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The skin microbiota plays an essential role in helping the host adapt to different environments and maintain health. By examining the characteristics of amphibian skin flora alongside ontogenetic traits, we can gain insights into the adaptation mechanisms of amphibian skin flora to environmental changes during development. In this study, we analyzed the skin microbiota of Quasipaa spinosa during metamorphosis using Illumina sequencing. Venn diagrams and UpSet analysis revealed that the LTS (hindlimb tadpoles' skin, aquatic habitat) and FTS (forelimb tadpoles' skin, shift from aquatic to amphibious habitats) groups exhibited a higher number of unique amplicon sequence variants (ASVs), while the TS (tadpoles' skin, aquatic habitat) and LFS (land frogs' skin, amphibious habitats) groups displayed a lower abundance of ASVs. Diversity analysis indicated similarities in the microorganisms between the LTS and the FTS groups, with higher microbial diversity compared to the TS and the LFS groups. Additionally, microbial co-occurrence network analysis indicated a more stable microecology in the LTS group and FTS group. Proteobacteria, Firmicutes, and Bacteroidota were identified as the dominant phyla, although their relative abundances varied widely among groups. LEfSe (Linear discriminant analysis effect size) showed significant enrichment of beneficial bacteria at various developmental stages, including Bacteroides , Bacillus , and Lactobacillus. Functional prediction analysis shows significant differences in skin microorganism functions across various developmental stages, with a primary focus on metabolic functions. This study provides valuable insights into the compositional dynamics of skin microbiota in Q. spinosa at various developmental stages. [ABSTRACT FROM AUTHOR]

Introduction: Plants are inherently connected with the microbiome, which plays a crucial role in regulating various host plant biological processes, including immunity, nutrient acquisition, and resistance against abiotic and biotic stresses. Many factors affect the interaction between plants and microbiome. Methods and results: In this study, microbiome samples were collected from five niches (bulk soil, rhizoplane, root endosphere, phylloplane, and leaf endosphere) across four developmental stages (seedling, flowering, podding, and maturity) of various soybean varieties. Composition and structure of bacterial and fungal communities were analyzed using 16S rRNA gene and ITS (Internally Transcribed Spacer) region amplicon sequencing. It was observed that both niches and developmental stages significantly impact on the assembly and composition of soybean microbiome. However, variety, presence of a transgene, and glyphosate application had minimal effects on microbial communities. The dominant microbiome varied across the five niches, with most containing beneficial microbial communities capable of promoting plant growth or increasing disease resistance. Types and abundance of the dominant microbes affected network stability, potentially resulting in functional changes in different ecological niches. Conclusion: This study provides theoretical evidence for microbial protection of plants against diseases and demonstrates that systematic analysis of the composition and diversity of soybean microbiomes can contribute to the development of biological control technologies. [ABSTRACT FROM AUTHOR]

Heat shock proteins (HSPs), also known as heat stress proteins, can be divided into five main families, including HSP100, HSP90, HSP70, HSP60, and small heat shock proteins (sHSPs), according to their molecular weight. Further studies have shown that HSPs represent a class of highly conserved proteins that widely exist in the subcellular compartments of prokaryotic and eukaryotic cells. They have many functions, such as protein folding, repair, and immunity, and play important roles in organism growth and development. For example, Dmhsp70-A and Dmhsp70-B showed similar trends in the development of asexual embryos in Daphnia magna. However, they exhibited different trends in the development of sexual embryos despite high expression in both embryo types. Penaeus japonicus is one of the most important commercial shrimp species in China, Japan, and Southeast Asian countries. Relevant studies have shown that hsp genes widely exist in P. japonicus and play important roles in growth and development. For example, hsp10 and hsp60 were expressed in all tissues of P. japonicus, and the differential expression of hsp60 was identified in the early development stages. However, previous studies were based on single genes, and more systematic studies based on the role of the hsp gene family in the growth and development of P. japonicus have not been published. Our laboratory has completed the genome sequence of P. japonicus, which provides basic data for analyzing the molecular mechanism of hsp in the growth and development of P. japonicus. To further study the characteristics of the hsp gene family in P. japonicus and the expression characteristics of hsp genes during different development stages, the hsp gene family of P. japonicus was identified and analyzed using bioinformatics methods, and variation in its expression during the development of P. japonicus was measured using reverse transcription and quantitative real-time (RT-qPCR). Fifteen members of the hsp gene family were identified from the whole genome of P. japonicus via bioinformatics analysis, and their gene structures, motif compositions, chromosome localizations, and phylogenetic characteristics were analyzed. The expression of hsp genes in maternal-to-zygotic cells, blastocysts, gastrulae, limb buds, intramembranous nauplii, stage 1 nauplii, stage 1 zoeae, stage 1 myses, and stage 1 post-larval juveniles of P. japonicus was measured using qPCR. A total of 15 hsp genes were identified, including 1 hsp10, 2 hsp20, 2 hsp40, 1 hsp60, 6 hsp70, and 3 hsp90 genes. The physicochemical properties of seven proteins were stable, with instability coefficients less than 40. Subcellular localization results showed that most of the hsp gene family members were located in the cytoplasm, as seven hsp genes were localized to the cytoplasm, two to the nucleus, two to the extracellular region, two to the endoplasmic reticulum, and two to the mitochondria. Isoelectric point (pI) is related to the number and proportion of acidic and basic amino acids contained in a protein. Most HSPs exhibited a pI < 7, suggesting they were acidic proteins. The 15 hsp genes were located on 11 chromosomes. Phylogenetic tree analysis showed that most of the HSP family members were first clustered with HSP family members from species such as Penaeus monodon, Litopenaeus vannamei, and Fenneropenaeus chinensis and then with HSP family members of other species, which was consistent with the traditional taxonomic status. A few HSP family members were clustered first with HSP family members from Eriocheir sinensis, D. melanogaster, and other insects, and then with HSP family members from other species. Motif analysis showed that the hsp gene family was highly conserved; however, the functions of different families were quite different. Structural domain analysis showed that the HSP family included cpn10-, metazoan ACD-, DnaJ bact superfamily-, GroEL-, PTZ00009 superfamily-, dnaK-, HSP70 superfamily-, HSP90 superfamily-, PRK14083 superfamily-, and HATpase_HSP90-like domains. Each gene family contained corresponding domains and was important in molecular chaperone processes. hsp genes were expressed in different developmental stages of P. japonicus and played important roles in growth and development. The trend of Pjhsp10-19.517 was similar to that of Pjhsp60-19.518, which was highly expressed during embryonic development and significantly downregulated during larval development. This is consistent with the conclusion of previous studies that HSP60 and HSP10 are molecular chaperones for each other to ensure the correct folding of the target protein. The hsp genes such as Pjhsp40-15.349, Pjhsp70-39.287, Pjhsp70-1.298, and Pjhsp90 were highly expressed in the embryonic period; Pjhsp20, Pjhsp70-3.662, Pjhsp70-15.369, Pjhsp70-32.916, and Pjhsp90-12.759 were highly expressed during the larval period. The hsp genes expressed at high levels during the embryonic period satisfy the high protein requirements of embryos by playing the role of molecular chaperone and regulating the transcription of vitellogenin to meet the embryonic need for vitellin. The hsp genes expressed at high levels during the larval period protect the body from environmental pressure, pathogens, and xenobiotics through a synergistic immune effect. The authors believe that hsp genes play important roles in the growth and development of P. japonicus, and the specific pathways and mechanisms should be further studied. This study provides basic data for further investigations of the role of hsp genes in the growth and development of P. japonicus.

Antarctic krill (Euphausia superba) is a harvested species that has an important role in the Southern Ocean food web. Knowledge on the demography of Antarctic krill is necessary for a better understanding of the distribution of life stages and their relation with predator species. In addition, such information is essential for krill fisheries management by CCAMLR (Commission on the Conservation of Antarctic Marine Living Resources). A large part of the Indian sector of the Southern Ocean is understudied and large-scale krill surveys of this region are scarce. Therefore, a survey was carried out during the austral summer of 2018/2019 on board RV Kaiyo-maru in the region from 80 to 150°E. Krill was collected using a Rectangular Midwater Trawl (RMT). Previous studies suggest that part of the Antarctic krill population resides in the upper surface of the water column, but traditional trawls and echosounders have not been able to fully investigate this stratum due to sampling constraints. To overcome this knowledge gap, the upper surface (0-2 m) was sampled using a Surface and Under Ice Trawl (SUIT) in addition to the standard survey net. Results show that there were differences in the horizontal and vertical distribution of post-larval krill between the area west and east of approximately 120°E. These differences coincided with variation in environmental properties. Early calyptopis larvae were found throughout the survey area. Their relatively low numbers suggested ongoing spawning that started early in the season. Juveniles were found mainly in the western side of the sampling area and large densities of this developmental stage were found to reside in the upper two meters of the water column. The quantitative estimation of krill in the upper surface indicated that undersampling this part of the population may influence estimates of, for example, recruitment. [ABSTRACT FROM AUTHOR]

