200 results on '"conical intersections"'
Search Results
2. The Committor in Quantum Systems for Transition States, Reaction Mechanisms, and Coherent Control
- Author
-
Anderson, Michelle
- Subjects
Computational chemistry ,Physical chemistry ,Quantum physics ,conical intersections ,polaritons ,quantum coherent effects ,reaction mechanisms ,Redfield master equation ,transition path theory - Abstract
Understanding reaction dynamics in chemical systems is the first step towards manipulating those reactions to improve efficiency or avoid undesired products. Computational modeling plays a central role in the understanding of reaction dynamics, with that role ever increasing as computational power grows. Such modeling remains challenging, however. Studying reaction mechanisms in classical systems often proves extremely complicated due to the rare nature of reactive events and the many degrees of freedom that are involved. Classical reactions in solution are complicated further by the interactions of the system with the solvent degrees of freedom. The study of reaction mechanisms becomes more complicated still in quantum systems, where confounding behaviors such as interference and tunneling may occur.Many powerful methods for understanding classical reaction mechanisms, adept at circumventing the problems posed by many degrees of freedom and rare events, have been developed, including transition path theory. Transition path theory is a method built on the committor, the probability for a reaction to occur, which defines a perfect reaction coordinate and the transition state. In this thesis we employ the Redfield quantum master equations to extend transition path theory to address the problems in common between classical and quantum reaction mechanism studies as well as those unique to quantum reactions. We extend this quantum transition path theory to address systems in and out of equilibrium, then derive a general quantum committor which is applicable to the study of systems in which the assumptions underlying quantum transition path theory do not apply, allowing us to quantify the impact of coherent effects on quantum reactions and propose means for coherent quantum control.
- Published
- 2024
3. Imaging conical intersection dynamics during azobenzene photoisomerization by ultrafast X-ray diffraction
- Author
-
Keefer, Daniel, Aleotti, Flavia, Rouxel, Jérémy R, Segatta, Francesco, Gu, Bing, Nenov, Artur, Garavelli, Marco, and Mukamel, Shaul
- Subjects
X-ray diffraction ,conical intersections ,ultrafast dynamics ,vibronic coherence - Abstract
X-ray diffraction is routinely used for structure determination of stationary molecular samples. Modern X-ray photon sources, e.g., from free-electron lasers, enable us to add temporal resolution to these scattering events, thereby providing a movie of atomic motions. We simulate and decipher the various contributions to the X-ray diffraction pattern for the femtosecond isomerization of azobenzene, a textbook photochemical process. A wealth of information is encoded besides real-time monitoring of the molecular charge density for the cis to trans isomerization. In particular, vibronic coherences emerge at the conical intersection, contributing to the total diffraction signal by mixed elastic and inelastic photon scattering. They cause distinct phase modulations in momentum space, which directly reflect the real-space phase modulation of the electronic transition density during the nonadiabatic passage. To overcome the masking by the intense elastic scattering contributions from the electronic populations in the total diffraction signal, we discuss how this information can be retrieved, e.g., by employing very hard X-rays to record large scattering momentum transfers.
- Published
- 2021
4. Visualizing conical intersection passages via vibronic coherence maps generated by stimulated ultrafast X-ray Raman signals
- Author
-
Keefer, Daniel, Schnappinger, Thomas, de Vivie-Riedle, Regina, and Mukamel, Shaul
- Subjects
Computer Simulation ,Models ,Chemical ,Spectrum Analysis ,Raman ,Uracil ,X-ray stimulated Raman ,conical intersections ,vibronic coherences ,ultrafast dynamics ,physics.chem-ph - Abstract
The rates and outcomes of virtually all photophysical and photochemical processes are determined by conical intersections. These are regions of degeneracy between electronic states on the nuclear landscape of molecules where electrons and nuclei evolve on comparable timescales and thus become strongly coupled, enabling radiationless relaxation channels upon optical excitation. Due to their ultrafast nature and vast complexity, monitoring conical intersections experimentally is an open challenge. We present a simulation study on the ultrafast photorelaxation of uracil, based on a quantum description of the nuclei. We demonstrate an additional window into conical intersections obtained by recording the transient wavepacket coherence during this passage with an X-ray free-electron laser pulse. Two major findings are reported. First, we find that the vibronic coherence at the conical intersection lives for several hundred femtoseconds and can be measured during this entire time. Second, the time-dependent energy-splitting landscape of the participating vibrational and electronic states is directly extracted from Wigner spectrograms of the signal. These offer a physical picture of the quantum conical intersection pathways through visualizing their transient vibronic coherence distributions. The path of a nuclear wavepacket in the vicinity of the conical intersection is directly mapped by the proposed experiment.
- Published
- 2020
5. Modeling Excited States of Molecular Organic Aggregates for Optoelectronics.
- Author
-
Hernández, Federico J. and Crespo-Otero, Rachel
- Abstract
Light-driven phenomena in organic molecular aggregates underpin several mechanisms relevant to optoelectronic applications. Modeling these processes is essential for aiding the design of new materials and optimizing optoelectronic devices. In this review, we cover the use of different atomistic models, excited-state dynamics, and transport approaches for understanding light-activated phenomena in molecular aggregates, including radiative and nonradiative decay pathways. We consider both intra- and intermolecular mechanisms and focus on the role of conical intersections as facilitators of internal conversion. We explore the use of the exciton models for Frenkel and charge transfer states and the electronic structure methods and algorithms commonly applied for excited-state dynamics. Throughout the review, we analyze the approximations employed for the simulation of internal conversion, intersystem crossing, and reverse intersystem crossing rates and analyze the molecular processes behind single fission, triplet-triplet annihilation, Dexter energy transfer, and Förster energy transfer. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
6. Ultrafast X-Ray Probes of Elementary Molecular Events.
- Author
-
Keefer, Daniel, Cavaletto, Stefano M., Rouxel, Jérémy R., Garavelli, Marco, Yong, Haiwang, and Mukamel, Shaul
- Abstract
Elementary events that determine photochemical outcomes and molecular functionalities happen on the femtosecond and subfemtosecond timescales. Among the most ubiquitous events are the nonadiabatic dynamics taking place at conical intersections. These facilitate ultrafast, nonradiative transitions between electronic states in molecules that can outcompete slower relaxation mechanisms such as fluorescence. The rise of ultrafast X-ray sources, which provide intense light pulses with ever-shorter durations and larger observation bandwidths, has fundamentally revolutionized our spectroscopic capabilities to detect conical intersections. Recent theoretical studies have demonstrated an entirely new signature emerging once a molecule traverses a conical intersection, giving detailed insights into the coupled nuclear and electronic motions that underlie, facilitate, and ultimately determine the ultrafast molecular dynamics. Following a summary of current sources and experiments, we survey these techniques and provide a unified overview of their capabilities. We discuss their potential to dramatically increase our understanding of ultrafast photochemistry. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
7. Progress and Perspectives of Spectroscopic Studies on Carbon K-Edge Using Novel Soft X-ray Pulsed Sources.
- Author
-
Ebrahimpour, Zeinab, Coreno, Marcello, Giannessi, Luca, Ferrario, Massimo, Marcelli, Augusto, Nguyen, Federico, Rezvani, Seyed Javad, Stellato, Francesco, and Villa, Fabio
- Subjects
SOFT X rays ,FEMTOSECOND pulses ,FREE electron lasers ,TIME-resolved spectroscopy ,PHOTOELECTRON spectroscopy ,PUMP probe spectroscopy ,HARMONIC generation ,STRUCTURAL dynamics - Abstract
The development of novel coherent and brilliant sources, such as soft X-ray free electron laser (FEL) and high harmonic generation (HHG), enables new ultrafast analysis of the electronic and structural dynamics of a wide variety of materials. Soft X-ray FEL delivers high-brilliance beams with a short pulse duration, high spatial coherence and photon energy tunability. In comparison with FELs, HHG X-ray sources are characterized by a wide spectral bandwidth and few- to sub-femtosecond pulses. The approach will lead to the time-resolved reconstruction of molecular dynamics, shedding light on different photochemical pathways. The high peak brilliance of soft X-ray FELs facilitates investigations in a nonlinear regime, while the broader spectral bandwidth of the HHG sources may provide the simultaneous probing of multiple components. Significant technical breakthroughs in these novel sources are under way to improve brilliance, pulse duration, and to control spectral bandwidth, spot size, and energy resolution. Therefore, in the next few years, the new generation of soft X-ray sources combined with novel experimental techniques, new detectors, and computing capabilities will allow for the study of several extremely fast dynamics, such as vibronic dynamics. In the present review, we discuss recent developments in experiments, performed with soft X-ray FELs and HHG sources, operating near the carbon K-absorption edge, being a key atomic component in biosystems and soft materials. Different spectroscopy methods such as time-resolved pump-probe techniques, nonlinear spectroscopies and photoelectron spectroscopy studies have been addressed in an attempt to better understand fundamental physico-chemical processes. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
