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Corals are sessile invertebrates living underwater in colorful structures known as reefs. Unfortunately, coral's temperature sensitivity is causing color bleaching, which hosts organisms that are crucial and consequently affect marine pharmacognosy. To address this problem, many researchers are developing cures and treatment procedures to restore bleached corals. However, before the cure, the researchers need to precisely localize the bleached corals in the Great Barrier Reef. The researchers have developed various visual classification frameworks to localize bleached corals. However, the performance of those techniques degrades with variations in illumination, orientation, scale, and view angle. In this paper, we develop highly noise-robust and invariant robust localization using bag-of-hybrid visual features (RL-BoHVF) for bleached corals by employing the AlexNet DNN and ColorTexture handcrafted by raw features. It is observed that the overall dimension is reduced by using the bag-of-feature method while achieving a classification accuracy of 96.20% on the balanced dataset collected from the Great Barrier Reef of Australia. Furthermore, the localization performance of the proposed model was evaluated on 342 images, which include both train and test segments. The model achieved superior performance compared to other standalone and hybrid DNN and handcrafted models reported in the literature. [ABSTRACT FROM AUTHOR]

Environmental damage has been of much concern, particularly in coastal areas and the oceans, given climate change and the drastic effects of pollution and extreme climate events. Our present-day analytical capabilities, along with advancements in information acquisition techniques such as remote sensing, can be utilised for the management and study of coral reef ecosystems. In this paper, we present Reef-Insight, an unsupervised machine learning framework that features advanced clustering methods and remote sensing for reef habitat mapping. Our framework compares different clustering methods for reef habitat mapping using remote sensing data. We evaluate four major clustering approaches based on qualitative and visual assessments which include k-means, hierarchical clustering, Gaussian mixture model, and density-based clustering. We utilise remote sensing data featuring the One Tree Island reef in Australia's Southern Great Barrier Reef. Our results indicate that clustering methods using remote sensing data can well identify benthic and geomorphic clusters in reefs when compared with other studies. Our results indicate that Reef-Insight can generate detailed reef habitat maps outlining distinct reef habitats and has the potential to enable further insights for reef restoration projects. [ABSTRACT FROM AUTHOR]

The use of ocean colour classification algorithms, linked to water quality gradients, can be a useful tool for mapping river plumes in both tropical and temperate systems. This approach has been applied in operational water quality programs in the Great Barrier Reef to map river plumes and assess trends in marine water composition and ecosystem health during flood periods. In this study, we used the Forel–Ule colour classification algorithm for Sentinel-3 OLCI imagery in an automated process to map monthly, annual and long-term plume movement in the temperate coastal system of Liverpool Bay (UK). We compared monthly river plume extent to the river flow and in situ water quality data between 2017–2020. The results showed a strong positive correlation (Spearman's rho = 0.68) between the river plume extent and the river flow and a strong link between the FUI defined waterbodies and nutrients, SPM, turbidity and salinity, hence the potential of the Forel–Ule index to act as a proxy for water quality in the temperate Liverpool Bay water. The paper discusses how the Forel–Ule index could be used in operational water quality programs to better understand river plumes and the land-based inputs to the coastal zones in UK waters, drawing parallels with methods that have been developed in the GBR and Citclops project. Overall, this paper provides the first insight into the systematic long-term river plume mapping in UK coastal waters using a fast, cost-effective, and reproducible workflow. The study created a novel water assessment typology based on the common physical, chemical and biological ocean colour properties captured in the Forel–Ule index, which could replace the more traditional eutrophication assessment regions centred around strict geographic and political boundaries. Additionally, the Forel–Ule assessment typology is particularly important since it identifies areas of the greatest impact from the land-based loads into the marine environment, and thus potential risks to vulnerable ecosystems. [ABSTRACT FROM AUTHOR]

Achieving coastal and shallow-water bathymetry is essential for understanding the marine environment and for coastal management. Bathymetric data in shallow sea areas can currently be obtained using SDB (satellite-derived bathymetry) with multispectral satellites based on depth inversion models. In situ bathymetric data are crucial for validating empirical models but are currently limited in remote and unapproachable areas. In this paper, instead of using the measured water depth data, ICESat-2 (Ice, Cloud, and Land Elevation Satellite-2) ATL03 bathymetric points at different acquisition dates and multispectral imagery from Sentinel-2/GeoEye-1 were used to train and evaluate water depth inversion empirical models in two study regions: Shanhu Island in the South China Sea, and Heron Island in the Great Barrier Reef (GBR) in Australia. However, different sediment types also influenced the SDB results. Therefore, three types of sediments (sand, reef, and coral/algae) were analyzed for Heron Island, and four types of sediments (sand, reef, rubble and coral/algae) were analyzed for Shanhu Island. The results show that accuracy generally improved when sediment classification information was considered in both study areas. For Heron Island, the sand sediments showed the best performance in both models compared to the other sediments, with mean R2 and RMSE values of 0.90 and 1.52 m, respectively, representing a 5.6% improvement of the latter metric. For Shanhu Island, the rubble sediments showed the best accuracy in both models, and the average R2 and RMSE values were 0.97 and 0.65 m, respectively, indicating an RMSE improvement of 15.5%. Finally, bathymetric maps were generated in two regions based on the sediment classification results. [ABSTRACT FROM AUTHOR]