The ability of plants to alter specific combinations of leaf traits during development and in response to abiotic stress is crucial for their success and survival. While there are numerous studies on the variation of leaf traits within the canopies of Populus species, the application of network analysis to understand the variation and combinations of these traits across different growth stages is rare. The leaves of Populus euphratica, a dominant species in arid regions, exhibit notable morphological variations at different developmental stages and canopy heights in response to water scarcity and climate change. In this study, 34 leaf traits (morphological, chemical, photosynthetic, and hydraulic) and their roles in drought adaptation were investigated in 60 Populus euphratica plants at five developmental stages and five canopy heights using leaf trait network (LTN) analysis. The aim was to analyze adaptive strategies to arid environments at different developmental stages and canopy heights through the interdependence of leaf traits. The results showed that the internal coordination capacity of leaf trait networks decreased and then increased with each developmental stage, while the functional modules of leaf trait networks were loosely connected and aggregated with the increase in tree diameter at breast height. With increasing canopy height, the coordination linkage's ability between leaf traits showed an increasing then decreasing trend, and the traits of the leaves in the canopy at 6 m were more closely connected, less modular, and simpler in topology compared with those in the other layers. Leaves form functional modules by coordinating specific traits that promote growth and resist drought. Leaf photosynthesis, water transport, and nutrient traits were central to different developmental stages, whereas leaf morphology, nutrient metabolism, and drought-resistance-related traits were central to the canopy height. Leaf morphology and osmoregulatory traits play key roles in leaf trait network regulation, including leaf length and width, leaf shape index, soluble sugars, and soluble proteins, which are important "intermediary traits" in the Populus euphratica leaf network. Further analysis revealed that structural traits were important at different developmental stages and canopy heights. When resources are limited, the leaf preferentially maintains a stable connection between structural traits to enhance photosynthesis, and these traits and their combinations might confer drought resistance. During the rapid development stage, the connection between chemical traits becomes important, and the leaf grows by rapidly accumulating nutrients. In summary, this study provides new perspectives and insights into the drought adaptation strategies of P. euphratica at different developmental stages and canopy heights by analyzing leaf trait networks. [ABSTRACT FROM AUTHOR]

The flavor of guava, an important tropical fruit, is influenced by secondary metabolites. However, the mechanisms and processes underlying flavor formation in guava remain unclear. In this study, dynamic changes in volatile organic compounds (VOCs), sugars, and organic acids in guava peel and flesh across different developmental stages were investigated using headspace solid-phase microextraction (HS-SPME) combined with gas chromatography-mass spectrometry (GC–MS) and high-performance liquid chromatography (HPLC). Here, we identified 90 VOCs, three sugars and eight organic acids. The dynamics of VOCs differ between the flesh and peel. The early developmental stages are more critical in influencing the variation of VOCs in the flesh, while VOC changes in peel occur more progressively across the developmental stages. By integrating transcriptomic and metabolomic analyses, we identified several key genes involved in VOC, sugar, and acid metabolism. This is the first study to describe the expression patterns of these genes throughout guava development, providing new insights into guava flavor development.

ABSTRACT: Intramuscular fat (IMF) content is an important indicator of livestock and poultry meat quality. Enhancing IMF deposition can significantly improve meat quality. Focusing on the core process of IMF deposition, this study used the Jingxing Yellow (JXY) chickens as a model organism and employed multi-omics approaches, including RNA-sequencing (RNA-seq), Whole-genome bisulfite sequencing (WGBS), and metabolomics, to identify the key genes influencing IMF deposition in chickens during development. The results indicated that the contents of triglycerides (TG) and phospholipids (PLIP) exhibited an upward trend. The TG content did not differ significantly between day 1 (D1) and day 7 (D7), but increased significantly after 35 days (D35) of age. The WGBS results revealed that CpG methylation was the predominant methylation type in the breast muscle tissue of JXY chickens. Integrative analysis of RNA-seq and WGBS identified 50 genes, including PLA2G4F, PALMD, PLSCR5, ARHGEF26, LUM, DCN, TNRC6B, CACNA1C, ROBO1, and MBTPS2, whose methylation levels were significantly negatively correlated with their expression levels. In addition, the combined Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis of differentially-expressed metabolites (DEM) and differentially-expressed genes (DEG) converged on the glycerophospholipid metabolism pathway, which was significantly enriched in DEGs such as PLA2G4F, PLA2G15, LPIN1, MBOAT2, DGKH, AGPAT2, and CHKA, as well as DEM like glycerophosphocholine and phosphocholine. Notably, PLA2G4F was identified as a DEG by DNA methylation, suggesting that PLA2G4F could be a key candidate gene influencing IMF deposition during chicken development. These findings are expected to provide a solid theoretical foundation for improving meat quality through targeted genetic and epigenetic interventions.

The skin microbiota plays an essential role in helping the host adapt to different environments and maintain health. By examining the characteristics of amphibian skin flora alongside ontogenetic traits, we can gain insights into the adaptation mechanisms of amphibian skin flora to environmental changes during development. In this study, we analyzed the skin microbiota of Quasipaa spinosa during metamorphosis using Illumina sequencing. Venn diagrams and UpSet analysis revealed that the LTS (hindlimb tadpoles’ skin, aquatic habitat) and FTS (forelimb tadpoles’ skin, shift from aquatic to amphibious habitats) groups exhibited a higher number of unique amplicon sequence variants (ASVs), while the TS (tadpoles’ skin, aquatic habitat) and LFS (land frogs’ skin, amphibious habitats) groups displayed a lower abundance of ASVs. Diversity analysis indicated similarities in the microorganisms between the LTS and the FTS groups, with higher microbial diversity compared to the TS and the LFS groups. Additionally, microbial co-occurrence network analysis indicated a more stable microecology in the LTS group and FTS group. Proteobacteria, Firmicutes, and Bacteroidota were identified as the dominant phyla, although their relative abundances varied widely among groups. LEfSe (Linear discriminant analysis effect size) showed significant enrichment of beneficial bacteria at various developmental stages, including Bacteroides, Bacillus, and Lactobacillus. Functional prediction analysis shows significant differences in skin microorganism functions across various developmental stages, with a primary focus on metabolic functions. This study provides valuable insights into the compositional dynamics of skin microbiota in Q. spinosa at various developmental stages.

Henosepilachna vigintioctomaculata is distributed in several Asian countries. The larvae and adults often cause substantial economic losses to Solanaceae crops such as potato, tomato, eggplant, and Chinese boxthorn. Even though a chromosome-level genome has been documented, the expression profiles of genes involved in development are not determined. In this study, we constructed embryonic, larval, pupal, and adult transcriptomes, generated a comprehensive RNA-sequencing dataset including ~52 Gb of clean data, and identified 602,773,686 cleaned reads and 33,269 unigenes. A total of 18,192 unigenes were successfully annotated against NCBI nonredundant protein sequences, Swissprot, Eukaryotic Orthologous Groups, Gene Ontology (GO), or Kyoto Encyclopedia of Genes and Genomes (KEGG) databases. There were 3580, 2040, 5160, 2496, 3008, and 3895 differentially expressed genes (DEGs) between adult/egg, egg/larval, larval/pupal, adult/pupal, egg/pupal, and adult/larval samples, respectively. GO and KEGG analyses of the DEGs highlighted several critical pathways associated with specific developing stages. This is the first comprehensive transcriptomic dataset encompassing all developmental stages in H. vigintioctomaculata. Our data may facilitate the exploitation of gene targets for pest control and can serve as a valuable gene resource for future molecular investigations. [ABSTRACT FROM AUTHOR]

Simple Summary: Simple Summary: The loreyi leafworm, Mythimna loreyi (Duponchel), has recently expanded its distribution range to many countries around the world. To understand the molecular response mechanism of this pest to cold stress, a comprehensive transcriptome analysis was carried out in three developmental stages (larvae, pupae, and adults) of M. loreyi. The results indicated that there were significant differences in metabolism-related processes and gene expression when they were exposed to low temperatures. In addition, several differentially expressed genes were identified in these stages after exposure to cold stress. This is the first study to test cold stress-induced transcriptional changes in three developmental stages of M. loreyi and provide basic data for understanding the molecular response mechanisms of moths under cold stress. The loreyi leafworm Mythimna loreyi (Lepidoptera: Noctuidae) is a serious pest of agriculture that causes particular damage to Gramineae crops in Asia, Europe, Australia, Africa, and the Middle East. Low temperature is one of the important environmental factors that limits the survival, distribution, colonization, and abundance of M. loreyi. However, the metabolic synthesis pathways of cold-tolerant substances in M. loreyi and the key genes involved in the regulation under cold stress remain largely unknown. In this study, we sequenced the transcriptomes of three developmental stages (larvae, pupae, and adults) of M. loreyi to discover the molecular mechanisms of their responses to cold stress. In total, sequencing generated 120.64 GB of clean data from 18 samples, of which 19,459 genes and 1740 differentially expressed genes (DEGs) were identified. The enrichment analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) revealed that many DEGs were mainly enriched in pathways associated with energy metabolism and hormone metabolism. Among these, genes encoding multiple metabolic enzymes, cuticle proteins (CPs), and heat shock proteins (HSPs) were differentially expressed. These results indicate that there are significant differences among the three developmental stages of M. loreyi exposed to cold stress and provide a basis for further studying the molecular mechanisms of cold tolerance in insects. [ABSTRACT FROM AUTHOR]

