15 results on '"Vrathasha, Vrathasha"'
Search Results
2. Dual SMAD inhibition and Wnt inhibition enable efficient and reproducible differentiations of induced pluripotent stem cells into retinal ganglion cells
- Author
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Chavali, Venkata R. M., Haider, Naqi, Rathi, Sonika, Vrathasha, Vrathasha, Alapati, Teja, He, Jie, Gill, Kamaljot, Nikonov, Roman, Duong, Thu T., McDougald, Devin S., Nikonov, Sergei, O’Brien, Joan, and Mills, Jason A.
- Published
- 2020
- Full Text
- View/download PDF
3. Bone Morphogenetic Protein-2 Conjugated to Quantum Dot®s is Biologically Functional
- Author
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Daniel Halloran, Vrathasha Vrathasha, Hilary W. Durbano, and Anja Nohe
- Subjects
BMP-2 ,FTIR ,Bone: QDot®s ,fluorescence imaging ,mineralization ,Chemistry ,QD1-999 - Abstract
Quantum Dot®s (QDot®s) are novel, semi-conductive nanostructures that emit a certain fluorescence when excited by specific wavelengths. QDot®s are more photostable, brighter, and photobleach less than other fluorescent dyes. These characteristics give them the potential to be used in many biological applications. The shells of QDot®s are coated with functional groups, such as carboxylate and organic groups, allowing them to couple to peptides/proteins and be used for real-time imaging and high-resolution microscopy. Here, we utilize Quantum Dot®s and Bone Morphogenetic Protein-2 (BMP-2) to create a BMP-2-QDot®s conjugate. BMP-2 is a growth factor that drives many processes such as cardiogenesis, neural growth, and osteogenesis. Despite its numerous roles, the trafficking and uptake of BMP-2 into cells is not well-established, especially during progression of diseases. The results presented here demonstrate for the first time a fluorescent BMP-2 analog that binds to the BMP-receptors (BMPRs), remains biologically active, and is stable for long time periods. Previous attempts to develop a biological BMP-2 analog with Fluorescein isothiocyanate (FITC) or nanodiamonds lacked data on the analog’s stability. Furthermore, these analogs did not address whether they can signal within the cell by binding to the BMPRs or were mediated by non-stable conjugates.
- Published
- 2020
- Full Text
- View/download PDF
4. Mechanism of CK2.3, a Novel Mimetic Peptide of Bone Morphogenetic Protein Receptor Type IA, Mediated Osteogenesis
- Author
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Vrathasha Vrathasha, Hilary Weidner, and Anja Nohe
- Subjects
bone ,osteoporosis ,osteogenesis ,BMP2 ,CK2 ,CK2.3 ,osteogenic signal transduction ,western blots ,RT-qPCR ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Background: Osteoporosis is a degenerative skeletal disease with a limited number of treatment options. CK2.3, a novel peptide, may be a potential therapeutic. It induces osteogenesis and bone formation in vitro and in vivo by acting downstream of BMPRIA through releasing CK2 from the receptor. However, the detailed signaling pathways, the time frame of signaling, and genes activated remain largely unknown. Methods: Using a newly developed fluorescent CK2.3 analog, specific inhibitors for the BMP signaling pathways, Western blot, and RT-qPCR, we determined the mechanism of CK2.3 in C2C12 cells. We then confirmed the results in primary BMSCs. Results: Using these methods, we showed that CK2.3 stimulation activated OSX, ALP, and OCN. CK2.3 stimulation induced time dependent release of CK2β from BMPRIA and concurrently CK2.3 colocalized with CK2α. Furthermore, CK2.3 induced BMP signaling depends on ERK1/2 and Smad1/5/8 signaling pathways. Conclusion: CK2.3 is a novel peptide that drives osteogenesis, and we detailed the molecular sequence of events that are triggered from the stimulation of CK2.3 until the induction of mineralization. This knowledge can be applied in the development of future therapeutics for osteoporosis.
