29 results on '"Sivanantham, S."'
Search Results
2. Enhancement of test data compression with multistage encoding
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Sivanantham, S., Padmavathy, M., Gopakumar, Ganga, Mallick, P.S., and Perinbam, J. Raja Paul
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- 2014
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3. P-418 The effect of subendometrial injection of autologous platelet rich plasma treatment on refractive endometrium during frozen embryo transfer
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Senthil, P, primary and Sivanantham, S, additional
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- 2022
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4. Trophectoderm morphology is a better predictor of clinical pregnancy in blastocyst transfers
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Nidhi Sharma, Lakshmanan S, Saravanan M, Dhanusu R R, and Sivanantham S
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Pregnancy ,business.industry ,Embryo ,Retrospective cohort study ,medicine.disease ,Andrology ,medicine.anatomical_structure ,embryonic structures ,Biomarker (medicine) ,Inner cell mass ,Medicine ,Blastocyst ,General Pharmacology, Toxicology and Pharmaceutics ,business ,Live birth ,Selection (genetic algorithm) - Abstract
In assisted reproduction, a successful outcome is closely associated with the selection of potentially implantable. culture has its own merits that it can possibly eliminate the selection of non-viable embryos, can mimic physiology with better embryo-uterine and the extended culture can also assess the embryos post-embryonic activation. Scoring of characteristics can also aid in single embryo transfers (SET), reducing the risks of multiple pregnancies. The morphological assessment can serve as a non-invasive tool for better prediction of the outcome in IVF. The two important morphological parameters of grading the inner cell mass (ICM) and the (TE) other than the expansion of the cavity. Various groups reported the importance of either characteristic predicting implantation, pregnancy and live birth. In this retrospective study, we have evaluated which one of these parameters possess the predictive ability of implantation and pregnancy. The embryos frozen as following morphological scoring in the stimulated cycles were replaced in subsequent cycles. The transferred with known implantation were grouped into four different combinations of grades of ICM and TE and analyzed for the association with the clinical pregnancy and the findings were statistically validated. This study demonstrates there is a significant correlation between the grades of TE cells and the clinical pregnancy, so TE grade possibly is a better predictor of in transfers. The grades of embryo can be used as a selection tool for a better IVF outcome.
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- 2020
5. Comparison of Clinical Pregnancy from Humidified and Dry Incubation of Embryos in a Tropical Region
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Dhanusu R R, Nidhi Sharma, Lakshmanan S, Sivanantham S, and Saravanan M
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Pregnancy ,030219 obstetrics & reproductive medicine ,Incubator ,Embryo culture ,Biology ,medicine.disease ,Embryo transfer ,Miscarriage ,Andrology ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,Tropical climate ,medicine ,Blastocyst ,General Pharmacology, Toxicology and Pharmaceutics ,Incubation - Abstract
The laboratory induced cellular stress on zygotes and embryos in their microenvironment could negatively influence the clinical outcome. One of the core components of an IVF lab is the culture incubator. Incubators can provide a stable and appropriate-culture environment by regulating optimal conditions on parameters such as temperature, gas levels and humidity. Clinical studies which compare incubator characteristics may provide insight to their efficacy. In humid conditions of the tropical climate, the incubators without humidifiers can also be used. Hence this study was done to identify the role of a humidifier in a tropical country. In this multicentre retrospective study, embryos from a total of 787 patients were cultured as two groups -A and B in two different types of incubators- humidified and dry, respectively. 647 patients in group A and 140 patients in group B were examined for the developmental parameters. The embryos were frozen at the blastocyst stage and replaced in subsequent frozen embryo transfer cycles. The resulted pregnancy, miscarriage and the clinical pregnancy outcomes were compared. The data was subjected to statistical validation. There was no significant difference observed in the clinical pregnancy rates between the groups. This study validates the possible use of dry incubators for the in vitro culture of human embryos in tropical climate without aiding any humidification.
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- 2020
6. A Technical Survey on Delay Defects in Nanoscale Digital VLSI Circuits
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Sivanantham S and Prathiba Muthukrishnan
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Fluid Flow and Transfer Processes ,Process Chemistry and Technology ,General Engineering ,General Materials Science ,Instrumentation ,Computer Science Applications - Abstract
As technology scales down, digital VLSI circuits are prone to many manufacturing defects. These defects may result in functional and delay-related circuit failures. The number of test escapes grows when technology is downscaled. Small delay defects (SDDs) and hidden delay defects (HDDs) are of critical importance in industries today since they are the source of most test escapes and reliability problems. Improving test quality and creating new test methods, algorithms, and test designs requires a comprehensive study of these delay defects. This article reviews the effect and impact of SDD and HDD in logic circuits. It also analyzes the relevant fault models, automatic test pattern generation (ATPG) methods, faster-than-at-speed testing (FAST), cell-aware (CA) based delay tests, test quality metrics, diagnosis of SDDs and HDDs, and commercially available Electronic Design Automation (EDA) tools. Based on the analysis, the benefits and drawbacks of several accessible approaches are addressed.