8. Topological Properties of the 2D 2-Band System with Generalized W-Shaped Band Inversion.
- Author
-
Rukelj, Zoran and Radić, Danko
- Subjects
QUANTUM Hall effect ,TOPOLOGICAL property ,ANOMALOUS Hall effect ,GEOMETRIC quantum phases ,BAND gaps ,ENERGY bands ,MAGNETOTELLURICS - Abstract
We report the topological properties, in terms of the Berry phase, of the 2D noninteracting system with electron–hole band inversion, described by the two-band generalized analogue of the low-energy Bernevig–Hughes–Zhang Hamiltonian, yielding the W-shaped energy bands in the form of two intersecting cones with the gap along the closed continuous loop. We identify the range of parameters where the Berry phase attains qualitatively different values: (a) the integer multiplier of 2 π , (b) the integer multiplier of π , and (c) the nontrivial value between the latter two, which depends on the system parameters. The system thus exhibits the anomalous quantum Hall effect associated with the nontrivial geometric phase, which is presumably tunable through the choice of parameters at hand. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
9. Multiscale wavelet decomposition of time-resolved X-ray diffraction signals in cyclohexadiene.
- Author
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Osipov, Vladimir, Kowalewski, Markus, and Mukamel, Shaul
- Subjects
chemical reaction movies ,conical intersections ,multiscale charge density analysis ,ultrafast X-ray diffraction ,wavelet transform - Abstract
We demonstrate how the wavelet transform, which is a powerful tool for compression, filtering, and scaling analysis of signals, may be used to separate large- and short-scale electron density features in X-ray diffraction patterns. Wavelets can isolate the electron density associated with delocalized bonds from the much stronger background of highly localized core electrons. The wavelet-processed signals clearly reveal the bond formation and breaking in the early steps of the photoinduced pericyclic ring opening reaction of 1,3-cyclohexadiene, which are not resolved in the bare signal.
- Published
- 2018
10. Meta-Ortho Effect on the Excited State Pathways of Chloroanilines
- Author
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Nitu, Cristina, van der Wal, Jacob Jan, Kaul, Nidhi, Steen, Jorn D., Hammarström, Leif, Fagnoni, Maurizio, Crespi, Stefano, Nitu, Cristina, van der Wal, Jacob Jan, Kaul, Nidhi, Steen, Jorn D., Hammarström, Leif, Fagnoni, Maurizio, and Crespi, Stefano
- Abstract
Direct excitation of aromatic compounds grants access to high-energy intermediates that can be utilised in organic synthesis. Understanding and predicting the substituent effects at the excited state for aromatic molecules remains challenging for the synthetic photochemist. In this work, we present an experimental and computational investigation of the excited state of the isomeric chloroanilines, which promptly react by losing the chloride when the amino group is in para position, but are non-reactive and non-emissive in the meta and ortho isomers. XMS-CASPT2//CASSCF computations explain this apparent contradiction of the meta-ortho selectivity rule of Zimmerman, which originates from the substituent effects lowering to a different extent the barrier to populate the prefulvenic conical intersection that deactivates non-radiatively the singlet excited state of the chloroanilines. Computational chemistry allows to elucidate the observed selectivity in the photochemistry of chloroanilines. A meta-ortho effect of the substituents favours the population of the prefulvenic conical intersection which leads to rapid deactivation of the m- and o-isomers of chloroaniline, while the para derivative lives long enough to emit and populate the reactive triplet state which leads to C-Cl dissociation.+image
- Published
- 2024
- Full Text
- View/download PDF
11. Competition between collective and individual conical intersection dynamics in an optical cavity.
- Author
-
Csehi, András, Vendrell, Oriol, Halász, Gábor J, and VibĂłk, Ăgnes
- Subjects
- *
OPTICAL resonators , *SINGLE molecules , *ELECTROMAGNETIC fields , *DEGREES of freedom , *PHASES of matter , *POLARITONS - Abstract
Light-induced nonadiabatic phenomena arise when molecules or molecular ensembles are exposed to resonant external electromagnetic fields. The latter can either be classical laser or quantized cavity radiation fields, which can couple to either the electronic, nuclear or rotational degrees of freedom of the molecule. In the case of quantized radiation fields, the lightâ€"matter coupling results in the formation of two new hybrid lightâ€"matter states, namely the upper and lower â€polaritons’. Light-induced avoided crossings and light-induced conical intersections (CIs) between polaritons exist as a function of the vibrational and rotational coordinates of single molecules. For ensembles of N molecules, the N â' 1 dark states between the two optically active polaritons feature, additionally, so-called collective CIs, involving the coordinates of more than one molecule to form. Here, we study the competition between intramolecular and collective light-induced nonadiabatic phenomena by comparing the escape rate from the Franckâ€"Condon region of a single molecule and of a molecular ensemble coupled to a cavity mode. In situations where the polaritonic gap would be large and the dark-state decay channels could not be reached effectively, the presence of a seam of light-induced CI between the polaritons facilitates again the participation of the dark manifold, resulting in a cooperative effect that determines the overall non-radiative decay rate from the upper into the lower polaritonic states. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
12. Spin-Mapping Methods for Simulating Ultrafast Nonadiabatic Dynamics
- Author
-
Johan E. Runeson, Jonathan R. Mannouch, Graziano Amati, Marit R. Fiechter, and Jeremy O. Richardson
- Subjects
Conical intersections ,Light harvesting ,Nonadiabatic dynamics ,Nonlinear spectroscopy ,Quantum-classical ,Spin mapping ,Chemistry ,QD1-999 - Abstract
Many chemical reactions exhibit nonadiabatic effects as a consequence of coupling between electronic states and/or interaction with light. While a fully quantum description of nonadiabatic reactions is unfeasible for most realistic molecules, a more computationally tractable approach is to combine a classical description of the nuclei with a quantum description of the electronic states. Combining the formalisms of quantum and classical dynamics is however a difficult problem for which standard methods (such as Ehrenfest dynamics and surface hopping) may be insufficient. In this article, we review a new trajectory-based approach developed in our group that is able to describe nonadiabatic dynamics with a higher accuracy than previous approaches but for a similar level of computational effort. This method treats the electronic states with a phase-space representation for discrete-level systems, which in the two-level case is analogous to a spin-½. We point out the key features of the method and demonstrate its use in a variety of applications, including ultrafast transfer through conical intersections, damped coherent excitation under coupling to a strong light field, and nonlinear spectroscopy of light-harvesting complexes.
- Published
- 2022
- Full Text
- View/download PDF
13. Conformer-Specific Dissociation Dynamics in Dimethyl Methylphosphonate Radical Cation.
- Author
-
Singh, Vaibhav, López Peña, Hugo A., Shusterman, Jacob M., Vindel-Zandbergen, Patricia, Tibbetts, Katharine Moore, and Matsika, Spiridoula
- Subjects
- *
RADICAL cations , *DIMETHYL methylphosphonate , *SURFACE dynamics , *COORDINATE covalent bond , *BIOMOLECULES - Abstract
The dynamics of the dimethyl methylphosphonate (DMMP) radical cation after production by strong field adiabatic ionization have been investigated. Pump-probe experiments using strong field 1300 nm pulses to adiabatically ionize DMMP and a 800 nm non-ionizing probe induce coherent oscillations of the parent ion yield with a period of about 45 fs. The yields of two fragments, PO2C2H7+ and PO2CH4+, oscillate approximately out of phase with the parent ion, but with a slight phase shift relative to each other. We use electronic structure theory and nonadiabatic surface hopping dynamics to understand the underlying dynamics. The results show that while the cation oscillates on the ground state along the P=O bond stretch coordinate, the probe excites population to higher electronic states that can lead to fragments PO2C2H7+ and PO2CH4+. The computational results combined with the experimental observations indicate that the two conformers of DMMP that are populated under experimental conditions exhibit different dynamics after being excited to the higher electronic states of the cation leading to different dissociation products. These results highlight the potential usefulness of these pump-probe measurements as a tool to study conformer-specific dynamics in molecules of biological interest. [ABSTRACT FROM AUTHOR]
- Published
- 2022
- Full Text
- View/download PDF
14. Photoinduced Phenomena in 6,6'-Dibromoindigo (Tyrian Purple): a Theoretical Study.
- Author
-
Delchev, Vassil B.