- Published
- 2019
- Full Text
- View/download PDF
5. Dual SMAD inhibition and Wnt inhibition enable efficient and reproducible differentiations of induced pluripotent stem cells into retinal ganglion cells
- Author
-
Kamaljot Gill, Teja Alapati, Devin S. McDougald, Vrathasha Vrathasha, Jason A. Mills, Sergei Nikonov, Thu T. Duong, Jie He, Naqi Haider, Sonika Rathi, Joan M O Apos Brien, Roman Nikonov, and Venkata R M Chavali
- Subjects
Retinal Ganglion Cells ,genetic structures ,Neurogenesis ,Cell ,Induced Pluripotent Stem Cells ,lcsh:Medicine ,Smad Proteins ,Developmental neurogenesis ,SMAD ,Retinal ganglion ,Retina ,Article ,Immunophenotyping ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,medicine ,Humans ,Induced pluripotent stem cell ,lcsh:Science ,030304 developmental biology ,0303 health sciences ,Multidisciplinary ,Gene Expression Profiling ,lcsh:R ,Wnt signaling pathway ,Computational Biology ,Cell Differentiation ,Retinal ,Immunohistochemistry ,eye diseases ,Cell biology ,Wnt Proteins ,medicine.anatomical_structure ,chemistry ,Differentiation ,Optic nerve ,lcsh:Q ,sense organs ,Stem cell ,030217 neurology & neurosurgery ,Signal Transduction - Abstract
Glaucoma is a group of progressive optic neuropathies that share common biological and clinical characteristics including irreversible changes to the optic nerve and visual field loss caused by death of retinal ganglion cells (RGCs). The loss of RGCs manifests as characteristic cupping or optic nerve degeneration, resulting in visual field loss in patients with Glaucoma. Published studies on in vitro RGC differentiation from stem cells utilized classical RGC signaling pathways mimicking retinal development in vivo. Although many strategies allowed for the generation of RGCs, increased variability between experiments and lower yield hampered the cross comparison between individual lines and between experiments. To address this critical need, we developed a reproducible chemically defined in vitro methodology for generating retinal progenitor cell (RPC) populations from iPSCs, that are efficiently directed towards RGC lineage. Using this method, we reproducibly differentiated iPSCs into RGCs with greater than 80% purity, without any genetic modifications. We used small molecules and peptide modulators to inhibit BMP, TGF-β (SMAD), and canonical Wnt pathways that reduced variability between iPSC lines and yielded functional and mature iPSC-RGCs. Using CD90.2 antibody and Magnetic Activated Cell Sorter (MACS) technique, we successfully purified Thy-1 positive RGCs with nearly 95% purity.
- Published
- 2020
6. Mechanisms of Cellular Internalization of Quantum Dot® Conjugated Bone Formation Mimetic Peptide CK2.3
- Author
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Vrathasha Vrathasha, Karl Booksh, Randall L. Duncan, and Anja Nohe
- Subjects
Bone ,Osteoporosis ,CK2.3 ,Qdot®s ,Fluorescence imaging ,FTIR ,Chemistry ,QD1-999 - Abstract
Osteoporosis is a debilitating skeletal disorder that is characterized by loss of bone densityover time. It affects one in two women and one in four men, age 50 and older. New treatmentsthat specifically drive bone formation are desperately needed. We developed a peptide, CK2.3, thatacts downstream of the bone morphogenetic protein receptor type Ia and it induces osteogenesisin-vitro and in-vivo. However, its mechanism of action, especially its mode of uptake by cellsremains unknown. To demonstrate CK2.3 internalization within a cell, we conjugated CK2.3to Quantum Dot®s (Qdot®s), semiconductor nanoparticles. We purified CK2.3-Qdot®s by sizeexclusion chromatography and verified the conjugation and stability using UV/VIS and Fouriertransform infrared spectroscopy. Our results show that CK2.3 was conjugated to the Qdot®s andthe conjugate was stable for at least 4 days at 37 °C. Moreover, CK2.3-Qdot®s exerted biologicalresponse similar to CK2.3. Addition of CK2.3-Qdot®s to cells followed by confocal imaging revealedthat CK2.3-Qdot®s were internalized at 6 h post stimulation. Furthermore, using pharmacologicalinhibitors against endocytic pathways, we demonstrated that CK2.3-Qdot®s were internalized bycaveolae. These results show for the first time that the novel peptide CK2.3 is taken up by the cellthrough caveolae mediated endocytosis.