Heat shock proteins (HSPs) are a class of highly conserved proteins that play an important role in biological responses to various environmental stresses. The mariculture of Thamnaconus septentrionalis, a burgeoning aquaculture species in China, frequently encounters stressors such as extreme temperatures, salinity variations, and elevated ammonia levels. However, systematic identification and analysis of the HSP70 and HSP90 gene families in T. septentrionalis remain unexplored. This study conducted the first genome-wide identification of 12 HSP70 and 4 HSP90 genes in T. septentrionalis, followed by a comprehensive analysis including phylogenetics, gene structure, conserved domains, chromosomal localization, and expression profiling. Expression analysis from RNA-seq data across various tissues and developmental stages revealed predominant expression in muscle, spleen, and liver, with the highest expression found during the tailbud stage, followed by the gastrula, neurula, and juvenile stages. Under abiotic stress, most HSP70 and HSP90 genes were upregulated in response to high temperature, high salinity, and low salinity, notably hspa5 during thermal stress, hspa14 in high salinity, and hsp90ab1 under low salinity conditions. Ammonia stress led to a predominance of downregulated HSP genes in the liver, particularly hspa2, while upregulation was observed in the gills, especially for hsp90b1. Quantitative real-time PCR analysis corroborated the expression levels under environmental stresses, validating their involvement in stress responses. This investigation provides insights into the molecular mechanisms of HSP70 and HSP90 in T. septentrionalis under stress, offering valuable information for future functional studies of HSPs in teleost evolution, optimizing aquaculture techniques, and developing stress-resistant strains. [ABSTRACT FROM AUTHOR]

Aim: Dates are the second most important crops in Iran after pistachios, which show different structural and textural adaptations to drought and high temperatures. Acquiring the necessary knowledge about various structural and physiological changes from flowering to fruit ripening plays a significant role in obtaining high-quality and marketable fruit. Date fruit is a berry characterized by exocarp, fleshy mesocarp and membrane endocarp around the seed. This berry is formed from a fertilized carpel present in the female flower, while the other two carpels do not grow and decay. The fruit development period is long and lasts about 7 months. The sweetness and texture of date fruit is closely related to the maturity stage of the fruit. During the growth period of date fruit, several changes in the color and chemical composition of the fruit are observed. Mozafati is one of the most important commercial varieties of dates in Iran especially in Bam city. In the present study, the morphology and histology of the date fruit (Phoenix dactylifera L.) of the Mozafati cultivar were investigated during the developmental stages. Material and Methods: Samples were collected from a commercial garden located in Bam city. Five adult 17-year-old date palms of Mozafati cultivar derived from offshoots grown in similar environmental conditions were used as female parents. The pollen used in this experiment is the same pollen that is normally used by local gardeners for pollination. Sample collection was done in five different developmental stages including Hababouk, Kimri, Khalal, Sarkhal and Rutab (4, 12, 19, 24 and 25 weeks after pollination, respectively). In this research, the local Iranian names such as Sarkhal and Rutb were used for the last two stages. The collected fruits, after cleaning and sorting, were packed and stored at 4ºC. The hand sections prepared from the fresh samples at each developmental stage were studied with an optical microscope after staining and then photographed. Results: An anatomical study of fruits in different stages of development revealed several general characteristics in their pericarp structure: 1) Pericarp differentiation starts in the early stages of development (immediately after pollination) and its development continues progressively and regularly. 2) The exocarp contains four differentiated layers in all developmental stages, from outside to inside, includes layers of the epidermis, hypodermis, skin parenchyma, and layer of stone cells. 3) The mesocarp (which is the largest region forming the pericarp) has a large number of layers consisting of parenchymal cells and is divided into two outer and inner regions, which are separated by a layer of parenchymal cells specialized to store tannins (idioblast). Vascular vessels with different sizes are distributed in the outer and inner mesocarp, which are less abundant in the inner parts. 4) The endocarp can be recognized as an unspecialized single-layered epidermis only in the early stages of development and eventually forms the seed coat together with the inner layers of the mesocarp. Conclusion: Organized protection and defense mechanisms, including the presence of thick cuticle, stone layer, and specialized tannin layer (tannin idioblasts) in all stages of pericarp development, were among the interesting histological features of this cultivar, which showed its adaptive and evolutionary role in specific habitats. [ABSTRACT FROM AUTHOR]

Antarctic krill (Euphausia superba) is a harvested species that has an important role in the Southern Ocean food web. Knowledge on the demography of Antarctic krill is necessary for a better understanding of the distribution of life stages and their relation with predator species. In addition, such information is essential for krill fisheries management by CCAMLR (Commission on the Conservation of Antarctic Marine Living Resources). A large part of the Indian sector of the Southern Ocean is understudied and large-scale krill surveys of this region are scarce. Therefore, a survey was carried out during the austral summer of 2018/2019 on board RV Kaiyo-maru in the region from 80 to 150˚E. Krill was collected using a Rectangular Midwater Trawl (RMT). Previous studies suggest that part of the Antarctic krill population resides in the upper surface of the water column, but traditional trawls and echosounders have not been able to fully investigate this stratum due to sampling constraints. To overcome this knowledge gap, the upper surface (0-2 m) was sampled using a Surface and Under Ice Trawl (SUIT) in addition to the standard survey net. Results show that there were differences in the horizontal and vertical distribution of post-larval krill between the area west and east of approximately 120˚E. These differences coincided with variation in environmental properties. Early calyptopis larvae were found throughout the survey area. Their relatively low numbers suggested ongoing spawning that started early in the season. Juveniles were found mainly in the western side of the sampling area and large densities of this developmental stage were found to reside in the upper two meters of the water column. The quantitative estimation of krill in the upper surface indicated that undersampling this part of the population may influence estimates of, for example, recruitment.

Industrialized seeding production is one of the most important methods used to raise seedlings in a standardized and efficient manner. However, its consumption of light energy limits its development. In this paper, we studied the effects of LED light intensities (30 (L1), 60 (L2), 90 (L3), 120 (L4), 150 (L5), 180 (L6), and 210 (L7) µmol·m−2·s−1) on the phenotypic parameters and health index of seedlings during different growth stages (cotyledon flattening (CF), one bud and one leaf (OBOL), and one bud and two leaves (OBTL)). Ten out of sixteen plants were selected to measure the parameters in every treatment. The control group was treated with 150 µmol·m−2·s−1 all the time. The results show that the height of the L1-treated plants was greatest during the cotyledon flattening stage. The L7 treatment produced the largest stem diameter, the greatest biomass, the largest leaf area, and the largest leaf circumference, the values of which were 2.61 mm, 3.3 g, 60.67 cm2, and 39.71 cm, respectively. During the one bud and one leaf stage, the L1 treatment produced the tallest plants. The L7 treatment resulted in the largest stem diameter, the greatest biomass, the largest leaf area, and the largest leaf circumference. During the one bud and two leaves stage, the plant height, stem diameter, leaf circumference, and biomass produced of the L6 treatment were the greatest, with values of 68.37 mm, 3.09 mm, 51.54 cm, and 4.47 g. L5 resulted in the largest leaf area (63.91 cm2). The seedling index of the three stages showed an inflection point at the L4 level. The experimental results showed that the light intensity required by the cucumber seedlings was 120 µmol·m−2·s−1, 150 µmol·m−2·s−1, and 120 µmol·m−2·s−1 during the three stages, from the cotyledon flattening stage to the one bud and two leaves stage. The results provide references regarding the light required during the cultivation of cucumber seedlings. [ABSTRACT FROM AUTHOR]

Simple Summary: The Asian longhorned tick (ALHT), Haemaphysalis longicornis, is an invasive pest that threatens domestic livestock. Normally found in Asia and the Pacific islands, where it is a vector of human disease, this tick was reported for the first time in the United States in 2017. In this study, we collected H. longicornis ticks of different developmental stages and used bacterial 16S rDNA amplicon sequencing to examine their microbiome. We identified numerous bacterial taxa, with Coxiella, Sphingomonas, Staphylococcus, Acinetobacter, Pseudomonas, Sphingomonadaceae, Actinomycetales, and Sphingobium as the most prevalent in the bacterial community. We documented a remarkable turnover in bacterial assemblage between life stages. These findings reveal important associations between life stages and their bacterial community and provide important insights to guide future research. Ticks are one of the most important vectors of human and animal disease worldwide. In addition to pathogens, ticks carry a diverse microbiota of symbiotic and commensal microorganisms. In this study, we used next-generation sequencing (NGS) to survey the microbiomes of Haemaphysalis longicornis (Acari: Ixodidae) at different life stages collected from field populations in North Carolina (NC), USA. Sequence analyses were performed using QIIME2 with the DADA2 plugin and taxonomic assignments using the Greengenes database. Following quality filtering and rarefaction, the bacterial DNA sequences were assigned to 4795 amplicon sequence variants (ASVs) in 105 ticks. A core microbiome of H. longicornis was conserved across all ticks analyzed, and included bacterial taxa: Coxiella, Sphingomonas, Staphylococcus, Acinetobacter, Pseudomonas, Sphingomonadaceae, Actinomycetales, and Sphingobium. Less abundant bacterial taxa, including Rickettsia and Aeromonas, were also identified in some ticks. We discovered some ASVs that are associated with human and animal infections among the identified bacteria. Alpha diversity metrics revealed significant differences in bacterial diversity between life stages. Beta diversity metrics also revealed that bacterial communities across the three life stages were significantly different, suggesting dramatic changes in the microbiome as ticks mature. Based on these results, additional investigation is necessary to determine the significance of the Haemaphysalis longicornis microbiome for animal and human health. [ABSTRACT FROM AUTHOR]