- Subjects
- *
EXCITED states , *VISIBLE spectra - Abstract
The compound 6,6'-dibromoindigo, which is the main component of the pigment Tyrian purple, was studied theoretically at the TDDFT level of theory. We found that the absorption maximum of the compound about 600 nm underwent a red-shift when moving from the gas phase in solution. With the located two conical intersections S0/S0 we investigated (TD-DFT) the mechanisms connecting these structures with the ground state equilibrium geometry. It was established that the conical intersections are not accessible along any of the excited-state reaction paths which implies optical deactivation of the first excited state of the compound. With respect to these mechanisms the pigment should exhibit high photostability when exposed to visible light. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
15. Progress and Perspectives of Spectroscopic Studies on Carbon K-Edge Using Novel Soft X-ray Pulsed Sources
- Author
-
Zeinab Ebrahimpour, Marcello Coreno, Luca Giannessi, Massimo Ferrario, Augusto Marcelli, Federico Nguyen, Seyed Javad Rezvani, Francesco Stellato, and Fabio Villa
- Subjects
soft X-ray FEL ,HHG pulses ,time-resolved X-ray spectroscopy ,carbon K-edge ,conical intersections ,EuPRAXIA@SPARC_LAB ,Physics ,QC1-999 - Abstract
The development of novel coherent and brilliant sources, such as soft X-ray free electron laser (FEL) and high harmonic generation (HHG), enables new ultrafast analysis of the electronic and structural dynamics of a wide variety of materials. Soft X-ray FEL delivers high-brilliance beams with a short pulse duration, high spatial coherence and photon energy tunability. In comparison with FELs, HHG X-ray sources are characterized by a wide spectral bandwidth and few- to sub-femtosecond pulses. The approach will lead to the time-resolved reconstruction of molecular dynamics, shedding light on different photochemical pathways. The high peak brilliance of soft X-ray FELs facilitates investigations in a nonlinear regime, while the broader spectral bandwidth of the HHG sources may provide the simultaneous probing of multiple components. Significant technical breakthroughs in these novel sources are under way to improve brilliance, pulse duration, and to control spectral bandwidth, spot size, and energy resolution. Therefore, in the next few years, the new generation of soft X-ray sources combined with novel experimental techniques, new detectors, and computing capabilities will allow for the study of several extremely fast dynamics, such as vibronic dynamics. In the present review, we discuss recent developments in experiments, performed with soft X-ray FELs and HHG sources, operating near the carbon K-absorption edge, being a key atomic component in biosystems and soft materials. Different spectroscopy methods such as time-resolved pump-probe techniques, nonlinear spectroscopies and photoelectron spectroscopy studies have been addressed in an attempt to better understand fundamental physico-chemical processes.
- Published
- 2022
- Full Text
- View/download PDF
16. UV-excitation from an experimental perspective: frequency resolved.
- Author
-
de Vries, Mattanjah S
- Subjects
Cytosine ,Uracil ,Thymine ,Adenine ,Guanine ,Spectrum Analysis ,Ultraviolet Rays ,Energy Transfer ,Molecular Structure ,Base Pairing ,Stereoisomerism ,Hydrogen Bonding ,Electrons ,Photochemical Processes ,Clusters ,Conical intersections ,DNA bases ,Hole burning ,Nucleotides ,R2PI ,REMPI ,General Chemistry ,Chemical Sciences - Abstract
Electronic spectroscopy of DNA bases in the gas phase provides detailed information about the electronic excitation, which places the molecule in the Franck-Condon region in the excited state and thus prepares the starting conditions for excited-state dynamics. Double resonance or hole-burning spectroscopy in the gas phase can provide such information with isomer specificity, probing the starting potential energy landscape as a function of tautomeric form, isomeric structure, or hydrogen bonded or stacked cluster structure. Action spectroscopy, such REMPI, can be affected by excited-state lifetimes.
- Published
- 2015
17. Understanding molecular dynamics with coherent vibrational spectroscopy in the time-domain
- Author
-
Liebel, Matz and Kukura, Philipp
- Subjects
621.36 ,Laser Spectroscopy ,Photochemistry and reaction dynamics ,Physical & theoretical chemistry ,Spectroscopy and molecular structure ,Atomic and laser physics ,ultrafast spectroscopy ,time-domain Raman ,nonlinear optics ,conical intersections ,vibronic coupling - Abstract
This thesis describes the development of several spectroscopic methods based on impulsive vibrational spectroscopy as well as of the technique itself. The first chapter describes the ultrafast time domain Raman spectrometer including the development of two noncollinear optical parametric amplifiers for sub-10 fs pulse generation with 343 or 515 nm pumping. In the first spectroscopic study we demonstrate, for the first time, that impulsive vibrational spectroscopy can be used for recording transient Raman spectra of molecules in excited electronic states. We obtain spectra of beta-carotene with comparable, or better, quality than established frequency domain based nonlinear Raman techniques. The following two chapters address the questions on the fate of vibrational coherences when generated on a reactive potential energy surface. We photoexcite bacteriorhodopsin and observe anharmonic coupling mediated vibrational coherence transfer to initially silent vibrational modes. Additionally, we are able to correlate the vibrational coherence activation with the efficiency of the isomerisation reaction in bR. Upon generation of vibrational coherence in the second excited electronic state of beta-carotene, by excitation from the ground electronic state, we are able to follow the wavepacket motion out of the Franck-Condon region. We observe vibrationally coherent internal conversion, through a conical intersection, into the first excited electronic state and are hence able to demonstrate that electronic surface crossings can occur in a vibrationally coherent fashion. Additionally, we find strong evidence for vibronic coupling mediated back and forth crossing between the two electronic states. As a combination of this work we develop a IVS based technique that allows for the direct recording of background and baseline free Raman spectra in the time domain. Several proof of principle experiments highlight the capabilities of this technique for time resolved Raman spectroscopy. In the final chapter we present work on weak-field coherent control. Here, we address the question of whether a photochemical reaction can be controlled by the phase term of an electric excitation field, in the one photon excitation limit. We study the systems rhodamine 101, bacteriorhodopsin, rhodopsin and isorhodopsin and, contrary to previous reports, find no evidence for one photon control.
- Published
- 2014
18. UV-Excitation from an Experimental Perspective: Frequency Resolved
- Author
-
de Vries, Mattanjah S
- Subjects
Adenine ,Base Pairing ,Cytosine ,Electrons ,Energy Transfer ,Guanine ,Hydrogen Bonding ,Molecular Structure ,Photochemical Processes ,Spectrum Analysis ,Stereoisomerism ,Thymine ,Ultraviolet Rays ,Uracil ,Clusters ,Conical intersections ,DNA bases ,Hole burning ,Nucleotides ,R2PI ,REMPI ,Chemical Sciences ,General Chemistry - Abstract
Electronic spectroscopy of DNA bases in the gas phase provides detailed information about the electronic excitation, which places the molecule in the Franck-Condon region in the excited state and thus prepares the starting conditions for excited-state dynamics. Double resonance or hole-burning spectroscopy in the gas phase can provide such information with isomer specificity, probing the starting potential energy landscape as a function of tautomeric form, isomeric structure, or hydrogen bonded or stacked cluster structure. Action spectroscopy, such REMPI, can be affected by excited-state lifetimes.
- Published
- 2014
19. Editorial: Vibrationally-Mediated Chemical Dynamics
- Author
-
Jacob C. Dean, Doran I. G. Bennett, Michael Staniforth, and Margherita Maiuri
- Subjects
spectroscopy ,density functional theory ,conical intersections ,vibronic coupling ,isomerization ,Chemistry ,QD1-999 - Published
- 2021
- Full Text
- View/download PDF
20. Conformer-Specific Dissociation Dynamics in Dimethyl Methylphosphonate Radical Cation
- Author
-
Vaibhav Singh, Hugo A. López Peña, Jacob M. Shusterman, Patricia Vindel-Zandbergen, Katharine Moore Tibbetts, and Spiridoula Matsika
- Subjects
strong field ionization ,nonadiabatic dynamics ,conical intersections ,excited states ,radical cation ,conformers ,Organic chemistry ,QD241-441 - Abstract
The dynamics of the dimethyl methylphosphonate (DMMP) radical cation after production by strong field adiabatic ionization have been investigated. Pump-probe experiments using strong field 1300 nm pulses to adiabatically ionize DMMP and a 800 nm non-ionizing probe induce coherent oscillations of the parent ion yield with a period of about 45 fs. The yields of two fragments, PO2C2H7+ and PO2CH4+, oscillate approximately out of phase with the parent ion, but with a slight phase shift relative to each other. We use electronic structure theory and nonadiabatic surface hopping dynamics to understand the underlying dynamics. The results show that while the cation oscillates on the ground state along the P=O bond stretch coordinate, the probe excites population to higher electronic states that can lead to fragments PO2C2H7+ and PO2CH4+. The computational results combined with the experimental observations indicate that the two conformers of DMMP that are populated under experimental conditions exhibit different dynamics after being excited to the higher electronic states of the cation leading to different dissociation products. These results highlight the potential usefulness of these pump-probe measurements as a tool to study conformer-specific dynamics in molecules of biological interest.
- Published
- 2022
- Full Text
- View/download PDF
21. Photo-induced Dissociation of the N1-H Bond in the Imino Tautomers of Isocytosine in Water Medium.
- Author
-
Dimitrov, Blagovest H. and Delchev, Vassil B.
