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2. Global genetic diversity, introgression, and evolutionary adaptation of indicine cattle revealed by whole genome sequencing

Author

Chen, Ningbo, Xia, Xiaoting, Hanif, Quratulain, Zhang, Fengwei, Dang, Ruihua, Huang, Bizhi, Lyu, Yang, Luo, Xiaoyu, Zhang, Hucai, Yan, Huixuan, Wang, Shikang, Wang, Fuwen, Chen, Jialei, Guan, Xiwen, Liu, Yangkai, Li, Shuang, Jin, Liangliang, Wang, Pengfei, Sun, Luyang, Zhang, Jicai, Liu, Jianyong, Qu, Kaixing, Cao, Yanhong, Sun, Junli, Liao, Yuying, Xiao, Zhengzhong, Cai, Ming, Mu, Lan, Siddiki, Amam Zonaed, Asif, Muhammad, Mansoor, Shahid, Babar, Masroor Ellahi, Hussain, Tanveer, Silva, Gamamada Liyanage Lalanie Pradeepa, Gorkhali, Neena Amatya, Terefe, Endashaw, Belay, Gurja, Tijjani, Abdulfatai, Zegeye, Tsadkan, Gebre, Mebrate Genet, Ma, Yun, Wang, Yu, Huang, Yongzhen, Lan, Xianyong, Chen, Hong, Migliore, Nicola Rambaldi, Colombo, Giulia, Semino, Ornella, Achilli, Alessandro, Sinding, Mikkel-Holger S., Lenstra, Johannes A., Cheng, Haijian, Lu, Wenfa, Hanotte, Olivier, Han, Jianlin, Jiang, Yu, and Lei, Chuzhao

Published
2023
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3. DNA analysis of dust particles sampled from the Turin Shroud

Author

Barcaccia Gianni, Galla Giulio, Achilli Alessandro, Olivieri Anna, and Torroni Antonio

Subjects
Engineering (General). Civil engineering (General), TA1-2040
Abstract

The Turin Shroud is traditionally considered the burial cloth in which the body of Jesus Christ was enveloped after his dead about 2000 years ago. Here we report the main findings from the analysis of genomic DNA extracted from dust particles, which were vacuumed from the backside of Turin Shroud corresponding to internal parts of the body image and the lateral edge used for its radiocarbon dating. Specific plant chloroplast DNA (cpDNA) and human mitochondrial DNA (mtDNA) target regions were analyzed to identify plant taxonomic entities and human genetic lineages. Plant species native to the Mediterranean countries and widespread in the Middle East (Vavilov’s centers of origin V and IV, respectively) were identified, in addition to others living in temperate and boreal regions of the northern hemisphere or having their primary center of origin and distribution in central and eastern Asia (mainly China, I) or native only to the Americas. Since many of these species were introduced into Europe after the Marco Polo travels and Christopher Columbus voyages, our findings suggest a geographic scenario for which only some of the detected plant cpDNAs are compatible with the supposed origin and trail of the relic, whereas others are likely from a historical interval later than the Medieval period. As for human mtDNAs, our analyses allowed the detection of sequences from multiple subjects, which clustered into a number of western Eurasian haplogroups, including some known to be typical of western Europe (H1 and H3), the Near East (H13 and H33), the Arabian Peninsula (R0a) and the Indian sub-continent (M56 and R8). Such mitogenome diversity could be due to contacts with subjects of different ethnic origins in recent centuries, but it is also compatible with the historic path followed by the Turin Shroud during its supposed 2000-year journey from the Near East. Furthermore it raises the possibility of an Indian manufacture of the linen cloth.

Published
2015
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4. Mitochondrial and Y-chromosome diversity of the Tharus (Nepal): a reservoir of genetic variation

Author

Modiano Guido, Achilli Alessandro, Maranta Ramona, Battaglia Vincenza, Pala Maria, Fornarino Simona, Torroni Antonio, Semino Ornella, and Santachiara-Benerecetti Silvana A