Specialized metabolites are produced via discrete metabolic pathways. These small molecules play significant roles in plant growth and development, as well as defense against environmental stresses. These include damping off or seedling blight at a post-emergence stage. Targeted metabolomics was followed to gain insights into metabolome changes characteristic of different developmental stages of sorghum seedlings. Metabolites were extracted from leaves at seven time points post-germination and analyzed using ultra-high performance liquid chromatography coupled to mass spectrometry. Multivariate statistical analysis combined with chemometric tools, such as principal component analysis, hierarchical clustering analysis, and orthogonal partial least squares–discriminant analysis, were applied for data exploration and to reduce data dimensionality as well as for the selection of potential discriminant biomarkers. Changes in metabolome patterns of the seedlings were analyzed in the early, middle, and late stages of growth (7, 14, and 29 days post-germination). The metabolite classes were amino acids, organic acids, lipids, cyanogenic glycosides, hormones, hydroxycinnamic acid derivatives, and flavonoids, with the latter representing the largest class of metabolites. In general, the metabolite content showed an increase with the progression of the plant growth stages. Most of the differential metabolites were derived from tryptophan and phenylalanine, which contribute to innate immune defenses as well as growth. Quantitative analysis identified a correlation of apigenin flavone derivatives with growth stage. Data-driven investigations of these metabolomes provided new insights into the developmental dynamics that occur in seedlings to limit post-germination mortality. [ABSTRACT FROM AUTHOR]

Abstract Background Studies on the gut microbiota of animals have largely focused on vertebrates. The transmission modes of commensal intestinal bacteria in mammals have been well studied. However, in gastropods, the relationship between gut microbiota and hosts is still poorly understood. To gain a better understanding of the composition of gut microbes and their transmission routes in gastropods, a large-scale and long-term experiment on the dynamics and transmission modes of gut microbiota was conducted on freshwater snails. Results We analyzed 244 microbial samples from the digestive tracts of freshwater gastropods and identified Proteobacteria and Bacteroidetes as dominant gut microbes. Aeromonas, Cloacibacterium, and Cetobacterium were identified as core microbes in the guts, accounting for over 50% of the total sequences. Furthermore, both core bacteria Aeromonas and Cloacibacterium, were shared among 7 gastropod species and played an important role in determining the gut microbial community types of both wild and cultured gastropods. Analysis of the gut microbiota at the population level, including wild gastropods and their offspring, indicated that a proportion of gut microbes could be consistently vertically transmitted inheritance, while the majority of the gut microbes resulted from horizontal transmission. Comparing cultured snails to their wild counterparts, we observed an increasing trend in the proportion of shared microbes and a decreasing trend in the number of unique microbes among wild gastropods and their offspring reared in a cultured environment. Core gut microbes, Aeromonas and Cloacibacterium, remained persistent and dispersed from wild snails to their offspring across multiple generations. Interestingly, under cultured environments, the gut microbiota in wild gastropods could only be maintained for up to 2 generations before converging with that of cultured snails. The difference observed in gut bacterial metabolism functions was associated with this transition. Our study also demonstrated that the gut microbial compositions in gastropods are influenced by developmental stages and revealed the presence of Aeromonas and Cloacibacterium throughout the life cycle in gastropods. Based on the dynamics of core gut microbes, it may be possible to predict the health status of gastropods during their adaptation to new environments. Additionally, gut microbial metabolic functions were found to be associated with the adaptive evolution of gastropods from wild to cultured environments. Conclusions Our findings provide novel insights into the dynamic processes of gut microbiota colonization in gastropod mollusks and unveil the modes of microbial transmission within their guts. Video Abstract

Background: Studies on the gut microbiota of animals have largely focused on vertebrates. The transmission modes of commensal intestinal bacteria in mammals have been well studied. However, in gastropods, the relationship between gut microbiota and hosts is still poorly understood. To gain a better understanding of the composition of gut microbes and their transmission routes in gastropods, a large-scale and long-term experiment on the dynamics and transmission modes of gut microbiota was conducted on freshwater snails. Results: We analyzed 244 microbial samples from the digestive tracts of freshwater gastropods and identified Proteobacteria and Bacteroidetes as dominant gut microbes. Aeromonas, Cloacibacterium, and Cetobacterium were identified as core microbes in the guts, accounting for over 50% of the total sequences. Furthermore, both core bacteria Aeromonas and Cloacibacterium, were shared among 7 gastropod species and played an important role in determining the gut microbial community types of both wild and cultured gastropods. Analysis of the gut microbiota at the population level, including wild gastropods and their offspring, indicated that a proportion of gut microbes could be consistently vertically transmitted inheritance, while the majority of the gut microbes resulted from horizontal transmission. Comparing cultured snails to their wild counterparts, we observed an increasing trend in the proportion of shared microbes and a decreasing trend in the number of unique microbes among wild gastropods and their offspring reared in a cultured environment. Core gut microbes, Aeromonas and Cloacibacterium, remained persistent and dispersed from wild snails to their offspring across multiple generations. Interestingly, under cultured environments, the gut microbiota in wild gastropods could only be maintained for up to 2 generations before converging with that of cultured snails. The difference observed in gut bacterial metabolism functions was associated with this transition. Our study also demonstrated that the gut microbial compositions in gastropods are influenced by developmental stages and revealed the presence of Aeromonas and Cloacibacterium throughout the life cycle in gastropods. Based on the dynamics of core gut microbes, it may be possible to predict the health status of gastropods during their adaptation to new environments. Additionally, gut microbial metabolic functions were found to be associated with the adaptive evolution of gastropods from wild to cultured environments. Conclusions: Our findings provide novel insights into the dynamic processes of gut microbiota colonization in gastropod mollusks and unveil the modes of microbial transmission within their guts. 1dB18pPYxP-ygVgUJj2q9B Video Abstract [ABSTRACT FROM AUTHOR]

The loreyi leafworm Mythimna loreyi (Lepidoptera: Noctuidae) is a serious pest of agriculture that causes particular damage to Gramineae crops in Asia, Europe, Australia, Africa, and the Middle East. Low temperature is one of the important environmental factors that limits the survival, distribution, colonization, and abundance of M. loreyi. However, the metabolic synthesis pathways of cold-tolerant substances in M. loreyi and the key genes involved in the regulation under cold stress remain largely unknown. In this study, we sequenced the transcriptomes of three developmental stages (larvae, pupae, and adults) of M. loreyi to discover the molecular mechanisms of their responses to cold stress. In total, sequencing generated 120.64 GB of clean data from 18 samples, of which 19,459 genes and 1740 differentially expressed genes (DEGs) were identified. The enrichment analysis of Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) revealed that many DEGs were mainly enriched in pathways associated with energy metabolism and hormone metabolism. Among these, genes encoding multiple metabolic enzymes, cuticle proteins (CPs), and heat shock proteins (HSPs) were differentially expressed. These results indicate that there are significant differences among the three developmental stages of M. loreyi exposed to cold stress and provide a basis for further studying the molecular mechanisms of cold tolerance in insects.

Summary: Gene duplication produces the material that fuels evolutionary innovation. The “out-of-testis” hypothesis suggests that sperm competition creates selective pressure encouraging the emergence of new genes in male germline, but the somatic expression and function of the newly evolved genes are not well understood. We systematically mapped the expression of young duplicate genes throughout development in Caenorhabditis elegans using both whole-organism and single-cell transcriptomic data. Based on the expression dynamics across developmental stages, young duplicate genes fall into three clusters that are preferentially expressed in early embryos, mid-stage embryos, and late-stage larvae. Early embryonic genes are involved in protein degradation and develop essentiality comparable to the genomic average. In mid-to-late embryos and L4-stage larvae, young genes are enriched in intestine, epidermal cells, coelomocytes, and amphid chemosensory neurons. Their molecular functions and inducible expression indicate potential roles in innate immune response and chemosensory perceptions, which may contribute to adaptation outside of the sperm.

AbstractThis study aimed to clarify factors forcing changes in player development among U-10 German handball. An interview survey was conducted with Coach A, an expert in children’s handball in Germany. The main results are as follows: Coach A was aware of problems that a concept specific to children’s handball was not widespread in the country in the 1990s. Afterward, handball games suited to children’s ages and developmental stages were introduced at individual and regional levels. The starting point for these efforts was the presence of leading figures who could attract other coaches for player development. These efforts spread from individuals to regions, states, and the German handball federation. This could be because the league system requires the systematic development of technical and tactical skills so that an environment was created that other coaches could imitate. The coaches were assumed to spread the teams’ efforts by implementing long-term planned player development rather than short-term victory. Therefore, this study suggests that clarifying a specific game form for the elementary school age would improve player development. The journey from grassroots initiatives to a nationwide movement underscores the enduring influence of a game form that considers the cohesive, athlete-centered approach associated with their society.