- Subjects
- *
TAUTOMERISM , *METHANE hydrates - Abstract
The imino tautomers of isocytosine were objects of investigation at the TD-DFT level of theory - TD BLYP/6-311++G(d,p). We studied the mechanisms of the H1-N detachment in these tautomers through excited-state reaction paths. It was proposed that these transformations occur through the 1ps* excited-state reaction paths of the imino tautomers. The mechanisms involve dissociations of the N1-H bonds in the tautomers and lead to crossings between the reaction paths of 1ps* and S0 electronic states. One can suppose that such processes would facilitate the tautomerizations of the imino tautomers if further mechanisms have been found. [ABSTRACT FROM AUTHOR]
- Published
- 2021
- Full Text
- View/download PDF
22. Competition between collective and individual conical intersection dynamics in an optical cavity
- Author
-
András Csehi, Oriol Vendrell, Gábor J Halász, and Ágnes Vibók
- Subjects
conical intersections ,radiation field ,collective effect ,light-induced nonadiabatic phenomena ,Science ,Physics ,QC1-999 - Abstract
Light-induced nonadiabatic phenomena arise when molecules or molecular ensembles are exposed to resonant external electromagnetic fields. The latter can either be classical laser or quantized cavity radiation fields, which can couple to either the electronic, nuclear or rotational degrees of freedom of the molecule. In the case of quantized radiation fields, the light–matter coupling results in the formation of two new hybrid light–matter states, namely the upper and lower ‘polaritons’. Light-induced avoided crossings and light-induced conical intersections (CIs) between polaritons exist as a function of the vibrational and rotational coordinates of single molecules. For ensembles of N molecules, the N − 1 dark states between the two optically active polaritons feature, additionally, so-called collective CIs, involving the coordinates of more than one molecule to form. Here, we study the competition between intramolecular and collective light-induced nonadiabatic phenomena by comparing the escape rate from the Franck–Condon region of a single molecule and of a molecular ensemble coupled to a cavity mode. In situations where the polaritonic gap would be large and the dark-state decay channels could not be reached effectively, the presence of a seam of light-induced CI between the polaritons facilitates again the participation of the dark manifold, resulting in a cooperative effect that determines the overall non-radiative decay rate from the upper into the lower polaritonic states.
- Published
- 2022
- Full Text
- View/download PDF
23. Non-linear Spectroscopy of Conical Intersections with XUV and X-ray Photons
- Author
-
Jadoun, Deependra and Jadoun, Deependra
- Abstract
Conical intersections (CIs) appear in a molecule due to the breakdown of the Born-Oppenheimer approximation when the energy difference between two or more electronic states decreases. CIs are known to play a crucial role in processes such as photosynthesis and vision in the human eye, and therefore it is important to probe the existence of such entities in molecules. Observing phenomena such as population transfer, electronic coherence generation, and vanishing electronic states separation can help probe a CI in a molecule. However, the accurate observation of the occurrence of CIs is challenging primarily due to the femtosecond time scale of such non-adiabatic processes in molecules. This thesis explores non-linear spectroscopic methods that can help detect the presence of a CI in a molecule. Multiple techniques such as photoelectron spectroscopy, transient absorption, spontaneous emission, and Raman spectroscopy with classical and entangled photons were theoretically investigated. Special emphasis was placed on observing electronic coherence near a CI, as it provides compelling evidence for the presence of a CI in a molecule. The significance of attosecond pulse trains was investigated in time-resolved photoelectron spectroscopy to improve the visibility of electronic coherence and population transfer features. A two-dimensional extension of the Raman technique TRUECARS was developed to generate Raman signals that lack vibrational coherence, thus helping visualize electronic coherences in a molecule. Entangled photons were also employed in Raman spectroscopy to probe CIs with simultaneously high temporal and spectral resolutions, which is unachievable by classical pulses.
- Published
- 2023
24. Photochemistry of Thymine in Protic Polar Nanomeric Droplets Using Electrostatic Embeding TD-DFT/MM
- Author
-
Miquel Huix-Rotllant
- Subjects
electrostatic embedding ,QM/MM ,conical intersections ,nucleobases ,thymine ,Organic chemistry ,QD241-441 - Abstract
Thymine photochemistry is important for understanding DNA photodamage. In the gas phase, thymine undergoes a fast non-radiative decay from S2 to S1. In the S1 state, it gets trapped for several picoseconds until returning to the ground-state S0. Here, we explore the electrostatic effects of nanomeric droplets of methanol and water on the excited states of thymine. For this purpose, we develop and implement an electrostatic embedding TD-DFT/MM method based on a QM/MM coupling defined through electrostatic potential fitting charges. We show that both in methanol and water, the mechanism is similar to the gas phase. The solvent molecules participate in defining the branching plane of S0/S1 intersection and have a negligible effect on the S1/S2 intersection. Despite the wrong topology of the ground/excited state intersections, electrostatic embedding TD-DFT/MM allows for a fast exploration of the potential energy surfaces and a qualitative picture of the photophysics of thymine in solvent droplets.
- Published
- 2021
- Full Text
- View/download PDF
25. STRUCTURAL DYNAMICS OF FREE MOLECULES AND CONDENSED STATE OF MATTER. Part II. TRANSIENT STRUCTURES IN CHEMICAL REACTIONS
- Author
-
A. A. Ischenko, Y. I. Tarasov, and L. Schäfer
- Subjects
transient structures ,chemical reaction dynamics ,conical intersections ,coherent nuclear dynamics ,adiabatic potential energy surface ,time-resolved electron diffraction ,time-resolved x-ray liquidography ,ultrafast spectroscopy ,pump-probe experiments ,Chemistry ,QD1-999 - Abstract
Basic knowledge of mankind so far relates to the description of electrons and atoms in the material in a state of equilibrium, where the behavior changes slowly over time. The electron diffraction with a high temporal and space resolution has opened the possibility of direct observation of the processes occurring in the transient state of the substance (molecular movie). Here it is necessary to provide a temporary resolution of the order of 100 fs, which corresponds to the transition of the system through the energy barrier of the potential surface, which describes the chemical reaction - the process of the breaking and the formation of new bonds between the interacting agents. Thus, the possibility of the investigation of the coherent nuclear dynamics of molecular systems and the condensed matter can be opened. In the past two decades, it has been possible to observe the nuclear motion in the temporal interval corresponding to the period of the nuclear oscillation. The observed coherent changes in the nuclear system at such temporal intervals determine the fundamental shift from the standard kinetics of chemical reactions to the dynamics of the phase trajectory of a single molecule, the molecular quantum state tomography.
- Published
- 2017
- Full Text
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26. Unified Description of Ultrafast Excited State Decay Processes in Epigenetic Deoxycytidine Derivatives
- Author
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Thomas Carell, Giulio Cerullo, Irene Conti, Marco Garavelli, Eveliina Ponkkonen, Piotr Kabacinski, Vishal K. Jaiswal, Marco Romanelli, Kabaciński, Piotr, Romanelli, Marco, Ponkkonen, Eveliina, Jaiswal, Vishal Kumar, Carell, Thoma, Garavelli, Marco, Cerullo, Giulio, and Conti, Irene
- Subjects
Letter ,intersystem crossing ,CASPT2/MM ,transient absorption ,010402 general chemistry ,01 natural sciences ,Deoxycytidine ,Epigenesis, Genetic ,ultrafast spectroscopy ,chemistry.chemical_compound ,Gene expression ,General Materials Science ,Epigenetics ,Physical and Theoretical Chemistry ,conical intersections ,010405 organic chemistry ,DNA ,Internal conversion (chemistry) ,0104 chemical sciences ,Intersystem crossing ,chemistry ,Excited state ,Biophysics ,Nucleic Acid Conformation ,Ground state ,Epigenetic base - Abstract
Epigenetic DNA modifications play a fundamental role in modulating gene expression and regulating cellular and developmental biological processes, thereby forming a second layer of information in DNA. The epigenetic 2′-deoxycytidine modification 5-methyl-2′-deoxycytidine, together with its enzymatic oxidation products (5-hydroxymethyl-2′-deoxycytidine, 5-formyl-2′-deoxycytidine, and 5-carboxyl-2′-deox- ycytidine), are closely related to deactivation and reactivation of DNA transcription. Here, we combine sub-30-fs transient absorption spectroscopy with high-level correlated multiconfigurational CASPT2/MM computational methods, explicitly including the solvent, to obtain a unified picture of the photophysics of deoxycytidine-derived epigenetic DNA nucleosides. We assign all the observed time constants and identify the excited state relaxation pathways, including the competition of intersystem crossing and internal conversion for 5-formyl-2′-deoxycytidine and ballistic decay to the ground state for 5-carboxy-2′-deoxycytidine. Our work contributes to shed light on the role of epigenetic derivatives in DNA photodamage as well as on their possible therapeutic use.
