14 results on '"Xi, Haibin"'
Search Results
2. Regenerating human skeletal muscle forms an emerging niche in vivo to support PAX7 cells
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Hicks, Michael R, Saleh, Kholoud K, Clock, Ben, Gibbs, Devin E, Yang, Mandee, Younesi, Shahab, Gane, Lily, Gutierrez-Garcia, Victor, Xi, Haibin, and Pyle, April D
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Biochemistry and Cell Biology ,Biological Sciences ,Genetics ,Stem Cell Research ,Stem Cell Research - Nonembryonic - Human ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Regenerative Medicine ,Stem Cell Research - Nonembryonic - Non-Human ,Stem Cell Research - Embryonic - Human ,Stem Cell Research - Induced Pluripotent Stem Cell ,2.1 Biological and endogenous factors ,Musculoskeletal ,Animals ,Humans ,Mice ,Muscle ,Skeletal ,PAX7 Transcription Factor ,Pluripotent Stem Cells ,Satellite Cells ,Skeletal Muscle ,Regeneration ,Medical and Health Sciences ,Developmental Biology ,Biochemistry and cell biology - Abstract
Skeletal muscle stem and progenitor cells including those derived from human pluripotent stem cells (hPSCs) offer an avenue towards personalized therapies and readily fuse to form human-mouse myofibres in vivo. However, skeletal muscle progenitor cells (SMPCs) inefficiently colonize chimeric stem cell niches and instead associate with human myofibres resembling foetal niches. We hypothesized competition with mouse satellite cells (SCs) prevented SMPC engraftment into the SC niche and thus generated an SC ablation mouse compatible with human engraftment. Single-nucleus RNA sequencing of SC-ablated mice identified the absence of a transient myofibre subtype during regeneration expressing Actc1. Similarly, ACTC1+ human myofibres supporting PAX7+ SMPCs increased in SC-ablated mice, and after re-injury we found SMPCs could now repopulate into chimeric niches. To demonstrate ACTC1+ myofibres are essential to supporting PAX7 SMPCs, we generated caspase-inducible ACTC1 depletion human pluripotent stem cells, and upon SMPC engraftment we found a 90% reduction in ACTC1+ myofibres and a 100-fold decrease in PAX7 cell numbers compared with non-induced controls. We used spatial RNA sequencing to identify key factors driving emerging human niche formation between ACTC1+ myofibres and PAX7+ SMPCs in vivo. This revealed that transient regenerating human myofibres are essential for emerging niche formation in vivo to support PAX7 SMPCs.
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- 2023
3. Single cell sequencing maps skeletal muscle cellular diversity as disease severity increases in dystrophic mouse models.
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Saleh, Kholoud, Xi, Haibin, Switzler, Corey, Skuratovsky, Emily, Romero, Matthew, Chien, Peggie, Gibbs, Devin, Gane, Lily, Hicks, Michael, Spencer, Melissa, and Pyle, April
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Animal physiology ,Biological sciences ,Cellular physiology ,Natural sciences ,Omics ,Physiology ,Transcriptomics - Abstract
Duchenne muscular dystrophy (DMD) is caused by out-of-frame mutations in the DMD gene resulting in the absence of a functional dystrophin protein, leading to a devastating and progressive lethal muscle-wasting disease. Little is known about cellular heterogeneity as disease severity increases. Advances in single-cell RNA sequencing (scRNA-seq) enabled us to explore skeletal muscle-resident cell populations in healthy, dystrophic, and severely dystrophic mouse models. We found increased frequencies of activated fibroblasts, fibro-adipogenic progenitor cells, and pro-inflammatory macrophages in dystrophic gastrocnemius muscles and an upregulation of extracellular matrix genes on endothelial cells in dystrophic and severely dystrophic muscles. We observed a pronounced risk of clotting, especially in the severely dystrophic mice with increased expression of plasminogen activator inhibitor-1 in endothelial cells, indicating endothelial cell impairment as disease severity increases. This work extends our understanding of the severe nature of DMD which should be considered when developing single or combinatorial approaches for DMD.
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- 2022
4. Single-cell analysis and functional characterization uncover the stem cell hierarchies and developmental origins of rhabdomyosarcoma.