Highlights • Ecosystem health report card for the largest port in the Great Barrier Reef. • Social, cultural, economic and environmental indicators of harbour health. • Innovative reporting infrastructure to ensure transparency and timely results. • Stakeholder-led vision underpinned by rigorous science and strong communication. Abstract Ecosystem health report cards are an increasingly popular means of summarizing the results of environmental monitoring programs for broad, non-scientific audiences. This paper describes a whole-of-system report card initiative developed to monitor the condition of a multi-use port in the Great Barrier Reef World Heritage Area, Queensland, Australia. Concerns over the impacts of major industrial expansion, fish health incidents, safety of recreational harbour users and habitat loss prompted stakeholders in the Gladstone region to unite and establish the Gladstone Healthy Harbour Partnership. The objective was to monitor and report on the health of the harbour via an annual report card (http://rc.ghhp.org.au/). We illustrate one approach to designing a report card against ten core considerations; 1) strong links to all stakeholders at all stages, 2) rigorous science, 3) effective communication, 4) setting clear goals and 5) realistic expectations, 6) flexibility in implementation, 7) transparency, open access and accountability, 8) results linked to actionable management recommendations, 9) regular evaluation, and 10) long term commitment. Innovative aspects of this report card include the combination of four components of harbour health: environmental, social, cultural and economic; underpinned by a sophisticated monitoring, modelling and reporting program. A review of the report card content and methodology, conducted in 2017, determined that the design meets the original vision and objectives set by Gladstone stakeholders. However, stakeholder perceptions of the effectiveness of the report card have not been comprehensively assessed to date. This paper provides a guide to others designing report card programs and environmental metrics, with advice on maximizing transparency and data sharing, coordinating otherwise disparate monitoring efforts, and linking with management through the provision of scenario analysis tools with which to interpret and respond to annual report card results. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef has become one of the latest casualties of the climate crisis, suffering mass coral mortalities following three marine heat waves since 2016. Two new papers untangle the cumulative effects of these disturbances on the reef's resilience. [ABSTRACT FROM AUTHOR]

Coral bleaching driven by ocean warming is one of the most visible ecological impacts of climate change and perhaps the greatest threat to the persistence of reefs in the coming decades. In the absence of returning atmospheric greenhouse gas concentrations to those compatible with ocean temperatures below the mass coral bleaching temperature thresholds, the most straightforward means to reduce thermal-stress induced bleaching is to cool water at the seabed. The feasibility of reducing the seabed temperature through cool-water injections is considered first by analysing the feasibility of doing so on 19 reefs with differing physical environments using a simple residence time metric in 200 m resolution hydrodynamic model configurations. We then concentrate on the reefs around Lizard Island, the most promising candidate of the 19 locations, and develop a 40 m hydrodynamic model to investigate the effect of the injection of cool water at differing volumetric rates. Injecting 27°C seawater at a rate of 5 m³ s-1 at 4 sites in early 2017 cooled 97 ha of the reef by 0.15°C or more. The power required to pump 5 m³ s-1 through a set of pipes over a distance of 3 km from a nearby channel is*466 kW. This power applied at 4 sites for 3 months achieves a 2 Degree Heating Weeks (DHWs) reduction on 97 ha of reef. A more precise energy costing will require further expert engineering design of the pumping equipment and energy sources. Even for the most physically favourable reefs, cool-water transported through pipes and injected at a reef site is energy expensive and cannot be scaled up to any meaningful fraction of the 3,100 reefs of the GBR. Should priority be given to reducing thermal stress on one or a few high value reefs, this paper provides a framework to identify the most promising sites. [ABSTRACT FROM AUTHOR]

Since the mid-1990s, Australia's Commonwealth Science Industry and Research Organisation (CSIRO) has been developing a biogeochemical (BGC) model for coupling with a hydrodynamic and sediment model for application in estuaries, coastal waters and shelf seas. The suite of coupled models is referred to as the CSIRO Environmental Modelling Suite (EMS) and has been applied at tens of locations around the Australian continent. At a mature point in the BGC model's development, this paper presents a full mathematical description, as well as links to the freely available code and user guide. The mathematical description is structured into processes so that the details of new parameterisations can be easily identified, along with their derivation. In EMS, the underwater light field is simulated by a spectrally resolved optical model that calculates vertical light attenuation from the scattering and absorption of 20+ optically active constituents. The BGC model itself cycles carbon, nitrogen, phosphorous and oxygen through multiple phytoplankton, zooplankton, detritus and dissolved organic and inorganic forms in multiple water column and sediment layers. The water column is dynamically coupled to the sediment to resolve deposition, resuspension and benthic–pelagic biogeochemical fluxes. With a focus on shallow waters, the model also includes detailed representations of benthic plants such as seagrass, macroalgae and coral polyps. A second focus has been on, where possible, the use of geometric derivations of physical limits to constrain ecological rates. This geometric approach generally requires population-based rates to be derived from initially considering the size and shape of individuals. For example, zooplankton grazing considers encounter rates of one predator on a prey field based on summing relative motion of the predator with the prey individuals and the search area; chlorophyll synthesis includes a geometrically derived self-shading term; and the bottom coverage of benthic plants is calculated from their biomass using an exponential form derived from geometric arguments. This geometric approach has led to a more algebraically complicated set of equations when compared to empirical biogeochemical model formulations based on populations. But while being algebraically complicated, the model has fewer unconstrained parameters and is therefore simpler to move between applications than it would otherwise be. The version of EMS described here is implemented in the eReefs project that delivers a near-real-time coupled hydrodynamic, sediment and biogeochemical simulation of the Great Barrier Reef, northeast Australia, and its formulation provides an example of the application of geometric reasoning in the formulation of aquatic ecological processes. [ABSTRACT FROM AUTHOR]

In this paper, we propose a novel approach for 3-D rain field reconstruction using satellite signals. It uses the estimated signal-to-noise ratio (SNR) at the ground receivers for low-earth orbit (LEO) satellites and, thus, indirectly estimates the path-integrated rain attenuation of the microwave communication links. A least-squares algorithm is employed to perform the 3-D tomographic reconstruction of the rain field. The proposed system model consists of an LEO satellite with a realistic overpass trajectory and multiple ground receivers with SNR estimators. Two synthetic rain events near the Great Barrier Reef in Australia are used to test the reconstruction outcome. Simulation results suggest that the reconstructed rain field has close agreement with the synthetic rain field. [ABSTRACT FROM AUTHOR]