- Published
- 2021
27. Modelling Photoionisation in Isocytosine: Potential Formation of Longer‐Lived Excited State Cations in its Keto Form
- Author
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Segarra‐Martí, Javier, Bearpark, Michael J., and European Commission
- Subjects
Models, Molecular ,CASPT2 ,Ultraviolet Rays ,ADN ,Physics, Atomic, Molecular & Chemical ,RELAXATION DYNAMICS ,CASSCF ,Article ,Cytosine ,MOLECULAR WAVE-FUNCTIONS ,Cations ,IMPLEMENTATION ,0307 Theoretical and Computational Chemistry ,Physical and Theoretical Chemistry ,0306 Physical Chemistry (incl. Structural) ,Radiació ionitzant ,Science & Technology ,Chemical Physics ,Molecular Structure ,Chemistry, Physical ,Conical Intersections ,Physics ,SPECTROSCOPIC FINGERPRINTS ,DNA ,Articles ,Ketones ,Photochemical Processes ,URACIL ,Atomic and Molecular Physics, and Optics ,Chemistry ,Photostability ,2ND-ORDER PERTURBATION-THEORY ,Photoionisation ,Physical Sciences ,ANO BASIS-SETS ,SIMULATION ,0202 Atomic, Molecular, Nuclear, Particle and Plasma Physics ,CASSCF/CASPT2 ,RNA ,ELECTRON CORRELATION ,DNA/RNA - Abstract
Studying the effects of UV and VUV radiation on non‐canonical DNA/RNA nucleobases allows us to compare how they release excess energy following absorption with respect to their canonical counterparts. This has attracted much research attention in recent years because of its likely influence on the origin of our genetic lexicon in prebiotic times. Here we present a CASSCF and XMS‐CASPT2 theoretical study of the photoionisation of non‐canonical pyrimidine nucleobase isocytosine in both its keto and enol tautomeric forms. We analyse their lowest energy cationic excited states including 2π+ , 2nO+ and 2nN+ and compare these to the corresponding electronic states in cytosine. Investigating lower‐energy decay pathways we find – unexpectedly ‐ that keto‐isocytosine+ presents a sizeable energy barrier potentially inhibiting decay to its cationic ground state, whereas enol‐isocytosine+ features a barrierless and consequently ultrafast pathway analogous to the one previously found for the canonical (keto) form of cytosine+. Dynamic electron correlation reduces the energy barrier in the keto form substantially (by ∼1 eV) but it is nevertheless still present. We additionally compute the UV/Vis absorption signals of the structures encountered along these decay channels to provide spectroscopic fingerprints to assist future experiments in monitoring these intricate photo‐processes., The photostability of isocytosine upon ionising radiation exposure is assessed theoretically in both keto and enol tautomeric forms. This non‐canonical base, which features analogous UV excited state reactivity to DNA nucleobase cytosine, unexpectedly displays sizeable energy barriers along the cationic excited state in its keto form that hamper the decay. Simulations suggest isocytosine is less photostable against photoionisation, a factor that might contribute to selecting the more resilient cytosine under prebiotic VUV radiation exposure.
- Published
- 2021
28. Using diketopyrrolopyrroles to stabilize double excitation and control internal conversion
- Author
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Mario Barbatti, Mariana Telles do Casal, Felix Plasser, Josene M. Toldo, Institut de Chimie Radicalaire (ICR), Aix Marseille Université (AMU)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), Loughborough University, Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), and European Project: 828753,Boostcrop
- Subjects
RESONANCE-RAMAN ,Science & Technology ,Luminescence ,Chemistry, Physical ,DERIVATIVES ,Physics ,BETA-CAROTENE ,CHARACTER ,General Physics and Astronomy ,RELAXATION ,CONICAL INTERSECTIONS ,Thiophenes ,Physics, Atomic, Molecular & Chemical ,Ketones ,STATE ,DENSITY-FUNCTIONAL THEORY ,ENERGY ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Chemistry ,DEPENDENCE ,Physical Sciences ,Pyrroles ,Physical and Theoretical Chemistry - Abstract
Diketopyrrolopyrrole (DPP) is a pivotal functional group to tune the physicochemical properties of novel organic photoelectronic materials. Among multiple uses, DPP-thiophene derivatives forming a dimer through a vinyl linker were recently shown to quench the fluorescence observed in their isolated monomers. Here, we explain this fluorescence quenching using computational chemistry. The DPP-thiophene dimer has a low-lying doubly excited state that is not energetically accessible for the monomer. This state delays the fluorescence allowing internal conversion to occur first. We characterize the doubly excited state wavefunction by systematically changing the derivatives to tune the π-scaffold size and the acceptor and donor characters. The origin of this state's stabilization is related to the increase in the π-system and not to the charge-transfer features. This analysis delivers core conceptual information on the electronic properties of organic chromophores arranged symmetrically around a vinyl linker, opening new ways to control the balance between luminescence and internal conversion. ispartof: PHYSICAL CHEMISTRY CHEMICAL PHYSICS vol:24 issue:38 pages:23279-23288 ispartof: location:England status: published
- Published
- 2022
29. Photodynamics of Gas‐Phase Pyruvic Acid Following Light Absorption in the Actinic Region
- Author
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Lewis Hutton and Basile F. E. Curchod
- Subjects
atmospheric chemistry ,conical intersections ,Organic Chemistry ,Physical and Theoretical Chemistry ,computational chemistry ,excited states ,molecular dynamics ,Analytical Chemistry - Abstract
The photochemistry of pyruvic acid has received a large attention due to its relevance to atmospheric chemistry. Pyruvic acid is produced in the troposphere from both biogenic and anthropogenic sources and is a prototypical model for the family of (Formula presented.) -dicarbonyls. What makes the photochemistry of pyruvic acid particularly interesting from a gas-phase perceptive is its expected decarboxylation upon sunlight absorption. The exact photodynamics leading to this release of CO2 remains elusive. In this work, we used a combination of excited- and ground-state ab initio molecular dynamics to unravel the possible mechanisms leading to the decarboxylation of pyruvic acid. Our calculations highlight the importance of a proton-coupled electron transfer mechanism taking place in the first excited electronic state and triggering a nonadiabatic transfer of the molecule to the ground electronic state. The decarboxylation takes place in the ground-electronic state with the concomitant formation of methylhydroxycarbene. We also calculate the photoabsorption cross-section and wavelength-dependent quantum yields for pyruvic acid, highlighting the limits of our theoretical formalism.
- Published
- 2022
30. Multiscale wavelet decomposition of time-resolved X-ray diffraction signals in cyclohexadiene.
- Author
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Al. Osipov, Vladimir, Kowalewski, Markus, and Mukamel, Shaul
- Subjects
- *
WAVELET transforms , *X-ray diffraction , *CYCLOHEXADIENE , *HYDROCARBONS , *IONIZING radiation - Abstract
We demonstrate how the wavelet transform, which is a powerful tool for compression, filtering, and scaling analysis of signals, may be used to separate large- and short-scale electron density features in X-ray diffraction patterns. Wavelets can isolate the electron density associated with delocalized bonds from the much stronger background of highly localized core electrons. The wavelet-processed signals clearly reveal the bond formation and breaking in the early steps of the photoinduced pericyclic ring opening reaction of 1,3-cyclohexadiene, which are not resolved in the bare signal. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
31. Triplet-triplet Annihilation Dynamics of Naphthalene
- Author
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Gudem, Mahesh, Kowalewski, Markus, Gudem, Mahesh, and Kowalewski, Markus
- Abstract
Triplet-triplet annihilation (TTA) is a spin-allowed conversion of two triplet states into one singlet excited state, which provides an efficient route to generate a photon of higher frequency than the incident light. Multiple energy transfer steps between absorbing (sensitizer) and emitting (annihilator) molecular species are involved in the TTA based photon upconversion process. TTA compounds have recently been studied for solar energy applications, even though the maximum upconversion efficiency of 50 % is yet to be achieved. With the aid of quantum calculations and based on a few key requirements, several design principles have been established to develop the well-functioning annihilators. However, a complete molecular level understanding of triplet fusion dynamics is still missing. In this work, we have employed multi-reference electronic structure methods along with quantum dynamics to obtain a detailed and fundamental understanding of TTA mechanism in naphthalene. Our results suggest that the TTA process in naphthalene is mediated by conical intersections. In addition, we have explored the triplet fusion dynamics under the influence of strong light-matter coupling and found an increase of the TTA based upconversion efficiency.