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- 2022
7. A Malicious Botnet Traffic Detection Using Machine Learning.
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Sakthivel, M., Sivanantham, S., Akshaya, V., Sivakumar, D., and Karthikeyan, H.
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TRAFFIC monitoring , *MACHINE learning , *BOTNETS , *UNCERTAINTY (Information theory) , *TRAFFIC flow - Abstract
Detection of incorrect and malign data transfers in the Internet of Things (IoT) network is important for IoT safety to observe an eye on and prevent unwelcomed traffic flow to the network of IoT. For it, Machine Learning (ML) strategic methods are produced by several researchers to prevent malign data flows through the network of IoT. Nonetheless, because of the wrong choice of feature, a few malign Machine Learning models differentiate especially the movement of malign traffic. Still, what matters is the problem that needs to be deliberated in-depth to select the best features for better malign traffic acquisition in the network of IoT. Dealing with the challenge, a new process was proposed. 1st, the metric method of selecting a novel feature called the proposed CorrAUC, and hinged on CorrAUC, a new highlight for choosing the Corrauc algorithm name is also being developed, designed hinged on the system folding filter features precisely and select the active features of the choose ML method using AUC metric. After that, we apply a combined application Order of Preference by Similarity to Ideal Solution Using Shannon Entropy (TOPSIS) built on a bijective set which is soft to verify selected features for identification of malign 1traffic in IoT network. We test our method using data set of Bot-IoT and 4 dissimilar ML classifiers. Practical outcomeanalysis showed that our proposed approach works as well and can achieve greater than 96% results on average. [ABSTRACT FROM AUTHOR]
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- 2022
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8. Web Hazard Identification and Detection Using Deep Learning - A Comparative Study.
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Sivanantham, S., Krishnamoorthy, V., Karthikeyan, D., Sakthivel, M., Mohanraj, V., and Akshaya, V.
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BACK propagation , *CONVOLUTIONAL neural networks , *DEEP learning , *UNIFORM Resource Locators , *MACHINE learning , *WEBSITES , *RANDOM forest algorithms - Abstract
Surfing the internet has become an integral part of our day-to-day life. This has become the potential source of intruder attacks. Hazard is cybercriminal posed threat, the simple example for the same is creating malicious URL to pose phishing attack and to gain access to user's personal information. The consequences include identity theft, other types of frauds like malware injection onto the computing devices. Malicious URL is a link that redirects the user to a fraudulent web page. Recognition of such malicious URLs is a prolonging problem since machine learning (ML) has evolved. There have been ML classifier like random forest (RF) and deep learning (DL) classifiers such as Convolutional Neural Network (CNN), Back Propagation Neural Networks (BPNN) and Long Short-Term Memory (LSTM) which may address this classification problem of segregating URLs into malicious and normal. Still these techniques are not sufficient to protect the internet users and requires a robust model that will distinguish between the normal and malicious web pages. This paper introduces a comparative study about ML and DL techniques in classification of URLs as malicious and normal in the given dataset. Among the implemented techniques BPNN gave an optimal accuracy of 96.86%. [ABSTRACT FROM AUTHOR]
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- 2022
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9. Two-stage low power test data compression for digital VLSI circuits
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Thilagavathi Kothandabani, Sivanantham S, and Thilagavathi K
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Very-large-scale integration ,General Computer Science ,Computer science ,020208 electrical & electronic engineering ,02 engineering and technology ,Huffman coding ,020202 computer hardware & architecture ,symbols.namesake ,Control and Systems Engineering ,Test set ,Compression ratio ,0202 electrical engineering, electronic engineering, information engineering ,symbols ,Electrical and Electronic Engineering ,Algorithm ,Electronic circuit ,Coding (social sciences) ,Test data ,Data compression - Abstract
In this paper, we present a hybrid X-filling and two-stage test data compression (TS-TDC) techniques for digital VLSI circuits to reduce the test power and test data volume respectively. The proposed hybrid X-filling combines adjacent filling and modified 4m filling technique to reduce the switching activities of the scan cells. It divides the unspecified bits present in the test cubes by multiples of 4 to increase the correlation between the consecutive test patterns which in turn provides better run length for test data reduction. The filled test cubes are encoded with two stage test data compression in order to reduce test data volume. In the first stage, the completely specified test sets are encoded using Alternative Statistical Run Length (ASRL) coding to enhance the test data compression. The compressed ASRL test set is encoded further using Run Length based Huffman Coding (RLHC) since ASRL codewords contain the maximum run length of oneâ;;s. Experimental results show that the proposed hybrid filling provides the scan-in average and peak-power transition reduction of 88% and 29% respectively against original test sets. The two-stage test data compression scheme achieves a maximum of 86% and an average of 76% compression ratio for ISCAS’89 benchmark circuits.