Natural ecosystems hold great place within the hearts and lives of people, particularly those within which people live and work. However, whether people equally value natural ecosystems that they regularly frequent is effectively unknown. Such knowledge would greatly assist natural resource managers to better understand what they are protecting, why and for whom. In this paper we look at the different values that people hold for different ecosystems within the Great Barrier Reef (GBR). We test the relationship between eight different cultural values (using ecosystem services framing), and the use of seven different ecosystems (beaches, creeks and estuaries, islands and cays, inshore reefs, mid-shelf and outer reefs, open water, and shipwrecks) from face-to-face surveys of 1934 residents living within the GBR. We also look at whether the relationships that people have with each ecosystem inspires them to; (i) do more to help protect the GBR, (ii) learn more about the GBR, and (iii) feel personally affected if the health of the GBR declines. Results suggest that there are common reasons why all ecosystems are valued. All seven ecosystems were valued because they provide identity, quality of life and well-being, and inspired people to do more to help protect the GBR. Many were valued for their desirable and active way of life, learning about the environment through scientific discoveries, and learning about the condition of the GBR. However, some ecosystems were valued for special reasons. People that used beaches tended to have more pride in the World Heritage Area status of the GBR and appreciated the aesthetics of the GBR. People that used the mid-shelf and open-water areas were more likely to value biodiversity and aesthetics qualities. People that used inshore reefs were more likely to value economic benefits from the GBR. All residents said that they would be personally affected if the health of the GBR declined, except for those that used beaches, creeks and estuaries. Levels of concern for each of the ecosystems within the GBR varied, where people were more concerned about inshore areas than they were about coral reef condition. Specifically, people were most concerned about the level of rubbish on the beaches in their region and least about mangroves. These results suggest that, even though the GBR is valued in its entirety for many reasons, the GBR is not perceived as an entire ecosystem, but that people have different relationships within it. We discuss how environmental sustainability might be optimised through understanding and incentivising the multi-functionality of landscapes. • The GBR contains many sub-ecosystems, which are valued by people to different extents. • People value all sub-ecosystems for identity, lifestyle and well-being, and for specific reasons. • People are more concerned about rubbish on beaches than coral reef condition. • All sub-ecosystems can inspire people to better protect them. • These results can help managers understand what they are protecting, why and for whom. [ABSTRACT FROM AUTHOR]

Since the mid 1990s, Australia's Commonwealth Science Industry and Research Organisation (CSIRO) has developed a biogeochemical (BGC) model for coupling with a hydrodynamic and sediment model for application in estuaries, coastal waters and shelf seas. The suite of coupled models is referred to as the CSIRO Environmental Modelling Suite (EMS) and has been applied at tens of locations around the Australian continent. At a mature point in the BGC model's development, this paper presents a full mathematical description, as well as links to the freely available code and User Guide. The mathematical description is structured into processes so that the details of new parameterisations can be easily identified, along with their derivation. The EMS BGC model cycles carbon, nitrogen, phosphorous and oxygen through multiple phytoplankton, zooplankton, detritus and dissolved organic and inorganic forms in multiple water column and sediment layers. The underwater light field is simulated by a spectrally-resolved optical model that includes the calculation of water-leaving reflectance for validation with remote sensing. The water column is dynamically coupled to the sediment to resolve deposition, resuspension and benthic-pelagic biogeochemical fluxes. With a focus on shallow waters, the model also includes particularly-detailed representations of benthic plants such as seagrass, macroalgae and coral polyps. A second focus has been on, where possible, the use of geometric derivations of physical limits to constrain ecological rates, which generally requires population-based rates to be derived from initially considering the size and shape of individuals. For example, zooplankton grazing considers encounter rates of one predator on a prey field based on summing relative motion of the predator with the prey individuals and the search area, chlorophyll synthesis includes a geometrically-derived self-shading term, and the bottom coverage of benthic plants is generically-related to their biomass using an exponential form derived from geometric arguments. This geometric approach has led to a more algebraically-complicated set of equations when compared to more empirical biogeochemical model formulations. But while being algebraically-complicated, the model has fewer unconstrained parameters and is therefore simpler to move between applications than it would otherwise be. The version of the biogeochemistry described here is implemented in the eReefs project that is delivering a near real time coupled hydrodynamic, sediment and biogeochemical simulation of the Great Barrier Reef, northeast Australia, and its formulation provides an example of the application of geometric reasoning in the formulation of aquatic ecological processes. [ABSTRACT FROM AUTHOR]

A key challenge in agri-environmental policy is to encourage agricultural producers to adopt better management practices to reduce adverse environmental impacts. Research attention around has focused on the underlying drivers of landholder actions and decisions, the costs and returns of improving management practices, and the effects of different policy mechanisms to achieve change. One potential barrier to changing management practices are the risks that agricultural producers may perceive to exist. Outcome risks relate to the possibility that a management change may not achieve environmental goals or anticipated production increases, while input risks relate to the possibility that the costs of management change turn out to be much higher than expected. These risks lead to perceptions of winners' curse, where producers are reluctant to adopt better management practices in case costs are higher and returns are lower than expected. In this paper we test the extent to which the willingness to implement environmental improvements are limited by conservation outcome risks or input risks, using a choice experiment in workshops with landholders. Our case study involved projects to reduce gully erosion and subsequent sediment run-off which it attributed to inshore reef health decline in catchments adjacent to the Great Barrier Reef. • Low levels of landholder participation in agri-environmental programs can be attributed to input and output risks. • Landholder participation is based on their perceived risks of not receiving enough funds to cover the true costs involved. • Risk can be classified as input risk and output risk. • Input risk is the risk that costs associated with implementing the management practice or project is higher than expected. • Output risk is the risk that the project does not result in the expected conservation or production outcomes. • Using choice modelling to capture the input and output risk workshops were run with landholders. • The results demonstrated the importance of both however output risk limited participation more than input risk. [ABSTRACT FROM AUTHOR]