Subjects
Evolution, QH359-425
Abstract

Abstract Background Central Asia and the Indian subcontinent represent an area considered as a source and a reservoir for human genetic diversity, with many markers taking root here, most of which are the ancestral state of eastern and western haplogroups, while others are local. Between these two regions, Terai (Nepal) is a pivotal passageway allowing, in different times, multiple population interactions, although because of its highly malarial environment, it was scarcely inhabited until a few decades ago, when malaria was eradicated. One of the oldest and the largest indigenous people of Terai is represented by the malaria resistant Tharus, whose gene pool could still retain traces of ancient complex interactions. Until now, however, investigations on their genetic structure have been scarce mainly identifying East Asian signatures. Results High-resolution analyses of mitochondrial-DNA (including 34 complete sequences) and Y-chromosome (67 SNPs and 12 STRs) variations carried out in 173 Tharus (two groups from Central and one from Eastern Terai), and 104 Indians (Hindus from Terai and New Delhi and tribals from Andhra Pradesh) allowed the identification of three principal components: East Asian, West Eurasian and Indian, the last including both local and inter-regional sub-components, at least for the Y chromosome. Conclusion Although remarkable quantitative and qualitative differences appear among the various population groups and also between sexes within the same group, many mitochondrial-DNA and Y-chromosome lineages are shared or derived from ancient Indian haplogroups, thus revealing a deep shared ancestry between Tharus and Indians. Interestingly, the local Y-chromosome Indian component observed in the Andhra-Pradesh tribals is present in all Tharu groups, whereas the inter-regional component strongly prevails in the two Hindu samples and other Nepalese populations. The complete sequencing of mtDNAs from unresolved haplogroups also provided informative markers that greatly improved the mtDNA phylogeny and allowed the identification of ancient relationships between Tharus and Malaysia, the Andaman Islands and Japan as well as between India and North and East Africa. Overall, this study gives a paradigmatic example of the importance of genetic isolates in revealing variants not easily detectable in the general population.

Published
2009
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6. The exceptionally high rate of spontaneous mutations in the polymerase delta proofreading exonuclease-deficient Saccharomyces cerevisiae strain starved for adenine

Author

Pavlov Youri I, Lucaccioni Angela, Morpurgo Giorgio, Casalone Enrico, Matmati Nabil, Achilli Alessandro, and Babudri Nora

Subjects
Genetics, QH426-470
Abstract

Abstract Background Mutagenesis induced in the yeast Saccharomyces cerevisiae by starvation for nutrilites is a well-documented phenomenon of an unknown mechanism. We have previously shown that the polymerase delta proofreading activity controls spontaneous mutagenesis in cells starved for histidine. To obtain further information, we compared the effect of adenine starvation on mutagenesis in wild-type cells and, in cells lacking the proofreading activity of polymerase delta (phenotype Exo-, mutation pol3-01). Results Ade+ revertants accumulated at a very high rate on adenine-free plates so that their frequency on day 16 after plating was 1.5 × 10-4 for wild-type and 1.0 × 10-2 for the Exo- strain. In the Exo- strain, all revertants arising under adenine starvation are suppressors of the original mutation, most possessed additional nutritional requirements, and 50% of them were temperature sensitive. Conclusions Adenine starvation is highly mutagenic in yeast. The deficiency in the polymerase delta proofreading activity in strains with the pol3-01 mutation leads to a further 66-fold increase of the rate of mutations. Our data suggest that adenine starvation induces genome-wide hyper-mutagenesis in the Exo- strain.

Published
2004
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8. Mitochondrial DNA control-region and coding-region data highlight geographically structured diversity and post-domestication population dynamics in worldwide donkeys.

Author

Rambaldi Migliore, Nicola, Bigi, Daniele, Milanesi, Marco, Zambonelli, Paolo, Negrini, Riccardo, Morabito, Simone, Verini-Supplizi, Andrea, Liotta, Luigi, Chegdani, Fatima, Agha, Saif, Salim, Bashir, Beja-Pereira, Albano, Torroni, Antonio, Ajmone‐Marsan, Paolo, Achilli, Alessandro, and Colli, Licia

Subjects
MITOCHONDRIAL DNA, HAPLOGROUPS, POPULATION dynamics, EQUUS, DEVELOPED countries, DONKEYS
Abstract

Donkeys (Equus asinus) have been used extensively in agriculture and transportations since their domestication, ca. 5000–7000 years ago, but the increased mechanization of the last century has largely spoiled their role as burden animals, particularly in developed countries. Consequently, donkey breeds and population sizes have been declining for decades, and the diversity contributed by autochthonous gene pools has been eroded. Here, we examined coding-region data extracted from 164 complete mitogenomes and 1392 donkey mitochondrial DNA (mtDNA) control-region sequences to (i) assess worldwide diversity, (ii) evaluate geographical patterns of variation, and (iii) provide a new nomenclature of mtDNA haplogroups. The topology of the Maximum Parsimony tree confirmed the two previously identified major clades, i.e. Clades 1 and 2, but also highlighted the occurrence of a deep-diverging lineage within Clade 2 that left a marginal trace in modern donkeys. Thanks to the identification of stable and highly diagnostic coding-region mutational motifs, the two lineages were renamed as haplogroup A and haplogroup B, respectively, to harmonize clade nomenclature with the standard currently adopted for other livestock species. Control-region diversity and population expansion metrics varied considerably between geographical areas but confirmed North-eastern Africa as the likely domestication center. The patterns of geographical distribution of variation analyzed through phylogenetic networks and AMOVA confirmed the co-occurrence of both haplogroups in all sampled populations, while differences at the regional level point to the joint effects of demography, past human migrations and trade following the spread of donkeys out of the domestication center. Despite the strong decline that donkey populations have undergone for decades in many areas of the world, the sizeable mtDNA variability we scored, and the possible identification of a new early radiating lineage further stress the need for an extensive and large-scale characterization of donkey nuclear genome diversity to identify hotspots of variation and aid the conservation of local breeds worldwide. [ABSTRACT FROM AUTHOR]