Neonicotinoid pesticides (NNs) transfer rapidly from mother to offspring, which exhibit neurobehavioral effects. However, no studies have investigated NNs' transgenerational effects. We exposed F0 generation mice (mothers) to a no-observed-adverse-effect level (NOAEL) of clothianidin (CLO) during gestation and lactation, and examined the adult neurobehavioral effects of three generations of offspring (F1, F2, F3). F1 had lower birth weight, decreased locomotor activity, and increased anxiety-like behavior. In F2, body weight was affected, and there was a decreasing trend in locomotor activity and an increasing trend in anxiety-like behavior. In F3, locomotor activity tended to increase. Thus, even when only the mothers were exposed, the effects of CLOs were still observed in F1, F2, and F3 but the effects became smaller. [ABSTRACT FROM AUTHOR]

Objective: To investigate the impact of developmental stages on triterpene saponin content and expression of key genes in their biosynthetic pathway in Platycodon grandiflorus seedlings. Method: The total saponins were extracted using ultrasonic extraction with methanol as the solvent. The quantification of Platycodin D in 6-month-old and 1-year-old Platycodon grandiflorus seedlings was performed using ultra-performance liquid chromatography tandem mass spectrometry, while the expression of key genes in the biosynthesis of saponins was determined by real-time quantitative polymerase chain reaction. Result: The content of Platycodin D and total saponins in 1-year-old Platycodon grandiflorus roots was significantly higher than that in of 6-month-old. The expression of key genes in saponin biosynthesis, such as PGMVK, PGMVD, PGDXR, PGMCT, PGMDS, PGHDS, PGHDR, PGFPS, and PGSS, was higher in 1-year-old roots compared to 6-month-old seedlings. Conclusion: The medicinal value of 1-year-old Platycodon grandiflorus root was higher than that of 6-month-old seedlings. The difference in medicinal value can be attributed to the variation in the expression of key genes involved in the saponin biosynthesis pathway. [ABSTRACT FROM AUTHOR]

This study investigated the effects of developmental stage and store time on the chemical composition, microbial community, co-occurrence networks and fermentation characteristics of sweet sorghum silage. Sweet sorghum harvested at two developmental stages (heading stage, S1; hard dough stage, S2) was treated as follows: (I) natural fermentation of S1 (NS1); (II) natural fermentation of S2 (NS2) and ensiled for 1, 3, 7, 15, 30 and 60 days. After 60 days of ensiling, NS2 silage had higher lactic acid concentration and the ratio of lactic to acetic acid, and lower pH value and acetic acid concentration than NS1 silage. Meanwhile, NS2 silage also had higher ammonia nitrogen (NH3-N) content than NS1 silage, but the NH3-N content of both treatments was lower than 100 g/kg TN. Leuconostoc and Lactococcus were respectively dominant in both 7-day NS1 and NS2 silages, while Lactobacillus was the most abundant genus in 30-day NS1 and NS2 silages. The developmental stage altered the bacterial co-occurrence networks of fresh and ensiled sweet sorghum. Spearman’s correlation heatmap showed that the higher lactic acid content and ratio of lactic to acetic acid in NS2 silage could be associated with the higher water-soluble carbohydrate content in S2 material, the higher abundance of Lactococcus in the initial phase of ensiling and the higher abundance of Lactobacillus in the late phase of ensiling. These results concluded that the sweet sorghum harvested at the hard dough stage is preferred for silage production over the sweet sorghum harvested at the heading stage.HIGHLIGHTS Microbial succession pattern was studied on fresh and ensiled samples. Growth stage affected the chemical and microbial parameters of sweet sorghum. Epiphytic microbiota was correlated with the chemical composition of forage. Metagenomic sequencing showed Lactobacillus was dominated in all silages. Growth stage accelerated the fermentation of sweet sorghum silage.

This study aimed to clarify factors forcing changes in player development among U-10 German handball. An interview survey was conducted with Coach A, an expert in children's handball in Germany. The main results are as follows: Coach A was aware of problems that a concept specific to children's handball was not widespread in the country in the 1990s. Afterward, handball games suited to children's ages and developmental stages were introduced at individual and regional levels. The starting point for these efforts was the presence of leading figures who could attract other coaches for player development. These efforts spread from individuals to regions, states, and the German handball federation. This could be because the league system requires the systematic development of technical and tactical skills so that an environment was created that other coaches could imitate. The coaches were assumed to spread the teams' efforts by implementing long-term planned player development rather than short-term victory. Therefore, this study suggests that clarifying a specific game form for the elementary school age would improve player development. The journey from grassroots initiatives to a nationwide movement underscores the enduring influence of a game form that considers the cohesive, athlete-centered approach associated with their society. [ABSTRACT FROM AUTHOR]

Populus pruinosa Schrenk has the biological characteristics of heteromorphic leaves and is a pioneer species for wind prevention and sand fixation. The functions of heteromorphic leaves at different developmental stages and canopy heights of P. pruinosa are unclear. To clarify how developmental stages and canopy height affect the functional characteristics of leaves, this study evaluated the morphological anatomical structures and the physiological indicators of leaves at 2, 4, 6, 8, 10, and 12 m. The relationships of functional traits to the developmental stages and canopy heights of leaves were also analyzed. The results showed that blade length (BL), blade width (BW), leaf area (LA), leaf dry weight (LDW), leaf thickness (LT), palisade tissue thickness (PT), net photosynthetic rate (Pn), stomatal conductance (Gs), proline (Pro), and malondialdehyde (MDA) content increased with progressing developmental stages. BL, BW, LA, leaf dry weight, LT, PT, Pn, Gs, Pro, and the contents of MDA, indoleacetic acid, and zeatin riboside had significant positive correlations with canopy heights of leaves and their developmental stages. The morphological structures and physiological characteristics of P. pruinosa leaves showed more evident xeric structural characteristics and higher photosynthetic capacity with increasing canopy height and progressive developmental stages. Resource utilization efficiency and the defense ability against environmental stresses were improved through mutual regulation of each functional trait. [ABSTRACT FROM AUTHOR]

Simple Summary: Recilia dorsalis is a destructive insect pest in rice-producing regions of Asia. It causes enormous damage to rice crops by directly feeding on phloem-sap or transmitting various viral diseases. Like other insects, R. dorsalis harbors numerous symbiotic microorganisms that play important roles in host nutrition, adaptation, and stress resistance. To understand the interactions between microorganisms and their host insects, we analyzed the bacterial community structure and dynamics of the digestive and excretory systems of R. dorsalis at different developmental stages using high-throughput sequencing. We investigated the initial source of microorganisms in R. dorsalis and compared the bacterial community structure and abundance of each tissue at different developmental stages. In addition, we conducted an analysis of the core bacterial community of R. dorsalis and predicted its function. Our findings enhance our comprehension of the interactions between insects and symbiotic microorganisms, which may facilitate the establishment of novel biological control techniques against R. dorsalis. Recilia dorsalis is a notorious rice pest that harbors numerous symbiotic microorganisms. However, the structure and dynamics of bacterial communities in various tissues of R. dorsalis throughout its life cycle remain unclear. In this study, we used high-throughput sequencing technology to analyze the bacterial communities in the digestive, excretory, and reproductive systems of R. dorsalis at different developmental stages. The results showed that the initial microbiota in R. dorsalis mostly originated from vertical transmission via the ovaries. After the second-instar nymphs, the diversity of bacterial communities in the salivary gland and Malpighian tubules gradually decreased, while the midgut remained stable. Principal coordinate analysis revealed that the structure of bacterial communities in R. dorsalis was primarily influenced by the developmental stage, with minimal variation in bacterial species among different tissues but significant variation in bacterial abundance. Tistrella was the most abundant bacterial genus in most developmental stages, followed by Pantoea. The core bacterial community in R. dorsalis continuously enriched throughout development and contributed primarily to food digestion and nutrient supply. Overall, our study enriches our knowledge of the bacterial community associated with R. dorsalis and provides clues for developing potential biological control technologies against this rice pest. [ABSTRACT FROM AUTHOR]

Orange Chinese cabbage (Brassica rapa L. ssp. pekinensis) is an excellent source of health-promoting nutrients that could reduce the risk of chronic diseases. This study mainly investigated the accumulation patterns of eight lines of orange Chinese cabbage for indolic glucosinolates (GLSs) and pigment content from representative plant organs across multiple developmental stages. The indolic GLSs were highly accumulated at the rosette stage (S2), especially in inner and middle leaves, and the order of indolic GLSs accumulation in non-edible organs was flower > seed > stem > silique. The expression levels of biosynthetic genes in light signaling, MEP, carotenoids, and GLS pathways were consistent with the metabolic accumulation patterns. The results of a principal component analysis show a clear separation of high indolic GLS lines (15S1094 and 18BC6) from low indolic GLS lines (20S530). A negative correlation between the accumulation of indolic GLS and carotenoids was identified in our study. Our work contributes to providing valuable knowledge required to breed, grow, and select orange Chinese cabbage varieties and their eatable organs with higher nutritional value. [ABSTRACT FROM AUTHOR]