Introduction: Natural resource management uses expert judgement to estimate facts that inform important decisions. Unfortunately, expert judgement is often derived by informal and largely untested protocols, despite evidence that the quality of judgements can be improved with structured approaches. We attribute the lack of uptake of structured protocols to the dearth of illustrative examples that demonstrate how they can be applied within pressing time and resource constraints, while also improving judgements. Aims and methods: In this paper, we demonstrate how the IDEA protocol for structured expert elicitation may be deployed to overcome operational challenges while improving the quality of judgements. The protocol was applied to the estimation of 14 future abiotic and biotic events on the Great Barrier Reef, Australia. Seventy-six participants with varying levels of expertise related to the Great Barrier Reef were recruited and allocated randomly to eight groups. Each participant provided their judgements using the four-step question format of the IDEA protocol (‘Investigate’, ‘Discuss’, ‘Estimate’, ‘Aggregate’) through remote elicitation. When the events were realised, the participant judgements were scored in terms of accuracy, calibration and informativeness. Results and conclusions: The results demonstrate that the IDEA protocol provides a practical, cost-effective, and repeatable approach to the elicitation of quantitative estimates and uncertainty via remote elicitation. We emphasise that i) the aggregation of diverse individual judgements into pooled group judgments almost always outperformed individuals, and ii) use of a modified Delphi approach helped to remove linguistic ambiguity, and further improved individual and group judgements. Importantly, the protocol encourages review, critical appraisal and replication, each of which is required if judgements are to be used in place of data in a scientific context. The results add to the growing body of literature that demonstrates the merit of using structured elicitation protocols. We urge decision-makers and analysts to use insights and examples to improve the evidence base of expert judgement in natural resource management. [ABSTRACT FROM AUTHOR]

There has been a strong push within natural resource management to incorporate spatial structure into management regimes. However, discussions surrounding the appropriate designs of spatial management have largely been conceptual. This paper develops a spatial econometric model of fishing location choice using non-confidential data from the Great Barrier Reef coral trout commercial fishery. Harvest location decisions are modeled as a function of spatial patterns of expected economic returns. The preferred spatially dependent econometric model is shown to outperform ordinary least squares and fixed effects models in out-of-sample forecasting. Estimates from the spatial model reveal spatial spillover effects in fleet harvest location behavior. In particular, harvest activity at any given site is equally sensitive to same-site economic returns and surrounding-site economic returns. The econometric results are illustrated using a fee-based policy simulation. Results suggest non-spatial management is characterized by two inefficiencies. First, heterogeneity between sites is averaged, resulting a fee that is too high or too low across space. Second, fees that are too high or too low affect the fishing effort in nearby locations. [ABSTRACT FROM AUTHOR]

The decline in health of the Great Barrier Reef and the pressure on allocating funds efficiently has increased efforts to prioritise where public funds are invested. The Fitzroy basin and coastal catchments is 152,000 square kilometres and geographically diverse. Past work has identified that sediment loads leaving the catchment are posing a high risk to the ongoing health of the Reef and that there is a need to prioritise funds to achieve cost effective outcomes. In this paper we aim to present an alternative approach to effective prioritisation of sediment reductions. The approach integrates spatial information regarding the sediment source and process, levels of adoption, bare ground cover, and cost into a function to rank neighbourhood catchments. The results demonstrate the complexity of the issue and the challenge the Fitzroy Basin Association faces when allocating funds. They also illustrate that there are effective opportunities in particular priority areas within the catchment in which on-ground actions could be undertaken, proving it to be a useful approach in prioritising future investments aimed at achieving cost effective sediment reductions to the Reef. [ABSTRACT FROM AUTHOR]

Aim Increasingly frequent and intense disturbances of many kinds are reducing the populations of habitat-forming species. For example, disturbances, including coral bleaching, storms and cyclones, coral disease and Crown-of-Thorns starfish (CoTS) outbreaks, have been important contributors to the global decline of coral populations. Understanding these the effects of such disturbances is challenging but necessary for their effective management. In this paper, we provide a novel spatially and temporally explicit perspective on the role of multiple and interacting disturbances on population dynamics. Location Great Barrier Reef (GBR), Australia. Time period 1995-2011. Major taxa studied Acropora species. Methods A semi-parametric Bayesian hierarchical model was used to estimate the form and strength of the cumulative effects of multiple disturbances that have affected coral populations at different locations, frequencies and intensities, and in different orders over 16 years. Boosted regression trees and random forest models were used to rank the relative importance of four types of disturbances in reducing the ability of coral populations to recover following disturbance. Results We show that while all the disturbance agents examined had clear negative impacts, coral predation by CoTS was the strongest contributor to the decline of coral cover and resilience of coral populations. The effects of multiple disturbances on individual reef sites were overwhelmingly additive. Main conclusions Reduction of coral predation through control of CoTS could substantially reduce the severity of disturbances along the GBR and promote greater resilience, and thereby recovery, of coral populations. [ABSTRACT FROM AUTHOR]

The state and trend of the Great Barrier Reef's (GBR's) ecological health remains problematic, influencing United Nations Educational, Scientific and Cultural Organization (UNESCO) statements regarding GBR governance. While UNESCO's concerns triggered separate strategic assessments by the Australian and Queensland governments, there has been no independent and integrated review of the key risks within the overall system of governance influencing GBR outcomes. As a case study of international significance, this paper applies Governance Systems Analysis (GSA), a novel analytical framework that identifies the governance themes, domains and subdomains most likely to influence environmental and socio-economic outcomes in complex natural systems. This GBR-focussed application of GSA identifies governance subdomains that present high, medium, or low risk of failure to produce positive outcomes for the Reef. This enabled us to determine that three “whole of system” governance problems could undermine GBR outcomes. First, we stress the integrative importance of the Long Term Sustainability Plan (LTSP) Subdomain. Sponsored by the Australian and Queensland governments, this subdomain concerns the primary institutional arrangements for coordinated GBR planning and delivery, but due to its recent emergence, it faces several internal governance challenges. Second, we find a major risk of implementation failure in the achievement of GBR water quality actions due to a lack of system-wide focus on building strong and stable delivery systems at catchment scale. Finally, we conclude that the LTSP Subdomain currently has too limited a mandate/capacity to influence several high-risk subdomains that have not been, but must be more strongly aligned with Reef management (e.g. the Greenhouse Gas Emission Management Subdomain ). Our analysis enables exploration of governance system reforms needed to address environmental trends in the GBR and reflects on the potential application of GSA in other complex land and sea-scapes across the globe. [ABSTRACT FROM AUTHOR]