Published
2024
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12. Biomolecular insights into North African-related ancestry, mobility and diet in eleventh-century Al-Andalus

Author

Silva, Marina, Oteo-García, Gonzalo, Martiniano, Rui, Guimarães, João, von Tersch, Matthew, Madour, Ali, Shoeib, Tarek, Fichera, Alessandro, Justeau, Pierre, Foody, M. George B., McGrath, Krista, Barrachina, Amparo, Palomar, Vicente, Dulias, Katharina, Yau, Bobby, Gandini, Francesca, Clarke, Douglas J., Rosa, Alexandra, Brehm, António, Flaquer, Antònia, Rito, Teresa, Olivieri, Anna, Achilli, Alessandro, Torroni, Antonio, Gómez-Carballa, Alberto, Salas, Antonio, Bryk, Jaroslaw, Ditchfield, Peter W., Alexander, Michelle, Pala, Maria, Soares, Pedro A., Edwards, Ceiridwen J., and Richards, Martin B.

Published
2021
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14. Ukrainian Community Archives in Victoria, Australia: A Stocktake

Author

Achilli, Alessandro, Pavlyshyn, Marko, and Shmihelska-Kozuliak, Olha

Subjects
History, community archives, non-government organizations, Victoria (Australia), Literature and Literary Theory, Sociology and Political Science, immigrants, Ukrainian diaspora, Language and Linguistics
Abstract

Contemporary research increasingly recognizes the role of community archives in preserving evidence of the pasts of identity groups, validating their historical experience, and thus furthering the goals of social justice and equality. Such values underlie the Association of Ukrainians in Victoria (Australia) Archival Project, which the present article places into the broader context of Ukrainian community archival collections in the state of Victoria. Data obtained through interview have enabled a descriptive survey of such collections, which are found to be concentrated in a handful of “archival clusters” in suburban Melbourne and regional Victoria. The most typical contents of the collections—records of the proceedings and activities of community secular and religious organizations—reflect the dominant role in the community’s life of organizations established by post-World War II immigrants. The collections constitute a rich resource for research into the part of the community encompassed by these organizations, even if, as a rule, at least at present, they are not well ordered or described. They are less revealing of the experience of immigrants who arrived later or were less inclined to join community organizations. Lack of resources, both human and material, confronts the mainly volunteer officeholders who are responsible for the organizations’ archives. In consequence, collections are often inadequately and sometimes unsafely housed, and in general only informally organized; finding aids or descriptions of them are seldom available. Initiatives taken by some organizations suggest that there is growing awareness among community activists of the potential value of archives for showing and interpreting the community to itself and to others.

Published
2023

16. Chapter Rethinking Tradition, Rejecting the Past: Ukrainian Poetry of the 1910s and 1920s in the Search for Europe

Author

Achilli, Alessandro

Subjects
Mykola Zerov, Mykhail Semenko, Mykola Khvylovyi, Mykola Voronyi, Ukrainian poetry’s reception, thema EDItEUR::D Biography, Literature and Literary studies::DS Literature: history and criticism
Abstract

In my contribution, I analyze texts by Mykola Zerov, Mychajl’ Semenko, and Mykola Chvyl’ovyj, three leading Ukrainian writers of the 1910s and 1920s, that thematize Ukrainian literature of the first years of the twentieth century, criticizing its alleged backwardness and lack of artistic quality. With their rejection of recent tradition, Zerov, Semenko, and Chvyl’ovyj were pursuing an ambitious program of cultural renewal aimed at elevating Ukrainian poetry and prose to the same level as classical and contemporary European literature. A recurrent name in their poems and pieces of criticism is that of Mykola Voronyj, a key figure of early-twentieth-century Ukrainian culture, whose controversial reception sheds light on the extent to which Zerov and Semenko were eager to radically renew Ukrainian literature after its first modernization attempts, which they deemed unsatisfying.