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Wei, Yun, Qin, Qian, Yan, Chuan, Hayes, Madeline, Garcia, Sara, Xi, Haibin, Do, Daniel, Jin, Alexander, Eng, Tiffany, McCarthy, Karin, Adhikari, Abhinav, Onozato, Maristela, Spentzos, Dimitrios, Neilsen, Gunnlaugur, Iafrate, A, Wexler, Leonard, Suvà, Mario, Dela Cruz, Filemon, Pinello, Luca, Langenau, David, and Pyle, April
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Child ,Humans ,Muscle ,Skeletal ,Rhabdomyosarcoma ,Rhabdomyosarcoma ,Embryonal ,Single-Cell Analysis ,Stem Cells - Abstract
Rhabdomyosarcoma (RMS) is a common childhood cancer that shares features with developing skeletal muscle. Yet, the conservation of cellular hierarchy with human muscle development and the identification of molecularly defined tumor-propagating cells has not been reported. Using single-cell RNA-sequencing, DNA-barcode cell fate mapping and functional stem cell assays, we uncovered shared tumor cell hierarchies in RMS and human muscle development. We also identified common developmental stages at which tumor cells become arrested. Fusion-negative RMS cells resemble early myogenic cells found in embryonic and fetal development, while fusion-positive RMS cells express a highly specific gene program found in muscle cells transiting from embryonic to fetal development at 7-7.75 weeks of age. Fusion-positive RMS cells also have neural pathway-enriched states, suggesting less-rigid adherence to muscle-lineage hierarchies. Finally, we identified a molecularly defined tumor-propagating subpopulation in fusion-negative RMS that shares remarkable similarity to bi-potent, muscle mesenchyme progenitors that can make both muscle and osteogenic cells.
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- 2022
5. Recapitulating human myogenesis ex vivo using human pluripotent stem cells
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Chien, Peggie, Xi, Haibin, and Pyle, April D
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Biochemistry and Cell Biology ,Biological Sciences ,Stem Cell Research - Nonembryonic - Non-Human ,Stem Cell Research ,Brain Disorders ,Transplantation ,Regenerative Medicine ,Stem Cell Research - Embryonic - Human ,Intellectual and Developmental Disabilities (IDD) ,Stem Cell Research - Nonembryonic - Human ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Stem Cell Research - Induced Pluripotent Stem Cell ,Underpinning research ,5.2 Cellular and gene therapies ,1.1 Normal biological development and functioning ,Development of treatments and therapeutic interventions ,Musculoskeletal ,Cell Differentiation ,Humans ,Models ,Biological ,Muscle Development ,Muscle ,Skeletal ,Myoblasts ,Skeletal ,PAX7 Transcription Factor ,Pluripotent Stem Cells ,Satellite Cells ,Skeletal Muscle ,human myogenesis ,human pluripotent stem cells ,muscle stem and progenitor cells ,development ,cell differentiation ,Clinical Sciences ,Biochemistry & Molecular Biology ,Biochemistry and cell biology - Abstract
Human pluripotent stem cells (hPSCs) provide a human model for developmental myogenesis, disease modeling and development of therapeutics. Differentiation of hPSCs into muscle stem cells has the potential to provide a cell-based therapy for many skeletal muscle wasting diseases. This review describes the current state of hPSCs towards recapitulating human myogenesis ex vivo, considerations of stem cell and progenitor cell state as well as function for future use of hPSC-derived muscle cells in regenerative medicine.
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- 2022
6. Symmetry breaking of tissue mechanics in wound induced hair follicle regeneration of laboratory and spiny mice
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Harn, Hans I-Chen, Wang, Sheng-Pei, Lai, Yung-Chih, Van Handel, Ben, Liang, Ya-Chen, Tsai, Stephanie, Schiessl, Ina Maria, Sarkar, Arijita, Xi, Haibin, Hughes, Michael, Kaemmer, Stefan, Tang, Ming-Jer, Peti-Peterdi, Janos, Pyle, April D, Woolley, Thomas E, Evseenko, Denis, Jiang, Ting-Xin, and Chuong, Cheng-Ming
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Engineering ,Biomedical Engineering ,Regenerative Medicine ,Bioengineering ,2.1 Biological and endogenous factors ,1.1 Normal biological development and functioning ,Animals ,Epidermis ,Gene Expression Profiling ,Hair Follicle ,Immunohistochemistry ,Mice ,Mice ,Inbred C57BL ,Mice ,Transgenic ,Microarray Analysis ,Microscopy ,Atomic Force ,Models ,Psychological ,Morphogenesis ,Murinae ,RNA-Seq ,Regeneration ,Signal Transduction ,Spatio-Temporal Analysis ,Twist-Related Protein 1 ,Wound Healing - Abstract
Tissue regeneration is a process that recapitulates and restores organ structure and function. Although previous studies have demonstrated wound-induced hair neogenesis (WIHN) in laboratory mice (Mus), the regeneration is limited to the center of the wound unlike those observed in African spiny (Acomys) mice. Tissue mechanics have been implicated as an integral part of tissue morphogenesis. Here, we use the WIHN model to investigate the mechanical and molecular responses of laboratory and African spiny mice, and report these models demonstrate opposing trends in spatiotemporal morphogenetic field formation with association to wound stiffness landscapes. Transcriptome analysis and K14-Cre-Twist1 transgenic mice show the Twist1 pathway acts as a mediator for both epidermal-dermal interactions and a competence factor for periodic patterning, differing from those used in development. We propose a Turing model based on tissue stiffness that supports a two-scale tissue mechanics process: (1) establishing a morphogenetic field within the wound bed (mm scale) and (2) symmetry breaking of the epidermis and forming periodically arranged hair primordia within the morphogenetic field (μm scale). Thus, we delineate distinct chemo-mechanical events in building a Turing morphogenesis-competent field during WIHN of laboratory and African spiny mice and identify its evo-devo advantages with perspectives for regenerative medicine.