Industrialized seeding production is one of the most important methods used to raise seedlings in a standardized and efficient manner. However, its consumption of light energy limits its development. In this paper, we studied the effects of LED light intensities (30 (L1), 60 (L2), 90 (L3), 120 (L4), 150 (L5), 180 (L6), and 210 (L7) µmol·m−2·s−1) on the phenotypic parameters and health index of seedlings during different growth stages (cotyledon flattening (CF), one bud and one leaf (OBOL), and one bud and two leaves (OBTL)). Ten out of sixteen plants were selected to measure the parameters in every treatment. The control group was treated with 150 µmol·m−2·s−1 all the time. The results show that the height of the L1-treated plants was greatest during the cotyledon flattening stage. The L7 treatment produced the largest stem diameter, the greatest biomass, the largest leaf area, and the largest leaf circumference, the values of which were 2.61 mm, 3.3 g, 60.67 cm2, and 39.71 cm, respectively. During the one bud and one leaf stage, the L1 treatment produced the tallest plants. The L7 treatment resulted in the largest stem diameter, the greatest biomass, the largest leaf area, and the largest leaf circumference. During the one bud and two leaves stage, the plant height, stem diameter, leaf circumference, and biomass produced of the L6 treatment were the greatest, with values of 68.37 mm, 3.09 mm, 51.54 cm, and 4.47 g. L5 resulted in the largest leaf area (63.91 cm2). The seedling index of the three stages showed an inflection point at the L4 level. The experimental results showed that the light intensity required by the cucumber seedlings was 120 µmol·m−2·s−1, 150 µmol·m−2·s−1, and 120 µmol·m−2·s−1 during the three stages, from the cotyledon flattening stage to the one bud and two leaves stage. The results provide references regarding the light required during the cultivation of cucumber seedlings.

Specialized metabolites are produced via discrete metabolic pathways. These small molecules play significant roles in plant growth and development, as well as defense against environmental stresses. These include damping off or seedling blight at a post-emergence stage. Targeted metabolomics was followed to gain insights into metabolome changes characteristic of different developmental stages of sorghum seedlings. Metabolites were extracted from leaves at seven time points post-germination and analyzed using ultra-high performance liquid chromatography coupled to mass spectrometry. Multivariate statistical analysis combined with chemometric tools, such as principal component analysis, hierarchical clustering analysis, and orthogonal partial least squares–discriminant analysis, were applied for data exploration and to reduce data dimensionality as well as for the selection of potential discriminant biomarkers. Changes in metabolome patterns of the seedlings were analyzed in the early, middle, and late stages of growth (7, 14, and 29 days post-germination). The metabolite classes were amino acids, organic acids, lipids, cyanogenic glycosides, hormones, hydroxycinnamic acid derivatives, and flavonoids, with the latter representing the largest class of metabolites. In general, the metabolite content showed an increase with the progression of the plant growth stages. Most of the differential metabolites were derived from tryptophan and phenylalanine, which contribute to innate immune defenses as well as growth. Quantitative analysis identified a correlation of apigenin flavone derivatives with growth stage. Data-driven investigations of these metabolomes provided new insights into the developmental dynamics that occur in seedlings to limit post-germination mortality.

Ticks are one of the most important vectors of human and animal disease worldwide. In addition to pathogens, ticks carry a diverse microbiota of symbiotic and commensal microorganisms. In this study, we used next-generation sequencing (NGS) to survey the microbiomes of Haemaphysalis longicornis (Acari: Ixodidae) at different life stages collected from field populations in North Carolina (NC), USA. Sequence analyses were performed using QIIME2 with the DADA2 plugin and taxonomic assignments using the Greengenes database. Following quality filtering and rarefaction, the bacterial DNA sequences were assigned to 4795 amplicon sequence variants (ASVs) in 105 ticks. A core microbiome of H. longicornis was conserved across all ticks analyzed, and included bacterial taxa: Coxiella, Sphingomonas, Staphylococcus, Acinetobacter, Pseudomonas, Sphingomonadaceae, Actinomycetales, and Sphingobium. Less abundant bacterial taxa, including Rickettsia and Aeromonas, were also identified in some ticks. We discovered some ASVs that are associated with human and animal infections among the identified bacteria. Alpha diversity metrics revealed significant differences in bacterial diversity between life stages. Beta diversity metrics also revealed that bacterial communities across the three life stages were significantly different, suggesting dramatic changes in the microbiome as ticks mature. Based on these results, additional investigation is necessary to determine the significance of the Haemaphysalis longicornis microbiome for animal and human health.

Abstract Background Plants synthesize metabolites to adapt to a continuously changing environment. Metabolite biosynthesis often occurs in response to the tissue-specific combinatorial developmental cues that are transcriptionally regulated. Polyphyllins are the major bioactive components in Paris species that demonstrate hemostatic, anti-inflammatory and antitumor effects and have considerable market demands. However, the mechanisms underlying polyphyllin biosynthesis and regulation during plant development have not been fully elucidated. Results Tissue samples of P. polyphylla var. yunnanensis during the four dominant developmental stages were collected and investigated using high-performance liquid chromatography and RNA sequencing. Polyphyllin concentrations in the different tissues were found to be highly dynamic across developmental stages. Specifically, decreasing trends in polyphyllin concentration were observed in the aerial vegetative tissues, whereas an increasing trend was observed in the rhizomes. Consistent with the aforementioned polyphyllin concentration trends, different patterns of spatiotemporal gene expression in the vegetative tissues were found to be closely related with polyphyllin biosynthesis. Additionally, molecular dissection of the pathway components revealed 137 candidate genes involved in the upstream pathway of polyphyllin backbone biosynthesis. Furthermore, gene co-expression network analysis revealed 74 transcription factor genes and one transporter gene associated with polyphyllin biosynthesis and allocation. Conclusions Our findings outline the framework for understanding the biosynthesis and accumulation of polyphyllins during plant development and contribute to future research in elucidating the molecular mechanism underlying polyphyllin regulation and accumulation in P. polyphylla.

ABSTRACT The chicken gut microbiota plays an influential role in nutrient absorption and metabolism. A clear picture of microbiota succession can enhance host nutrition and disease resistance. This study investigated the cecal microbiota succession of broilers between 3 and 42 days after hatching using 16S rRNA gene sequencing and analyzed its potential association with intestinal nutrient metabolism. Microbiota structure differed significantly at different time points depending on the microbiota alpha-diversity or beta-diversity. Proteobacteria and Bacteroidetes promoted succession on days 3 to 7 and days 28 to 35, respectively. Firmicutes and Tenericutes maintained homeostasis on days 7 to 28 and days 35 to 42. Shigella, [Ruminococcus], Erysipelotrichaceae_Clostridium, and Coprobacillus promoted succession on days 3 to 7; Faecalibacterium modified microbial composition on days 7 to 14; Faecalibacterium and Bacteroides regulated microbial structure from days 21 to 28. The microbiota structure was relatively stable on days 14 to 21 and days 28 to 35. Spearman’s correlation analysis indicated a positive correlation between Lactobacillus and villus height and crypt depth (P

Neonicotinoid pesticides (NN) were recently reported to exhibit adverse effects in higher vertebrates. Moreover, NNs are routinely transferred from mother to offspring, raising concerns about their effects on future generations. The fetal and neonatal periods are the most critical to the formation of neural circuits in the brain through neurogenesis and differentiation, neuronal migration, axon guidance, and synaptogenesis. NN exposure throughout the fetal and neonatal periods was found to affect the neurobehavior of the offspring, but the stage-specific neurobehavioral effects are unclear. We exposed fetal and neonatal mice to a no-observed-adverseeffect level (NOAEL) of clothianidin (CLO) for 4 days during each of four developmental stages: neurite proliferation and differentiation (fetal days 9-12, CLO-1), neurite outgrowth (fetal days 15-18, CLO-2), synapse formation and astrocyte differentiation (days 1-4 after birth, CLO-3), and synapse remodeling (days 11-14 after birth, CLO-4). CLO's neurobehavioral effects were evaluated in juveniles and adults, revealing that CLO-1 and CLO-2 caused behavioral abnormalities in adult mice. CLO-3 significantly increased locomotor activity and decreased juvenile neurons in the hippocampal dentate gyrus in adulthood. Comprehensive gene analysis of CLO-3 revealed high expression of genes related to neurite outgrowth and axonal branching in the hippocampus in juveniles and adults. These results revealed developmental stage-specific effects of a NOAEL of CLO in the fetal and neonatal periods, suggesting that the susceptibility of the fetus and neonate to CLO varies by developmental stage. [ABSTRACT FROM AUTHOR]