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- 2018
10. Low-Error Reconfigurable Fixed-Width Multiplier for Image Processing Applications
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Jean Jenifer Nesam Jeyakumar and Sivanantham S
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Standard cell ,Multidisciplinary ,Computer science ,020209 energy ,General Engineering ,Mühendislik ,Image processing ,Reconfigurable multiplier,Fixed-Width multiplier,NBPR algorithm,Image processing applications ,02 engineering and technology ,Engineering ,CMOS ,0202 electrical engineering, electronic engineering, information engineering ,020201 artificial intelligence & image processing ,Multiplier (economics) ,Arithmetic ,Hardware_ARITHMETICANDLOGICSTRUCTURES ,Fixed width - Abstract
Compensating the error using additional circuitry is mandatory in a low-error fixed-width multiplier. Instead of compensating the error, reconfiguring n-bit fixed-width multiplier to n/2-bit error-free full-width multiplier using decomposed multiplication is proposed in this paper. The decomposed block multiplication using an area-efficient New Bit Pair Recoding (NBPR) algorithm in fixed-width mode shows a relatively lesser truncation error than existing truncated multipliers. Reconfigurable 16x16 NBPR multiplier in three different modes (8x8, 16x8,16x16) with a fixed 16-bit product is verified on the TSMC 65nm CMOS standard cell library. The experimental results show that the NBPR multiplier consumes a lesser area than standard Booth multipliers. Evaluating the proposed multiplier in imaging shows improved PSNR with minimal error compared to other fixed-width multipliers
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- 2018
11. High-Throughput Deblocking Filter Architecture Using Quad Parallel Edge Filter for H.264 Video Coding Systems
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Rajabai C., Prayline, primary and Sivanantham, S., additional
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- 2019
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12. ASIC Design of Reversible Adder and Multiplier
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S. Sivanantham S. Sivanantham, M. Jaipal Reddy, Y. Siva Kumar, and B. SaiAbhinav
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Very-large-scale integration ,Combinational logic ,Adder ,CMOS ,Gate count ,Application-specific integrated circuit ,Computer science ,Multiplier (economics) ,Arithmetic ,Algorithm ,Quantum computer ,Electronic circuit - Abstract
Reversible logic is one of the promising research areas in low power applications such as quantum computing, optical information processing and low power CMOS design. In this paper we present a reversible carry look ahead adder and an array multiplier. The circuits are designed such that they result in less garbage outputs, constant inputs, and less gate count compared to previous existing designs. We also gain better improvements in terms of power and area when compared to conventional adders and multipliers. The implemented designs are simulated using NC launch and synthesized by RTL compiler. Keywords Reversible, Garbage constant, Garbage output. 1. INTRODUCTION Power dissipation is one of the important problems faced now a day in VLSI design [4]. The combinational circuit dissipates KTlog 2 [1] Joules of heat for every bit of information to be lasted, irrespective of the technology used .where K is Boltzmann constant and T is temperature. Heat dissipation reduces the life span of the circuits. The information is lost when input bits are not able to recover from the output vectors. Reversible gates naturally take care of heat, since input vectors are uniquely recovered from the output vectors. That is there is one-to-one correspondence between input vectors and output vectors. Each output of the Reversible gates is used once, that is the Reversible circuit is feedback free. Some of the terms related to Reversible logic are [2, 3].
- Published
- 2015
13. An Efficient Technique to Reduce Average and Peak Power in Scan Based BIST
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Thilagavathi Kothandabani, Sivanantham S, and Thilagavathi K
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Multidisciplinary ,Scan chain ,Test compression ,02 engineering and technology ,Parallel computing ,Multiplexer ,020202 computer hardware & architecture ,Power (physics) ,Reduction (complexity) ,030507 speech-language pathology & audiology ,03 medical and health sciences ,Metric (mathematics) ,0202 electrical engineering, electronic engineering, information engineering ,Netlist ,Benchmark (computing) ,Hardware_ARITHMETICANDLOGICSTRUCTURES ,0305 other medical science ,Algorithm ,Mathematics - Abstract
Objectives: A low-transition Test Pattern Generator (TPG) known as Bit Swapping LFSR (BS-LFSR) which generates the test vectors with low transitions. This will increase the correlation and results in one transition between the consecutive test patterns. Methods: The BS-LFSR comprises of an external XOR type LFSR along with multiplexer. The bit swapped test patterns alone is not enough to reduce the average and peak power. The Weighted Transition Metric (WTM) is calculated after shifting of test patterns into the scan cells. Based on WTM values for each test pattern, scan cells are reordered to reduce the test power. Findings: The various CUTs are chosen from ISCAS 89 standard benchmark circuits. The CUTs are synthesized using RTL Compiler tool from Cadence and the scan chain inserted Gate Level Netlist are obtained for each CUT respectively. Improvements: Experimental results show that power reduction is attained by employing the technique.