- Published
- 2018
- Full Text
- View/download PDF
7. Single Cell Sequencing of Induced Pluripotent Stem Cell Derived Retinal Ganglion Cells (iPSC-RGC) Reveals Distinct Molecular Signatures and RGC Subtypes
- Author
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Gudiseva, Harini V., primary, Vrathasha, Vrathasha, additional, He, Jie, additional, Bungatavula, Devesh, additional, O’Brien, Joan M., additional, and Chavali, Venkata R. M., additional
- Published
- 2021
- Full Text
- View/download PDF
8. Bone Morphogenetic Protein-2 Conjugated to Quantum Dot®s is Biologically Functional
- Author
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Vrathasha Vrathasha, Anja Nohe, Daniel Halloran, and Hilary W Durbano
- Subjects
Fluorescence-lifetime imaging microscopy ,General Chemical Engineering ,medicine.medical_treatment ,Conjugated system ,Bone morphogenetic protein 2 ,lcsh:Chemistry ,03 medical and health sciences ,chemistry.chemical_compound ,0302 clinical medicine ,fluorescence imaging ,BMP-2 ,medicine ,General Materials Science ,mineralization ,Fluorescein isothiocyanate ,030304 developmental biology ,0303 health sciences ,Mathematics::Commutative Algebra ,Growth factor ,Condensed Matter::Mesoscopic Systems and Quantum Hall Effect ,Photobleaching ,Fluorescence ,Bone: QDot®s ,Mathematics::Logic ,lcsh:QD1-999 ,chemistry ,FTIR ,Quantum dot ,Biophysics ,030217 neurology & neurosurgery ,Computer Science::Formal Languages and Automata Theory - Abstract
Quantum Dot®, s (QDot®, s) are novel, semi-conductive nanostructures that emit a certain fluorescence when excited by specific wavelengths. QDot®, s are more photostable, brighter, and photobleach less than other fluorescent dyes. These characteristics give them the potential to be used in many biological applications. The shells of QDot®, s are coated with functional groups, such as carboxylate and organic groups, allowing them to couple to peptides/proteins and be used for real-time imaging and high-resolution microscopy. Here, we utilize Quantum Dot®, s and Bone Morphogenetic Protein-2 (BMP-2) to create a BMP-2-QDot®, s conjugate. BMP-2 is a growth factor that drives many processes such as cardiogenesis, neural growth, and osteogenesis. Despite its numerous roles, the trafficking and uptake of BMP-2 into cells is not well-established, especially during progression of diseases. The results presented here demonstrate for the first time a fluorescent BMP-2 analog that binds to the BMP-receptors (BMPRs), remains biologically active, and is stable for long time periods. Previous attempts to develop a biological BMP-2 analog with Fluorescein isothiocyanate (FITC) or nanodiamonds lacked data on the analog&rsquo, s stability. Furthermore, these analogs did not address whether they can signal within the cell by binding to the BMPRs or were mediated by non-stable conjugates.
- Published
- 2020
- Full Text
- View/download PDF
9. Single Cell Sequencing of Induced Pluripotent Stem Cell Derived Retinal Ganglion Cells (iPSC-RGC) Reveals Distinct Molecular Signatures and RGC Subtypes
- Author
-
Harini V. Gudiseva, Vrathasha Vrathasha, Jie He, Devesh Bungatavula, Joan M. O’Brien, and Venkata R. M. Chavali
- Subjects
genetic structures ,Induced Pluripotent Stem Cells ,iPSCs ,QH426-470 ,Article ,single cell sequencing ,RGC subtypes ,Genetics ,Humans ,Gene Regulatory Networks ,FACS analysis ,Cells, Cultured ,marker genes ,retinal ganglion cells ,transcriptome ,iPSC-RGCs ,clustering ,glaucoma ,Genetics (clinical) ,Sequence Analysis, RNA ,Gene Expression Profiling ,Chromosome Mapping ,High-Throughput Nucleotide Sequencing ,Cell Differentiation ,Flow Cytometry ,sense organs ,Single-Cell Analysis - Abstract
We intend to identify marker genes with differential gene expression (DEG) and RGC subtypes in cultures of human-induced pluripotent stem cell (iPSC)-derived retinal ganglion cells. Single-cell sequencing was performed on mature and functional iPSC-RGCs at day 40 using Chromium Single Cell 3’ V3 protocols (10X Genomics). Sequencing libraries were run on Illumina Novaseq to generate 150 PE reads. Demultiplexed FASTQ files were mapped to the hg38 reference genome using the STAR package, and cluster analyses were performed using a cell ranger and BBrowser2 software. QC analysis was performed by removing the reads corresponding to ribosomal and mitochondrial genes, as well as cells that had less than 1X mean absolute deviation (MAD), resulting in 4705 cells that were used for further analyses. Cells were separated into clusters based on the gene expression normalization via PCA and TSNE analyses using the Seurat tool and/or Louvain clustering when using BBrowser2 software. DEG analysis identified subsets of RGCs with markers like MAP2, RBPMS, TUJ1, BRN3A, SOX4, TUBB3, SNCG, PAX6 and NRN1 in iPSC-RGCs. Differential expression analysis between separate clusters identified significant DEG transcripts associated with cell cycle, neuron regulatory networks, protein kinases, calcium signaling, growth factor hormones, and homeobox transcription factors. Further cluster refinement identified RGC diversity and subtype specification within iPSC-RGCs. DEGs can be used as biomarkers for RGC subtype classification, which will allow screening model systems that represent a spectrum of diseases with RGC pathology.