Adaptation, as a strategy to respond to climate change, has limits: there are conditions under which adaptation strategies fail to alleviate impacts from climate change. Research has primarily focused on identifying absolute bio-physical limits. This paper contributes empirical insight to an emerging literature on the social limits to adaptation. Such limits arise from the ways in which societies perceive, experience and respond to climate change. Using qualitative data from multi-stakeholder workshops and key-informant interviews with representatives of the fisheries and tourism sectors of the Great Barrier Reef region, we identify psycho-social and structural limits associated with key adaptation strategies, and examine how these are perceived as more or less absolute across levels of organisation. We find that actors experience social limits to adaptation when: i) the effort of pursuing a strategy exceeds the benefits of desired adaptation outcomes; ii) the particular strategy does not address the actual source of vulnerability, and; iii) the benefits derived from adaptation are undermined by external factors. We also find that social limits are not necessarily more absolute at higher levels of organisation: respondents perceived considerable opportunities to address some psycho-social limits at the national-international interface, while they considered some social limits at the local and regional levels to be effectively absolute. [ABSTRACT FROM AUTHOR]

The high importance of bathymetric character for many processes on reefs means that high-resolution bathymetric models are commonly needed by marine scientists and coastal managers. Empirical and optimisation methods provide two approaches for deriving bathymetry from multispectral satellite imagery, which have been refined and widely applied to coral reefs over the last decade. This paper compares these two approaches by means of a geographical error analysis for two sites on the Great Barrier Reef: Lizard Island (a continental island fringing reef) and Sykes Reef (a planar platform reef). The geographical distributions of model residuals (i.e., the difference between modelled and measured water depths) are mapped, and their spatial autocorrelation is calculated as a basis for comparing the performance of the bathymetric models. Comparisons reveal consistent geographical properties of errors arising from both models, including the tendency for positive residuals (i.e., an under-prediction of depth) in shallower areas and negative residuals in deeper areas (i.e., an over-prediction of depth) and the presence of spatial autocorrelation in model errors. A spatial error model is used to generate more reliable estimates of bathymetry by quantifying the spatial structure (autocorrelation) of model error and incorporating this into an improved regression model. Spatial error models improve bathymetric estimates derived from both methods. [ABSTRACT FROM AUTHOR]

Low-lying reef islands are among the most vulnerable environments on earth to anthropogenic-induced climate change and sea-level rise over the next century because they are low, composed of unconsolidated sediment that is able to be mobilised by waves and currents, and depend on sediments supplied by reef organisms that are particularly sensitive to environmental changes (e.g. ocean temperatures and chemistry). Therefore, the spatial and temporal links between active carbonate production and island formation and dynamics are fundamental to predicting future island resilience, yet remain poorly quantified. In this paper we present results of a detailed geomorphological and sedimentological study of a reef and sand cay on the northern Great Barrier Reef. We provide an empirical investigation of the temporal linkages between sediment production and reef island development using a large collection of single grain AMS 14C dates. Large benthic foraminifera (LBF) are the single most important contributor to contemporary island sand mass (47%; ranging from 36% to 63%) at Raine Island, reflecting rapid rates of sediment production and delivery. Standing stock data reveal extremely high production rates on the reef (1.8 kg m-2 yr-1), while AMS 14C dates of single LBF tests indicate rapid rates of sediment transferral across the reef. We also demonstrate that age is statistically related to preservation and taphonomic grade (severely abraded tests > moderately abraded tests > pristine tests). We construct a contemporary reef and island sediment budget model for Raine Island that shows that LBF (Baculogypsina, Marginopora and Amphistegina) contribute 55% of the sediment produced on the reef annually, of which a large proportion (54%) contribute to the net annual accretion of the island. The tight temporal coupling between LBF growth and island sediment supply combined with the sensitivity of LBF to bleaching and ocean acidification suggests that islands dominated by LBF are likely to be very sensitive to short and long term climate change projections. Potential outcomes of this work relate to improving the understanding of the future change dynamics of reef islands in response to climate change. [ABSTRACT FROM AUTHOR]

Spur and groove features occur on the seaward reef slope of coral reefs around the world. They are believed to act as important natural breakwaters, regulating the hydrodynamic energy and nutrients received by reef platforms. They also represent one of the most diverse and productive zones of modern reefs. However, the formation processes and morphodynamics of spur and groove systems are poorly understood, particularly in the Great Barrier Reef (GBR). This paper constitutes the first broad scale analysis of spur and groove systems in the Capricorn Bunker Group (CBG) in the southern GBR. It uses remotely sensed imagery coupled with ground-truthed data to measure groove length at four reefs (Wreck, Heron, One Tree and Lady Elliot). A total of 2621 grooves were digitised across the four study reefs. Groove length was found to vary both between and within the study reefs. The maximum groove length was 536 m. Average groove length ranged from 93 m at Wreck Reef to 32 m at Heron Reef. This data was compared to relative wave exposure estimates derived from the fetch scenario at each reef. Strong positive correlation was found with groove length increasing as wave exposure increased. Groove length was highly spatially dependant and varied around the reef platforms according to the degree of wave exposure. The longest grooves were found on the most exposed, eastern sides of all reefs. These results provide valuable insight into spur and groove function, formation and likely response to future environmental changes in the CBG and further afield. [ABSTRACT FROM AUTHOR]