• The primary vein development was mainly divided into three stages. • Pro-vasculature development preceded phloem development. • Decreased cell division and cell cycle activity and increased lignification biosynthesis contributed to primary vein arrangement. • The possible electron transfer pathway involving BpF5H1 and BpCB5s for patterning primary vein. Keymessage The study revealed the major biological processes occurred at three developmental stages and identified candidate genes involved in primary vein development of birch plants. Vascular tissues usually mirror the surrounding leaf shape and its development plays a fundamental role in plant performance. However, the information of vascular development in birch trees, especially primary vein development, remains unclear. Therefore, we conducted the anatomical observation on primary veins from leaves at different development stages in Betula pendula 'Dalecarlica'. With the development of primary vein, dynamic changes in mechanical tissue thickness and primary vein diameter were consistent with each other, and the sum of phloem, xylem and cambium thickness was significantly varied. Transcriptome analysis indicated that primary vein development could be divided into three stages, namely Stage I, II and III, which were in aggreement with anatomical observation. Expression of marker genes associated with vascular tissues revealed that pro-vasculature development occurred at Stage I and II, and phloem development occurred at Stage III. GO enrichment analysis of differentially expressed genes (DEGs) showed that shared DEGs at Stage II were mainly engaged in cell division and cell cycle, and shared DEGs at Stage III were mainly engaged in phosphorylation. Decreased cell division and cell cycle as well as activation of lignin biosynthesis might contribute to primary vein development. Combining phenotypic traits, we performed weighted gene co-expression network analysis and identified a cytochrome P450 84A (CYP84A) family gene (BpF5H1). Based on analyses of gene families, expression patterns and yeast-two hybrid assay results, we proposed a potential electron transfer pathway involving BpF5H1 and three cytochrome b 5 proteins during primary vein development in B. pendula 'Dalecarlica'. These results could shed some light on which biological processes occurred during primary vein formation and provide some valuable clues for vascular morphogenesis in woody plants. [ABSTRACT FROM AUTHOR]

Abstract Background Although coevolutionary signatures of host-microbe interactions are considered to engineer the healthy microbiome of humans, little is known about the changes in root-microbiome during plant evolution. To understand how the composition of the wheat and its ancestral species microbiome have changed over the evolutionary processes, we performed a 16S rRNA metagenomic analysis on rhizobacterial communities associated with a phylogenetic framework of four Triticum species T. urartu, T. turgidum, T. durum, and T. aestivum along with their ancestral species Aegilops speltoides, and Ae. tauschii during vegetative and reproductive stages. Results In this study, we illustrated that the genome contents of wild species Aegilops speltoides and Ae. tauschii can be significant factors determining the composition of root-associated bacterial communities in domesticated bread wheat. Although it was found that domestication and modern breeding practices might have had a significant impact on microbiome-plant interactions especially at the reproductive stage, we observed an extensive and selective control by wheat genotypes on associated rhizobacterial communities at the same time. Our data also showed a strong genotypic variation within species of T. aestivum and Ae. tauschii, suggesting potential breeding targets for plants surveyed. Conclusions This study performed with different genotypes of Triticum and Aegilops species is the first study showing that the genome contents of Ae. speltoides and Ae. tauschii along with domestication-related changes can be significant factors determining the composition of root-associated bacterial communities in bread wheat. It is also indirect evidence that shows a very extensive range of host traits and genes are probably involved in host-microbe interactions. Therefore, understanding the wheat root-associated microbiome needs to take into consideration of its polygenetic mosaic nature.

ABSTRACT Root-associated microbiomes are essential for the ecological function of the root system. However, their assembly mechanisms in wetland are poorly understood. In this study, we explored and compared the ecological processes of bacterial and fungal communities in water, bulk soil, rhizosphere soil, and root endosphere niches for 3 developmental stages of Typha orientalis at different wetland sites, and assessed the potential functions of root endosphere microbiomes with function prediction. Our findings suggest that the microbial diversity, composition, and interaction networks along the water-soil-plant continuum are shaped predominantly by compartment niche and developmental stage, rather than by wetland site. Source tracking analysis indicated that T. orientalis’ root endosphere is derived primarily from the rhizosphere soil (bacteria 39.9%, fungi 27.3%) and water (bacteria 18.9%, fungi 19.1%) niches. In addition, we found that the assembly of bacterial communities is driven primarily by deterministic processes and fungal communities by stochastic processes. The interaction network among microbes varies at different developmental stages of T. orientalis, and is accompanied by changes in microbial keystone taxa. The functional prediction data supports the distribution pattern of the bacterial and fungal microbiomes, which have different ecological roles at different plant developmental stages, where more beneficial bacterial taxa are observed in the root endosphere in the early stages, but more saprophytic fungi in the late stages. Our findings provide empirical evidence for the assembly, sources, interactions, and potential functions of wetland plant root microbial communities and have significant implications for the future applications of plant microbiomes in the wetland ecosystem. IMPORTANCE Our findings provide empirical evidence for the assembly, sources, interactions, and potential functions of wetland plant root microbial communities, and have significant implications for the future applications of plant microbiomes in the wetland ecosystem.

High-throughput RNA sequencing (RNA-seq) has recently become the method of choice to define and analyze transcriptomes. For the model moss Physcomitrella patens, although this method has been used to help analyze specific perturbations, no overall reference dataset has yet been established. In the framework of the Gene Atlas project, the Joint Genome Institute selected P. patens as a flagship genome, opening the way to generate the first comprehensive transcriptome dataset for this moss. The first round of sequencing described here is composed of 99 independent libraries spanning 34 different developmental stages and conditions. Upon dataset quality control and processing through read mapping, 28 509 of the 34 361 v3.3 gene models (83%) were detected to be expressed across the samples. Differentially expressed genes (DEGs) were calculated across the dataset to permit perturbation comparisons between conditions. The analysis of the three most distinct and abundant P. patens growth stages - protonema, gametophore and sporophyte - allowed us to define both general transcriptional patterns and stage-specific transcripts. As an example of variation of physico-chemical growth conditions, we detail here the impact of ammonium supplementation under standard growth conditions on the protonemal transcriptome. Finally, the cooperative nature of this project allowed us to analyze inter-laboratory variation, as 13 different laboratories around the world provided samples. We compare differences in the replication of experiments in a single laboratory and between different laboratories.

This study investigated the effects of developmental stage and store time on the chemical composition, microbial community, co-occurrence networks and fermentation characteristics of sweet sorghum silage. Sweet sorghum harvested at two developmental stages (heading stage, S1; hard dough stage, S2) was treated as follows: (I) natural fermentation of S1 (NS1); (II) natural fermentation of S2 (NS2) and ensiled for 1, 3, 7, 15, 30 and 60 days. After 60 days of ensiling, NS2 silage had higher lactic acid concentration and the ratio of lactic to acetic acid, and lower pH value and acetic acid concentration than NS1 silage. Meanwhile, NS2 silage also had higher ammonia nitrogen (NH3-N) content than NS1 silage, but the NH3-N content of both treatments was lower than 100 g/kg TN. Leuconostoc and Lactococcus were respectively dominant in both 7-day NS1 and NS2 silages, while Lactobacillus was the most abundant genus in 30-day NS1 and NS2 silages. The developmental stage altered the bacterial co-occurrence networks of fresh and ensiled sweet sorghum. Spearman's correlation heatmap showed that the higher lactic acid content and ratio of lactic to acetic acid in NS2 silage could be associated with the higher water-soluble carbohydrate content in S2 material, the higher abundance of Lactococcus in the initial phase of ensiling and the higher abundance of Lactobacillus in the late phase of ensiling. These results concluded that the sweet sorghum harvested at the hard dough stage is preferred for silage production over the sweet sorghum harvested at the heading stage. Microbial succession pattern was studied on fresh and ensiled samples. Growth stage affected the chemical and microbial parameters of sweet sorghum. Epiphytic microbiota was correlated with the chemical composition of forage. Metagenomic sequencing showed Lactobacillus was dominated in all silages. Growth stage accelerated the fermentation of sweet sorghum silage. [ABSTRACT FROM AUTHOR]

South China tigers (Panthera tigris amoyensis, SC) are the most threatened tiger subspecies in the world. All the living SCs are captive in zoos or reserves and depend on artificial feeding. The composition of the gut microbiome plays an important role in sustaining the health of the host. A comprehensive understanding of the composition and development of the microbial community of SC is helpful to improve the feeding of captive SC. In this study, we collected 47 fecal samples, 37 of which were from SC of three developmental stages, 5 from adult Amur tigers (Am), and 5 from adult Bengal tigers (Bg), which were all housed in the same zoo. We investigated the diversity, richness, and composition of the bacterial microbiomes and we found that the gut microbiome of SC is strongly affected by host aging. The composition of the gut microbiome of juvenile SC experienced dramatic changes from 5 months old to 1 year old, and it showed much less difference when compared to the samples of 1 year old and the subadult. No significant differences were observed between the samples of subadult and the adult groups. The predominant phylum of 5-month-old SC is Fusobacteriota (33.99%) when the juvenile tigers were older than 5 months, and Firmicutes, but not Fusobacteriota, became the predominant phylum of bacteria in their gut. The gut microbiome of SC, Am, and Bg is possibly affected by their genetic variation; however, the core microbiome of these three subspecies is the same. Our data suggest that the gut microbiome of SC undergoes a developmental progression: a developmental phase (cub), a transitional phase (subadult), and a stable phase (adult). These results expand our understanding of the role of age in the development of the gut microbiome of SC. [ABSTRACT FROM AUTHOR]

The flavor of guava, an important tropical fruit, is influenced by secondary metabolites. However, the mechanisms and processes underlying flavor formation in guava remain unclear. In this study, dynamic changes in volatile organic compounds (VOCs), sugars, and organic acids in guava peel and flesh across different developmental stages were investigated using headspace solid-phase microextraction (HS-SPME) combined with gas chromatography-mass spectrometry (GC-MS) and high-performance liquid chromatography (HPLC). Here, we identified 90 VOCs, three sugars and eight organic acids. The dynamics of VOCs differ between the flesh and peel. The early developmental stages are more critical in influencing the variation of VOCs in the flesh, while VOC changes in peel occur more progressively across the developmental stages. By integrating transcriptomic and metabolomic analyses, we identified several key genes involved in VOC, sugar, and acid metabolism. This is the first study to describe the expression patterns of these genes throughout guava development, providing new insights into guava flavor development., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2024 The Author(s).)