- Published
- 2021
10. Bone Morphogenetic Protein-2 Conjugated to Quantum Dot®s is Biologically Functional
- Author
-
Halloran, Daniel, primary, Vrathasha, Vrathasha, additional, Durbano, Hilary W., additional, and Nohe, Anja, additional
- Published
- 2020
- Full Text
- View/download PDF
11. Mechanisms of Cellular Internalization of Quantum Dot® Conjugated Bone Formation Mimetic Peptide CK2.3
- Author
-
Karl S. Booksh, Anja Nohe, Vrathasha Vrathasha, and Randall L. Duncan
- Subjects
0301 basic medicine ,Fluorescence-lifetime imaging microscopy ,animal structures ,General Chemical Engineering ,media_common.quotation_subject ,Endocytic cycle ,Peptide ,Article ,Fluorescence imaging ,lcsh:Chemistry ,03 medical and health sciences ,0302 clinical medicine ,Skeletal disorder ,medicine ,General Materials Science ,Bone morphogenetic protein receptor ,Internalization ,Bone ,media_common ,chemistry.chemical_classification ,Qdot®s ,Chemistry ,fungi ,CK2.3 ,3. Good health ,030104 developmental biology ,Mechanism of action ,lcsh:QD1-999 ,FTIR ,030220 oncology & carcinogenesis ,embryonic structures ,Biophysics ,Osteoporosis ,medicine.symptom ,Conjugate - Abstract
Osteoporosis is a debilitating skeletal disorder that is characterized by loss of bone densityover time. It affects one in two women and one in four men, age 50 and older. New treatmentsthat specifically drive bone formation are desperately needed. We developed a peptide, CK2.3, thatacts downstream of the bone morphogenetic protein receptor type Ia and it induces osteogenesisin-vitro and in-vivo. However, its mechanism of action, especially its mode of uptake by cellsremains unknown. To demonstrate CK2.3 internalization within a cell, we conjugated CK2.3to Quantum Dot®, s (Qdot®, s), semiconductor nanoparticles. We purified CK2.3-Qdot®, s by sizeexclusion chromatography and verified the conjugation and stability using UV/VIS and Fouriertransform infrared spectroscopy. Our results show that CK2.3 was conjugated to the Qdot®, s andthe conjugate was stable for at least 4 days at 37 °, C. Moreover, CK2.3-Qdot®, s exerted biologicalresponse similar to CK2.3. Addition of CK2.3-Qdot®, s to cells followed by confocal imaging revealedthat CK2.3-Qdot®, s were internalized at 6 h post stimulation. Furthermore, using pharmacologicalinhibitors against endocytic pathways, we demonstrated that CK2.3-Qdot®, s were internalized bycaveolae. These results show for the first time that the novel peptide CK2.3 is taken up by the cellthrough caveolae mediated endocytosis.