Published
2023
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18. Mitogenome evidence shows two radiation events and dispersals of matrilineal ancestry from northern coastal China to the Americas and Japan

Author

Li, Yu-Chun, primary, Gao, Zong-Liang, additional, Liu, Kai-Jun, additional, Tian, Jiao-Yang, additional, Yang, Bin-Yu, additional, Rahman, Zia Ur, additional, Yang, Li-Qin, additional, Zhang, Su-Hua, additional, Li, Cheng-Tao, additional, Achilli, Alessandro, additional, Semino, Ornella, additional, Torroni, Antonio, additional, and Kong, Qing-Peng, additional

Published
2023
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19. The mitogenome portrait of Umbria in Central Italy as depicted by contemporary inhabitants and pre-Roman remains

Author

Modi, Alessandra, Lancioni, Hovirag, Cardinali, Irene, Capodiferro, Marco R., Rambaldi Migliore, Nicola, Hussein, Abir, Strobl, Christina, Bodner, Martin, Schnaller, Lisa, Xavier, Catarina, Rizzi, Ermanno, Bonomi Ponzi, Laura, Vai, Stefania, Raveane, Alessandro, Cavadas, Bruno, Semino, Ornella, Torroni, Antonio, Olivieri, Anna, Lari, Martina, Pereira, Luisa, Parson, Walther, Caramelli, David, and Achilli, Alessandro

Published
2020
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22. The multifaceted genomic history of Ashaninka from Amazonian Peru

Author

Capodiferro, Marco Rosario, primary, Chero Osorio, Ana María, additional, Rambaldi Migliore, Nicola, additional, Tineo Tineo, Dean Herman, additional, Raveane, Alessandro, additional, Xavier, Catarina, additional, Bodner, Martin, additional, Simão, Filipa, additional, Ongaro, Linda, additional, Montinaro, Francesco, additional, Lindo, John, additional, Huerta-Sanchez, Emilia, additional, Politis, Gustavo, additional, Barbieri, Chiara, additional, Parson, Walther, additional, Gusmão, Leonor, additional, and Achilli, Alessandro, additional

Published
2023
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23. Tra comparatistica e studi postcoloniali. Passato e futuro degli approcci italiani alle intersezioni letterarie slavo-orientali.

Author

Achilli, Alessandro

Subjects
RUSSIAN invasion of Ukraine, 2022-, POSTCOLONIALISM, TWENTY-first century, RUSSIAN literature, COMPARATIVE studies
Abstract

This contribution reflects on the state of comparative studies devoted to East Slavic literatures in Italy. Between the end of the 20th and beginning of the 21st century, Italian scholars of Slavic studies and the editors of Italian journals have made a number of interesting proposals on the subject. However, hyper-specialization has often hampered efforts to put theory into practice. I foreground some of these important methodological contributions by Italian scholars on comparative Slavic studies and discuss them both in the international context and with reference to other methodologies and research fields, most notably postcolonial studies. After the full-scale invasion of Ukraine by the Russian Federation in February 2022, comparative studies at the crossroads of Belarusian, Russian, and Ukrainian cultures have become a thorny issue. Scholars should seek to strike a balance between a philological approach and the ethical need to respect the different cultural orientations of East Slavic nations. [ABSTRACT FROM AUTHOR]

Published
2023
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24. The diverse genetic origins of a Classical period Greek army

Author

Reitsema, Laurie J., primary, Mittnik, Alissa, additional, Kyle, Britney, additional, Catalano, Giulio, additional, Fabbri, Pier Francesco, additional, Kazmi, Adam C. S., additional, Reinberger, Katherine L., additional, Sineo, Luca, additional, Vassallo, Stefano, additional, Bernardos, Rebecca, additional, Broomandkhoshbacht, Nasreen, additional, Callan, Kim, additional, Candilio, Francesca, additional, Cheronet, Olivia, additional, Curtis, Elizabeth, additional, Fernandes, Daniel, additional, Lari, Martina, additional, Lawson, Ann Marie, additional, Mah, Matthew, additional, Mallick, Swapan, additional, Mandl, Kirsten, additional, Micco, Adam, additional, Modi, Alessandra, additional, Oppenheimer, Jonas, additional, Özdogan, Kadir Toykan, additional, Rohland, Nadin, additional, Stewardson, Kristin, additional, Vai, Stefania, additional, Vergata, Chiara, additional, Workman, J. Noah, additional, Zalzala, Fatma, additional, Zaro, Valentina, additional, Achilli, Alessandro, additional, Anagnostopoulos, Achilles, additional, Capelli, Cristian, additional, Constantinou, Varnavas, additional, Lancioni, Hovirag, additional, Olivieri, Anna, additional, Papadopoulou, Anastasia, additional, Psatha, Nikoleta, additional, Semino, Ornella, additional, Stamatoyannopoulos, John, additional, Valliannou, Ioanna, additional, Yannaki, Evangelia, additional, Lazaridis, Iosif, additional, Patterson, Nick, additional, Ringbauer, Harald, additional, Caramelli, David, additional, Pinhasi, Ron, additional, and Reich, David, additional

