727 results on '"Tedja A"'
Search Results
2. Systematic literature review using PRISMA: exploring the influence of service quality and perceived value on satisfaction and intention to continue relationship
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Tedja, Budiarto, Al Musadieq, Mochammad, Kusumawati, Andriani, and Yulianto, Edy
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- 2024
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3. Performance and Efficiency Comparison of U-Net and Ghost U-Net in Road Crack Segmentation with Floating Point and Quantization Optimization
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Haidhi Angkawijana Tedja and Onno W. Purbo
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ghost u-net ,image segmentation ,memory efficiency ,quantization ,u-net ,Systems engineering ,TA168 ,Information technology ,T58.5-58.64 - Abstract
This study presents a comprehensive comparison of U-Net and Ghost U-Net for road crack segmentation, emphasizing their performance and memory efficiency across various data representation formats, including FP32, FP16, and INT8 quantization. A dataset of 12,480 images was used, with preprocessing steps such as binarization and normalization to improve segmentation accuracy. Results show that Ghost U-Net achieved a marginally higher performance, with an IoU of 0.5041 and a Dice coefficient of 0.6664, compared to U-Net’s IoU of 0.5034 and Dice coefficient of 0.6662. Ghost U-Net also demonstrated significant memory efficiency, reducing GPU usage by up to 60% in FP16 and INT8 formats. However, a sharp decline in performance was observed for Ghost U-Net in the INT8 format, where the IoU dropped to 0.2038 and the Dice coefficient to 0.3227, whereas U-Net maintained stable performance across all formats. These findings suggest that Ghost U-Net is preferable for applications prioritizing memory efficiency and inference speed, while U-Net may be better suited for tasks requiring consistent accuracy across different quantization levels. This study underscores the importance of considering both performance stability and memory efficiency when selecting models for deployment in real-world applications.
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- 2024
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4. Diagnostic Accuracy of Ultrasound in Cholestatic Infants with Biliary Atresia
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Hermis Arsena, Audric Kenny Tedja, Hesti Gunarti, Tiara Putri Leksono, Afina Azka Latifanisa Kuncoro, Adisrasti Rejeki Amaragati, Akhmad Makhmudi, and Gunadi
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Pediatrics ,RJ1-570 - Abstract
Objective: Biliary atresia (BA) is an obstructive cholangiopathy that involves the intrahepatic and extrahepatic bile ducts. Ultrasound (US) can aid in evaluation of the biliary system and be efficiently used in daily practice. However, most studies on US for diagnosing BA have been conducted in developed countries. Therefore, we have aimed to evaluate the diagnostic accuracy of US in BA in infants with cholestasis from a developing country. Materials and Methods: This retrospective study used data collected from our hospital medical records. The US findings were compared with the gold standard intraoperative or cholangiography findings. Results: Thirty-five BA patients (19 males and 16 females) and 36 controls (20 males and 16 females) were included in the study. Most of the patients (85.7%) were ≤ 6 months old. The absence of a gallbladder demonstrated 71.42% sensitivity (Sn), 91.67% specificity (Sp), 89.29% positive predictive value (PPV), 76.74% negative predictive value (NPV), 8.57 positive likelihood ratio (LR+), and 0.31 negative likelihood ratio (LR−) for diagnosing BA. The triangular cord sign demonstrated 14.28% Sn, 100% Sp, 100% PPV, 76.74% NPV, ∞ LR+, and 0.86 LR- for diagnosing BA. The combination of gallbladder absence and a positive triangular cord sign demonstrated 82.85% Sn, 91.67% Sp, 90.63% PPV, 84.61% NPV, 9.95 LR+, and 0.19 LR− for diagnosing BA. Conclusion: The diagnostic accuracy of US in BA is high, indicating that it can be the imaging tool of choice in infants with cholestasis. Ultrasound is safe and can be easily used in daily practice without the risk of radiation exposure.
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- 2024
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5. Adipose microenvironment promotes hypersialylation of ovarian cancer cells
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Alexandra Fox, Garry D. Leonard, Nicholas Adzibolosu, Terrence Wong, Roslyn Tedja, Sapna Sharma, Radhika Gogoi, Robert Morris, Gil Mor, Charlie Fehl, and Ayesha B. Alvero
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ovarian cancer ,sialic acid ,sialylation ,adipose microenvironment ,ST3GAL1 ,ST6GAL1 ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
IntroductionOvarian and other peritoneal cancers have a strong tendency to metastasize into the surrounding adipose tissue. This study describes an effect of the adipose microenvironment on upregulation of sialic acid-containing glycans in ovarian cancer (OC). Heterogeneous populations of glycosylated OC tumors converged to a highly sialylated cell state that regulates tumorigenesis in an immune-dependent manner.MethodsWe modeled the adipose microenvironment by conditioning growth media with human patient-derived adipose tissue. OC cell lines grown in the presence vs. absence of adipose conditioned media (ACM) were characterized by transcriptomics, western blotting, and chemical biology glycan labeling methods. Fluorescence-activated cell sorting was used to separate adipose-driven upregulation of hypersialylated (“SNA-high”) vs. hyposialylated (“SNA-low”) OC subpopulations. The two subpopulations were characterized by further transcriptomic and quantitative polymerase chain reaction analyses, then injected into a syngeneic mouse model. Immune system involvement was implicated using wild type and athymic nude mice with a primary endpoint of overall survival.ResultsAdipose conditioning resulted in upregulation of sialyltransferases ST3GAL1, ST6GAL1, ST6GALNAC3, and ST8Sia1. In culture, OC cells displayed two distinct sialylated subpopulations that were stable for up to 9 passages, suggesting inherent heterogeneity in sialylation that is maintained throughout cell division and media changes. OC tumors that implanted in the omental adipose tissue exclusively reprogrammed to the highly sialylated subpopulation. In wild type C57BL/6 mice, only the hypersialylated SNA-high subpopulation implanted in the adipose, whereas the hyposialylated SNA-low subpopulation failed to be tumorigenic (p=0.023, n=5). In the single case where SNA-low established a tumor, post-mortem analysis revealed reprogramming of the tumor to the SNA-high state in vivo. In athymic nude mice, both subpopulations rapidly formed tumors, implicating a role of the adaptive immune system.ConclusionsThese findings suggest a model of glycan-dependent tumor evolution wherein the adipose microenvironment reprograms OC to a tumorigenic state that resists the adaptive immune system. Mechanistically, adipose factors upregulate sialyltransferases. To our knowledge, this is the first demonstration of the effect of adipose microenvironment on OC tumor sialylation. Our results set the stage for translational applications targeting sialic acid pathways in OC and other peritoneal cancer tumorigenesis and metastasis.
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- 2024
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6. Adipose-derived exosomal miR-421 targets CBX7 and promotes metastatic potential in ovarian cancer cells
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Yi Zhang, Roslyn Tedja, Michael Millman, Terrence Wong, Alexandra Fox, Hussein Chehade, Meyer Gershater, Nicholas Adzibolosu, Radhika Gogoi, Matthew Anderson, Thomas Rutherford, Zhenggang Zhang, Michael Chopp, Gil Mor, and Ayesha B. Alvero
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Gynecology and obstetrics ,RG1-991 - Abstract
Abstract Background Chromobox protein homolog 7 (CBX7), a member of the Polycomb repressor complex, is a potent epigenetic regulator and gene silencer. Our group has previously reported that CBX7 functions as a tumor suppressor in ovarian cancer cells and its loss accelerated formation of carcinomatosis and drove tumor progression in an ovarian cancer mouse model. The goal of this study is to identify specific signaling pathways in the ovarian tumor microenvironment that down-regulate CBX7. Given that adipocytes are an integral component of the peritoneal cavity and the ovarian tumor microenvironment, we hypothesize that the adipose microenvironment is an important regulator of CBX7 expression. Results Using conditioned media from human omental explants, we found that adipose-derived exosomes mediate CBX7 downregulation and enhance migratory potential of human ovarian cancer cells. Further, we identified adipose-derived exosomal miR-421 as a novel regulator of CBX7 expression and the main effector that downregulates CBX7. Conclusion In this study, we identified miR-421 as a specific signaling pathway in the ovarian tumor microenvironment that can downregulate CBX7 to induce epigenetic change in OC cells, which can drive disease progression. These findings suggest that targeting exosomal miR-421 may curtail ovarian cancer progression.