- Published
- 2018
- Full Text
- View/download PDF
12. Mechanism of CK2.3, a Novel Mimetic Peptide of Bone Morphogenetic Protein Receptor Type IA, Mediated Osteogenesis
- Author
-
Anja Nohe, Hilary Weidner, and Vrathasha Vrathasha
- Subjects
0301 basic medicine ,Stimulation ,bone ,lcsh:Chemistry ,Mice ,0302 clinical medicine ,Bone morphogenetic protein receptor ,Receptor ,lcsh:QH301-705.5 ,Spectroscopy ,medicine.diagnostic_test ,Chemistry ,General Medicine ,3. Good health ,Computer Science Applications ,Cell biology ,osteogenic signal transduction ,030220 oncology & carcinogenesis ,embryonic structures ,Female ,Signal transduction ,C2C12 ,Signal Transduction ,animal structures ,MAP Kinase Signaling System ,CK2 ,BMP2 ,Bone Marrow Cells ,western blots ,Bone morphogenetic protein 2 ,Article ,Catalysis ,Cell Line ,osteogenesis ,Inorganic Chemistry ,03 medical and health sciences ,Western blot ,In vivo ,medicine ,Animals ,Physical and Theoretical Chemistry ,Molecular Biology ,Bone Morphogenetic Protein Receptors, Type I ,RT-qPCR ,fungi ,Organic Chemistry ,CK2.3 ,Smad Proteins, Receptor-Regulated ,osteoporosis ,Peptide Fragments ,030104 developmental biology ,lcsh:Biology (General) ,lcsh:QD1-999 - Abstract
Background: Osteoporosis is a degenerative skeletal disease with a limited number of treatment options. CK2.3, a novel peptide, may be a potential therapeutic. It induces osteogenesis and bone formation in vitro and in vivo by acting downstream of BMPRIA through releasing CK2 from the receptor. However, the detailed signaling pathways, the time frame of signaling, and genes activated remain largely unknown. Methods: Using a newly developed fluorescent CK2.3 analog, specific inhibitors for the BMP signaling pathways, Western blot, and RT-qPCR, we determined the mechanism of CK2.3 in C2C12 cells. We then confirmed the results in primary BMSCs. Results: Using these methods, we showed that CK2.3 stimulation activated OSX, ALP, and OCN. CK2.3 stimulation induced time dependent release of CK2&beta, from BMPRIA and concurrently CK2.3 colocalized with CK2&alpha, Furthermore, CK2.3 induced BMP signaling depends on ERK1/2 and Smad1/5/8 signaling pathways. Conclusion: CK2.3 is a novel peptide that drives osteogenesis, and we detailed the molecular sequence of events that are triggered from the stimulation of CK2.3 until the induction of mineralization. This knowledge can be applied in the development of future therapeutics for osteoporosis.
- Published
- 2019
13. Mechanisms of Cellular Internalization of Quantum Dot®Conjugated Bone Formation Mimetic Peptide CK2.3.
- Author
-
Vrathasha, Vrathasha, Booksh, Karl, Duncan, Randall L., and Nohe, Anja
- Subjects
QUANTUM dots ,PEPTIDES ,OSTEOPOROSIS treatment - Abstract
Osteoporosis is a debilitating skeletal disorder that is characterized by loss of bone density over time. It affects one in two women and one in four men, age 50 and older. New treatments that specifically drive bone formation are desperately needed. We developed a peptide, CK2.3, that acts downstream of the bone morphogenetic protein receptor type Ia and it induces osteogenesis in-vitro and in-vivo. However, its mechanism of action, especially its mode of uptake by cells remains unknown. To demonstrate CK2.3 internalization within a cell, we conjugated CK2.3 to Quantum Dot®s (Qdot®s), semiconductor nanoparticles. We purified CK2.3-Qdot®s by size exclusion chromatography and verified the conjugation and stability using UV/VIS and Fourier transform infrared spectroscopy. Our results show that CK2.3 was conjugated to the Qdot®s and the conjugate was stable for at least 4 days at 37 °C. Moreover, CK2.3-Qdot®s exerted biological response similar to CK2.3. Addition of CK2.3-Qdot®s to cells followed by confocal imaging revealed that CK2.3-Qdot®s were internalized at 6 h post stimulation. Furthermore, using pharmacological inhibitors against endocytic pathways, we demonstrated that CK2.3-Qdot®s were internalized by caveolae. These results show for the first time that the novel peptide CK2.3 is taken up by the cell through caveolae mediated endocytosis. [ABSTRACT FROM AUTHOR]
- Published
- 2018
- Full Text
- View/download PDF
14. Piezo1 and Piezo2 channels in retinal ganglion cells and the impact of Piezo1 stimulation on light-dependent neural activity.