Published
2022
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25. Tracing Modern Human Origins

Author

Harpending, Henry, Eswaran, Vlnayak, Macaulay, Vincent, Hill, Catherine, Achilli, Alessandro, Rengo, Chiara, Clarke, Douglas, Meehan, William, Blackburn, James, Semino, Ornella, Scozzari, Rosaria, Cruciani, Fulvio, Taha, Adi, Shaari, Norazila Kassim, Raja, Joseph Maripa, Ismail, Patimah, Zainuddin, Zafarina, Goodwin, William, Bulbeck, David, Bandelt, Hans-Jürgen, Oppenheimer, Stephen, Torroni, Antonio, Richards, Martin, Thangaraj, Kumarasamy, Chaubey, Gyaneshwer, Kivisild, Toomas, Reddy, Alla G., Singh, Vijay K., Rasalkar, Avinash A., and Singh, Lalji

Published
2005

26. Single, Rapid Coastal Settlement of Asia Revealed by Analysis of Complete Mitochondrial Genomes

Author

Macaulay, Vincent, Hill, Catherine, Achilli, Alessandro, Rengo, Chiara, Clarke, Douglas, Meehan, William, Blackburn, James, Semino, Ornella, Scozzari, Rosaria, Cruciani, Fulvio, Taha, Adi, Shaari, Norazila Kassim, Raja, Joseph Maripa, Ismail, Patimah, Zainuddin, Zafarina, Goodwin, William, Bulbeck, David, Bandelt, Hans-Jürgen, Oppenheimer, Stephen, Torroni, Antonio, and Richards, Martin

Published
2005

27. Genetic structure and differentiation from early bronze age in the mediterranean island of sicily: Insights from ancient mitochondrial genomes

Author

Modi, Alessandra, primary, Vizzari, Maria Teresa, additional, Catalano, Giulio, additional, Boscolo Agostini, Rajiv, additional, Vai, Stefania, additional, Lari, Martina, additional, Vergata, Chiara, additional, Zaro, Valentina, additional, Liccioli, Lucia, additional, Fedi, Mariaelena, additional, Barone, Serena, additional, Nigro, Lorenzo, additional, Lancioni, Hovirag, additional, Achilli, Alessandro, additional, Sineo, Luca, additional, Caramelli, David, additional, and Ghirotto, Silvia, additional

Published
2022
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28. The worldwide spread of Aedes albopictus: New insights from mitogenomes

Author

Battaglia, Vincenza, primary, Agostini, Vincenzo, additional, Moroni, Elisabetta, additional, Colombo, Giulia, additional, Lombardo, Gianluca, additional, Rambaldi Migliore, Nicola, additional, Gabrieli, Paolo, additional, Garofalo, Maria, additional, Gagliardi, Stella, additional, Gomulski, Ludvik M., additional, Ferretti, Luca, additional, Semino, Ornella, additional, Malacrida, Anna R., additional, Gasperi, Giuliano, additional, Achilli, Alessandro, additional, Torroni, Antonio, additional, and Olivieri, Anna, additional

Published
2022
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29. Assessing temporal and geographic contacts across the Adriatic Sea through the analysis of genome-wide data from Southern Italy

Author

Raveane, Alessandro, primary, Molinaro, Ludovica, additional, Aneli, Serena, additional, Capodiferro, Marco Rosario, additional, de Gennaro, Luciana, additional, Ongaro, Linda, additional, Rambaldi Migliore, Nicola, additional, Soffiati, Sara, additional, Scarano, Teodoro, additional, Torroni, Antonio, additional, Achilli, Alessandro, additional, Ventura, Mario, additional, Pagani, Luca, additional, Capelli, Cristian, additional, Olivieri, Anna, additional, Bertolini, Francesco, additional, Semino, Ornella, additional, and Montinaro, Francesco, additional

Published
2022
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30. Helena’s Many Daughters: More Mitogenome Diversity behind the Most Common West Eurasian mtDNA Control Region Haplotype in an Extended Italian Population Sample

Author

Bodner, Martin, primary, Amory, Christina, additional, Olivieri, Anna, additional, Gandini, Francesca, additional, Cardinali, Irene, additional, Lancioni, Hovirag, additional, Huber, Gabriela, additional, Xavier, Catarina, additional, Pala, Maria, additional, Fichera, Alessandro, additional, Schnaller, Lisa, additional, Gysi, Mario, additional, Sarno, Stefania, additional, Pettener, Davide, additional, Luiselli, Donata, additional, Richards, Martin B., additional, Semino, Ornella, additional, Achilli, Alessandro, additional, Torroni, Antonio, additional, and Parson, Walther, additional