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- 2023
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7. Antibacterial and antivirulence factor activities of protein hydrolysates from Phatthalung Sangyod rice (Oryza sativa L.) seeds against zoonotic and foodborne pathogens
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Prawit Rodjan, Suthinee Sangkanu, Watcharapong Mitsuwan, Monsicha Pongpom, Phirabhat Saengsawang, Irma Tedja, Jarunet Lamai, Kritsada Pruksaphon, and Juthatip Jeenkeawpieam
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antibacterial peptide ,foodborne pathogens ,phatthalung sangyod rice ,protein hydrolysate ,zoonotic ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Background and Aim: Antimicrobial resistance is an emerging public health threat. Foodborne illnesses are typically caused by bacteria, such as Escherichia coli, Pseudomonas aeruginosa, Bacillus cereus, and Staphylococcus aureus, which are frequently resistant to common antimicrobial agents. Rice is a staple grain in most parts of the world. Our previous work showed that Phatthalung Sangyod rice seed protein hydrolysates (SYPs), especially SYP4, exhibit antifungal activity against several fungal species that are pathogenic for both humans and animals and are non-cytotoxic to animal red blood cells. In this study, we aimed to determine the effects of the bioactive peptides in SYPs against several pathogenic bacteria in humans and animals. Materials and Methods: After isolating SYP1, it was treated as follows: heated (SYP2), and hydrolyzed using pepsin (SYP3), and proteinase K (SYP4). Then, we used 500 μg of protein to evaluate the antibacterial effects on four pathogenic bacteria, including E. coli, P. aeruginosa, B. cereus, and S. aureus, using agar well diffusion. Using a broth microdilution assay, we determined the minimum inhibitory and bactericidal concentration (MIC and MBC, respectively) values of active SYPs. Using the agar well diffusion and microtube incubation methods, we also assessed the inhibitory effects of SYPs on the bacterial quorum sensing (QS) activity of Chromobacterium violaceum. Sangyod rice seed protein hydrolysates were evaluated for their ability to inhibit the biofilm formation of bacterial cells by a crytal violet assay. Furthermore, using the dropping method, we tested the inhibitory effects of SYPs on the bacterial pigments pyocyanin in P. aeruginosa and staphyloxanthin in S. aureus. Results: Our results showed that the crude protein lysate (SYP1) did not exhibit antibacterial activity against any of the test bacteria. Intriguingly, after boiling (SYP2) and enzymatic hydrolysis (SYP3 and SYP4), the protein hydrolysates were transformed into bioactive peptides and displayed antibacterial properties against all of the test bacteria at a concentration of 500 μg as determined by agar well diffusion. SYP4 demonstrated the highest antibacterial activity as it completely inhibited all test strains, with inhibition zones ranging from 16.88 ± 0.25 to 21.25 ± 0.5 mm, and also yielded the highest MIC/MBC values against P. aeruginosa, B. cereus, and E. coli, at 256 and >256 μg/mL, respectively. We observed that at least 256 μg/mL of SYP4 is required to exhibit optimal antibacterial activity. At 16–128 μg/mL, it exhibited antibiofilm activity against S. aureus. Furthermore, at 256 μg/mL, SYP4 inhibited pyocyanin in P. aeruginosa and staphyloxanthin in S. aureus. Although SYP2 and SYP3 displayed weak antibacterial activity and their MIC values could not be obtained for all bacteria, they showed strong QS inhibition in C. violaceum at 256 μg protein. Moreover, SYP2 and SYP3, at a minimum concentration of 32 μg/mL, significantly reduced violacein production. SYP3 also showed biofilm reduction activity on S. aureus at least 16-512 μg/mL. Conclusion: Sangyod Phatthalung protein hydrolysates exerted excellent inhibitory effects against the growth of bacteria and their virulence factors, such as QS, biofilm formation, and/or pigment production. These factors include zoonotic and foodborne pathogens. Therefore, daily consumption of Sangyod Phatthalung rice might reduce the risk of bacterial pathogenesis and foodborne diseases. In conclusion, functional foods or alternate methods of treating bacterial illnesses may be developed in humans and animals.
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- 2023
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8. Video dataset of Balinese dance basic movement for action recognition
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I Nyoman Rudy Hendrawan, Putu Setyarini, Putu Andika Tedja Permana, I Made Hermanto, I Gusti Agung Putu Dharma Putra, and Anak Agung Ayu Citra Maharani
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Video dataset ,Balinese dance ,Action recognition ,Computer applications to medicine. Medical informatics ,R858-859.7 ,Science (General) ,Q1-390 - Abstract
In the convergence of cultural heritage preservation and computational research, this paper presents a comprehensive dataset capturing the nuanced artistry of traditional Balinese dancing. This endeavour not only documents but also aims to protect these intricate dance movements, bridging technological advancements with rich cultural traditions. The dataset includes 1740 and 828 high-definition video recordings of female and male dancers, respectively, showcasing 24 unique dance movements. These recordings, made using multiple smartphone cameras from various perspectives, reflect the dance's complex nature and emphasize gender-based movement variations, key for detailed cultural analysis. Our systematic approach involved three strategically placed cameras, capturing diverse angles for a holistic view. The subsequent preprocessing stage, including segmenting and labelling, has enhanced the dataset's clarity, making it a valuable resource for cultural studies and computational analysis in preserving intangible cultural heritage. The videos, stored in MP4 format, are categorized by dancer gender, dance type, and camera angle, offering researchers a rich, multifaceted tool for exploring this traditional art form.
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- 2024
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9. Sorting Lists with Equal Keys Using Mergesort in Linear Time
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Tedja, Albert
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Computer Science - Data Structures and Algorithms - Abstract
This article introduces a new optimization method to improve mergesort's runtime complexity, when sorting sequences that have equal keys to $O(n log_2 k)$, where $k$ is the number of distinct keys in the sequence. When $k$ is constant, it is evident that mergesort is capable of achieving linear time by utilizing linked lists as its underlying data structure. Mergesort linked list implementations can be optimized by introducing a new mechanism to group elements with equal keys together, thus allowing merge algorithm to achieve linear time.
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- 2020
10. The relationship between clinical phenotype and kallikrein-kinin bioregulation in different forms of arthritis
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Tan, Dino B. A., Tedja, Chantalia, Kuster, Lukas, Raymond, Warren D., Harsanyi, Andreea, Chowalloor, Priya V., Misso, Neil L., Argawal, Shashi, Bhoola, Kanti D., and Keen, Helen I.
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- 2023
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11. Rare variant analyses across multiethnic cohorts identify novel genes for refractive error
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Musolf, Anthony M., Haarman, Annechien E. G., Luben, Robert N., Ong, Jue-Sheng, Patasova, Karina, Trapero, Rolando Hernandez, Marsh, Joseph, Jain, Ishika, Jain, Riya, Wang, Paul Zhiping, Lewis, Deyana D., Tedja, Milly S., Iglesias, Adriana I., Li, Hengtong, Cowan, Cameron S., Biino, Ginevra, Klein, Alison P., Duggal, Priya, Mackey, David A., Hayward, Caroline, Haller, Toomas, Metspalu, Andres, Wedenoja, Juho, Pärssinen, Olavi, Cheng, Ching-Yu, Saw, Seang-Mei, Stambolian, Dwight, Hysi, Pirro G., Khawaja, Anthony P., Vitart, Veronique, Hammond, Christopher J., van Duijn, Cornelia M., Verhoeven, Virginie J. M., Klaver, Caroline C. W., and Bailey-Wilson, Joan E.
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- 2023
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12. Identification of Rare Variants Involved in High Myopia Unraveled by Whole Genome Sequencing
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Haarman, Annechien E.G., Klaver, Caroline C.W., Tedja, Milly S., Roosing, Susanne, Astuti, Galuh, Gilissen, Christian, Hoefsloot, Lies H., van Tienhoven, Marianne, Brands, Tom, Magielsen, Frank J., Eussen, Bert H.J.F.M.M., de Klein, Annelies, Brosens, Erwin, and Verhoeven, Virginie J.M.
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- 2023
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13. IMI 2021 Yearly Digest.
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Jong, Monica, Jonas, Jost, Wolffsohn, James, Berntsen, David, Cho, Pauline, Clarkson-Townsend, Danielle, Flitcroft, Daniel, Gifford, Kate, Haarman, Annechien, Pardue, Machelle, Richdale, Kathryn, Sankaridurg, Padmaja, Tedja, Milly, Wildsoet, Christine, Bailey-Wilson, Joan, Guggenheim, Jeremy, Hammond, Christopher, Kaprio, Jaakko, MacGregor, Stuart, Mackey, David, Musolf, Anthony, Klaver, Caroline, Verhoeven, Virginie, Vitart, Veronique, and Smith, Earl
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Disease Progression ,Humans ,Myopia ,Orthokeratologic Procedures ,Quality of Life ,Refraction ,Ocular - Abstract
PURPOSE: The International Myopia Institute (IMI) Yearly Digest highlights new research considered to be of importance since the publication of the first series of IMI white papers. METHODS: A literature search was conducted for articles on myopia between 2019 and mid-2020 to inform definitions and classifications, experimental models, genetics, interventions, clinical trials, and clinical management. Conference abstracts from key meetings in the same period were also considered. RESULTS: One thousand articles on myopia have been published between 2019 and mid-2020. Key advances include the use of the definition of premyopia in studies currently under way to test interventions in myopia, new definitions in the field of pathologic myopia, the role of new pharmacologic treatments in experimental models such as intraocular pressure-lowering latanoprost, a large meta-analysis of refractive error identifying 336 new genetic loci, new clinical interventions such as the defocus incorporated multisegment spectacles and combination therapy with low-dose atropine and orthokeratology (OK), normative standards in refractive error, the ethical dilemma of a placebo control group when myopia control treatments are established, reporting the physical metric of myopia reduction versus a percentage reduction, comparison of the risk of pediatric OK wear with risk of vision impairment in myopia, the justification of preventing myopic and axial length increase versus quality of life, and future vision loss. CONCLUSIONS: Large amounts of research in myopia have been published since the IMI 2019 white papers were released. The yearly digest serves to highlight the latest research and advances in myopia.