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- 2016
14. Low-power selective pattern compression for scan-based test applications
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Sivanantham, S., primary, Mallick, P.S., additional, and Raja Paul Perinbam, J., additional
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- 2014
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15. Implementation of Special Function Unit for Vertex Shader Processor Using Hybrid Number System
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Agarwal, Avni, primary, Harsha, P., additional, Vasishta, Swati, additional, and Sivanantham, S., additional
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- 2014
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16. Accumulator based BIST using approximate adders
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Karunamurthy, T., Dey, S., Pooja, R., and Sivanantham S
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BIST ,delay fault ,Test pattern generation ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,Hardware_ARITHMETICANDLOGICSTRUCTURES ,lcsh:TK1-9971 ,accumulator - Abstract
In this paper, we present an accumulator based built-in self test (BIST) with approximate adders for single input change (SIC) test pattern generation. The SIC pairs of test pattern is the key requirement for testing robustly detectable delay faults. The accumulator is designed using approximate adder which is commonly applicable for error tolerant applications whose inputs are driven by barrel shifter. The experimental results show that proposed accumulator with approximate adder is a promising solution for test pattern generation in accumulator based BIST. It is also shown that, the proposed scheme achieves significant reduction in transistor count and generates SIC pairs within (n+1/2) 2n clock cycles as compared to conventional methods.
17. Effect of the staging of rhino-orbital-cerebral mucormycosis on its management and clinical outcome.
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Raj A, Gupta V, Krishnamoorthi S, Kaur H, and Saini V
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- Humans, Male, Antifungal Agents therapeutic use, Female, Adult, Middle Aged, Magnetic Resonance Imaging, Paranasal Sinus Diseases microbiology, Paranasal Sinus Diseases diagnosis, Tomography, X-Ray Computed, Retrospective Studies, Disease Management, Mucormycosis diagnosis, Mucormycosis microbiology, Eye Infections, Fungal microbiology, Eye Infections, Fungal diagnosis, Orbital Diseases microbiology, Orbital Diseases diagnosis, Orbital Diseases therapy
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- 2024
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18. A Review of Rickettsial Diseases Other Than Scrub Typhus in India.
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Krishnamoorthi S, Goel S, Kaur J, Bisht K, and Biswal M
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Rickettsial diseases (RD) are widely reported all over the world. Scrub typhus (ST) is a major tropical infection which is well documented all over India. Therefore, the index of suspicion of scrub typhus is high among physicians with regard to patients presenting with acute febrile illness (AFI) and acute undifferentiated febrile illness (AUFI) in India. Rickettsial diseases other than ST (non-ST RDs), which include spotted fever group (SFG) rickettsioses and typhus group (TG) rickettsioses are not uncommon in India, but the index of suspicion is not as high as ST unless there is a history of the presence of fever with rashes and/or recent arthropod bites. This review aims to look into the Indian scenario on the epidemiology of non-ST RDs, especially the SFG and TG rickettsioses based on various investigations, spectrum of clinical presentation, challenges and gaps in knowledge to suspect and diagnose these infections.
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- 2023
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19. Impact of conducting hand hygiene audit in COVID-19 care locations of India-A large scale national multicentric study - HHAC study.
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Krishnamoorthi S, Priyadarshi K, Rajshekar D, Sundaramurthy R, Dhandapani S, Madigubba H, and Sastry AS
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- Humans, Pandemics prevention & control, Guideline Adherence, Infection Control methods, Health Personnel, Hand Hygiene, Cross Infection prevention & control, COVID-19 prevention & control
- Abstract
Purpose: Hand hygiene (HH), the core element in infection prevention in healthcare, especially for multidrug resistant organism's transmission. The role of HH audits and HH adherence rates in the COVID-19 pandemic, especially in resource limited settings, are yet to be established., Methods: A nationwide multicenter study was conducted in India, involving public, private, teaching and non-teaching COVID healthcare facilities (COVID-HCFs) using the IBhar mobile application based on WHO's hand hygiene audit tool. The HH adherence rates (HHAR) such as complete HHAR (HHCAR), total HHAR (HHTAR), profession specific HHAR, WHO's 5 HH moment specific HHAR and associated variables were measured over 6 month duration (June-December 2021)., Results: A total of 2,01,829 HH opportunities were available and the HHCAR and HHTAR were 27.3% and 59.7%. The HHTAR was significantly higher in the west zone (72.2%), private institutes (65.6%), non-teaching institutes (67.7%), nurses (61.6%), HH moments 2 (71.8%) and 3 (72.1%), and morning shift (61.4%). The HHTAR was better in non-COVID HCFs (65.4%) than COVID-HCFs (57.8%) as well as non-COVID ICUs (68.1%) than COVID ICUs (58.7%). The HHTAR was increased from month 1 to month 6 except a small decrease in the month of December., Conclusions: The hand hygiene adherence is comparable with adherence rate during COVID-19 pandemic in western countries as well as the resource limited settings. The use of gloves during the pandemic and simplified HH techniques and their influence over the HH adherence to be studied further. The sustainable adherence rate over long duration needs to be ensured by continuing the HH audit using multimodal interventions., Competing Interests: Declaration of competing interest None., (Copyright © 2022 Indian Association of Medical Microbiologists. Published by Elsevier B.V. All rights reserved.)