Duce, S., Vila-Concejo, A., Hamylton, S., Bruce, E., Webster, J. M, 2014. Spur and groove distribution, morphology and relationship to relative wave exposure, Southern Great Barrier Reef, Australia. In: Green, A.N. and Cooper, J.A.G. (eds.), Proceedings 13th International Coastal Symposium (Durban, South Africa), Journal of Coastal Research, Special Issue No. 70, pp. 115-120, ISSN 0749-0208. Spur and groove features occur on the seaward reef slope of coral reefs around the world. They are believed to act as important natural breakwaters, regulating the hydrodynamic energy and nutrients received by reef platforms. They also represent one of the most diverse and productive zones of modern reefs. However, the formation processes and morphodynamics of spur and groove systems are poorly understood, particularly in the Great Barrier Reef (GBR). This paper constitutes the first broad scale analysis of spur and groove systems in the Capricorn Bunker Group (CBG) in the southern GBR. It uses remotely sensed imagery coupled with ground-truthed data to measure groove length at four reefs (Wreck, Heron, One Tree and Lady Elliot). A total of 2621 grooves were digitised across the four study reefs. Groove length was found to vary both between and within the study reefs. The maximum groove length was 536 m. Average groove length ranged from 93 m at Wreck Reef to 32 m at Heron Reef. This data was compared to relative wave exposure estimates derived from the fetch scenario at each reef. Strong positive correlation was found with groove length increasing as wave exposure increased. Groove length was highly spatially dependant and varied around the reef platforms according to the degree of wave exposure. The longest grooves were found on the most exposed, eastern sides of all reefs. These results provide valuable insight into spur and groove function, formation and likely response to future environmental changes in the CBG and further afield. [ABSTRACT FROM AUTHOR]

Public participation is experiencing increasing recognition as an indispensable component of effective communication and engagement between resource users and managers in natural resource planning and management. To bridge a gap between communication, information and participation, natural resource management agencies have increasingly used the visual capability of spatial decision support tools, such as geographic information systems. Nevertheless, both participation and the use of spatial technologies have been promoted without much consideration of how particular stakeholder groups participate and use existing decision support tools. This paper analyses the current state of public participation and the extent to which spatial data and geographic information tools are used by stakeholder groups to facilitate access to information and to support communication in water quality management on the Great Barrier Reef coast. Data were collected via document analysis, participant observation at stakeholders' meeting, face-to-face interviews and questionnaires. Qualitative data were coded for themes using coding analysis processes, whereas quantitative data from the surveys were analysed using standard exploratory and descriptive statistical techniques. Results reveal that reliance on the natural resource management officer, established networks and personal relationships, and provision of property-scale spatial information are important aspects of a meaningful public participation process. [ABSTRACT FROM AUTHOR]

Integrating people's values and perceptions into planning is essential for the successful management of natural resources. However, successful implementation of natural resources management decisions on the ground is a complex task, which requires a comprehensive understanding of a system's social and ecological linkages. This paper investigates the relationship between sense of place and people's attitudes towards their natural environment. Sense of place contributes towards shaping peoples'' beliefs, values and commitments. Here, we set out to explore how these theoretical contributions can be operationalized for natural resources management planning in the Great Barrier Reef region of Australia. We hypothesise that the region's diverse range of natural resources, conservation values and management pressures might be reflected in people's attachment to place. To tests this proposition, variables capturing socio-demographics, personal wellbeing and a potential for sense of place were collected via mail-out survey of 372 residents of the region, and tested for relationships using multivariate regression and redundancy orientation analyses. Results indicate that place of residence within the region, involvement in community activities, country of birth and the length of time respondents lived in the region are important determinants of the values assigned to factors related to the natural environment. This type of information is readily available from National Census and thus could be incorporated into the planning of community engagement strategies early in the natural resources management planning process. A better understanding of the characteristics that allow sense of place meanings to develop can facilitate a better understanding of people's perceptions towards environmental and biodiversity issues. We suggest that the insights gained from this study can benefit environmental decision making and planning in the Great Barrier Reef region; and that sense of place is a concept worthy of further investigation elsewhere. [Copyright &y& Elsevier]

Sea surface salinity (SSS) is critical for studying biological and physical processes in the ocean, such as the global water balance, ocean currents, and evaporation rates. The water and heat fluxes associated with precipitation and evaporation over global oceans are fundamental in regulating climate and weather. Yet measurements of global SSSs are sparse and do not show the required temporal and spatial variability of SSS distributions. Airborne microwave radiometers, such as the Scanning Low-Frequency Microwave Radiometer (SLFMR) and the Salinity, Temperature, and Roughness Remote Scanner (STARRS), have been used successfully to map SSS and its variability, but only in estuaries and coastal waters. Since 2009, SSS has been measured from satellite orbit by the European Soil Moisture and Ocean Salinity satellite, which is designed to provide synthesized SSS maps with a high accuracy. Other salinity-related satellites are being developed, such as Aquarius, which will provide the global view of salinity variability needed for climate studies. The objectives of this paper are to review remote sensing techniques for mapping SSS and to demonstrate the application of microwave radiometry by presenting two case studies. [ABSTRACT FROM AUTHOR]