Published
2022
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31. The Mitogenome Relationships and Phylogeography of Barn Swallows (Hirundo rustica)

Author

Lombardo, Gianluca, primary, Rambaldi Migliore, Nicola, additional, Colombo, Giulia, additional, Capodiferro, Marco Rosario, additional, Formenti, Giulio, additional, Caprioli, Manuela, additional, Moroni, Elisabetta, additional, Caporali, Leonardo, additional, Lancioni, Hovirag, additional, Secomandi, Simona, additional, Gallo, Guido Roberto, additional, Costanzo, Alessandra, additional, Romano, Andrea, additional, Garofalo, Maria, additional, Cereda, Cristina, additional, Carelli, Valerio, additional, Gillespie, Lauren, additional, Liu, Yang, additional, Kiat, Yosef, additional, Marzal, Alfonso, additional, López-Calderón, Cosme, additional, Balbontín, Javier, additional, Mousseau, Timothy A., additional, Matyjasiak, Piotr, additional, Møller, Anders Pape, additional, Semino, Ornella, additional, Ambrosini, Roberto, additional, Bonisoli-Alquati, Andrea, additional, Rubolini, Diego, additional, Ferretti, Luca, additional, Achilli, Alessandro, additional, Gianfranceschi, Luca, additional, Olivieri, Anna, additional, and Torroni, Antonio, additional

Published
2022
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33. Mitochondrial genomes from modern horses reveal the major haplogroups that underwent domestication

Author

Achilli, Alessandro, Olivieri, Anna, Soares, Pedro, Lancioni, Hovirag, Kashani, Baharak Hooshiar, Perego, Ugo A., Nergadze, Solomon G., Carossa, Valeria, Santagostino, Marco, Capomaccio, Stefano, Felicetti, Michela, Al-Achkar, Walid, Penedo, M. Cecilia T., Verini-Supplizi, Andrea, Houshmand, Massoud, Woodward, Scott R., Semino, Ornella, Silvestrelli, Maurizio, Giulotto, Elena, Pereira, Luísa, Bandelt, Hans-Jürgen, and Torroni, Antonio

Published
2012

35. Overview of the Americas’ First Peopling from a Patrilineal Perspective: New Evidence from the Southern Continent

Author

Colombo, Giulia, primary, Traverso, Luca, additional, Mazzocchi, Lucia, additional, Grugni, Viola, additional, Rambaldi Migliore, Nicola, additional, Capodiferro, Marco Rosario, additional, Lombardo, Gianluca, additional, Flores, Rodrigo, additional, Karmin, Monika, additional, Rootsi, Siiri, additional, Ferretti, Luca, additional, Olivieri, Anna, additional, Torroni, Antonio, additional, Martiniano, Rui, additional, Achilli, Alessandro, additional, Raveane, Alessandro, additional, and Semino, Ornella, additional

Published
2022
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36. Mitochondrial DNA Footprints from Western Eurasia in Modern Mongolia

Author

Cardinali, Irene, primary, Bodner, Martin, additional, Capodiferro, Marco Rosario, additional, Amory, Christina, additional, Rambaldi Migliore, Nicola, additional, Gomez, Edgar J., additional, Myagmar, Erdene, additional, Dashzeveg, Tumen, additional, Carano, Francesco, additional, Woodward, Scott R., additional, Parson, Walther, additional, Perego, Ugo A., additional, Lancioni, Hovirag, additional, and Achilli, Alessandro, additional

Published
2022
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37. Origin and spread of human mitochondrial DNA haplogroup U7