- Published
- 2023
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20. ZnO/Graphene Composite from Solvent-Exfoliated Few-Layer Graphene Nanosheets for Photocatalytic Dye Degradation under Sunlight Irradiation.
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Venkidusamy V, Nallusamy S, Nammalvar G, Veerabahu R, Thirumurugan A, Natarajan C, Dhanabalan SS, Pabba DP, Abarzúa CV, and Kamaraj SK
- Abstract
ZnO/graphene nanocomposites were prepared using a facile approach. Graphene nanosheets were prepared by ultrasonication-based liquid phase exfoliation of graphite powder in a low boiling point organic solvent, 1,2-Dichloroethane, for the preparation of ZnO/graphene nanocomposites. Structural properties of the synthesized ZnO/graphene nanocomposites were studied through powder XRD and micro-Raman analysis. The characteristic Raman active modes of ZnO and graphene present in the micro-Raman spectra ensured the formation of ZnO/graphene nanocomposite and it is inferred that the graphene sheets in the composites were few layers in nature. Increasing the concentration of graphene influenced the surface morphology of the ZnO nanoparticles and a flower shape ZnO was formed on the graphene nanosheets of the composite with high graphene concentration. The efficiencies of the samples for the photocatalytic degradation of Methylene Blue dye under sunlight irradiation were investigated and 97% degradation efficiency was observed. The stability of the nanocomposites was evaluated by performing five cycles, and 92% degradation efficiency was maintained. The observed results were compared with that of ZnO/graphene composite derived from other methods.
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- 2023
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21. Morphology of inner cell mass: a better predictive biomarker of blastocyst viability.
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Sivanantham S, Saravanan M, Sharma N, Shrinivasan J, and Raja R
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- Pregnancy, Humans, Female, Prospective Studies, Pregnancy Outcome, Biomarkers metabolism, Embryo Implantation, Blastocyst
- Abstract
Background: Transfer of embryos at the blastocyst stage is one of the best approaches for achieving a higher success rate in In vitro fertilization (IVF) treatment as it demonstrates an improved uterine and embryonic synchrony at implantation. Despite novel biochemical and genetic markers proposed for the prediction of embryo viability in recent years, the conventional morphological grading of blastocysts remains the classical way of selection in routine practice. This study aims to investigate the association between the morphological features of blastocysts and pregnancy outcomes., Methods: This prospective study included women undergoing single or double frozen blastocyst transfers following their autologous cycles in a period between October 2020 and September 2021. The morphological grades (A-good, B-average, and C-poor) of inner cell mass (ICM) and trophectoderm (TE) of blastocysts with known implantation were compared to assess their predictive potential of pregnancy outcome. It was further explored by measuring the relationship between the two variables using logistic regression and receiver operating characteristic (ROC) analysis., Results: A total of 1,972 women underwent frozen embryo transfer (FET) cycles with a total of 3,786 blastocysts. Known implantation data (KID) from 2,060 blastocysts of 1,153 patients were subjected to statistical analysis, the rest were excluded. Implantation rates (IR) from transfer of ICM/TE grades AA, AB, BA, BB were observed as 48.5%, 39.4%, 23.4% and 25% respectively. There was a significantly higher IR observed in blastocysts with ICM grade A ( p < 0.001) than those with B irrespective of their TE scores. The analysis of the interaction between the two characteristics confirmed the superiority of ICM over TE as a predictor of the outcome. The rank biserial correlation value for ICM was also greater compared to that of TE (0.11 vs 0.05)., Conclusion: This study confirms that the morphology of ICM of the blastocyst is a stronger predictor of implantation and clinical pregnancy than that of TE and can be utilized as a biomarker of viability., Competing Interests: The authors declare there are no competing interests., (©2022 Sivanantham et al.)
- Published
- 2022
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22. Environmental water surveillance for free-living amoeba in North India.