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- 2021
14. Antifungal activity of protein hydrolysates from Thai Phatthalung Sangyod rice (Oryza sativa L.) seeds
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Juthatip Jeenkeawpieam, Prawit Rodjan, Sittiruk Roytrakul, Kritsada Pruksaphon, Watcharapong Mitsuwan, Noppharat Tanthanathipchai, Chaiwat Boonkaewwan, Irma Tedja, and Monsicha Pongpom
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antifungal peptide ,oryza sativa l. ,phatthalung sangyod rice ,protein hydrolysate ,thai rice seed ,zoonoses ,Animal culture ,SF1-1100 ,Veterinary medicine ,SF600-1100 - Abstract
Background and Aim: Fungal zoonoses are an economic and public health concern because they can cause various degrees of morbidity and mortality in animals and humans. To combat this issue, alternative natural antifungals, such as products derived from rice protein hydrolysates or rice antifungal protein/peptide are being considered because they are highly bioactive and exhibit various functional properties. Thailand is a leading rice producer and exporter. Among the various cultivated rice varieties, Sangyod rice (Oryza sativa L.) is exclusively indigenous to Thailand’s Phatthalung province; it has a Thai geographical indication tag. Here, we investigated whether the Phatthalung Sangyod rice seeds have bioactive antifungal peptides. Materials and Methods: Antifungal activity in four Sangyod rice seed extracts (SYPs) – namely, (1) the crude lysate, SYP1; (2) the heat-treated lysate, SYP2; (3) the heat- and pepsin digested lysate, SYP3; and (4) the heat- and proteinase K-digested lysate, SYP4 – was analyzed. Protein concentrations in these SYPs were determined using the Bradford assay. The total phenolic compound content was determined using the modified Folin–Ciocalteu method in a 96-well microplate. Then, the SYP protein pattern was determined using the sodium dodecyl sulfate-polyacrylamide gel electrophoresis. Subsequently, using the agar well diffusion method, the antifungal properties of these SYPs were tested against ten medically important pathogenic fungi. The minimal inhibitory concentration (MIC) and minimal fungicidal concentration values were determined for the active SYPs – SYP2-4. Finally, the clinical safety of SYP4 was determined using a hemolytic assay (using canine red blood cells [RBCs]). Results: The crude lysate SYP1 did not show antifungal activity against any of the ten tested pathogenic fungi. Surprisingly, hydrolysates SYP2, SYP3, and SYP4 displayed antifungal properties against the ten tested pathogenic fungi. Thus, heat and enzymatic hydrolysis seem to transform the bioactivity of the crude protein extract – SYP1. Further, SYP4 shows the most effective antifungal activity. It completely inhibited Cryptococcus neoformans, Talaromyces marneffei yeast phase, Trichophyton mentagrophytes, and Trichophyton rubrum. A partial inhibitory action on Candida albicans and Microsporum gypseum was possessed while showing the least activity to C. neoformans. SYP4 was nontoxic to canine RBCs. Hemolysis of canine RBCs was undetectable at 1 × MIC and 2 × MIC concentrations; therefore, it can be safely used in further applications. Conclusion: These results indicate that heat and proteinase K hydrolyzed SYP is a very potent antifungal preparation against animal and human fungal pathogens and it can be used in future pharmaceuticals and functional foods.
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- 2023
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15. The Heat Resistant Capabilities of Bioplastic Composites on Sago Hampas Starch-Al2O3
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Afra Najiyah Amatullah, Tetty Kemala, and Tun Tedja Irawadi
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bioplastic ,al2o3 ,starch ,sago hampas ,Chemical engineering ,TP155-156 - Abstract
Sago hampas are a waste with a high starch content. The starch from sago hampas can be used as a raw material for bioplastics. However, because bioplastics have a lower heat resistance than conventional plastics, additives are required to increase heat resistance. Aluminum oxide can be used as a metal compound that acts as an additive to increase heat resistance. Bioplastics were created using a weight percentage of 0, 1, 3, and 5% Al2O3. DTA was used to determine the melting point of bioplastics, as well as their mechanical properties, density, and water resistance. The best results were identified using FTIR and SEM. The results showed that adding Al2O3 at 1, 3, and 5% increased the heat resistance of bioplastics with melting points of 270, 274, and 280 oC. Except for mechanical properties, the best results were obtained with a melting point of 280 oC, tensile strength of 3.41 Mpa, elongation of 38.66%, density of 5.52 g cm-3, and 80.28% water resistance for bioplastics with 5% Al2O3 that suitable on Indonesian National Standard 7188.7:2016. The FTIR analysis revealed that bioplastics containing Al2O3 experienced physical interactions. Morphological analysis revealed that Al2O3 was evenly distributed on the bioplastic's surface.
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- 2023
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16. Candida auris uses metabolic strategies to escape and kill macrophages while avoiding robust activation of the NLRP3 inflammasome response
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Weerasinghe, Harshini, Simm, Claudia, Djajawi, Tirta Mario, Tedja, Irma, Lo, Tricia L., Simpson, Daniel S., Shasha, David, Mizrahi, Naama, Olivier, Françios A.B., Speir, Mary, Lawlor, Kate E., Ben-Ami, Ronen, and Traven, Ana
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- 2023
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17. A new polygenic score for refractive error improves detection of children at risk of high myopia but not the prediction of those at risk of myopic macular degeneration
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Bailey-Wilson, Joan E., Baird, Paul N., Barathi, Veluchamy A., Biino, Ginevra, Burdon, Kathryn P., Campbell, Harry, Chen, Li Jia, Cheng, Ching-Yu, Chew, Emily Y., Craig, Jamie E., Deangelis, Margaret M., Delcourt, Cécile, Ding, Xiaohu, Fan, Qiao, Fossarello, Maurizio, Foster, Paul J., Gharahkhani, Puya, Guggenheim, Jeremy A., Guo, Xiaobo, Haarman, Annechien E.G., Haller, Toomas, Hammond, Christopher J., Han, Xikun, Hayward, Caroline, He, Mingguang, Hewitt, Alex W., Hoang, Quan, Hysi, Pirro G., Iglesias, Adriana I., Igo, Robert P., Iyengar, Sudha K., Jonas, Jost B., Kähönen, Mika, Kaprio, Jaakko, Khawaja, Anthony P., Klein, Barbara E., Lass, Jonathan H., Lee, Kris, Lehtimäki, Terho, Lewis, Deyana, Li, Qing, Li, Shi-Ming, Lyytikäinen, Leo-Pekka, MacGregor, Stuart, Mackey, David A., Martin, Nicholas G., Meguro, Akira, Metspalu, Andres, Middlebrooks, Candace, Miyake, Masahiro, Mizuki, Nobuhisa, Musolf, Anthony, Nickels, Stefan, Oexle, Konrad, Pang, Chi Pui, Pärssinen, Olavi, Paterson, Andrew D., Pfeiffer, Norbert, Polasek, Ozren, Rahi, Jugnoo S., Raitakari, Olli, Rudan, Igor, Sahebjada, Srujana, Saw, Seang-Mei, Simpson, Claire L., Stambolian, Dwight, Tai, E-Shyong, Tedja, Milly S., Tideman, J. Willem L., Tsujikawa, Akitaka, van Duijn, Cornelia M., Verhoeven, Virginie J.M., Vitart, Veronique, Wang, Ningli, Wang, Ya Xing, Wedenoja, Juho, Wei, Wen Bin, Williams, Cathy, Williams, Katie M., Wilson, James F., Wojciechowski, Robert, Yam, Jason C.S., Yamashiro, Kenji, Yap, Maurice K.H., Yazar, Seyhan, Yip, Shea Ping, Young, Terri L., Zhou, Xiangtian, Allen, Naomi, Aslam, Tariq, Atan, Denize, Barman, Sarah, Barrett, Jenny, Bishop, Paul, Black, Graeme, Bunce, Catey, Carare, Roxana, Chakravarthy, Usha, Chan, Michelle, Chua, Sharon, Cipriani, Valentina, Day, Alexander, Desai, Parul, Dhillon, Bal, Dick, Andrew, Doney, Alexander, Egan, Cathy, Ennis, Sarah, Foster, Paul, Fruttiger, Marcus, Gallacher, John, Garway-Heath, David, Gibson, Jane, Gore, Dan, Guggenheim, Jeremy, Hammond, Chris, Hardcastle, Alison, Harding, Simon, Hogg, Ruth, Hysi, Pirro, Keane, Pearse A., Khaw, Peng Tee, Khawaja, Anthony, Lascaratos, Gerassimos, Littlejohns, Thomas, Lotery, Andrew, Luthert, Phil, MacGillivray, Tom, Mackie, Sarah, McGuinness, Bernadette, McKay, Gareth, McKibbin, Martin, Mitry, Danny, Moore, Tony, Morgan, James, Muthy, Zaynah, O'Sullivan, Eoin, Owen, Chris, Patel, Praveen, Paterson, Euan, Peto, Tunde, Petzold, Axel, Pontikos, Nikolas, Rahi, Jugnoo, Rudnicka, Alicja, Self, Jay, Sergouniotis, Panagiotis, Sivaprasad, Sobha, Steel, David, Stratton, Irene, Strouthidis, Nicholas, Sudlow, Cathie, Tapp, Robyn, Thaung, Caroline, Thomas, Dhanes, Trucco, Emanuele, Tufail, Adnan, Vernon, Stephen, Viswanathan, Ananth, Williams, Katie, Woodside, Jayne, Yates, Max, Yip, Jennifer, Zheng, Yalin, Clark, Rosie, Lee, Samantha Sze-Yee, Du, Ran, Wang, Yining, Kneepkens, Sander C.M., Charng, Jason, Huang, Yu, Hunter, Michael L., Jiang, Chen, Tideman, J.Willem L., Melles, Ronald B., Klaver, Caroline C.W., Choquet, Hélène, and Ohno-Matsui, Kyoko
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- 2023
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18. MNRR1 is a driver of ovarian cancer progression
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Chehade, Hussein, Purandare, Neeraja, Fox, Alexandra, Adzibolosu, Nicholas, Jayee, Shawn, Singh, Aryan, Tedja, Roslyn, Gogoi, Radhika, Aras, Siddhesh, Grossman, Lawrence I., Mor, Gil, and Alvero, Ayesha B.