- Published
- 2021
7. A Human Skeletal Muscle Atlas Identifies the Trajectories of Stem and Progenitor Cells across Development and from Human Pluripotent Stem Cells
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Xi, Haibin, Langerman, Justin, Sabri, Shan, Chien, Peggie, Young, Courtney S, Younesi, Shahab, Hicks, Michael, Gonzalez, Karen, Fujiwara, Wakana, Marzi, Julia, Liebscher, Simone, Spencer, Melissa, Van Handel, Ben, Evseenko, Denis, Schenke-Layland, Katja, Plath, Kathrin, and Pyle, April D
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Medical Biotechnology ,Biomedical and Clinical Sciences ,Stem Cell Research ,Regenerative Medicine ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Stem Cell Research - Nonembryonic - Non-Human ,Stem Cell Research - Induced Pluripotent Stem Cell ,Stem Cell Research - Embryonic - Human ,Stem Cell Research - Nonembryonic - Human ,1.1 Normal biological development and functioning ,Musculoskeletal ,Biological Sciences ,Medical and Health Sciences ,Developmental Biology ,Biological sciences ,Biomedical and clinical sciences - Abstract
(Cell Stem Cell 27, 158–176.e1–e10; July 2, 2020) It came to our attention that during revision we updated the tSNE plot for the left panel of Figure 1D but mistakenly did not update the right panel of Figure 1D or Figure S1D. This error on our part does not affect any of the results or conclusions of our paper. The abovementioned figures have now been updated with the correct tSNE coordinates and reproduced below. We apologize for this oversight and any inconvenience the readers might have encountered. [Figure presented] [Formula presented][Formula presented] [Formula presented]
- Published
- 2020
8. Non–fibro-adipogenic pericytes from human embryonic stem cells attenuate degeneration of the chronically injured mouse muscle
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Mosich, Gina M, Husman, Regina, Shah, Paras, Sharma, Abhinav, Ressadeh, Kevin, Aderibigbe, Temidayo, Hu, Vivian J, McClintick, Daniel J, Wu, Genbin, Gatto, Jonathan D, Xi, Haibin, Pyle, April D, Péault, Bruno, Petrigliano, Frank A, and Dar, Ayelet
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Medical Physiology ,Biomedical and Clinical Sciences ,Regenerative Medicine ,Stem Cell Research ,Musculoskeletal ,Animals ,Cell Differentiation ,Cell Line ,Chronic Disease ,Disease Models ,Animal ,Female ,Fibrosis ,Human Embryonic Stem Cells ,Humans ,Injections ,Intralesional ,Mice ,Muscle Development ,Muscular Disorders ,Atrophic ,Pericytes ,Rotator Cuff ,Rotator Cuff Injuries ,Transplantation ,Heterologous ,Mouse models ,Muscle Biology ,Skeletal muscle ,Stem cells ,Biomedical and clinical sciences ,Health sciences - Abstract
Massive tears of the rotator cuff (RC) are associated with chronic muscle degeneration due to fibrosis, fatty infiltration, and muscle atrophy. The microenvironment of diseased muscle often impairs efficient engraftment and regenerative activity of transplanted myogenic precursors. Accumulating myofibroblasts and fat cells disrupt the muscle stem cell niche and myogenic cell signaling and deposit excess disorganized connective tissue. Therefore, restoration of the damaged stromal niche with non-fibro-adipogenic cells is a prerequisite to successful repair of an injured RC. We generated from human embryonic stem cells (hES) a potentially novel subset of PDGFR-β+CD146+CD34-CD56- pericytes that lack expression of the fibro-adipogenic cell marker PDGFR-α. Accordingly, the PDGFR-β+PDGFR-α- phenotype typified non-fibro-adipogenic, non-myogenic, pericyte-like derivatives that maintained non-fibro-adipogenic properties when transplanted into chronically injured murine RCs. Although administered hES pericytes inhibited developing fibrosis at early and late stages of progressive muscle degeneration, transplanted PDGFR-β+PDGFR-α+ human muscle-derived fibro-adipogenic progenitors contributed to adipogenesis and greater fibrosis. Additionally, transplanted hES pericytes substantially attenuated muscle atrophy at all tested injection time points after injury. Coinciding with this observation, conditioned medium from cultured hES pericytes rescued atrophic myotubes in vitro. These findings imply that non-fibro-adipogenic hES pericytes recapitulate the myogenic stromal niche and may be used to improve cell-based treatments for chronic muscle disorders.