- Published
- 2022
- Full Text
- View/download PDF
32. Towards developing novel and sustainable molecular light-to-heat converters
- Author
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Jimmy Alarcan, Mariana T. do Casal, Matthew A. P. Turner, Michael N. R. Ashfold, Florent Allais, Daniel J. L. Coxon, Matthieu M. Mention, Mario Barbatti, Wybren Jan Buma, Temitope T. Abiola, Benjamin Rioux, Josene M. Toldo, Jack Matthew Woolley, Albert Braeuning, Vasilios G. Stavros, Cédric Peyrot, University of Warwick [Coventry], Agro-Biotechnologies Industrielles (ABI), AgroParisTech, Institut de Chimie Radicalaire (ICR), Aix Marseille Université (AMU)-Institut de Chimie du CNRS (INC)-Centre National de la Recherche Scientifique (CNRS), German Federal Institute for Risk Assessment [Berlin] (BfR), University of Amsterdam [Amsterdam] (UvA), Radboud university [Nijmegen], University of Bristol [Bristol], Institut Universitaire de France (IUF), Ministère de l'Education nationale, de l’Enseignement supérieur et de la Recherche (M.E.N.E.S.R.), Radboud University [Nijmegen], and ANR-17-CE07-0046,SINAPUV,(Bio)synthèse et étude des propriétés physico-chimiques et biologiques d'analogues du malate de sinapoyl: de nouvelles molécules anti-UV non-toxiques et biosourcées pour l'industrie cosmétique(2017)
- Subjects
Materials science ,Chemistry, Multidisciplinary ,EFFICIENT ,02 engineering and technology ,010402 general chemistry ,medicine.disease_cause ,7. Clean energy ,01 natural sciences ,DENSITY-FUNCTIONAL THEORY ,CONDENSATION ,medicine ,NANOPARTICLES ,ABSORPTION ,FROST DAMAGE ,[CHIM]Chemical Sciences ,QD ,FELIX Condensed Matter Physics ,ACID-DERIVATIVES ,Science & Technology ,[CHIM.ORGA]Chemical Sciences/Organic chemistry ,QK ,General Chemistry ,CONICAL INTERSECTIONS ,021001 nanoscience & nanotechnology ,Internal conversion (chemistry) ,Engineering physics ,0104 chemical sciences ,EXCITED-STATE DYNAMICS ,Photoexcitation ,[CHIM.THEO]Chemical Sciences/Theoretical and/or physical chemistry ,Chemistry ,13. Climate action ,Picosecond ,Excited state ,Femtosecond ,Physical Sciences ,Transient (oscillation) ,0210 nano-technology ,Ground state ,Ultraviolet ,GENERATION - Abstract
Light-to-heat conversion materials generate great interest due to their widespread applications, notable exemplars being solar energy harvesting and photoprotection. Another more recently identified potential application for such materials is in molecular heaters for agriculture, whose function is to protect crops from extreme cold weather and extend both the growing season and the geographic areas capable of supporting growth, all of which could help reduce food security challenges. To address this demand, a new series of phenolic-based barbituric absorbers of ultraviolet (UV) radiation has been designed and synthesised in a sustainable manner. The photophysics of these molecules has been studied in solution using femtosecond transient electronic and vibrational absorption spectroscopies, allied with computational simulations and their potential toxicity assessed by in silico studies. Following photoexcitation to the lowest singlet excited state, these barbituric absorbers repopulate the electronic ground state with high fidelity on an ultrafast time scale (within a few picoseconds). The energy relaxation pathway includes a twisted intramolecular charge-transfer state as the system evolves out of the Franck–Condon region, internal conversion to the ground electronic state, and subsequent vibrational cooling. These barbituric absorbers display promising light-to-heat conversion capabilities, are predicted to be non-toxic, and demand further study within neighbouring application-based fields., The synthesis and photophysical properties of phenolic barbiturics are reported. These molecules convert absorbed ultraviolet light to heat with high fidelity and may be suitable for inclusion in foliar sprays to boost crop protection and production.
- Published
- 2021
33. Non-Born–Oppenheimer effects in molecular photochemistry: an experimental perspective
- Author
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Michael N. R. Ashfold and Sang Kyu Kim
- Subjects
photochemistry ,conical intersections ,Photochemistry ,Ultraviolet Rays ,General Mathematics ,General Engineering ,General Physics and Astronomy ,non-radiative decay ,Born–Oppenheimer approximation ,excited states - Abstract
Non-adiabatic couplings between Born–Oppenheimer (BO)-derived potential energy surfaces are now recognized as pivotal in describing the non-radiative decay of electronically excited molecules following photon absorption. This opinion piece illustrates how non-BO effects provide photostability to many biomolecules when exposed to ultraviolet radiation, yet in many other cases are key to facilitating ‘reactive’ outcomes like isomerization and bond fission. The examples are presented in order of decreasing molecular complexity, spanning studies of organic sunscreen molecules in solution, through two families of heteroatom containing aromatic molecules and culminating with studies of isolated gas phase H 2 O molecules that afford some of the most detailed insights yet available into the cascade of non-adiabatic couplings that enable the evolution from photoexcited molecule to eventual products. This article is part of the theme issue 'Chemistry without the Born–Oppenheimer approximation'.
- Published
- 2022
34. Molecular Photofragmentation Dynamics in the Gas and Condensed Phases.
- Author
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Ashfold, Michael N. R., Murdock, Daniel, and Oliver, Thomas A. A.
- Abstract
Exciting a molecule with an ultraviolet photon often leads to bond fission, but the final outcome of the bond cleavage is typically both molecule tnd phase dependent. The photodissociation of an isolated gas-phase molecule can be viewed as a closed system: Energy and momentum are conserved, and the fragmentation is irreversible. The same is not true in a solutionphase photodissociation process. Solvent interactions may dissipate some of the photoexcitation energy prior to bond fission and will dissipate any excess energy partitioned into the dissociation products. Products that have no analog in the corresponding gas-phase study may arise by, for example, geminate recombination. Here, we illustrate the extent to which dynamical insights from gas-phase studies can inform our understanding of the corresponding solution-phase photochemistry and how. in the specific case of photoinduced ring-opening reactions, solution-phase studies can in some cases reveal dynamical insights more clearly than die corresponding gas-phase study. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
35. Role of Electron-Driven Proton-Transfer Processes in the Ultrafast Deactivation of Photoexcited Anionic 8-oxoGuanine-Adenine and 8-oxoGuanine-Cytosine Base Pairs.
- Author
-
Xiuxiu Wu, Karsili, Tolga N. V., and Domcke, Wolfgang
- Abstract
It has been reported that 8-oxo-7,8-dihydro-guanosine (8-oxo-G), which is the main product of oxidative damage of DNA, can repair cyclobutane pyrimidine dimer (CPD) lesions when incorporated into DNA or RNA strands in proximity to such lesions. It has therefore been suggested that the 8-oxo-G nucleoside may have been a primordial precursor of present-day flavins in DNA or RNA repair. Because the electron transfer leading to the splitting of a thymine-thymine pair in a CPD lesion occurs in the photoexcited state, a reasonably long excited-state lifetime of 8-oxo-G is required. The neutral (protonated) form of 8-oxo-G exhibits a very short (sub-picosecond) intrinsic excited-state lifetime which is unfavorable for repair. It has therefore been argued that the anionic (deprotonated) form of 8-oxo-G, which exhibits a much longer excited-state lifetime, is more likely to be a suitable cofactor for DNA repair. Herein, we have investigated the exited-state quenching mechanisms in the hydrogen-bonded complexes of deprotonated 8-oxo-G− with adenine (A) and cytosine (C) using ab initio wave-function-based electronic-structure calculations. The calculated reaction paths and potential-energy profiles reveal the existence of barrierless electron-driven inter-base proton-transfer reactions which lead to low-lying S1/S0 conical intersections. The latter can promote ultrafast excited-state deactivation of the anionic base pairs. While the isolated deprotonated 8-oxo-G− nucleoside may have been an efficient primordial repair cofactor, the excited states of the 8-oxo-G−-A and 8-oxo-G−-C base pairs are likely too short-lived to be efficient electron-transfer repair agents. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
36. Unraveling the T[formula omitted] formation in mono-arm styrylbenzene heteroanalogues.
- Author
-
M.J., Chithra and Vennapusa, Sivaranjana Reddy
- Subjects
- *
SPIN-orbit interactions , *BAND gaps , *ENERGY transfer , *PHOTOEXCITATION - Abstract
We present a theoretical investigation of the nonradiative relaxation dynamics associated with the low-lying excited electronic states of mono-arm styrylbenzene heteroanalogues. These molecules possess near-degenerate S 1 (bright π π ∗ ) and S 2 (dark n π ∗ ) states, enabling intersystem crossing via both states upon photoexcitation to S 1. Singlet-triplet energy gaps and associated spin-orbit coupling parameters suggest favorable intersystem crossing via S 2 → T 5. The nuclear wavepacket initiated at the Franck-Condon point of the receiver triplet state (T 5) decays rapidly to lower triplet states via accessible multiple conical intersections, indicating the ultrafast formation of T 1 in these molecules. Our findings show that these molecules would transfer energy to molecular oxygen via T 1. • T 1 formation pathways of mono-arm styrylbenzene heteroanalogues are investigated. • TD-DFT calculations and SOC values reveal S 2 -T 5 as the triplet generating channel. • Conical intersections in the triplet manifold lead to ultrafast internal conversion. [ABSTRACT FROM AUTHOR]
- Published
- 2023
- Full Text
- View/download PDF
37. Excited-state deactivation of 5-vinyluracil: Effects of π-π conjugation and intramolecular hydrogen bond C[sbnd]H⋯O[dbnd]C.