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- 2023
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19. Risk Factors and Incidence of Escherichia coli Producing Extended-spectrum β-lactamase (ESBL) in Dairy Cattle
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Fidi Nur Aini Eka Puji Dameanti, Muhammad Ali Akramsyah, Chyntia Silvi Yanti Hasan, Jacky Teguh Amanda, Alfaro Rikko Pratama, Reza Fahmiantika, Dhaneswara Tedja, Safira Izofani, and Rahayu Sutrisno
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antibiotics ,dairy cattle ,escherichia coli ,extended-spectrum beta-lactamase ,milk ,Veterinary medicine ,SF600-1100 - Abstract
This study aimed to evaluate the risk factor and insidence of Extended-spectrum b-lactamase (ESBL) produced by Escherichia coli in dairy cattle. The samples obtained were 38 rectal swabs from dairy cows from the Successful Mutual Livestock Group, Deyeng Village, Kediri Regency, East Java. The study started with interviews and observations using a questionnaire to obtain data on risk factors (source of drinking water, cleanliness of feedlots, cleanliness of drinking places, administration of antibiotics, history of mastitis). A sampling of the rectal swab of cattle was carried out using Nutrient Broth as carrier media. Isolation of bacteria using Mac Conkey Agar (MCA) media with the antibiotic cefotaxime 1 mg/L. The addition of antibiotics is intended so that the bacteria that grow are coliform bacteria resistant to the cefotaxime antibiotic, a beta-lactam group. Bacterial isolation was continued with MCA media to enrich ESBL bacteria. Bacterial identification was continued on EMBA media, gram staining, IMViC biochemical test, TSIA, and urease to obtain isolates of E. coli bacteria. The E. coli isolates tested for ESBL Double Disc Synergy Test (DDST) phenotype. The close relationship between each risk factor and the incidence of ESBL-producing E. coli was tested statistically using the Spearman Rank correlation test. The results showed that the incidence of ESBL-producing E. coli in the tested samples was 21.05%, or there were eight positive samples of ESBL-producing E. coli. The risk factors for finding a positive incidence of E. coli producing ESBL in this study were 87% of the use of drinking water sources from wells, 25% did not pay attention to the cleanliness of drinking places, 25% did not pay attention to the cleanliness of eating places, 38% were given antibiotics during maintenance, and 100% had a history of mastitis. These risk factors were not statistically closely related to the incidence of ESBL-producing E. coli.
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- 2022
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20. Immunological modifications following chemotherapy are associated with delayed recurrence of ovarian cancer
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Nicholas Adzibolosu, Ayesha B. Alvero, Rouba Ali-Fehmi, Radhika Gogoi, Logan Corey, Roslyn Tedja, Hussein Chehade, Vir Gogoi, Robert Morris, Matthew Anderson, Julie Vitko, Clarissa Lam, Douglas B. Craig, Sorin Draghici, Thomas Rutherford, and Gil Mor
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ovarian cancer ,chemoresistance ,cold tumors ,hot tumors ,immune response ,Immunologic diseases. Allergy ,RC581-607 - Abstract
IntroductionOvarian cancer recurs in most High Grade Serous Ovarian Cancer (HGSOC) patients, including initial responders, after standard of care. To improve patient survival, we need to identify and understand the factors contributing to early or late recurrence and therapeutically target these mechanisms. We hypothesized that in HGSOC, the response to chemotherapy is associated with a specific gene expression signature determined by the tumor microenvironment. In this study, we sought to determine the differences in gene expression and the tumor immune microenvironment between patients who show early recurrence (within 6 months) compared to those who show late recurrence following chemotherapy.MethodsPaired tumor samples were obtained before and after Carboplatin and Taxol chemotherapy from 24 patients with HGSOC. Bioinformatic transcriptomic analysis was performed on the tumor samples to determine the gene expression signature associated with differences in recurrence pattern. Gene Ontology and Pathway analysis was performed using AdvaitaBio’s iPathwayGuide software. Tumor immune cell fractions were imputed using CIBERSORTx. Results were compared between late recurrence and early recurrence patients, and between paired pre-chemotherapy and post-chemotherapy samples.ResultsThere was no statistically significant difference between early recurrence or late recurrence ovarian tumors pre-chemotherapy. However, chemotherapy induced significant immunological changes in tumors from late recurrence patients but had no impact on tumors from early recurrence patients. The key immunological change induced by chemotherapy in late recurrence patients was the reversal of pro-tumor immune signature.DiscussionWe report for the first time, the association between immunological modifications in response to chemotherapy and the time of recurrence. Our findings provide novel opportunities to ultimately improve ovarian cancer patient survival.
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- 2023
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21. Competence, Innovative Work Behavior, dan Opportunity Motive pada Pengusaha Clothing Line Berbasis Online
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Sesilya Kempa and Tiffani Aurelia Tedja Kusuma
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competence ,opportunity motive ,innovative work behavior ,clothing line ,Business ,HF5001-6182 - Abstract
Bisnis clothing line berbasis online banyak digeluti generasi milenial yang membutuhkan perilaku kerja inovatif. Tujuan dari penelitian ini adalah untuk mengetahui pengaruh competence terhadap innovative work behavior melalui opportunity motive. Jenis penelitian yang digunakan dalam penelitian ini adalah kuantitatif dan menggunakan Partial Least Square sebagai teknik analisis data. Ukuran sampel yang digunakan adalah sebanyak 100 orang pengusaha clothing line khususnya Instagram yang bisnisnya telah beroperasi minimal selama 1 tahun. Teknik pengambilan sampel yang digunakan dalam penelitian ini adalah teknik purposive sampling. Hasil penelitian menunjukkan bahwa competence dan opportunity motive memiliki pengaruh signifikan positif terhadap innovative work behavior pengusaha clothing line. Selain itu, opportunity motive secara signifikan positif memediasi pengaruh competence terhadap innovative work behavior.
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- 2022
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22. Analisis Pengaruh Perkembangan Identitas Terhadap Intensi Turnover Dengan Mediasi Komitmen Karier Pada Karyawan Milenial Jabodetabek
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Timothy Tedja and Rosdiana Sijabat
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Business ,HF5001-6182 ,Management. Industrial management ,HD28-70 - Abstract
Tujuan penelitian ini adalah untuk mengetahui: 1) Pengaruh keberhasilan perkembangan identitas terhadap identitas karier, 2) perencanaan karier, dan 3) resiliensi karier, 4) Pengaruh identitas karier, 5) perencanaan karier, dan 6) resiliensi terhadap intensi turnover, 7) Pengaruh keberhasilan perkembangan identitas terhadap intensi turnover, serta pengaruh keberhasilan perkembangan identitas terhadap intensi turnover dengan (8) identitas karier, (9) perencanaan karier, dan (10) resiliensi karier sebagai mediasi. Responden diperoleh dengan metode sampling insidential. Penemuan dari riset ini adalah keberhasilan perkembangan identitas memiliki pengaruh positif terhadap identitas karier, perencanaan karier, dan resiliensi karier. Perencanaan karier dan resiliensi karier memiliki pengaruh positif terhadap intensi turnover. Keberhasilan perkembangan identitas memiliki pengaruh positif terhadap intensi turnover dengan mediasi perencanaan karier dan resiliensi karier. Kontribusi dari riset ini dapat memberikan masukan bagi organisasi-organisasi yang ada di Jabodetabek untuk mengurangi intensi turnover.