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- 2019
9. Cas-CLOVER is a novel high-fidelity nuclease for safe and robust generation of TSCM-enriched allogeneic CAR-T cells
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Madison, Blair B., Patil, Deepak, Richter, Maximilian, Li, Xianghong, Tong, Min, Cranert, Stacey, Wang, Xinxin, Martin, Renata, Xi, Haibin, Tan, Yening, Weiss, Leslie, Marquez, Karl, Coronella, Julia, Shedlock, Devon J., and Ostertag, Eric M.
- Published
- 2022
- Full Text
- View/download PDF
10. ERBB3 and NGFR mark a distinct skeletal muscle progenitor cell in human development and hPSCs
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Hicks, Michael R, Hiserodt, Julia, Paras, Katrina, Fujiwara, Wakana, Eskin, Ascia, Jan, Majib, Xi, Haibin, Young, Courtney S, Evseenko, Denis, Nelson, Stanley F, Spencer, Melissa J, Handel, Ben Van, and Pyle, April D
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Biochemistry and Cell Biology ,Biological Sciences ,Human Fetal Tissue ,Stem Cell Research - Induced Pluripotent Stem Cell ,Pediatric ,Stem Cell Research ,Biotechnology ,Muscular Dystrophy ,Stem Cell Research - Embryonic - Human ,Regenerative Medicine ,Stem Cell Research - Nonembryonic - Human ,Duchenne/ Becker Muscular Dystrophy ,Stem Cell Research - Nonembryonic - Non-Human ,Rare Diseases ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,1.1 Normal biological development and functioning ,5.2 Cellular and gene therapies ,Musculoskeletal ,Adult ,Aged ,CRISPR-Cas Systems ,Cell Differentiation ,Dystrophin ,Female ,Gene Editing ,Gene Expression Regulation ,Developmental ,Humans ,Induced Pluripotent Stem Cells ,Male ,Middle Aged ,Muscle Development ,Muscle Fibers ,Skeletal ,Muscular Dystrophy ,Duchenne ,Myoblasts ,Myosins ,Nerve Tissue Proteins ,PAX7 Transcription Factor ,Receptor ,ErbB-3 ,Receptors ,Nerve Growth Factor ,Signal Transduction ,Transforming Growth Factor beta ,Receptor ,erbB-3 ,Medical and Health Sciences ,Developmental Biology ,Biochemistry and cell biology - Abstract
Human pluripotent stem cells (hPSCs) can be directed to differentiate into skeletal muscle progenitor cells (SMPCs). However, the myogenicity of hPSC-SMPCs relative to human fetal or adult satellite cells remains unclear. We observed that hPSC-SMPCs derived by directed differentiation are less functional in vitro and in vivo compared to human satellite cells. Using RNA sequencing, we found that the cell surface receptors ERBB3 and NGFR demarcate myogenic populations, including PAX7 progenitors in human fetal development and hPSC-SMPCs. We demonstrated that hPSC skeletal muscle is immature, but inhibition of transforming growth factor-β signalling during differentiation improved fusion efficiency, ultrastructural organization and the expression of adult myosins. This enrichment and maturation strategy restored dystrophin in hundreds of dystrophin-deficient myofibres after engraftment of CRISPR-Cas9-corrected Duchenne muscular dystrophy human induced pluripotent stem cell-SMPCs. The work provides an in-depth characterization of human myogenesis, and identifies candidates that improve the in vivo myogenic potential of hPSC-SMPCs to levels that are equal to directly isolated human fetal muscle cells.