Wireless Sensor Networks promised to do for observation systems what consumer electronics have done for areas like photography-drive down the price per observation (photograph), introduce new functionality and capabilities, and make, what had been a relatively exclusive set of technologies and capabilities, ubiquitous. While this may have been true for some terrestrial sensor networks there are issues in the marine environment that have limited the realization of ubiquitous cheap sensing. This paper reports on the lessons learned from two years of operation of wireless sensor networks deployed at seven coral reefs along the Great Barrier Reef in north-eastern Australia. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef Marine Park was established to provide for conservation and ecologically sustainable multiple use of 344,400 km of a large marine ecosystem. Management is based on multiple use, with zoning as a fundamental component of marine spatial planning. The legislative framework, including a specific Act and Regulations, address the objectives of ecosystem-based, integrated management of human uses and impacts consistent with best contemporary understanding of biological diversity. Zoning is one of a suite of management tools that include other spatial and temporal management tools and non-spatial measures including public education, community engagement, codes of environmental best practice, industry partnerships and economic instruments. The first section of the Great Barrier Reef Marine Park came into operation in 1981 and the most recent zoning came into operation in mid 2004. The paper discusses some common misunderstandings about zoning and identifies lessons that appear relevant for others addressing management and use of marine ecosystems and natural resources. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef Marine Park was established to provide for conservation and ecologically sustainable multiple use of 344,400 km of a large marine ecosystem. Management is based on multiple use, with zoning as a fundamental component of marine spatial planning. The legislative framework, including a specific Act and Regulations, address the objectives of ecosystem-based, integrated management of human uses and impacts consistent with best contemporary understanding of biological diversity. Zoning is one of a suite of management tools that include other spatial and temporal management tools and non-spatial measures including public education, community engagement, codes of environmental best practice, industry partnerships and economic instruments. The first section of the Great Barrier Reef Marine Park came into operation in 1981 and the most recent zoning came into operation in mid 2004. The paper discusses some common misunderstandings about zoning and identifies lessons that appear relevant for others addressing management and use of marine ecosystems and natural resources. [ABSTRACT FROM AUTHOR]

Collecting raw data from a wireless sensor network for environmental monitoring applications can be a difficult task due to the high energy consumption involved. This is especially difficult when the application requires specialized sensors that have very high energy consumption, e.g. hydrological sensors for monitoring marine environments. This paper introduces a technique for reducing energy consumption by minimizing sensor sampling operations. In addition, we illustrate how a randomized algorithm can be used to improve temporal coverage such that the time between the occurrence of an event and its detection can be minimized. We evaluate our approach using real data collected from a sensor network deployment on the Great Barrier Reef. [ABSTRACT FROM AUTHOR]

Abstract: Coastal and reef policy decisions and management programs require research to address current and emerging issues, to detect trends in key environmental variables and to help evaluate the effectiveness of management strategies. The technology and infrastructure components are now well developed and understood, but the useful application of sensor network data and efficient delivery of real-time information still needs improvement to better incorporate management needs and priorities. This paper aims to contribute to the current understanding of the adoption of wireless technology in research and practice, by identifying the main drivers and barriers to the adaptive deployment of an environmental sensor network along the Great Barrier Reef coast. Specifically, it addresses the extent to which the deployment of sensor networks and the delivery of real-time data can best suit managers’ and decision makers’ needs by providing timely and useful spatial data. Study findings indicate that, although researchers and managers ask significantly different questions requiring real-time spatial data, there is great potential and interest from both science and management for continuous automatic monitoring of environmental parameters. Some of the key research and management needs that the sensor network technology should address include measuring water (marine) quality at biological monitoring sites, water circulation patterns and flood plume water quality, gathering long-term data on turbidity, photosynthetically active radiation and chlorophyll a, and developing uniform standards for the provision of data to networks. [Copyright &y& Elsevier]

A spatially-structured simulation model of the metapopulation dynamics of common coral trout (Plectropomus leopardus) and their harvest by line fishing was developed to evaluate potential management options on the Great Barrier Reef (GBR), including closing areas to fishing. The effects of line fishing simulator (ELFSim) incorporates a spatially-structured model of the life-history of common coral trout, including larval dispersal, harvest by multiple fishing sectors (commercial, charter and recreational), and a range of mechanisms for regulating harvest. The model is designed to allow considerable flexibility in biological and fishery dynamics, to be portable to contexts other than the GBR, and to be modular to allow comparison of different implementations of biological and harvest model components. In this paper, we describe the details of the model and discuss its utility as a tool for evaluating fishery management strategies in the context of diverse stakeholder expectations. We illustrate a simple application by changing the rate at which larvae settle on the reef from which they were spawned, under a range of spatial closures and a scenario of steadily increasing fishing effort. The results identify the conditions under which a “larval subsidy effect” may be important to the performance of fishery management strategies. This effect was manifest as increased catches outside of areas closed to fishing when larvae were freely exchanged among reefs compared to when larval exchange was diminished or absent. [Copyright &y& Elsevier]

Australian and Queensland Government's Reef 2050 Water Quality Improvement Plan has set targets for improving the water quality entering the Great Barrier Reef lagoon. Given the large public investment and the deficit of data linking on-farm land management to changes in environmental outcomes, there is a need for a robust and efficient methods of quantifying links between land management and water quality. This paper explores a pragmatic approach to making this link using available data. We demonstrate that a simple parameterisation process is suitable for estimating hydrology and water quality across a wide range of land uses and management practices in agricultural landscapes. However, a manually calibrated model may still require the analysis of parameters to reduce error variances and evaluate uncertainties. Confidence in estimating hydrology and water quality in descending order is: runoff, sediment, nitrogen, phosphorous, and pesticide losses, reflecting the availability of data and inherent error propagation. • A pragmatic modelling by Howleaky is suitable to link management to water quality. • A manually calibrated model may still require a reduction in error variances. • Data availability and inherent error propagation determined confidence in modelling. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef is a UNESCO World Heritage Area that has been assessed as having a very poor outlook and needing urgent intervention. The eReefs hydrodynamic-biogeochemical models are used to complement monitoring, facilitate data interpretation and support policy decisions. Management and policy for the Great Barrier Reef are politically contentious, so a high standard of model evaluation is required. We report the application of a recently-developed four-level "CSPS" (Concept/State/Process/System) model evaluation framework to the eReefs biogeochemical model. The framework considers: Level 0, conceptual evaluation; Level 1, simulated state variables; Level 2, process rates; and Level 3, system-level patterns and emergent properties. This paper is the first complete application of this model assessment framework. It highlights both strengths and weaknesses of the eReefs biogeochemical model that might not have been apparent from a traditional model evaluation. The framework can be applied to evaluation of any complex, process-based numerical model. • In politically-contentious contexts, models require a high standard of assessment. • We demonstrate the four-level (Concept/State/Process/System) assessment framework. • The performance of the eReefs marine models is assessed. • The approach highlights strengths and weaknesses of the models. • Emergent properties are particularly useful to enhance model assessment. [ABSTRACT FROM AUTHOR]