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Krishnamoorthi S, Sharma C, Mewara A, and Khurana S
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- Animals, Humans, Polymerase Chain Reaction, Sheep, Water, Acanthamoeba genetics, Amoeba, Naegleria
- Abstract
Purpose: Free-living amoebae (FLA) exist in various environmental sources and are the causative agents of many serious human diseases. We surveyed various natural and artificial water bodies in areas of north India to detect the presence of FLA species., Materials and Methods: Surface water samples were collected from 29 water bodies and subjected to microscopy, non-nutrient agar (NNA) culture, and various polymerase chain reaction (PCR) assays for the detection of FLA., Results: FLA were found in 62.1% (18/29) of the natural and artificial water bodies by NNA culture. Based on PCR based detection, Acanthamoeba spp. was identified in 41.4% (12/29), Vannella spp./Vahlkampfia ovis in 17.2% (5/29) and Naegleria spp. in 20.7% (6/29) of the samples from different locations. PCR-sequencing of Naegleria positive samples identified them as Naegleria australiensis and Naegleria species., Conclusions: The present study reports widespread occurrence of medically important FLA species in various natural and artificial water bodies, and highlights the need for regular molecular surveillance of FLA in the environment for better control and prevention of the diseases caused by FLA., Competing Interests: Declaration of competing interest None., (Copyright © 2022 Indian Association of Medical Microbiologists. Published by Elsevier B.V. All rights reserved.)
- Published
- 2022
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23. Diversity of bacterial endophyte in Eucalyptus clones and their implications in water stress tolerance.
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Dasgupta MG, Burragoni S, Amrutha S, Muthupandi M, Parveen ABM, Sivakumar V, and Ulaganathan K
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- Bacteroidetes classification, Bacteroidetes genetics, Biomarkers analysis, DNA, Bacterial genetics, Endophytes classification, Endophytes genetics, Endophytes isolation & purification, Escherichia coli classification, Escherichia coli genetics, Firmicutes classification, Firmicutes genetics, Proteobacteria classification, Proteobacteria genetics, RNA, Ribosomal, 16S genetics, Bacteroidetes isolation & purification, Escherichia coli isolation & purification, Eucalyptus microbiology, Firmicutes isolation & purification, Proteobacteria isolation & purification
- Abstract
The genus Eucalyptus with over 747 species occurs in wide ecological range and is preferred for bioenergy plantations due to their short rotation, rapid growth and superior wood properties. They are planted in 22 million ha area and India is third largest planter of Eucalyptus. In the present study, the bacterial endophyte community in leaves of six Eucalyptus clones belonging to E. tereticornis and E. camaldulensis was assessed by sequencing the V3-V4 region of the bacterial 16S rRNA gene. The clones were selected based on their response to progressive water stress. A total of 4947 operational taxonomic units (OTUs) were obtained and the dominant phyla were Proteobacteria, Bacteroidetes and Firmicutes. Escherichia coli was enriched in all samples at species level. Comparison of endophyte diversity was conducted between the two species and across the water stress tolerant and susceptible clones. The alpha-diversity analysis revealed that species richness and diversity was high in E. camaldulensis and water stress susceptible clones. LefSe analysis predicted 69 and 54 significantly enriched taxonomic biomarkers between species and stress response groups respectively. A maximum of 49 taxonomic biomarkers were recorded in susceptible group and the significantly enriched species were Bacteroides thetaiotaomicron and Turicibacter sanguinis, while the tolerant group documented 5 biomarkers including oscillibacter sp. The presence of functional biomarkers was also assessed in both the groups. The findings of the present study provides an insight into the diversity of bacterial endophyte in Eucalyptus leaves and to our knowledge this is the first report on documenting the endophyte abundance in water stress responsive Eucalyptus clones., (Copyright © 2020. Published by Elsevier GmbH.)
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- 2020
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24. Discovery of carbon nanotubes in sixth century BC potteries from Keeladi, India.
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Kokarneswaran M, Selvaraj P, Ashokan T, Perumal S, Sellappan P, Murugan KD, Ramalingam S, Mohan N, and Chandrasekaran V
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Unique black coatings were observed in the inner wall of pottery shreds excavated from Keeladi, Tamilnadu, India. Raman spectroscopy, transmission electron microscopy, and X-ray photoelectron spectroscopy were used to understand the nature of the coating. The analysis revealed the presence of single, multi-walled carbon nanotubes and layered sheets in the coating. The average diameter of single-walled carbon nanotube found to be about 0.6 ± 0.05 nm. This is the lowest among the single-walled carbon nanotubes reported from artefacts so far and close to the theoretically predicted value (0.4 nm). These nanomaterials were coated in the pottery's that date backs to sixth century BC, and still retain its stability and adhesion. The findings of nano materials in the pre-historic artifacts, its significance and impact are discussed in this article.
- Published
- 2020
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25. Predicting the rate constants of semivolatile organic compounds with hydroxyl radicals and ozone in indoor air.