- Author
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Sripinun P, See LP, Nikonov S, Chavali VRM, Vrathasha V, He J, O'Brien JM, Xia J, Lu W, and Mitchell CH
- Abstract
Piezo channels are associated with neuropathology in diseases like traumatic brain injury and glaucoma, but pathways linking tissue stretch to aberrant neural signaling remain unclear. The present study demonstrates that Piezo1 activation increases action potential frequency in response to light and the spontaneous dark signal from mouse retinal explants. Piezo1 stimulation was sufficient to increase cytoplasmic Ca
2+ in soma and neurites, while stretch increased spiking activity in current clamp recordings from of isolated retinal ganglion cells (RGCs). Axon-marker beta-tubulin III colocalized with both Piezo1 and Piezo2 protein in the mouse optic nerve head, while RGC nuclear marker BRN3A colocalized with Piezo channels in the soma. Piezo1 was also present on GFAP-positive regions in the optic nerve head and colocalized with glutamine synthetase in the nerve fiber layer, suggesting expression in optic nerve head astrocytes and Müller glia end feet, respectively. Human RGCs from induced pluripotent stem cells also expressed Piezo1 and Piezo2 in soma and axons, while staining patterns in rats resembled those in mice. mRNA message for Piezo1 was greatest in the RPE/choroid tissue, while Piezo2 levels were highest in the optic nerve, with both channels also expressed in the retina. Increased expression of Piezo1 and Piezo2 occurred both 1 and 10 days after a single stretch in vivo; this increase suggests a potential role in rising sensitivity to repeated nerve stretch. In summary, Piezo1 and Piezo2 were detected in the soma and axons of RGCs, and stimulation affected the light-dependent output of RGCs. The rise in RGCs excitability induced by Piezo stimulation may have parallels to the early disease progression in models of glaucoma and other retinal degenerations., Highlights: Activation of Piezo1 excites retinal ganglion cells, paralleling the early neurodegenerative progression in glaucoma mouse models and retinal degeneration.Piezo1 and Piezo2 were expressed in axons and soma of retinal ganglion cells in mice, rats, and human iPSC-RGCs.Functional assays confirmed Piezo1 in soma and neurites of neurons. Sustained elevation of Piezo1 and Piezo2 occurred after a single transient stretch may enhance damage from repeated traumatic nerve injury.- Published
- 2024
- Full Text
- View/download PDF
15. Bone Morphogenetic Protein-2 Conjugated to Quantum Dot ® s is Biologically Functional.
- Author
-
Halloran D, Vrathasha V, Durbano HW, and Nohe A
- Abstract
Quantum Dot
® s (QDot® s) are novel, semi-conductive nanostructures that emit a certain fluorescence when excited by specific wavelengths. QDot® s are more photostable, brighter, and photobleach less than other fluorescent dyes. These characteristics give them the potential to be used in many biological applications. The shells of QDot® s are coated with functional groups, such as carboxylate and organic groups, allowing them to couple to peptides/proteins and be used for real-time imaging and high-resolution microscopy. Here, we utilize Quantum Dot® s and Bone Morphogenetic Protein-2 (BMP-2) to create a BMP-2-QDot® s conjugate. BMP-2 is a growth factor that drives many processes such as cardiogenesis, neural growth, and osteogenesis. Despite its numerous roles, the trafficking and uptake of BMP-2 into cells is not well-established, especially during progression of diseases. The results presented here demonstrate for the first time a fluorescent BMP-2 analog that binds to the BMP-receptors (BMPRs), remains biologically active, and is stable for long time periods. Previous attempts to develop a biological BMP-2 analog with Fluorescein isothiocyanate (FITC) or nanodiamonds lacked data on the analog's stability. Furthermore, these analogs did not address whether they can signal within the cell by binding to the BMPRs or were mediated by non-stable conjugates.- Published
- 2020
- Full Text
- View/download PDF
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