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- 2021
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23. The COVID-19 pandemic impact on pediatric surgery residency programs
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Gunadi, Balela, Naisya, Kalim, Alvin Santoso, Widitjiarso, William, Fahri, Fadil, Tedja, Audric Kenny, Purnomo, Eko, Dwihantoro, Andi, Agustriani, Nunik, and Makhmudi, Akhmad
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- 2021
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24. A matheuristic algorithm for the vehicle routing problem with cross-docking
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Gunawan, Aldy, Widjaja, Audrey Tedja, Vansteenwegen, Pieter, and Yu, Vincent F.
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- 2021
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25. Nanocellulose coated paper diagnostic to measure glucose concentration in human blood
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Laila Hossain, Marisa De Francesco, Patricia Tedja, Joanne Tanner, and Gil Garnier
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nanocellulose ,paper ,enzyme ,glucose oxidase ,glucose sensor ,diagnostic ,Biotechnology ,TP248.13-248.65 - Abstract
A new generation of rapid, easy to use and robust colorimetric point of care (POC) nanocellulose coated-paper sensors to measure glucose concentration in blood is presented in this study. The cellulose gel containing the enzyme with co-additive is coated and dried onto a paper substrate. Nanocellulose gel is used to store, immobilize and stabilize enzymes within its structure to prolong enzyme function and enhance its availability. Here, we immobilize glucose oxidase within the gel structure to produce a simple colorimetric blood glucose sensor. Increase in blood glucose concentration increases the concentration of reaction product which decreases the system pH detected by the pH indicative dye entrapped in the nanocellulose gel. The sensor produces a color change from red to orange as pH decreases due to the enzymatic reaction of glucose into gluconic acid and hydrogen peroxide. This sensor can measure glucose concentrations of 7–13 mM (medical range for diabetes control) at temperatures of 4°C–40°C. Stability tests confirm that no denaturation of enzyme occurs by measuring enzyme activity after 4 weeks. A prototype device is designed to instantly measure the glucose concentration from blood in a two steps process: 1) red blood cell separation and 2) quantification of glucose by color change. This study demonstrates nanocellulose sensor as an economical, robust, and sensitive diagnostic technology platform for a broad spectrum of diseases.
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- 2022
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26. The Genetics of Myopia
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Tedja, Milly S., Haarman, Annechien E. G., Meester-Smoor, Magda A., Verhoeven, Virginie J. M., Klaver, Caroline C. W., MacGregor, Stuart, Ang, Marcus, editor, and Wong, Tien Y., editor
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- 2020
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27. Diagnostic Accuracy of Ultrasound in Cholestatic Infants with Biliary Atresia.
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Arsena, Hermis, Tedja, Audric Kenny, Gunarti, Hesti, Leksono, Tiara Putri, Latifanisa Kuncoro, Afina Azka, Amaragati, Adisrasti Rejeki, Makhmudi, Akhmad, and Gunadi
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PREDICTIVE tests ,BIOPSY ,BILIARY atresia ,GALLBLADDER ,ULTRASONIC imaging ,RETROSPECTIVE studies ,CHI-squared test ,DESCRIPTIVE statistics ,CHOLECYSTECTOMY ,RESEARCH ,MEDICAL records ,ACQUISITION of data ,EARLY diagnosis ,LIVER ,CHOLESTASIS ,SENSITIVITY & specificity (Statistics) ,DISEASE complications ,CHILDREN - Abstract
Objective: Biliary atresia (BA) is an obstructive cholangiopathy that involves the intrahepatic and extrahepatic bile ducts. Ultrasound (US) can aid in evaluation of the biliary system and be efficiently used in daily practice. However, most studies on US for diagnosing BA have been conducted in developed countries. Therefore, we have aimed to evaluate the diagnostic accuracy of US in BA in infants with cholestasis from a developing country. Materials and Methods: This retrospective study used data collected from our hospital medical records. The US findings were compared with the gold standard intraoperative or cholangiography findings. Results: Thirty-five BA patients (19 males and 16 females) and 36 controls (20 males and 16 females) were included in the study. Most of the patients (85.7%) were ≤ 6 months old. The absence of a gallbladder demonstrated 71.42% sensitivity (Sn), 91.67% specificity (Sp), 89.29% positive predictive value (PPV), 76.74% negative predictive value (NPV), 8.57 positive likelihood ratio (LR+), and 0.31 negative likelihood ratio (LR−) for diagnosing BA. The triangular cord sign demonstrated 14.28% Sn, 100% Sp, 100% PPV, 76.74% NPV, ∞ LR+, and 0.86 LR- for diagnosing BA. The combination of gallbladder absence and a positive triangular cord sign demonstrated 82.85% Sn, 91.67% Sp, 90.63% PPV, 84.61% NPV, 9.95 LR+, and 0.19 LR− for diagnosing BA. Conclusion: The diagnostic accuracy of US in BA is high, indicating that it can be the imaging tool of choice in infants with cholestasis. Ultrasound is safe and can be easily used in daily practice without the risk of radiation exposure. [ABSTRACT FROM AUTHOR]
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- 2024
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28. Isolation and Characterization of Cellulose from Banana Stems using Microwave Heating
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Inda Iliyin, Henny Purwaningsih, and Tun Tedja Irawadi
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banana stem ,microwave ,cellulose ,Chemistry ,QD1-999 - Abstract
During each day of harvest, wasted banana stems are obtained in large quantities. These stems are composed mainly of 74.37% cellulose which is a very important raw material. This study aims to isolate cellulose from banana stems using liquefaction, delignification and bleaching processes with a microwave at power variations of 450, 600 and 800 W. The results showed that the highest cellulose content of 86.43% was obtained at 800 W for 14 minutes. Meanwhile, the fourier-transform infrared spectroscopy (FTIR) analysis result did not show a peak at wavenumber 1519 cm-1 which is the specific peak for lignin but showed a peak for cellulose at wavenumber 898 cm-1. Furthermore, XRD analysis of crystallinity showed a typical diffraction peak of cellulose at 22.5o with a degree of crystallinity of 56.8% while, morphological analysis with SEM showed that the sizes of the cellulose fibers produced varied, ranging from 5 to hundreds of micrometers and visible fibrillary fibers
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- 2021
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29. Common variants in SOX-2 and congenital cataract genes contribute to age-related nuclear cataract
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Ekaterina Yonova-Doing, Wanting Zhao, Robert P. Igo, Chaolong Wang, Periasamy Sundaresan, Kristine E. Lee, Gyungah R. Jun, Alexessander Couto Alves, Xiaoran Chai, Anita S. Y. Chan, Mei Chin Lee, Allan Fong, Ava G. Tan, Chiea Chuen Khor, Emily Y. Chew, Pirro G. Hysi, Qiao Fan, Jacqueline Chua, Jaeyoon Chung, Jiemin Liao, Johanna M. Colijn, Kathryn P. Burdon, Lars G. Fritsche, Maria K. Swift, Maryam H. Hilmy, Miao Ling Chee, Milly Tedja, Pieter W. M. Bonnemaijer, Preeti Gupta, Queenie S. Tan, Zheng Li, Eranga N. Vithana, Ravilla D. Ravindran, Soon-Phaik Chee, Yuan Shi, Wenting Liu, Xinyi Su, Xueling Sim, Yang Shen, Ya Xing Wang, Hengtong Li, Yih-Chung Tham, Yik Ying Teo, Tin Aung, Kerrin S. Small, Paul Mitchell, Jost B. Jonas, Tien Yin Wong, Astrid E. Fletcher, Caroline C. W. Klaver, Barbara E. K. Klein, Jie Jin Wang, Sudha K. Iyengar, Christopher J. Hammond, and Ching-Yu Cheng
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Biology (General) ,QH301-705.5 - Abstract
Here, the authors report a multi-ethnic genome wide association meta-analysis of 12 studies from the International Cataract Genetics Consortium. They find six new loci associated with age-related nuclear cataract, in addition to replicating the association at CRYAA, and suggest a strong genetic link between age-related nuclear and congenital cataracts.