Author

Sahakyan, Hovhannes, Hooshiar Kashani, Baharak, Tamang, Rakesh, Kushniarevich, Alena, Francis, Amirtharaj, Costa, Marta D, Pathak, Ajai Kumar, Khachatryan, Zaruhi, Sharma, Indu, van Oven, Mannis, Parik, Jüri, Hovhannisyan, Hrant, Metspalu, Ene, Pennarun, Erwan, Karmin, Monika, Tamm, Erika, Tambets, Kristiina, Bahmanimehr, Ardeshir, Reisberg, Tuuli, Reidla, Maere, Achilli, Alessandro, Olivieri, Anna, Gandini, Francesca, Perego, Ugo A., Al-Zahery, Nadia, Houshmand, Massoud, Sanati, Mohammad Hossein, Soares, Pedro, Rai, Ekta, Šarac, Jelena, Šarić, Tena, Sharma, Varun, Pereira, Luisa, Fernandes, Veronica, Černý, Viktor, Farjadian, Shirin, Singh, Deepankar Pratap, Azakli, Hülya, Üstek, Duran, Ekomasova (Trofimova), Natalia, Kutuev, Ildus, Litvinov, Sergei, Bermisheva, Marina, Khusnutdinova, Elza K., Rai, Niraj, Singh, Manvendra, Singh, Vijay Kumar, Reddy, Alla G., Tolk, Helle-Viivi, Cvjetan, Svjetlana, Lauc, Lovorka Barac, Rudan, Pavao, Michalodimitrakis, Emmanuel N., Anagnou, Nicholas P., Pappa, Kalliopi I., Golubenko, Maria V., Orekhov, Vladimir, Borinskaya, Svetlana A, Kaldma, Katrin, Schauer, Monica A., Simionescu, Maya, Gusar, Vladislava, Grechanina, Elena, Govindaraj, Periyasamy, Voevoda, Mikhail, Damba, Larissa, Sharma, Swarkar, Singh, Lalji, Semino, Ornella, Behar, Doron M., Yepiskoposyan, Levon, Richards, Martin B., Metspalu, Mait, Kivisild, Toomas, Thangaraj, Kumarasamy, Endicott, Phillip, Chaubey, Gyaneshwer, Torroni, Antonio, and Villems, Richard

Published
2017
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39. Timing of a Back-Migration into Africa [with Response]

Author

Forster, Peter, Romano, Valentino, Olivieri, Anna, Achilli, Alessandro, Pala, Maria, Battaglia, Vincenza, Fornarino, Simona, Al-Zahery, Nadia, Scozzari, Rosaria, Cruciani, Fulvio, Behar, Doron M., Dugoujon, Jean-Michel, Coudray, Clotilde, Santachiara-Benerecetti, A. Silvana, Semino, Ornella, Bandelt, Hans-Jürgen, and Torroni, Antonio

Published
2007

40. The mtDNA Legacy of the Levantine Early Upper Palaeolithic in Africa

Author

Olivieri, Anna, Achilli, Alessandro, Pala, Maria, Battaglia, Vincenza, Fornarino, Simona, Al-Zahery, Nadia, Scozzari, Rosaria, Cruciani, Fulvio, Behar, Doron M., Dugoujon, Jean-Michel, Coudray, Clotilde, Santachiara-Benerecetti, A. Silvana, Semino, Ornella, Bandelt, Hans-Jürgen, and Torroni, Antonio

Published
2006
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41. Weaving Mitochondrial DNA and Y-Chromosome Variation in the Panamanian Genetic Canvas

Author

Rambaldi Migliore, Nicola, primary, Colombo, Giulia, additional, Capodiferro, Marco Rosario, additional, Mazzocchi, Lucia, additional, Chero Osorio, Ana Maria, additional, Raveane, Alessandro, additional, Tribaldos, Maribel, additional, Perego, Ugo Alessandro, additional, Mendizábal, Tomás, additional, Montón, Alejandro García, additional, Lombardo, Gianluca, additional, Grugni, Viola, additional, Garofalo, Maria, additional, Ferretti, Luca, additional, Cereda, Cristina, additional, Gagliardi, Stella, additional, Cooke, Richard, additional, Smith-Guzmán, Nicole, additional, Olivieri, Anna, additional, Aram, Bethany, additional, Torroni, Antonio, additional, Motta, Jorge, additional, Semino, Ornella, additional, and Achilli, Alessandro, additional

Published
2021
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42. Evaluating the Impact of Sex-Biased Genetic Admixture in the Americas through the Analysis of Haplotype Data

Author

Ongaro, Linda, primary, Molinaro, Ludovica, additional, Flores, Rodrigo, additional, Marnetto, Davide, additional, Capodiferro, Marco R., additional, Alarcón-Riquelme, Marta E., additional, Moreno-Estrada, Andrés, additional, Mabunda, Nedio, additional, Ventura, Mario, additional, Tambets, Kristiina, additional, Achilli, Alessandro, additional, Capelli, Cristian, additional, Metspalu, Mait, additional, Pagani, Luca, additional, and Montinaro, Francesco, additional

Published
2021
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43. The Mitochondrial DNA Landscape of Modern Mexico

Author

Bodner, Martin, primary, Perego, Ugo A., additional, Gomez, J. Edgar, additional, Cerda-Flores, Ricardo M., additional, Rambaldi Migliore, Nicola, additional, Woodward, Scott R., additional, Parson, Walther, additional, and Achilli, Alessandro, additional

Published
2021
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45. Additional file 8 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Author

