginosa Gltf and Bdh induced BCR pathway activation and proliferation in vitro. Apoptosis was induced by recombinant Gltf/ETA’-immunotoxin conjugates in DEV cells expressing recombinant R. mucilaginosa-reactive BCR. Reactivity against M. catarrhalis RpoC was confirmed in 3/7 newly expressed BCR (total 10/22 reactive to Moraxella spp.), resulting in 15/22 (68.2%) cases with BCR reactivity against defined bacterial antigens. These findings strengthen the hypothesis of bacterial trigger contributing to subsets of NLPHL.
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- 2023
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43. The secretome of irradiated peripheral blood mononuclear cells attenuates activation of mast cells and basophils
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Laggner, Maria, Acosta, Gabriela Sánchez, Kitzmüller, Claudia, Copic, Dragan, Gruber, Florian, Altenburger, Lukas Matthäus, Vorstandlechner, Vera, Gugerell, Alfred, Direder, Martin, Klas, Katharina, Bormann, Daniel, Peterbauer, Anja, Shibuya, Akira, Bohle, Barbara, Ankersmit, Hendrik Jan, and Mildner, Michael
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- 2022
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44. Mission statements in universities: Readability and performance
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Cortés, Julián D., Rivera, Liliana, and Carbonelld, Katerina Bohle
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- 2022
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45. Structural chemistry at McGill
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Bohle, D. Scott, Wharf, Ivor, Gaydon, Quentin, Kapuku, Benita, Bellamare, Marie J., Paul, Mirna, Wynter, Tamika, and Karageorghis, Philip J.
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Chemistry -- Study and teaching ,Laboratory equipment -- Forecasts and trends ,Laboratories -- Equipment and supplies ,Universities and colleges -- Departments ,Market trend/market analysis ,Chemistry ,McGill University -- Curricula - Abstract
A brief description of some of the key individuals at McGill University and their contributions to the development of crystallography is given. This is followed by examples of recent structure determinations, which include organic heterocycles, natural products, inorganic salts, and organometallic complexes. Specifically, the bispyridinium adduct of protoporphyrin, the piperidinyl adduct of 3,7-dichloroquinine, trisbenzylmethylthiol, sodium methylarsonium (V), potassium hydroxylamine sulfonate, Vaska's complex adduct from the oxidative addition of p-tolylmercaptan, and a bis isocyanoiminotriphenylphosphorane adduct of rutheniumdichloridetristriphenylphosphine are described. Key words: X-ray crystallography, protoporphyrin, methylarsonium, hydroxyaminesulfonate, organometallic. Cet article presente brievement certains chercheurs renommes de l'Universite McGill et decrit leur apport au developpement de la cristallographie. Cette mise en contexte est suivie d'exemples recents d'elucidation de structures, dont des heterocycles organiques, des produits naturels, des sels inorganiques et des complexes organometalliques. En particulier, nous decrivons l'adduit bispyridinium de la protoporphyrine, l'adduit piperidinyle de la 3,7 dichloroquinine, le tribenzylmethanethiol, le methylarseniate(V) de sodium, l'hydroxylaminesulfonate de potassium, l'adduit provenant de l'addition oxydante du p tolylmercaptan au complexe de Vaska et un adduit bis(isocyanoiminotriphenylphosphorane) du dichlorotris(triphenylphosphine)ruthenium. Mots-cles: diffraction des rayons X, protoporphyrine, methylarsenate, hydroxylaminesulfonate, organometallique., Introduction Structural chemistry is a mainstay of our science, and its importance is demonstrated by the exponential growth in the numbers of crystal structure determinations, the continual development of new [...]
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- 2022
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46. Genomics of Re-Emergent Aeromonas salmonicida in Atlantic Salmon Outbreaks
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Marcos Godoy, Marco Montes de Oca, Rudy Suarez, Alexis Martinez, Juan Pablo Pontigo, Diego Caro, Karina Kusch, Yoandy Coca, Harry Bohle, Sion Bayliss, Molly Kibenge, and Frederick Kibenge
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furunculosis ,Aeromonas salmonicida ,Salmo salar ,genomic diversity ,Biology (General) ,QH301-705.5 - Abstract
Furunculosis, caused by Aeromonas salmonicida, poses a significant threat to both salmonid and non-salmonid fish in diverse aquatic environments. This study explores the genomic intricacies of re-emergent A. salmonicida outbreaks in Atlantic salmon (Salmo salar). Previous clinical cases have exhibited pathological characteristics, such as periorbital hemorrhages and gastrointestinal abnormalities. Genomic sequencing of three Chilean isolates (ASA04, ASA05, and CIBA_5017) and 25 previously described genomes determined the pan-genome, phylogenomics, insertion sequences, and restriction-modification systems. Unique gene families have contributed to an improved understanding of the psychrophilic and mesophilic clades, while phylogenomic analysis has been used to identify mesophilic and psychrophilic strains, thereby further differentiating between typical and atypical psychrophilic isolates. Diverse insertion sequences and restriction-modification patterns have highlighted genomic structural differences, and virulence factor predictions can emphasize exotoxin disparities, especially between psychrophilic and mesophilic strains. Thus, a novel plasmid was characterized which emphasized the role of plasmids in virulence and antibiotic resistance. The analysis of antibiotic resistance factors revealed resistance against various drug classes in Chilean strains. Overall, this study elucidates the genomic dynamics of re-emergent A. salmonicida and provides novel insights into their virulence, antibiotic resistance, and population structure.