Aerosols deposited into the Great Barrier Reef (GBR) contain iron (Fe) and other trace metals, which may act as micronutrients or as toxins to this sensitive marine ecosystem. In this paper, we quantified the atmospheric deposition of Fe and investigated aerosol sources in Mission Beach (Queensland) next to the GBR. Leaching experiments were applied to distinguish pools of Fe with regard to its solubility. The labile Fe concentration in aerosols was 2.3–10.6 ng m−3, which is equivalent to 4.9%–11.4% of total Fe and was linked to combustion and biomass burning processes, while total Fe was dominated by crustal sources. A one-day precipitation event provided more soluble iron than the average dry deposition flux, 0.165 and 0.143 μmol m−2 day−1, respectively. Scanning Electron Microscopy indicated that alumina-silicates were the main carriers of total Fe and samples affected by combustion emissions were accompanied by regular round-shaped carbonaceous particulates. Collected aerosols contained significant amounts of Cd, Co, Cu, Mo, Mn, Pb, V, and Zn, which were mostly (47.5%–96.7%) in the labile form. In this study, we provide the first field data on the atmospheric delivery of Fe and other trace metals to the GBR and propose that this is an important delivery mechanism to this region. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef (GBR) coral coverage is in rapid decline from severe and sustained pressures from lagoon water quality, crown-of-thorns starfish (COTS), coral bleaching, tropical cyclones, pollution and diseases. The two recent GBR coral bleaching events (2016–2017) lead to Great Barrier Reef Marine Park Authority (GBRMPA) shifting their focus from passive management to active intervention (Great Barrier Reef Blueprint for resilience by GBRMPA). These active interventions, potentially able to increase GBR resilience, as there are reefs that, due to their physical location relative to all other reefs, river and estuary entrances, ocean currents, have favourable coral growth conditions. To undertake such interventions, various information is required including tropical cyclone wave climates. This paper develops tropical cyclone wave climates for the entire GBR. These wave climates were developed by simulating several thousand synthetic cyclones derived from the "HadGEM" general circulation model with RCP8.5 climate change scenario. The synthetic cyclones adopted herein include the following climate changes assessed by comparing averages of key forcing parameters between 1950 to 1999 and 2050 to 2099. Their average arrival rate increases from 2.25 to 2.41 cyclones/year and their average maximum wind speed increases from 24 to 28 m/s. Their average radius to maximum winds remains constant at 51 km. Two key challenges were resolved, namely, long runtimes and large files (600 m grid increment covering 1800 km by 280 km). Runtimes were reduced by excluding cyclones where their wind speeds over the entire event never exceeded 10 m/s within GBR itself or within 100 km of the GBR over water. Maximum wave heights were compared with an extended fetch empirical expression, which was based on satellite data of tropical cyclones in open waters, when cyclones were outside the GBR lagoon. These comparisons indicate that predicted wave heights have a lower bias using default wave generation parameters when compared with the extended fetch empirical expression. Prediction uncertainty was estimated at no more than 10% from various cyclonic wind-field models. The existing GBR reefs reduce nearshore wave or runup height by between 1.5 and 2 times compared to the no reef case. The reduction in wave or runup height was found to be minimal for 1 m sea level rise. These two findings indicate that there is more flooding potential from coral removal than SLR within the GBR lagoon. • Tropical Cyclone wave climate has been estimated for Great Barrier Reef. • Uncertainty testing indicates prediction accuracies are approximately 20%. • Great Barrier Reef reduces nearshore cyclonic waves by factor 1.5 to 2. [ABSTRACT FROM AUTHOR]

Estimating the impact of environmental processes on vertical reef development in geological time is a very challenging task. pyReef-Core is a deterministic carbonate stratigraphic forward model designed to simulate the key biological and environmental processes that determine vertical reef accretion and assemblage changes in fossil reef drill cores. We present a Bayesian framework called Bayesreef for the estimation and uncertainty quantification of parameters in pyReef-Core that represent environmental conditions affecting the growth of coral assemblages in geological timescales. Weencounter multimodal posterior distributions and investigate the challenges of sampling using Markov chain Monte-Carlo (MCMC) methods, which includes parallel tempering MCMC. We use a synthetic reef-core to investigate fundamental issues and then apply the methodology to a selected reef-core from the Great Barrier Reef in Australia. The results show that Bayesreef accurately estimates and provides uncertainty quantification of the selected parameters that represent environment and ecological conditions in pyReef-Core. Bayesreef provides insights into the complex posterior distributions of the parameters in pyReef-Core , which provides the groundwork for future research in this area. • Estimating the impact of environmental processes on vertical reef development in geological time is a very challenging task. • pyReef-Core is a deterministic carbonate stratigraphic forward model designed to simulate the key biological and environmental processes. • This paper presents Bayesreef for the estimation and uncertainty quantification of parameters in pyReef-Core. • The results show that Bayesreef accurately estimates and provides uncertainty quantification for parameters in pyReef-Core. • Bayesreef provides insights in of pyReef-Core and establishes the groundwork for future research. [ABSTRACT FROM AUTHOR]

The article discusses the insufficient environmental protection efforts of some countries in their designated and declared marine protected areas (MPAs). It says that studies reveal some MPAs like the Great Barrier Reef Marine Park in Australia have adequate protection to marine ecosystems but some MPAs only exist in paper and offer no real protection and have design flaws that protects the wrong habitats. Furthermore, these problems will grow as countries join forces to establish larger MPAs.

The article discusses several papers published within the issue including one by Sharma and colleagues regarding the three-dimensional (3D) attachment of gold nanoparticles to DNA networks, one by Deshpande and colleagues regarding the insulating behavior of nanotubes, and one by De'ath and colleagues regarding the rate of calcification of coral from the Great Barrier Reef of Australia.