- Author
-
Liu, Yan and Yang, Songqiu
- Subjects
- *
URACIL , *SUBSTITUENTS (Chemistry) , *EXCITED states , *HYDROGEN bonding , *INTRAMOLECULAR forces , *FLUORESCENCE spectroscopy - Abstract
The excited-state decay mechanisms of 5-vinyluracil (5VU) are explored by using a combination of experimental and theoretical methods. The effects of vinyl substitutent, including the π-π conjugation effect and intramolecular hydrogen bond, are discussed. 5VU comprises the conformers 5VUA and 5VUB at ground state, with and without an intramolecular hydrogen bond C H⋯O C, respectively. The steady-state absorption and fluorescence spectra of 5VU are significantly red-shifted with respect to that of uracil. The time-resolved experimental results show that the excited-state decays of 5VU can be described by using three time constants: 2.26 ps, 13.45 ps and 4.66 ns. The decay pathways of 5VU obtained with the linearly interpolated internal coordinate method, predict that the two shorter lifetimes of 2.26 ps and 13.45 ps are attributed to 5VUB, and that the longest lifetime of 4.66 ns is attributed to 5VUA. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
38. Gas-Phase Femtosecond Particle Spectroscopy: A Bottom-Up Approach to Nucleotide Dynamics.
- Author
-
Stavros, Vasilios G. and Verlet, Jan R.R.
- Subjects
- *
GAS phase reactions , *ULTRAVIOLET radiation , *BASE pairs , *DNA , *AQUEOUS solutions - Abstract
We summarize how gas-phase ultrafast charged-particle spectroscopy has been used to provide an understanding of the photophysics of DNA building blocks. We focus on adenine and discuss how, following UV excitation, specific interactions determine the fates of its excited states. The dynamics can be probed using a systematic bottom-up approach that provides control over these interactions and that allows ever-larger complexes to be studied. Starting from a chromophore in adenine, the excited state decay mechanisms of adenine and chemically substituted or clustered adenine are considered and then extended to adenosine mono-, di-, and trinucleotides. We show that the gas-phase approach can offer exquisite insight into the dynamics observed in aqueous solution, but we also highlight stark differences. An outlook is provided that discusses some of the most promising developments in this bottom-up approach. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
39. Comparative study of radiationless deactivation mechanisms in cytosine and 2,4-diaminopyrimidine.
- Author
-
Kancheva, Pavlina, Tuna, Deniz, and Delchev, Vassil B.
- Subjects
- *
RADIATIONLESS deactivation , *CYTOSINE , *COMPUTATIONAL chemistry , *QUANTUM perturbations , *ULTRAVIOLET radiation , *TAUTOMERISM , *ACETONITRILE , *COMPARATIVE studies - Abstract
We present a comparative computational CASPT2 and CC2 study of the deactivation mechanisms of electronically excited cytosine (Cyt) and 2,4-diaminopyrimidine (DAPy). A number of S 1 / S 0 conical intersections exhibiting N H bond elongation were optimized. These conical intersections are accessible from the Franck–Condon region along 1 πσ* excited-state reaction paths. We also focus on the phototautomerism of DAPy and propose the photoinduced dissociation-association (PIDA) mechanism for this process. Supplementary experimental results on the UV irradiation of DAPy in acetonitrile solution show tautomerization to imino tautomers. By analyzing differences in the photophysics of the nucleobase Cyt and its analogue DAPy, this study provides new insight into the varying degrees of photostability between nucleobases and their close analogues. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
40. Population of triplet states in acetophenone: A quantum dynamics perspective.
- Author
-
Huix-Rotllant, Miquel, Burghardt, Irene, and Ferré, Nicolas
- Subjects
- *
ACETOPHENONE , *AROMATIC compounds , *QUANTUM theory , *PHOTOCHEMISTRY , *ELECTRONIC structure , *MOLECULAR dynamics - Abstract
When initially excited to its first singlet excited state, acetophenone, a prototypical aromatic ketone, is characterized by a singlet to triplet conversion quantum yield close to 100%. In this work, the time evolution of photo-excited acetophenone is theoretically investigated using quantum dynamics simulations based on the Multi Configuration Time Dependent Hartree (MCTDH) method. A model Hamiltonian, comprising both electronic and vibronic terms, is defined and its parameters are fitted to available data obtained by high-level quantum chemical calculations. An exploratory MCTDH dynamics shows a sequential mechanism S 1 →T 2 →T 1 . The population in the triplet manifold is distributed evenly among the two states, explaining the origin of acetophenone rich photochemistry. Initialement excité vers son premier état excité singulet, l’acétophénone, une cétone aromatique typique, est caractérisée par une conversion singulet vers triplet proche de 100%. Dans ce travail, l’évolution temporelle de l’acétophénone photo-excitée est étudiée de fa,on théorique par dynamique quantique basée sur la méthode Multi Configuration Time Dependent Hartree (MCTDH). Un Hamiltonien modèle, comprenant des termes électroniques et vibroniques, est défini et ses paramètres sont déterminés à partir de données obtenues par des calculs de chimie quantique de haut niveau. La dynamique MCTDH exploratoire montre un mécanisme séquentiel S 1 →T 2 →T 1 . La population est distribuée également dans les deux états triplet, expliquant l’origine de la photochimie riche de l’acétophénone. [ABSTRACT FROM AUTHOR]
- Published
- 2016
- Full Text
- View/download PDF
41. Conical Intersections and Avoided Crossings of Electronic Energy Levels
- Author
-
Gamble, Stephanie Nicole and Gamble, Stephanie Nicole
- Abstract
We study the unique phenomena which occur in certain systems characterized by the crossing or avoided crossing of two electronic eigenvalues. First, an example problem will be investigated for a given Hamiltonian resulting in a codimension 1 crossing by implementing results by Hagedorn from 1994. Then we perturb the Hamiltonian to study the system for the corresponding avoided crossing by implementing results by Hagedorn and Joye from 1998. The results from these demonstrate the behavior which occurs at a codimension 1 crossing and avoided crossing and illustrates the differences. These solutions may also be used in further studies with Herman-Kluk propagation and more. Secondly, we study codimension 2 crossings by considering a more general type of wave packet. We focus on the case of Schrödinger equation but our methods are general enough to be adapted to other systems with the geometric conditions therein. The motivation comes from the construction of surface hopping algorithms giving an approximation of the solution of a system of Schrödinger equations coupled by a potential admitting a conical intersection, in the spirit of Herman-Kluk approximation (in close relation with frozen/thawed approximations). Our main Theorem gives explicit transition formulas for the profiles when passing through a conical crossing point, including precise computation of the transformation of the phase and its proof is based on a normal form approach.
- Published
- 2021
42. Non-adiabatic dynamics close to conical intersections and the surface hopping perspective
- Author
-
João Pedro eMalhado, Michael John Bearpark, and James T Hynes
- Subjects
decoherence ,landau-Zener ,non-adiabatic dynamics ,conical intersections ,surface hopping ,Chemistry ,QD1-999 - Abstract
Conical intersections play a major role in the current understanding of electronic de-excitation in polyatomic molecules, and thus in the description of photochemistry and photo physics of molecular systems. This article reviews aspects of the basic theory underlying the description of non-adiabatic transitions at conical intersections, with particular emphasis on the important case when the dynamics of the nuclei are treated classically. Within this classical nuclear motion framework, the main aspects of the surface hopping methodology in the conical intersection context are presented. The emerging picture from this treatment is that of electronic transitions around conical intersections dominated by the interplay of the nuclear velocity and the derivative non-adiabatic coupling vector field.
- Published
- 2014
- Full Text
- View/download PDF
43. Editorial: Vibrationally-Mediated Chemical Dynamics
- Author
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Michael Staniforth, Doran I. G. Bennett, Margherita Maiuri, and Jacob C. Dean
- Subjects
spectroscopy ,conical intersections ,Chemistry ,General Chemistry ,isomerization ,Chemical Dynamics ,Vibronic coupling ,Chemical physics ,Density functional theory ,Spectroscopy ,vibronic coupling ,Isomerization ,QD1-999 ,density functional theory - Published
- 2021
44. Editorial: Vibrationally-Mediated Chemical Dynamics
- Author
-
Dean, Jacob C., Bennett, Doran I. G., Staniforth, Michael, and Maiuri, Margherita
- Subjects
Chemistry ,spectroscopy ,Editorial ,conical intersections ,vibronic coupling ,density functional theory ,isomerization - Published
- 2021
45. On the electronic structure of the ground state of cyclopentoxy. The case for a two coupled state description.
- Author
-
Malbon, Christopher L., Yarkony, David R., and Zhu, Xiaolei
- Subjects
- *
ELECTRONIC structure , *GROUND state energy , *RADICALS (Chemistry) , *OXYGEN , *PHOTOELECTRON spectroscopy - Abstract
Previous descriptions of the cyclopentoxy radical have considered the ground state as an isolated electronic state; however, the doublet ground and first excited states of the cyclopentoxy radical arise from three electrons in the oxygen 2pπ orbitals, yielding states that may not be adequately described by a single state model. In this work, a prelude to the determination of the photoelectron spectrum of cyclopentoxide, the electronic structure of the ground and first excited state of cyclopentoxy is studied. Both axial and equatorial structures are considered. The ground state is found to have an axial configuration. Conical intersections of the ground and excited state potential energy surfaces in both axial and equatorial nuclear configurations are found, with the minimum energy axial (equatorial) conical intersection lying within ∼515 (260) cm −1 of the axial (equatorial) ground state minimum. The barriers to axial–equatorial interconversion and to ring opening are estimated. The implications for the simulation of the cyclopentoxide photoelectron spectrum are discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
46. On the FCNS ⇆ FC(NS) reaction: A matrix isolation and theoretical study.
- Author
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Tajti, Attila, Mück, Leonie Anna, Farkas, Ádám László, Krebsz, Melinda, Pasinszki, Tibor, Tarczay, György, and Szalay, Péter G.