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- 2023
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47. Impact of selenium biofortification on production characteristics of forages grown following standard management practices in Oregon
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Jean A. Hall, Gerd Bobe, Shelby J. Filley, Mylen G. Bohle, Gene J. Pirelli, Guogie Wang, T. Zane Davis, and Gary S. Bañuelos
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forage fertilization ,grasses ,legumes ,nitrogen ,selenium yield ,selenium agronomic efficiency ,Plant culture ,SB1-1110 - Abstract
IntroductionLow selenium (Se) concentrations in soils and plants pose a health risk for ruminants consuming locally-grown forages. Previous studies have shown that Se concentrations in forages can be increased using soil-applied selenate amendments. However, the effects of foliar selenate amendments applied with traditional nitrogen-phosphorus-potassium-sulfur (NPKS) fertilizers on forage yields, and nutrient contents, and agronomic efficiencies are unknown.MethodsUsing a split plot design, we determined the effects of springtime sodium selenate foliar amendment rates (0, 45, and 90 g Se ha-1) and NPKS application (none, NPK for grasses/PK for alfalfa, and NPKS/PKS fertilization at amounts adapted to meet local forage and soil requirements) on forage growth and N, S, and Se concentrations, yields, and agronomic efficiencies. This 2-year study was conducted across Oregon on four representative forage fields: orchardgrass (Dactylis glomerata L.) in Terrebonne (central Oregon), grass-clover mixture in Roseburg (southwestern Oregon), and both grass mixture and alfalfa (Medicago sativa L.) fields in Union (eastern Oregon).ResultsGrasses grew poorly and were low in N content without NPK fertilization. Fertilization with NPK/PK promoted forage growth, increased forage N concentrations, and had to be co-applied with S when plant available S was low. Without Se amendment, forage Se concentrations were low and further decreased with NPKS/PKS fertilization. Selenate amendment linearly increased forage Se concentration without adversely affecting forage yields, N and S concentrations, or N and S agronomic efficiencies.DiscussionImportantly, S fertilization did not interfere with Se uptake in Se amended plots. In conclusion, co-application of NPKS/PKS fertilizers and foliar sodium selenate in springtime is an effective strategy to increase forage total Se concentrations, while maintaining optimal growth and quality of Oregon forages.
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- 2023
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48. Effect of the 3q26-coding oncogene SEC62 as a potential prognostic marker in patients with ovarian neoplasia
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Julia C. Radosa, Mariz Kasoha, Anne-Christine Schilz, Zoltan F. Takacs, Askin Kaya, Marc P. Radosa, Barbara Linxweiler, Maximilian Linxweiler, Rainer M. Bohle, Mathias Wagner, Gudrun Wagenpfeil, Erich-Franz Solomayer, and Julia S. M. Zimmermann
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Sec62 ,prognostic ,therapy ,ovarian cancer ,borderline tumors of the ovary ,tumor driver mutation ,Physiology ,QP1-981 - Abstract
With approximately 220,000 newly diagnosed cases per year, ovarian cancer is among the most frequently occurring cancers among women and the second leading cause of death from gynecological malignancies worldwide. About 70% of these cancers are diagnosed in advanced stages (FIGO IIB–IV), with a 5-year survival rate of 20–30%. Due to the poor prognosis of this disease, research has focused on its pathogenesis and the identification of prognostic factors. One possible approach for the identification of biological markers is the identification of tumor entity-specific genetic “driver mutations”. One such mutation is 3q26 amplification in the tumor driver SEC62, which has been identified as relevant to the pathogenesis of ovarian cancer. This study was conducted to investigate the role of SEC62 in ovarian malignancies. Patients with ovarian neoplasias (borderline tumors of the ovary and ovarian cancer) who were treated between January 2007 and April 2019 at the Department of Gynecology and Obstetrics, Saarland University Hospital, were included in this retrospective study. SEC62 expression in tumor tissue samples taken during clinical treatment was assessed immunohistochemically, with the calculation of immunoreactivity scores according to Remmele and Stegner, Pathologe, 1987, 8, 138–140. Correlations of SEC62 expression with the TNM stage, histological subtype, tumor entity, and oncological outcomes (progression-free and overall survival) were examined. The sample comprised 167 patients (123 with ovarian cancer and 44 with borderline tumors of the ovary) with a median age of 60 (range, 15–87) years. At the time of diagnosis, 77 (46%) cases were FIGO stage III. All tissue slides showed SEC62 overexpression in tumor cells and no SEC62 expression in other cells. Median immunoreactivity scores were 8 (range, 2–12) for ovarian cancer and 9 (range, 4–12) for borderline tumors of the ovary. Patients with borderline tumors of the ovary as well as patients with ovarian cancer and an immunoreactive score (IRS) ≤ 9 showed an improved overall survival compared to those presenting with an IRS score >9 (p = 0.03). SEC62 seems to be a prognostic biomarker for the overall survival of patients with ovarian malignancies.
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- 2023
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49. Knowledge, attitudes and practices towards malaria diagnostics among healthcare providers and healthcare-seekers in Kondoa district, Tanzania: a multi-methodological situation analysis
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Bohle, Leah F., Abdallah, Ally-Kebby, Galli, Francesco, Canavan, Robert, and Molesworth, Kate
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- 2022
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50. Unilateral acute lung injury in pig: a promising animal model
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Geilen, Johannes, Kainz, Matthias, Zapletal, Bernhard, Geleff, Silvana, Wisser, Wilfried, Bohle, Barbara, Schweiger, Thomas, Schultz, Marcus J., and Tschernko, Edda
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- 2022
- Full Text
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