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- 2020
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30. KOLABORASI PENELITI DI ERA TEKNOLOGI INFORMASI DAN KOMUNIKASI
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Jack Febrian Rusdi, Tedja Gurat Baktina, R Gumilar Hadiningrat, Budi Sunaryo, Puteri Fannya, and Fretycia Laurenty
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teknologi informasi dan komunikasi ,kolaborasi peneliti ,kinerja dosen ,penelitian ,Bibliography. Library science. Information resources - Abstract
Advances in information and communication technology have an impact on the increasing number of scientific publications in the world. Scientific papers are indicators of a country's progress in the academic field. One strategy used to improve the quality of research is to collaborate with researchers. There is not much research that addresses the collaboration of researchers. This article provides an overview of the cooperation of researchers including the background of the partnership, as well as aspects that influence the teamwork of researchers, especially in the era of acceleration of information and communication technology. The method used is the study of literature. Reviews aim as the basis for assessing research productivity, especially in Indonesia.
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- 2020
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31. Review for State-of-the-Art Health Monitoring Technologies on Airframe Fuel Pumps
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Tedja Verhulst, David Judt, Craig Lawson, Yongmann Chung, Osama Al-Tayawe, and Geoff Ward
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wear ,health monitoring ,condition monitoring ,cavitation ,fault ,motor ,centrifugal pump ,hydraulic pump ,Engineering machinery, tools, and implements ,TA213-215 ,Systems engineering ,TA168 - Abstract
Aircraft maintenance is an essential cost borne by the airline. Improving maintenance practices for day-to-day operations can lead to significant financial savings. The benefits of effective maintenance are derived from the avoided costs caused by unexpected breakdowns and from maximising aircraft flight time transporting passengers. The fuel system is a crucial part of the entire aircraft as it ensures delivery of the fuel to the engine and a key component within this system are the fuel pumps. These airborne fuel pumps are classified between the pumps installed in the airframe fuel system and in the engine fuel system. Past works have investigated the performance characteristics of these pumps during flight, however there are no reviews related to the present Health Monitoring (HM) capabilities under flight conditions. HM refers to the field of diagnosing faults or predicting the remaining useful life (RUL) of the pump and the focus of this review is to highlight the HM technologies suitable for aircraft fuel pumps. This is done by first reviewing the technologies and concepts related to HM of fuel pumps. Second a literature review is carried out on pump and motor faults is carried out, drawing on examples from aerospace and other relevant industries. Section 6: Conclusion, discusses the HM technologies have been applied to aerospace fuel pumps and highlights the gaps in capabilities, based on the findings of the literature review carried out in Section 4: Common Faults and Section 5: HM Sensing Methods to suggest future developments in this field. It was found that there is a large scope for development for the HM airframe fuel pumps, based on reviewing the present state of the art. Furthermore, there are no clear strategies formulated by airframe manufacturers and equipment suppliers to test and implement existing HM solutions to operate under flight conditions. This highlights the need to develop HM in this field and a requirement for further research to allow this technology to be a part of routine aircraft
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- 2022
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32. Protein kinase Cα–mediated phosphorylation of Twist1 at Ser-144 prevents Twist1 ubiquitination and stabilizes it
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Tedja, Roslyn, Roberts, Cai M., Alvero, Ayesha B., Cardenas, Carlos, Yang-Hartwich, Yang, Spadinger, Sydney, Pitruzzello, Mary, Yin, Gang, Glackin, Carlotta A., and Mor, Gil
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- 2019
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33. Optimization of brewing time and temperature for caffeine and tannin levels in Dampit coffee leaf tea of Robusta (Coffea canephora) and Liberica (Coffea liberica)
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Dewi Melani Hariyadi, Cynthia Amelia Tedja, Elok Zubaidah, Sudarminto Setyo Yuwono, and Kiki Fibrianto
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caffeine ,tannin ,robusta ,liberica ,coffee leaf tea ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Coffee constitutes a plant product high in economic value. Extremely abundant throughout Indonesia, different varieties can be found in each region. Coffee leaves represent a by-product of coffee production which are disposed of without being subjected to further processing. One advantage of coffee leaf waste is that it can be made into coffee leaf tea, to prevent various diseases. The caffeine and tannin content can be optimized by temperature and brewing time. Research on coffee leaf tea remains limited, with little study of Liberica coffee leaf tea. This investigation was to determine the optimal brewing time and temperature of Robusta (Coffea canephora) and Liberica (Coffea liberica) coffee leaf tea. This research used the Response Surface Methodology (RSM) method with Central Composite Design (CCD). Data analysis using RSM method was conducted incorporating two factors. The first factor was the brewing temperature with a minimum value of 91 °C and a maximum value of 99 °C. The second factor was brewing time with minimum and maximum values of three and seven minutes respectively. Identifying the optimal treatment was based on two factors, caffeine and tannin content. Optimized processes were applied to conduct organoleptic tests on 110 untrained panelists using the Rate-All-That-Apply (RATA) method to highlight the majority attributes experienced by the panelists. The optimal brewing temperature and duration for robusta coffee leaf tea were 93.43 °C and 4.80 minutes which produced caffeine and tannin levels of 74.90 mg.100mL-1 and 293.01 µg.g-1 respectively. In contrast, in the case of Liberica coffee leaf tea, the optimal brewing conditions comprised a temperature of 91.65 °C and duration of 4.84 minutes which produced caffeine and tannin levels of 72.52 mg.100mL-1 and 415.87 µg.g-1. Results of sensory analysis showed that the majority produced five significant characteristics, namely: sweet flavor, fire flavor, sweet taste, bitter taste and astringent mouthfeel.
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- 2020
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34. Adipose microenvironment promotes hypersialylation of ovarian cancer cells.
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Fox, Alexandra, Leonard, Garry D., Adzibolosu, Nicholas, Wong, Terrence, Tedja, Roslyn, Sharma, Sapna, Gogoi, Radhika, Morris, Robert, Mor, Gil, Fehl, Charlie, and Alvero, Ayesha B.
- Subjects
CHEMICAL biology ,ADIPOSE tissues ,SIALIC acids ,POLYMERASE chain reaction ,OVARIAN cancer - Abstract
Introduction: Ovarian and other peritoneal cancers have a strong tendency to metastasize into the surrounding adipose tissue. This study describes an effect of the adipose microenvironment on upregulation of sialic acid-containing glycans in ovarian cancer (OC). Heterogeneous populations of glycosylated OC tumors converged to a highly sialylated cell state that regulates tumorigenesis in an immune-dependent manner. Methods: We modeled the adipose microenvironment by conditioning growth media with human patient-derived adipose tissue. OC cell lines grown in the presence vs. absence of adipose conditioned media (ACM) were characterized by transcriptomics, western blotting, and chemical biology glycan labeling methods. Fluorescence-activated cell sorting was used to separate adipose-driven upregulation of hypersialylated ("SNA-high") vs. hyposialylated ("SNA-low") OC subpopulations. The two subpopulations were characterized by further transcriptomic and quantitative polymerase chain reaction analyses, then injected into a syngeneic mouse model. Immune system involvement was implicated using wild type and athymic nude mice with a primary endpoint of overall survival. Results: Adipose conditioning resulted in upregulation of sialyltransferases ST3GAL1, ST6GAL1, ST6GALNAC3, and ST8Sia1. In culture, OC cells displayed two distinct sialylated subpopulations that were stable for up to 9 passages, suggesting inherent heterogeneity in sialylation that is maintained throughout cell division and media changes. OC tumors that implanted in the omental adipose tissue exclusively reprogrammed to the highly sialylated subpopulation. In wild type C57BL/6 mice, only the hypersialylated SNA-high subpopulation implanted in the adipose, whereas the hyposialylated SNA-low subpopulation failed to be tumorigenic (p=0.023, n=5). In the single case where SNA-low established a tumor, post-mortem analysis revealed reprogramming of the tumor to the SNA-high state in vivo. In athymic nude mice, both subpopulations rapidly formed tumors, implicating a role of the adaptive immune system. Conclusions: These findings suggest a model of glycan-dependent tumor evolution wherein the adipose microenvironment reprograms OC to a tumorigenic state that resists the adaptive immune system. Mechanistically, adipose factors upregulate sialyltransferases. To our knowledge, this is the first demonstration of the effect of adipose microenvironment on OC tumor sialylation. Our results set the stage for translational applications targeting sialic acid pathways in OC and other peritoneal cancer tumorigenesis and metastasis. [ABSTRACT FROM AUTHOR]
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- 2024
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35. STABILITAS EDIBLE FILM PATI SAGU (METROXYLON SAGU ROTTB.) ASETAT SELAMA PENYIMPANAN PADA BERBAGAI SUHU
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Rosniyati Suwarda, Tun Tedja Irawadi, Prayoga Suryadarma, and Indah Yuliasih
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edible film ,mechanical and physical properties ,sago starch acetate ,water vapor transmission rate ,Agricultural industries ,HD9000-9495 - Abstract
The degree of stability of starch-based edible films during storage varies greatly compared to synthetic films. This work aimed to study the effect of storage temperatures on the stability of sago starch acetate edible film during storage. Edible films produced by casting and storage at 5, 30 and 40 oC temperatures for 34 days. The observed characteristics were crystallinity, contact angle, physical, mechanical and barrier (WVTR) film properties. Sago starch acetate edible films presented lower relative crystallinity (10,10%) and highest contact angle (51,04o) when compared with native starch edible films. The results indicated that sago starch acetate edible films were relatively stable when stored at low (5 oC) and high (30 and 40 oC) temperatures. Storage temperatures did not affect physical properties (solubility, transparency) and mechanical (elongation at break / EAB) of sago starch acetate edible films except tensile strength (TS) and water vapor transmission rate (WVTR). TS values increased at temperatures 30 and 40 oC and WVTR values increased at temperature 30 oC. Changes in physical and mechanical properties occur at the beginning of storage, but then tend to be stable until the end of storage. Sago starch acetate edible films had low physical and mechanical characteristics, that was TS (2.25–4.90 MPa), elongation at break (29.65–89.62%), solubility (15.01–29.61%), transparency (0.91–1.87) and very low WVTR value (0.07–0.33 g/m2.hour) and Ea (-8.6E-04 kJ/mol). Sago starch acetate edible films had good physical and mechanical properties and resistant to moisture, can be used for applications as edible films and coatings for foods that contain high water content.