Formenti, Giulio, Arang Rhie, Balacco, Jennifer, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Brown, Samara, Capodiferro, Marco Rosario, Al-Ajli, Farooq O., Ambrosini, Roberto, Houde, Peter, Koren, Sergey, Oliver, Karen, Smith, Michelle, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Corton, Craig, Bista, Iliana, Torrance, James, Tracey, Alan, Wood, Jonathan, Uliano-Silva, Marcela, Howe, Kerstin, McCarthy, Shane, Winkler, Sylke, Woori Kwak, Korlach, Jonas, Arkarachai Fungtammasan, Fordham, Daniel, Costa, Vania, Mayes, Simon, Chiara, Matteo, Horner, David S., Myers, Eugene, Durbin, Richard, Achilli, Alessandro, Braun, Edward L., Phillippy, Adam M., and Jarvis, Erich D.

Abstract

Additional file 8: Supplementary Note 1. Relationship between mtDNA sequencing, coverage and genome size.

Published
2021
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46. Additional file 12 of Complete vertebrate mitogenomes reveal widespread repeats and gene duplications

Author

Formenti, Giulio, Arang Rhie, Balacco, Jennifer, Haase, Bettina, Mountcastle, Jacquelyn, Fedrigo, Olivier, Brown, Samara, Capodiferro, Marco Rosario, Al-Ajli, Farooq O., Ambrosini, Roberto, Houde, Peter, Koren, Sergey, Oliver, Karen, Smith, Michelle, Skelton, Jason, Betteridge, Emma, Dolucan, Jale, Corton, Craig, Bista, Iliana, Torrance, James, Tracey, Alan, Wood, Jonathan, Uliano-Silva, Marcela, Howe, Kerstin, McCarthy, Shane, Winkler, Sylke, Woori Kwak, Korlach, Jonas, Arkarachai Fungtammasan, Fordham, Daniel, Costa, Vania, Mayes, Simon, Chiara, Matteo, Horner, David S., Myers, Eugene, Durbin, Richard, Achilli, Alessandro, Braun, Edward L., Phillippy, Adam M., and Jarvis, Erich D.

Abstract

Additional file 12. Review history.

Published
2021
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47. Archaeogenomic distinctiveness of the Isthmo-Colombian area

Author

Capodiferro, Marco Rosario, primary, Aram, Bethany, additional, Raveane, Alessandro, additional, Rambaldi Migliore, Nicola, additional, Colombo, Giulia, additional, Ongaro, Linda, additional, Rivera, Javier, additional, Mendizábal, Tomás, additional, Hernández-Mora, Iosvany, additional, Tribaldos, Maribel, additional, Perego, Ugo Alessandro, additional, Li, Hongjie, additional, Scheib, Christiana Lyn, additional, Modi, Alessandra, additional, Gòmez-Carballa, Alberto, additional, Grugni, Viola, additional, Lombardo, Gianluca, additional, Hellenthal, Garrett, additional, Pascale, Juan Miguel, additional, Bertolini, Francesco, additional, Grieco, Gaetano Salvatore, additional, Cereda, Cristina, additional, Lari, Martina, additional, Caramelli, David, additional, Pagani, Luca, additional, Metspalu, Mait, additional, Friedrich, Ronny, additional, Knipper, Corina, additional, Olivieri, Anna, additional, Salas, Antonio, additional, Cooke, Richard, additional, Montinaro, Francesco, additional, Motta, Jorge, additional, Torroni, Antonio, additional, Martín, Juan Guillermo, additional, Semino, Ornella, additional, Malhi, Ripan Singh, additional, and Achilli, Alessandro, additional

Published
2021
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49. Mitochondrial haplogroup U5b3: a distant echo of the epipaleolithic in Italy and the legacy of the early Sardinians

Author

Pala, Maria, Achilli, Alessandro, Olivieri, Anna, Kashani, Baharak Hooshiar, Perego, Ugo A., Sanna, Daria, Metspalu, Ene, Tambets, Kristiina, Tamm, Erika, Accetturo, Matteo, Carossa, Valeria, Lancioni, Hovirag, Panara, Fausto, Zimmermann, Bettina, Huber, Gabriela, Al-Zahery, Nadia, Brisighelli, Francesca, Woodward, Scott R., Francalacci, Paolo, Salas, Antonio, Parson, Walther, Behar, Doron M., Villems, Richard, Semino, Ornella, Bandelt, Hans-Jurgen, and Torroni, Antonio

Subjects
Sardinians -- Genetic aspects, Sardinians -- Demographic aspects, Y chromosome -- Research, Mitochondrial DNA -- Research, Human evolution -- Research, Haplotypes -- Analysis, Biological sciences
Abstract

The distribution and extent of variation of Sardinian Y chromosome halogroup in European population and the importance of Franco-Cantabrian refugium is discussed

Published
2009

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