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64 results on '"Jamshidi N"'

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1. Insight into human alveolar macrophage and M. tuberculosis interactions via metabolic reconstructions.

2. Using in silico models to simulate dual perturbation experiments: procedure development and interpretation of outcomes.

3. Current State, Challenges, and Opportunities in Genome-Scale Resource Allocation Models: A Mathematical Perspective.

4. A Protocol for the Automatic Construction of Highly Curated Genome-Scale Models of Human Metabolism.

5. Towards the human nasal microbiome: Simulating D. pigrum and S. aureus.

6. Project-based learning course on metabolic network modelling in computational systems biology.

7. Computational Biology and Machine Learning Approaches to Understand Mechanistic Microbiome-Host Interactions.

8. History and Future Perspectives on the Discipline of Quantitative Systems Pharmacology Modeling and Its Applications.

9. Flux prediction using artificial neural network (ANN) for the upper part of glycolysis.

10. Analysis of Predicted Host–Parasite Interactomes Reveals Commonalities and Specificities Related to Parasitic Lifestyle and Tissues Tropism.

11. Systems Biology Approaches Toward Understanding Primary Mitochondrial Diseases.

12. A community-driven global reconstruction of human metabolism

13. Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes.

14. Traceability, reproducibility and wiki-exploration for “à-la-carte” reconstructions of genome-scale metabolic models.

15. Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells.

16. Parameter identifiability-based optimal observation remedy for biological networks.

17. Improved Metabolic Models for E. coli and Mycoplasma genitalium from GlobalFit, an Algorithm That Simultaneously Matches Growth and Non-Growth Data Sets.

18. EGFR Signal-Network Reconstruction Demonstrates Metabolic Crosstalk in EMT.

19. Genome-Scale Model Reveals Metabolic Basis of Biomass Partitioning in a Model Diatom.

20. PSAMM: A Portable System for the Analysis of Metabolic Models.

21. COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project.

22. Computational Analysis of Reciprocal Association of Metabolism and Epigenetics in the Budding Yeast: A Genome-Scale Metabolic Model (GSMM) Approach.

23. Comparative Analysis and Modeling of the Severity of Steatohepatitis in DDC-Treated Mouse Strains.

24. A Systems Approach to Predict Oncometabolites via Context-Specific Genome-Scale Metabolic Networks.

25. Of Monkeys and Men: A Metabolomic Analysis of Static and Dynamic Urinary Metabolic Phenotypes in Two Species.

26. A computational study of the Warburg effect identifies metabolic targets inhibiting cancer migration.

27. Integrating Transcriptomics with Metabolic Modeling Predicts Biomarkers and Drug Targets for Alzheimer's Disease.

28. Prioritizing Candidate Disease Metabolites Based on Global Functional Relationships between Metabolites in the Context of Metabolic Pathways.

29. In-Silico Prediction of Key Metabolic Differences between Two Non-Small Cell Lung Cancer Subtypes.

30. Multi-Tissue Computational Modeling Analyzes Pathophysiology of Type 2 Diabetes in MKR Mice.

31. Identification of Metabolic Pathways Essential for Fitness of Salmonella Typhimurium In Vivo.

32. Variability of Metabolite Levels Is Linked to Differential Metabolic Pathways in Arabidopsis's Responses to Abiotic Stresses.

33. Augmenting Microarray Data with Literature-Based Knowledge to Enhance Gene Regulatory Network Inference.

34. A Predictive Model of the Dynamics of Body Weight and Food Intake in Rats Submitted to Caloric Restrictions.

35. Towards Structural Systems Pharmacology to Study Complex Diseases and Personalized Medicine.

36. Maximal Sum of Metabolic Exchange Fluxes Outperforms Biomass Yield as a Predictor of Growth Rate of Microorganisms.

37. k-OptForce: Integrating Kinetics with Flux Balance Analysis for Strain Design.

38. Gene Duplication and Phenotypic Changes in the Evolution of Mammalian Metabolic Networks.

39. Path2Models: large-scale generation of computational models from biochemical pathway maps.

40. Flux Imbalance Analysis and the Sensitivity of Cellular Growth to Changes in Metabolite Pools.

41. To Supplement or Not to Supplement: A Metabolic Network Framework for Human Nutritional Supplements.

42. Predicting Network Activity from High Throughput Metabolomics.

43. Genome-Scale Modeling of the Protein Secretory Machinery in Yeast

44. A Systems-Level Approach for Investigating Pseudomonas aeruginosa Biofilm Formation.

45. Shrinking the Metabolic Solution Space Using Experimental Datasets.

46. CardioNet: A human metabolic network suited for the study of cardiomyocyte metabolism.

47. Genetic Co-Occurrence Network across Sequenced Microbes.

48. A Whole-Body Model for Glycogen Regulation Reveals a Critical Role for Substrate Cycling in Maintaining Blood Glucose Homeostasis.

49. Reconciliation of Genome-Scale Metabolic Reconstructions for Comparative Systems Analysis.

50. HepatoNet1: a comprehensive metabolic reconstruction of the human hepatocyte for the analysis of liver physiology.

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