- Subjects
- *
PHOTOISOMERIZATION , *ELECTRONIC excitation , *FRAGMENTATION reactions , *ULTRAVIOLET spectroscopy , *MOLECULAR switches - Abstract
The FCNS ⇆ FC(NS) photoisomerization process is a simple model system for molecular switches. Here, we examined the switching processes by experimental and theoretical methods. Prior matrix-isolation IR spectroscopic studies were complemented by matrix-isolation UV spectroscopic measurements to assist the interpretation of the mechanism of the ring closure and opening processes and to verify the accuracy of the computations on the vertical excitation energies. Vertical excitation energies were computed by the EOMEE-CCSD, MCSCF, and MR-CISD methods. Conical intersections were also searched for and three conical intersections along the reaction path FCNS → FC(NS) were located, one conical intersection between the 2A′ and 1A″ state, one between the 1A″ and 1A′ state and one where all three states intersect. The ring opening and closing processes were simulated by non-adiabatic dynamics propagation with the trajectory surface hopping method. The combined computational and experimental results suggest that upon 365 nm irradiation the ring closure FCNS → FC(NS) occurs under participation of all three conical intersections, while 254 nm irradiation causes ring opening FC(NS) → FCNS. Both processes, especially the ring opening, are accompanied by fragmentation into FCN+S. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
47. Computational Exploration of the Photoprotective Potential of Gadusol.
- Author
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Losantos, Raúl, Churio, M. Sandra, and Sampedro, Diego
- Subjects
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ULTRAVIOLET spectra , *RADIATION absorption , *ABSORPTION spectra , *LIGHT absorption , *ENOLATES , *PHYSIOLOGICAL effects of ultraviolet radiation , *AQUATIC organisms - Abstract
Gadusol shows one of the simplest structures among a series of natural UV-absorbing compounds that have been related to the photoprotective and antioxidant functions in aquatic organisms. CASPT2//CASSCF methodology was used to carry out a theoretical study on this basic structure in order to describe the underlying features responsible for the photoprotective capacity of the molecule. The influence of the enol-enolate equilibrium on the photophysical properties was explored. The results confirm that both forms undergo a rapid deactivation, which very efficiently dissipates light energy as heat. This work highlights the potential of molecular-level studies to provide an understanding of natural photoprotective mechanisms and gives support to the future design of structurally related new synthetic sunscreens. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
48. A Unified Experimental/Theoretical Description of the Ultrafast Photophysics of Single and Double Thionated Uracils
- Author
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Teles-Ferreira, Danielle Cristina, Conti, Irene, Borrego-Varillas, Rocío, Nenov, Artur, Van Stokkum, Ivo H.M., Ganzer, Lucia, Manzoni, Cristian, de Paula, Ana Maria, Cerullo, Giulio, Garavelli, Marco, Teles-Ferreira, Danielle Cristina, Conti, Irene, Borrego-Varillas, Rocío, Nenov, Artur, Van Stokkum, Ivo H.M., Ganzer, Lucia, Manzoni, Cristian, de Paula, Ana Maria, Cerullo, Giulio, and Garavelli, Marco
- Abstract
Photoinduced processes in thiouracil derivatives have lately attracted considerable attention due to their suitability for innovative biological and pharmacological applications. Here, sub-20 fs broadband transient absorption spectroscopy in the near-UV are combined with CASPT2/MM decay path calculations to unravel the excited-state decay channels of water solvated 2-thio and 2,4-dithiouracil. These molecules feature linear absorption spectra with overlapping ππ* bands, leading to parallel decay routes which we systematically track for the first time. The results reveal that different processes lead to the triplet states population, both directly from the ππ* absorbing state and via the intermediate nπ* dark state. Moreover, the 2,4-dithiouracil decay pathways is shown to be strongly correlated either to those of 2- or 4-thiouracil, depending on the sulfur atom on which the electronic transition localizes.
- Published
- 2020
- Full Text
- View/download PDF
49. Conical Intersections in Physics : An Introduction to Synthetic Gauge Theories
- Author
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Larson, Jonas, Sjöqvist, Erik, Öhberg, Patrik, Larson, Jonas, Sjöqvist, Erik, and Öhberg, Patrik
- Abstract
Conical intersections are to be found in a range of different physical systems, and it seems that the importance of them has often been analysed independently in the different communities. Thus,the physics of conical intersections can be regarded as yet another example for where the wheel has been reinvented. Even if the concept of conical intersections as such is the same in the different communities, there are still differences between conical intersections in say molecular and in condensed matter physics. In this monograph we gather and discuss various systems where conical intersections have played an important role. The similarities and differences are highlighted, as well as drawing attention to the origin of the physics.
- Published
- 2020
50. Topologie dépendante du temps de la densité électronique moléculaire : une approche théorique
- Author
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Breuil, Gabriel and STAR, ABES
- Subjects
Dynamique quantique ,Intersections coniques ,Conical intersections ,[CHIM.OTHE] Chemical Sciences/Other ,Quantum dynamic ,Photo-Excitation - Abstract
Phenylene-ethynylene dendrimers show astonishing properties and are systems to be likely used in opto-electronic devices such as light emitting diodes and conductive molecular wires. They are in the spotlight because they show excellent photostability and high excitation energy transfer efficiency. The excitation energy transfer in phenylene-ethynylene dendrimers is ultrafast and unidirectional. It occurs from the periphery of the molecular system to the core thanks to an excitation energy gradient that extends along the system.During this PhD, phenylene-ethynylene dendrimers have been studied through a pseudofragmentation scheme in which the phenylene-ethynylene dendrimers is decomposed in various subsystems (pseudofragments). The phenylene-ethynylene dendrimers behaves as if the pseudofragments (oligophenylene-ethynylene) were weakly interacting together.Two isomers (the single-trans isomer and the cumulenic isomer) of oligophenylene-ethynylene co-exist in their first adiabatic electronic excited states.Two diabatic excited states are then considered for each oligophenylene-ethynylene, the ones which are associated to the Lewis structures of the isomers. The potential energy surfaces of phenylene-ethynylene dendrimers and their conical intersections have been rationalised in terms of diabatic states localised on the pseudoframgments.I have used density-based descriptors that are built from the attachment and detachment densities involved in the electronic transitions. Such descriptors are used to characterise the electronic excited states that are involved in the pseudofragmentation scheme of phenylene-ethynylene dendrimers .This global strategy allowed us to suggest an alternative excitation energy transfer mechanism that involves both trans-bending and cumulenic-streching deformations on each of the pseudofragments of a phenylene-ethynylene dendrimers ., Les dendrimères de phénylène-ethynylène possèdent des propriétés photo-induites remarquables et ils peuvent être utilisés en tant que composants opto-électroniques tels que les diodes électro-luminescentes et les fils conducteurs moléculaires. Les dendrimères de phénylène-ethynylène présentent une photo-stabilité importante et un transfert d'énergie d'excitation ultra-rapide et unidirectionnel. Il va de la périphérie du système moléculaire vers son centre grâce à un gradient d'énergie d'excitation qui s'étend le long du système.Durant cette thèse, les dendrimères de phénylène-ethynylène ont été étudiés à l'aide d'un schéma de pseudo-fragmentation dans lequel les dendrimères de phénylène-ethynylène sont décomposés en différents sous-systèmes (pseudofragments). Les dendrimères de phénylène-ethynylène se comportent comme si les pseudofragments (oligophénylène-éthynylènes) étaient en faible interaction.Deux isomères (le simple-trans et le cumulénique) des oligophénylène-éthynylènes co-existent dans leur premier état adiabatique électronique excité.Deux états diabatiques excités sont alors considérés pour chaque oligophénylène-éthynylènes, ceux qui sont associés à la structure de Lewis des isomères. Les surfaces d'énergie potentielle des dendrimères de phénylène-ethynylène et leur intersections coniques ont été rationalisées à l'aide des états diabatiques localisés sur les pseudofragments.J'ai utilisé des descripteurs basés sur la densité électronique qui sont construits depuis la densité d'attachement et de détachment impliqués dans les transitions électroniques. Ces descripteurs sont utilisés pour caractériser les états électroniques excités qui sont impliqués dans le schéma de pseudofragmentation des dendrimères de phénylène-ethynylène .Cette stratégie globale nous a permis de suggérer un mécanisme alternatif du transfert d'énergie d'excitation qui implique à la fois une déformation par un pliage trans et par un étirement cumulénique sur chacun des pseudofragments d'un dendrimères de phénylène-ethynylène .
- Published
- 2021
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