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- 2019
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36. Reaction Products of Crude Palm Oil-based Fatty Acids and Monoethanolamine as Corrosion Inhibitors of Carbon Steel
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Mohamad Makrus Ali, Tun Tedja Irawad, Noviyan Darmawan, Mohammad Khotib, and Zainal Alim Mas’ud
- Subjects
crude palm oil ,acid medium ,corrosion inhibitor ,fatty ester ,fatty amides ,Science (General) ,Q1-390 - Abstract
Herein we report the application of the reaction products of crude palm oil-based fatty acids and monoethanolamine as sustainable corrosion inhibitors in acidic environments for carbon steels. Reaction products were identified based on FTIR analysis as a mixture of 2-aminoethyl fatty esters and N-(2-hydroxyethyl) fatty amides. Corrosion inhibition effect of these compounds was evaluated by potentiodynamic polarization techniques in 0.5 M HCl. The mixture of fatty esters and fatty amides showed promising potential as an alternative corrosion inhibitor. Inhibition efficiency was found to be 80% at 80 ppm. Thermodynamic and kinetic parameters obtained from the tafel plot displayed an increase in activation energy with a higher inhibitor concentration that led to the decrease in the corrosion rate. Furthermore, physisorption interaction was found to be the main process of the inhibitor’s adsorption on metal surfaces and obeyed the adsorption model of the Langmuir isotherm.
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- 2019
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37. Identification of Rare Variants Involved in High Myopia Unraveled by Whole Genome Sequencing
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Annechien E.G. Haarman, Caroline C.W. Klaver, Milly S. Tedja, Susanne Roosing, Galuh Astuti, Christian Gilissen, Lies H. Hoefsloot, Marianne van Tienhoven, Tom Brands, Frank J. Magielsen, Bert H.J.F.M.M. Eussen, Annelies de Klein, Erwin Brosens, Virginie J.M. Verhoeven, Ophthalmology, Public Health, and Clinical Genetics
- Subjects
All institutes and research themes of the Radboud University Medical Center ,Metabolic Disorders Radboud Institute for Molecular Life Sciences [Radboudumc 6] ,General Medicine ,Sensory disorders Donders Center for Medical Neuroscience [Radboudumc 12] - Abstract
Contains fulltext : 293290.pdf (Publisher’s version ) (Open Access) PURPOSE: Myopia (nearsightedness) is a condition in which a refractive error (RE) affects vision. Although common variants explain part of the genetic predisposition (18%), most of the estimated 70% heritability is missing. Here, we investigate the contribution of rare genetic variation because this might explain more of the missing heritability in the more severe forms of myopia. In particular, high myopia can lead to blindness and has a tremendous impact on a patient and at the societal level. The exact molecular mechanisms behind this condition are not yet completely unraveled, but whole genome sequencing (WGS) studies have the potential to identify novel (rare) disease genes, explaining the high heritability. DESIGN: Cross-sectional study performed in the Netherlands. PARTICIPANTS: We investigated 159 European patients with high myopia (RE > -10 diopters). METHODS: We performed WGS using a stepwise filtering approach and burden analysis. The contribution of common variants was calculated as a genetic risk score (GRS). MAIN OUTCOME MEASURES: Rare variant burden, GRS. RESULTS: In 25% (n = 40) of these patients, there was a high (> 75th percentile) contribution of common predisposing variants; that is, these participants had higher GRSs. In 7 of the remaining 119 patients (6%), deleterious variants in genes associated with known (ocular) disorders, such as retinal dystrophy disease (prominin 1 [PROM1]) or ocular development (ATP binding cassette subfamily B member 6 [ABCB6], TGFB induced factor homeobox 1 [TGIF1]), were identified. Furthermore, without using a gene panel, we identified a high burden of rare variants in 8 novel genes associated with myopia. The genes heparan sulfate 6-O-sulfotransferase 1 (HS6ST1) (proportion in study population vs. the Genome Aggregation Database (GnomAD) 0.14 vs. 0.03, P = 4.22E-17), RNA binding motif protein 20 (RBM20) (0.15 vs. 0.06, P = 4.98E-05), and MAP7 domain containing 1 (MAP7D1) (0.19 vs. 0.06, P = 1.16E-10) were involved in the Wnt signaling cascade, melatonin degradation, and ocular development and showed most biologically plausible associations. CONCLUSIONS: We found different contributions of common and rare variants in low and high grade myopia. Using WGS, we identified some interesting candidate genes that could explain the high myopia phenotype in some patients. FINANCIAL DISCLOSURES: The author(s) have no proprietary or commercial interest in any materials discussed in this article. 01 december 2023
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- 2023
38. Pangasius Fish Skin and Swim Bladder as Gelatin Sources for Hard Capsule Material
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Mala Nurilmala, Noviyan Darmawan, Erin Apriliani Wulandari Putri, Agoes M. Jacoeb, and Tun Tedja Irawadi
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Biotechnology ,TP248.13-248.65 - Abstract
In this paper, we report the extraction and characterization of gelatin from the abundant industrial fishery waste of Pangasius skin and swim bladder and its application as the base material for hard capsule shells. The yield of gelatin ranged between 19 and 23%, content of moisture is 7.6–9.2%, ash is 1.1–1.7%, pH is 4.1–5.2, gel strength is 238–278 bloom, and viscosity is 65–74.7% mP. SDS-PAGE showed all gelatins have chains of α1, α2, and β-peptides. The skin, swim bladder, and mixed gelatins were successfully used in the production of hard capsule shells. The dimensions, weight, disintegration time, and water content properties of the hard capsules from these Pangasius wastes were akin to the standards of commercial capsules.
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- 2021
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39. Hydrotreating of Sunan Candlenut (Reutealis trisperma Airy Shaw) Oil by Using NiMo-γAl2O3 as Renewable Energy
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Daliya Indra Setiawan, Tun Tedja Irawadi, and Zainal Alim Mas’ud
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NiMo-γAl2O3 catalyst ,renewable diesel ,Sunan candlenut oil ,distillation ,Chemistry ,QD1-999 - Abstract
Hydrotreating process of Sunan candlenut oil by using NiMo-γAl2O3 catalyst has been successfully investigated. Preparation of NiMo-γAl2O3 catalyst by using dipping impregnation method generated catalyst used for hydrotreating process. This method consists of three stages: support activation, impregnation, and calcination. This factors influencing the process including temperature, pressure, and the ratio of Sunan candlenut oil to the H2 gas factor were examined. The hydrotreating product of fuel similar to oil was obtained at a minimum temperature of 380 °C, a pressure of 30–60 bar, and the ratio of the sample to H2 gas of 0.5–1. The diesel fuel from physical properties range for the density of 0.82–0.86 g/cm3, and kinematic viscosity of 2–6 cSt have been fulfilled by hydrotreating result. Gasoline, naphtha, diesel oil, and gas oil products of Sunan candlenut oil were obtained by distillation from hydrotreating process. Sunan candlenut oil fuel qualified fuel requirement.
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- 2019
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40. A unique aspartyl protease gene expansion in Talaromyces marneffei plays a role in growth inside host phagocytes
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Michael Payne, Harshini Weerasinghe, Irma Tedja, and Alex Andrianopoulos
- Subjects
talaromyces marneffei ,penicillium marneffei ,aspartyl protease ,evolution ,pathogenic fungi ,Infectious and parasitic diseases ,RC109-216 - Abstract
Aspartyl proteases are a widely represented class of proteolytic enzymes found in eukaryotes and retroviruses. They have been associated with pathogenicity in a range of disease-causing microorganisms. The dimorphic human-pathogenic fungus Talaromyces marneffei has a large expansion of these proteases identified through genomic analyses. Here we characterize the expansion of these genes (pop – paralogue of pep) and their role in T. marneffei using computational and molecular approaches. Many of the genes in this monophyletic family show copy number variation and positive selection despite the preservation of functional regions and possible redundancy. We show that the expression profile of these genes differs and some are expressed during intracellular growth in the host. Several of these proteins have distinctive localization as well as both additive and epistatic effects on the formation of yeast cells during macrophage infections. The data suggest that this is a recently evolved aspartyl protease gene family which affects intracellular growth and contributes to the pathogenicity of T. marneffei.