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- 2018
11. In Vivo Human Somitogenesis Guides Somite Development from hPSCs
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Xi, Haibin, Fujiwara, Wakana, Gonzalez, Karen, Jan, Majib, Liebscher, Simone, Van Handel, Ben, Schenke-Layland, Katja, and Pyle, April D
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Biological Sciences ,Stem Cell Research - Embryonic - Human ,Stem Cell Research - Induced Pluripotent Stem Cell - Human ,Regenerative Medicine ,Stem Cell Research ,Stem Cell Research - Induced Pluripotent Stem Cell ,1.1 Normal biological development and functioning ,Musculoskeletal ,Body Patterning ,Cell Differentiation ,Cells ,Cultured ,Embryonic Development ,Gene Expression Regulation ,Developmental ,Humans ,Mesoderm ,Morphogenesis ,Muscle ,Skeletal ,Pluripotent Stem Cells ,Signal Transduction ,Somites ,Transforming Growth Factor beta ,beta Catenin ,chondrogenesis ,development ,differentiation ,human pluripotent stem cells ,osteogenesis ,skeletal myogenesis ,somite ,Biochemistry and Cell Biology ,Medical Physiology ,Biological sciences - Abstract
Somites form during embryonic development and give rise to unique cell and tissue types, such as skeletal muscles and bones and cartilage of the vertebrae. Using somitogenesis-stage human embryos, we performed transcriptomic profiling of human presomitic mesoderm as well as nascent and developed somites. In addition to conserved pathways such as WNT-β-catenin, we also identified BMP and transforming growth factor β (TGF-β) signaling as major regulators unique to human somitogenesis. This information enabled us to develop an efficient protocol to derive somite cells in vitro from human pluripotent stem cells (hPSCs). Importantly, the in-vitro-differentiating cells progressively expressed markers of the distinct developmental stages that are known to occur during in vivo somitogenesis. Furthermore, when subjected to lineage-specific differentiation conditions, the hPSC-derived somite cells were multipotent in generating somite derivatives, including skeletal myocytes, osteocytes, and chondrocytes. This work improves our understanding of human somitogenesis and may enhance our ability to treat diseases affecting somite derivatives.
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- 2017
12. Generation of PAX7 Reporter Cells to Investigate Skeletal Myogenesis from Human Pluripotent Stem Cells
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Xi, Haibin, primary, Young, Courtney S., additional, and Pyle, April D., additional
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- 2020
- Full Text
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13. Beyond the genome: RNA control of stem cells: Alternative RNA processing controls muscle stem cell activity in distinct muscles
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Xi, Haibin and Pyle, April
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Mice ,MicroRNAs ,Gene Knockdown Techniques ,Myoblasts, Skeletal ,Animals ,RNA, Messenger ,Muscle, Skeletal ,Polyadenylation ,3' Untranslated Regions ,PAX3 Transcription Factor ,Article ,Mice, Mutant Strains ,Ribonucleoprotein, U1 Small Nuclear - Abstract
Adult stem cells are essential for tissue homeostasis. In skeletal muscle, muscle stem cells (MuSCs) reside in a quiescent state, but little is known about the mechanisms that control homeostatic turnover. Here we show that, in mice, the variation in MuSC activation rate among different muscles (for example, limb versus diaphragm muscles) is determined by the levels of the transcription factor Pax3. We further show that Pax3 levels are controlled by alternative polyadenylation of its transcript, which is regulated by the small nucleolar RNA U1. Isoforms of the Pax3 messenger RNA that differ in their 3' untranslated regions are differentially susceptible to regulation by microRNA miR206, which results in varying levels of the Pax3 protein in vivo. These findings highlight a previously unrecognized mechanism of the homeostatic regulation of stem cell fate by multiple RNA species.
- Published
- 2019
14. Abstract 4840: 2-Deoxy-D-glucose induces autophagy through endoplasmic reticulum stress rather than by lowering ATP
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Xi, Haibin, primary, Kurtoglu, Metin, additional, Liu, Huaping, additional, Wangpaichitr, Medhi, additional, You, Min, additional, Savaraj, Niramol, additional, and Lampidis, Theodore J., additional
- Published
- 2010
- Full Text
- View/download PDF
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