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Wei W, Sivanantham S, Malingre L, Ramalho O, and Mandin C
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- Hydroxyl Radical, Organic Chemicals, Air Pollutants analysis, Air Pollution, Indoor analysis, Ozone, Polycyclic Aromatic Hydrocarbons analysis
- Abstract
Semivolatile organic compounds (SVOCs) in air can react with hydroxyl radicals (OH), nitrate radicals (NO
3 ) and ozone (O3 ). Two questions regarding SVOC reactivity with OH, NO3 and O3 in the gas and particle phases remain to be addressed: according to the existing measurements in the literature, which are the most reactive SVOCs in air, and how can the SVOC reactivity in the gas and particle phases be predicted? In the present study, a literature review of the second-order rate constant (k) was carried out to determine the SVOC reactivity with OH, NO3 and O3 in the gas and particle phases in ambient and indoor air at room temperature. Measured k values were available in the literature for 90 polycyclic aromatic hydrocarbons (PAHs), polychlorinated biphenyls (PCBs), organophosphates, dioxins, di(2-ethylhexyl)phthalate (DEHP) and pesticides including pyrifenox, carbamates and terbuthylazine. PAHs and organophosphates were found to be more reactive than dioxins and PCBs. Based on the obtained data, quantitative structure-activity relationship (QSAR) models were developed to predict the k value using quantum chemical, molecular, physical property and environmental descriptors. Eight linear and nonlinear statistical models were employed, including regression models, bagging, random forest and gradient boosting. QSAR models were developed for SVOC/OH reactions in the gas and particle phases and SVOC/O3 reactions in the particle phase. Models for SVOC/NO3 and SVOC/O3 reactions in the gas phase could not be developed due to the lack of measured k values for model training. The least absolute shrinkage and selection operator (LASSO) regression and random forest models were identified as the most effective models for SVOC reactivity prediction according to a comparison of model performance metrics., Competing Interests: Declaration of competing interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Ltd. All rights reserved.)- Published
- 2020
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26. Rickettsial Diseases: Not Uncommon Causes of Acute Febrile Illness in India.
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Biswal M, Krishnamoorthi S, Bisht K, Sehgal A, Kaur J, Sharma N, Suri V, and Sethi S
- Abstract
Rickettsial diseases (RDs) are major under-diagnosed causes of arthropod borne acute febrile illness (AFI) presenting with a range of symptoms from mild self-limiting fever to fatal sepsis. The spotted fever group (SFG) and typhus group (TG) are major RDs, which are commonly caused by Rickettsia conorii and Rickettsia typhi , respectively. The limited availability and role of serological tests in the acute phase of illness warrants rapid reliable molecular methods for diagnosis and epidemiological studies. Two hundred patients with AFI in whom the routine fever diagnostics were negative, were enrolled over a period of two months (April 2019 to May 2019). DNA was extracted and in-house nested PCR using primers specific for both SPG and TG pathogens was used. The positive amplified products were sequenced for species identification and phylogenetic analysis was performed using MEGA 7.0.14 software (iGEM, Temple University, Philadelphia, PA 19122, USA). The demographic details of the RD cases were documented. The prevalence of RD among AFI cases was 7% (14/200); SFG and TG were identified as the cause in 4% and 3% of AFI cases, respectively. The median age of the RD cases was 22 years (range 2-65). The median duration of fever was 3 days (range 1-12). The RD cases presented with respiratory symptoms or signs (44.44%), jaundice (22.22%), abdominal pain (22.22%), diarrhea (22.22), vesicular rash (11.11%), vomiting (11.11%), loss of appetite (11.11%), headache (11.11%), leukocytosis (88.88% with mean count 22,750/mm
3 ), and thrombocytopenia (33.33%). The cases were treated empirically with piperacillin-tazobactam (66.66%), clindamycin (44.44%), cefotaxime (33.33%), meropenem (33.33%), metronidazole (33.33%), doxycycline (22.22%), azithromycin (22.22%), ceftriaxone (11.11%), and amoxicillin-clavulanic acid (11.11%). The mortality among the RD cases was 11.11%. The present pilot study shows that RD is not an uncommon cause of AFI in north India. The febrile episodes are usually transient, not severe and associated with heterogenous clinical presentation without documented history of tick exposure in the hospitalized patients. The transient, non-severe, febrile illness could be due to transient rickettsemia resulting from empirical antimicrobial therapy as the rickettsial organisms are expected to be more susceptible to higher doses of β-lactam antibiotics. The study emphasizes the molecular method as a useful tool to identify rickettsial etiology in AFI.- Published