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- 2019
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41. A Hybrid Greedy Algorithm and Simulated Annealing for Single Container Loading Problem: A Case Study
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Gede A Widyadana, Audrey Tedja Widjaja, and Kun Jen Wang
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single container loading problem, greedy algorithm, simulated annealing ,Industrial engineering. Management engineering ,T55.4-60.8 - Abstract
A single container loading problem is a problem to effectively load boxes in a three-dimensional container. There are many researchers in this problem try to find the best solution to solve the problem with feasible computation time and to develop some models to solve real case problem. Heuristics are the most method used to solve this problem since the problem is an NP-hard. In this paper, we introduce a hybrid greedy algorithm and simulate annealing algorithm to solve a real container loading problem in one flexible packaging company in Indonesia. Validation is used to show that the method can be applied practically. We use seven real cases to check the validity and performance of the model. The proposed method outperformed the solution developed by the company in all seven cases with feasible computational time.
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- 2019
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42. A Novel Role of Connective Tissue Growth Factor in the Regulation of the Epithelial Phenotype
- Author
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Gogoi, Radhika P., primary, Galoforo, Sandra, additional, Fox, Alexandra, additional, Morris, Colton, additional, Ramos, Harry, additional, Gogoi, Vir K., additional, Chehade, Hussein, additional, Adzibolosu, Nicholas K., additional, Shi, Chenjun, additional, Zhang, Jitao, additional, Tedja, Roslyn, additional, Morris, Robert, additional, Alvero, Ayesha B., additional, and Mor, Gil, additional
- Published
- 2023
- Full Text
- View/download PDF
43. Antibacterial and antivirulence factor activities of protein hydrolysates from Phatthalung Sangyod rice (Oryza sativa L.) seeds against zoonotic and foodborne pathogens
- Author
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Rodjan, Prawit, primary, Sangkanu, Suthinee, additional, Mitsuwan, Watcharapong, additional, Pongpom, Monsicha, additional, Saengsawang, Phirabhat, additional, Tedja, Irma, additional, Lamai, Jarunet, additional, Pruksaphon, Kritsada, additional, and Jeenkeawpieam, Juthatip, additional
- Published
- 2023
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- View/download PDF
44. Short research article
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Amy M. Tedja, Meenakshi S. Shanmugam, Stephen Stathis, Christel M. Middeldorp, Graduate School, APH - Mental Health, ANS - Complex Trait Genetics, ANS - Compulsivity, Impulsivity & Attention, ANS - Mood, Anxiety, Psychosis, Stress & Sleep, and Child and Adolescent Psychiatry & Psychosocial Care
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Psychiatry and Mental health ,Pediatrics, Perinatology and Child Health ,service demand ,emergency department presentations ,Child and adolescent mental health ,Covid-19 ,community mental health services - Abstract
Background: To explore changes in child and youth mental health service (CYMHS) demand in Brisbane, Australia, following the COVID pandemic. Methods: The number of monthly presentations and referrals to respectively the emergency department (ED) and community CYMHS were compared among 2018, 2019 and 2020. Results: The study shows a marked increase in referrals to ED starting from July and in the community from May 2020. In the population referred to as community teams, the proportions of Indigenous children and those from lower socio-economic areas decreased. Conclusions: The COVID-19 pandemic has aggravated the supply and demand disparity in CYMHS, with the largest effect on the most vulnerable families.
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- 2023
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- View/download PDF
45. FUZZY ADAPTIVE CLUSTERING UNTUK MENGETAHUI PENGARUH FAKTOR LINGKUNGAN HIDUP TERHADAP TINGKAT KELUHAN KESEHATAN
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Ani Apriani and Paramitha Tedja Tresnaning
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General Medicine - Abstract
Health is something that is very valuable for a person. Along with the development of life, there are more and more various health complaints. The purpose of this study was to determine the effect of environmental factors on the level of health complaints. The data analysis method uses a classification method, namely clustering using Fuzzy Adaptive Clustering (FAC). In this case, the number of clusters is determined, namely 3 clusters. Environmental factors with the largest average percentage value in cluster 1, namely ownership of garden or land infiltration and waste sorting behavior, and environmental factors with the smallest percentage in cluster 1 are porous infiltration holes, presence of perennials, and the habit of using used water for purposes other. Environmental factors with the largest average percentage in cluster 2, namely the presence of perennials and porous infiltration holes and environmental factors with the smallest percentage in cluster 2 are ownership of motorized vehicles, garden/soil infiltration and waste sorting treatment. While environmental factors with the largest average percentage in cluster 3 are infiltration wells, the habit of using used water for other purposes and ownership of motorized vehicles.
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- 2022
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46. Sustaining Success in B2B Partnerships: Exploring Intention to Continue the Relationship.
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Tedja, Budiarto, Musadieq, Mochammad Al, Yulianto, Edy, and Kusumawati, Andriani
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This study aimed to analyze the influence of service quality, relationship marketing, perceived value, and satisfaction on intention to continue relationships in the business-to-business context of lubricant companies in Indonesia. We utilized the theoretical perspectives of the Social Exchange Theory and Expectation–Confirmation Theory. The research sample comprised 135 distributors of lubricant companies in Indonesia selected through saturated sampling. Data collection employed a survey method, and data were analyzed using PLS-SEM. The results indicate that service quality and relational marketing significantly affect perceived value while perceived value significantly influences satisfaction. However, the direct influence of perceived value on the intention to continue relationships was not significant. Conversely, satisfaction was found to have a significant positive influence on the intention to continue relationships. These findings underscore the importance of integrating sustainability principles into service quality, relationship marketing, and satisfaction strategies to foster long-term business relationships in the B2B context within the lubricant industry in Indonesia. [ABSTRACT FROM AUTHOR]
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- 2024
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47. Apartment with Social Interaction Approach in West Jakarta.
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Tedja, Michael and Radha, Gabriani Cipsa
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- 2024
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48. The Pursuit of Excellence.
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TEDJA, EVE
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- 2024
49. Concordance between Reticulocyte Hemoglobin Equivalent and Reticulocyte Hemoglobin Content in CKD Patients Undergoing Hemodialysis
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Riadi Wirawan, Ailinda Theodora Tedja, Fify Henrika, and Aida Lydia
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reticulocyte hemoglobin content (CHr) ,reticulocyte hemoglobin equivalent (RET-He) ,hemodialysis patient ,Internal medicine ,RC31-1245 - Abstract
Aim: to evaluate the correlation and the concordance between reticulocyte hemoglobin equivalent (RET-He) and reticulocyte hemoglobin content (CHr) as well as to obtain the cut-off value of RET-He as the target of iron supplementation in chronic kidney disease (CKD) patients undergoing hemodialysis. Methods: a cross-sectional study was performed using K3EDTA-anticoagulated peripheral blood samples collected from 106 CKD patients undergoing routine hemodialysis. The samples were then analyzed using both Sysmex XN-2000 and Siemens ADVIA 2120i for RET-He and CHr analysis. Results: a very strong correlation (r=0.91; p
- Published
- 2017
50. Production of Manooligomannan from Palm Kernel Cake by Mannanase Produced from Streptomyces Cyaenus
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Awan Purnawan, Yopi Yopi, and Tun Tedja Irawadi
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Palm Kernel Cake (PKC) ,Streptomyces cyaenus ,mannanase enzyme ,mannooligosaccharide ,Education (General) ,L7-991 ,Biology (General) ,QH301-705.5 - Abstract
The increase of public attention to health has prompted researchers to look for new sources of functional food. Palm Cake Kernel (PKC) waste was abundant in Indonesia, Oligosaccharide has an important benefit for human health. Recently oligosaccharide is not only important as an artificial sweetener, but also as a functional food component. This study was aimed to produce oligo-mannan enzymatically from PKC waste using mannanase derived from of Streptomyces cyaenus isolates of indigenous Indonesia. The enzyme concentration was determined by enzyme activity assay while oligo-mannan content in the PKC was analyzed using TLC and HPLC. Mannanase enzyme activity of 1706 U/ml on the second day of agitation 200 rpm at a temperature of 30°C Hydrolysis of mannooligomannan by using mannanase produced by streptomyces cyaenus. The optimum mannanase enzyme activity obtained on day 2 with the value of the activity as much of 0.702 U/mL. The protein content of the 2nd day at an agitation speed of 150 rpm, 200 rpm, and 250 rpm, respectively, were 1783, 1950 and 2283 ppm. Streptomyces cyaenus is Indonesian original isolates potentially producing mannanase that can produce mannooligomannan.
- Published
- 2017
- Full Text
- View/download PDF
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