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Therefore, the detailed characterization of the gut microbes of I S. frugiperda i may help to develop novel pest biological control strategies through the elimination of important symbiotic microorganisms or the discovery of entomopathogenic microorganisms. Therefore, in this study, we systematically explored the changes of microorganisms of I S. frugiperda i at each developmental stage, and the differences of gut microorganisms of I S. frugiperda i in different living environments (field and laboratory) and different foods (corn and artificial diet). The analysis of the gut microbiota of susceptible, insecticide-resistant strains and field populations of I S. frugiperda i indicates that the gut microbes have a high diversity and the ability to metabolize insecticides in field populations of I S. frugiperda i [[24]]. [Extracted from the article]

Genetic control of tree growth and wood formation varies depending on the age of the tree and the time of the year. Single-locus, multi-locus, and multi-trait genome-wide association studies (GWAS) were conducted on 34 growth and wood property traits in 1,303 Norway spruce individuals using exome capture to cover ∼130K single-nucleotide polymorphisms (SNPs). GWAS identified associations to the di􀀀erent wood traits in a total of 85 gene models, and several of these were validated in a progenitor population. Amulti-locus GWASmodel identifiedmore SNPs associated with the studied traits than single-locus or multivariate models. Changes in tree age and annual season influenced the genetic architecture of growth and wood properties in unique ways, manifested by non-overlapping SNP loci. In addition to completely novel candidate genes, SNPs were located in genes previously associated with wood formation, such as cellulose synthases and a NAC transcription factor, but that have not been earlier linked to seasonal or age-dependent regulation of wood properties. Interestingly, SNPs associated with the width of the year rings were identified in homologs of Arabidopsis thaliana BARELY ANY MERISTEM 1 and rice BIG GRAIN 1, which have been previously shown to control cell division and biomass production. The results provide tools for future Norway spruce breeding and functional studies. [ABSTRACT FROM AUTHOR]

Background: Plants synthesize metabolites to adapt to a continuously changing environment. Metabolite biosynthesis often occurs in response to the tissue-specific combinatorial developmental cues that are transcriptionally regulated. Polyphyllins are the major bioactive components in Paris species that demonstrate hemostatic, anti-inflammatory and antitumor effects and have considerable market demands. However, the mechanisms underlying polyphyllin biosynthesis and regulation during plant development have not been fully elucidated. Results: Tissue samples of P. polyphylla var. yunnanensis during the four dominant developmental stages were collected and investigated using high-performance liquid chromatography and RNA sequencing. Polyphyllin concentrations in the different tissues were found to be highly dynamic across developmental stages. Specifically, decreasing trends in polyphyllin concentration were observed in the aerial vegetative tissues, whereas an increasing trend was observed in the rhizomes. Consistent with the aforementioned polyphyllin concentration trends, different patterns of spatiotemporal gene expression in the vegetative tissues were found to be closely related with polyphyllin biosynthesis. Additionally, molecular dissection of the pathway components revealed 137 candidate genes involved in the upstream pathway of polyphyllin backbone biosynthesis. Furthermore, gene co-expression network analysis revealed 74 transcription factor genes and one transporter gene associated with polyphyllin biosynthesis and allocation. Conclusions: Our findings outline the framework for understanding the biosynthesis and accumulation of polyphyllins during plant development and contribute to future research in elucidating the molecular mechanism underlying polyphyllin regulation and accumulation in P. polyphylla. [ABSTRACT FROM AUTHOR]

The microbiome in gastrointestinal tracts play an important role in regulating nutrient utilization and absorption, gut immune function, and host growth or development. This study was conducted to investigate the composition and dynamic distribution of caecal microbiota in pullets during the first 16 weeks. Growth performance, immune organs index, and intestinal morphology of pullets were analyzed at 3, 6, 12 and 16 weeks of age. The caecal contents were collected for microbiota analysis by 16S rRNA gene sequencing method. With advancing ages in pullets, the gradually increased average daily feed intake (ADFI), feed conversion ratio (FCR) and intestinal villus height, but the gradually decreased organs index of thymus and bursa were determined. Meanwhile, more abundant caecal bacterial communities were determined from pullets at 12 and 16 weeks of age than those at 3 and 6 weeks of age. Furthermore, the dominant microflora of pullets from different weeks of age were analyzed by using LEfSe: The higher abundance of Blautia, Prevotella, Alistipes, and Eggerthella were found at 6 weeks; Anaerostipes, Oscillospira, Enterococcus and Methanobrevibacter were determined at 12 weeks; and the higher abundance of Parabacteroides, Anaerofustis, Lactobacillus and Butyricimonas were determined at 16 weeks. Further functional predicted analysis by PICRUSt revealed that the endocrine system and carbohydrate metabolism were significantly developed at 3 weeks. The development of the immune system was predicted to be mainly during 6 to 12 weeks, while cardiovascular diseases and circulatory system were during 12 to 16 weeks. In addition, the significantly negative correlation between Bacteroides and villus height, the significantly negative correlation between growth parameters (ADFI and FCR) and Bacteroides, Oscillospira and Alistipes; and the significantly positive relations between growth parameters (ADFI and FCR) and Bilophila, Lactobacillus, Rikenella and Anaerofustis were determined by using Pearson analyses. In conclusion, our data demonstrated that growth performance and intestinal morphology correlate well with caecal microbiota, which could provide new insights to establish or develop nutritional strategies to manage the intestinal health or development of laying pullets.

Abstract Background Characterization of the molecular mechanisms underlying hair follicle development is of paramount importance in the genetic improvement of wool-related traits in sheep and skin-related traits in humans. The Merino is the most important breed of fine-wooled sheep in the world. In this study, we systematically investigated the complexity of sheep hair follicle development by integrating transcriptome and methylome datasets from Merino sheep skin. Results We analysed 72 sequence datasets, including DNA methylome and the whole transcriptome of four gene types, i.e. protein-coding genes (PCGs), lncRNAs, circRNAs, and miRNAs, across four embryonic days (E65, E85, E105, and E135) and two postnatal days (P7 and P30) from the skin tissue of 18 Merino sheep. We revealed distinct expression profiles of these four gene types across six hair follicle developmental stages, and demonstrated their complex interactions with DNA methylation. PCGs with stage-specific expression or regulated by stage-specific lncRNAs, circRNAs, and miRNAs were significantly enriched in epithelial differentiation and hair follicle morphogenesis. Regulatory network and gene co-expression analyses identified key transcripts controlling hair follicle development. We further predicted transcriptional factors (e.g. KLF4, LEF1, HOXC13, RBPJ, VDR, RARA, and STAT3) with stage-specific involvement in hair follicle morphogenesis. Through integrating these stage-specific genomic features with results from genome-wide association studies (GWAS) of five wool-related traits in 7135 Merino sheep, we detected developmental stages and genes that were relevant with wool-related traits in sheep. For instance, genes that were specifically upregulated at E105 were significantly associated with most of wool-related traits. A phenome-wide association study (PheWAS) demonstrated that candidate genes of wool-related traits (e.g. SPHK1, GHR, PPP1R27, CSRP2, EEF1A2, and PTPN1) in sheep were also significantly associated with dermatological, metabolic, and immune traits in humans. Conclusions Our study provides novel insights into the molecular basis of hair follicle morphogenesis and will serve as a foundation to improve breeding for wool traits in sheep. It also indicates the importance of studying gene expression in the normal development of organs in understanding the genetic architecture of economically important traits in livestock. The datasets generated here are useful resources for functionally annotating the sheep genome, and for elucidating early skin development in mammals, including humans.

Purpose: The efficiency of callus induction as source of bioactive compound is a critical step in the cell suspension culture for commercial production of important secondary metabolites. One of the main factors affecting callus efficiency is the developmental stage of explants. On the other hands, it has been declared that the optimization of medium composition has a significant influence on callogenesis and increment of biomass. Research method: The aim of this study was the evaluation of different developmental stages of saffron corms as a source of explant preparation (immature and mature corms), plant growth regulators (PGRs) combinations (1-Naphthaleneacetic acid (NAA); 2, 4-dichlorophenoxyacetic acid (2,4-D); 6-Benzyladenine (BA) and kinetin (Kin)) and type of medium (Gamborg (B5) medium and Murashige and Skoog (MS) medium) in callus induction in saffron corms to increase cell biomass. The media were supplemented with different combinations of 1-Naphthaleneacetic acid or 2, 4-dichlorophenoxyacetic acid (2, 4, 8 mgL-1) as auxins and 6-Benzyladenine or kinetin (1, 4, 8 mgL-1) as cytokinin. Findings: The results showed that mature corms harvested in May had the best developmental stage for callogenesis. The maximum callus formation was recorded in B5 medium supplemented with 2,4-dichlorophenoxyacetic acid (4 mgL-1) and kinetin (1 mgL-1) with 2.61 g fresh weight. Limitations: No limitations to report. Originality/Value: This protocol for sampling explant and callus formation was found to make suitable sources of plant material for further study in production of bioactive compounds via cell suspension cultures.