- 2020
- Full Text
- View/download PDF
27. Fatal Amoebic Meningoencephalitis Caused by Balamuthia mandrillaris in a Sarcoidosis Patient.
- Author
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Tarai B, Agarwal P, Krishnamoorthi S, Mewara A, and Khurana S
- Subjects
- Amebiasis diagnosis, Amebiasis pathology, Brain parasitology, Brain pathology, Central Nervous System Protozoal Infections complications, Central Nervous System Protozoal Infections diagnosis, Central Nervous System Protozoal Infections parasitology, Central Nervous System Protozoal Infections pathology, Fatal Outcome, Humans, Infectious Encephalitis diagnosis, Infectious Encephalitis parasitology, Infectious Encephalitis pathology, Male, Meningoencephalitis diagnosis, Meningoencephalitis pathology, Middle Aged, Sarcoidosis drug therapy, Sarcoidosis immunology, Amebiasis complications, Amebiasis parasitology, Balamuthia mandrillaris physiology, Immunocompromised Host, Meningoencephalitis parasitology, Sarcoidosis complications, Sarcoidosis parasitology
- Published
- 2018
- Full Text
- View/download PDF
28. Surface Active to Non-Surface Active Transition and Micellization Behaviour of Zwitterionic Amphiphilic Diblock Copolymers: Hydrophobicity and Salt Dependency.
- Author
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Murugaboopathy S and Matsuoka H
- Abstract
We have synthesized a range of zwitterionic amphiphilic diblock copolymers with the same hydrophilic block (carboxybetaine) but with different hydrophobic blocks ( n -butylmethacrylate ( n -BMA) or 2-ethylhexylacrylate (EHA)) by the reversible addition⁻fragmentation chain transfer (RAFT) polymerization method. Herein, we systematically examined the role of hydrophobicity and salt concentration dependency of surface activity and micellization behaviour of block copolymer. Transition from surface active to non-surface active occurred with increasing hydrophobicity of the hydrophobic block of block copolymer (i.e., replacing P( n -BMA) by PEHA). Foam formation of block copolymer slightly decreased with the similar variation of the hydrophobic block of block copolymer. Block copolymer with higher hydrophobicity preferred micelle formation rather than adsorption at the air⁻water interface. Dynamic light scattering studies showed that block copolymer having P( n -BMA) produced near-monodisperse micelles, whereas block copolymer composed of PEHA produced polydisperse micelles. Zimm plot results revealed that the value of the second virial coefficient ( A ₂) changed from positive to negative when the hydrophobic block of block copolymer was changed from P( n -BMA) to PEHA. This indicates that the solubility of block copolymer having P( n -BMA) in water may be higher than that of block copolymer having PEHA in water. Unlike ionic amphiphilic block copolymer micelles, the micellar shape of zwitterionic amphiphilic block copolymer micelles is not affected by addition of salt, with a value of packing parameters of block copolymer micelles of less than 0.3., Competing Interests: The authors declare no conflict of interest.
- Published
- 2017
- Full Text
- View/download PDF
29. Role of alpha-tocopherol on antioxidant status in liver, lung and kidney of PCB exposed male albino rats.
- Author
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Banudevi S, Krishnamoorthy G, Venkataraman P, Vignesh C, Aruldhas MM, and Arunakaran J
- Subjects
- Animals, Antioxidants metabolism, Body Weight drug effects, Drug Interactions, Enzymes metabolism, Glutathione metabolism, Kidney drug effects, Kidney metabolism, Kidney pathology, Liver drug effects, Liver metabolism, Liver pathology, Lung drug effects, Lung metabolism, Lung pathology, Male, Organ Size drug effects, Rats, Rats, Wistar, Reactive Oxygen Species metabolism, Antioxidants pharmacology, Antithyroid Agents toxicity, Chlorodiphenyl (54% Chlorine) toxicity, Environmental Pollutants toxicity, Oxidative Stress drug effects, alpha-Tocopherol pharmacology
- Abstract
Polychlorinated biphenyls (PCB) are widespread, lipophilic environmental pollutants which have been identified as contaminants in almost every component of the global ecosystem including fish, wildlife, and human adipose tissue, breast milk, and serum. Several studies have shown that PCBs can cause oxidative damage to biomolecules, in the form of lipid peroxidation, modulation of antioxidant enzymes, and oxidative stress. In the present study, we have sought to investigate the effects of alpha-tocopherol (vitamin E) on antioxidant status of PCB-induced toxicity in male Wistar rats. The protective effect of alpha-tocopherol (50mg/kg body weight/day) was tested in PCB-induced toxicity in rat liver, lung, and kidney. We report here that the oral supplementation of alpha-tocopherol was found to maintain the cellular redox status by maintaining the activities of superoxide dismutase, catalase, glutathione peroxidase, glutathione reductase accompanied with glutathione and vitamin E levels and down regulation in the levels of lipid peroxides, hydroxyl radical and hydrogen peroxides generation in PCB treated rats. Therefore, our present study demonstrates the PCB-induced deficits in antioxidant enzyme activities and increase in reactive oxygen species and lipid peroxidation levels in liver, kidney, and lung which can be overcome through simultaneous supplementation with alpha-tocopherol.
- Published
- 2006
- Full Text
- View/download PDF
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