10 results on '"Santos-Pérez, Isaac"'
Search Results
2. Allosteric control of dynamin-related protein 1 through a disordered C-terminal Short Linear Motif
- Author
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Pérez-Jover, Isabel, Rochon, Kristy, Hu, Di, Mahajan, Mukesh, Madan Mohan, Pooja, Santos-Pérez, Isaac, Ormaetxea Gisasola, Julene, Martinez Galvez, Juan Manuel, Agirre, Jon, Qi, Xin, Mears, Jason A., Shnyrova, Anna V., and Ramachandran, Rajesh
- Published
- 2024
- Full Text
- View/download PDF
3. Membrane fission via transmembrane contact
- Author
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German Research Foundation, European Commission, Agencia Estatal de Investigación (España), Eusko Jaurlaritza, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), Martínez Gálvez, Juan Manuel [0000-0003-1526-5282], Shnyrova, Anna V. [0000-0003-1526-5282], Spencer, Russell K. W., Santos-Pérez, Isaac, Rodríguez-Renovales, Izaro, Martínez Gálvez, Juan Manuel, Shnyrova, Anna V., Müller, Marcus, German Research Foundation, European Commission, Agencia Estatal de Investigación (España), Eusko Jaurlaritza, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), Martínez Gálvez, Juan Manuel [0000-0003-1526-5282], Shnyrova, Anna V. [0000-0003-1526-5282], Spencer, Russell K. W., Santos-Pérez, Isaac, Rodríguez-Renovales, Izaro, Martínez Gálvez, Juan Manuel, Shnyrova, Anna V., and Müller, Marcus
- Abstract
Division of intracellular organelles often correlates with additional membrane wrapping, e.g., by the endoplasmic reticulum or the outer mitochondrial membrane. Such wrapping plays a vital role in proteome and lipidome organization. However, how an extra membrane impacts the mechanics of the division has not been investigated. Here we combine fluorescence and cryo-electron microscopy experiments with self-consistent field theory to explore the stress-induced instabilities imposed by membrane wrapping in a simple double-membrane tubular system. We find that, at physiologically relevant conditions, the outer membrane facilitates an alternative pathway for the inner-tube fission through the formation of a transient contact (hemi-fusion) between both membranes. A detailed molecular theory of the fission pathways in the double membrane system reveals the topological complexity of the process, resulting both in leaky and leakless intermediates, with energies and topologies predicting physiological events.
- Published
- 2024
4. Membrane fission via transmembrane contact. Supplementary Information
- Author
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Martínez Gálvez, Juan Manuel [0000-0003-1526-5282], Shnyrova, Anna V. [0000-0003-1526-5282], Spencer, Russell K. W., Santos-Pérez, Isaac, Rodríguez-Renovales, Izaro, Martínez Gálvez, Juan Manuel, Shnyrova, Anna V., Müller, Marcus, Martínez Gálvez, Juan Manuel [0000-0003-1526-5282], Shnyrova, Anna V. [0000-0003-1526-5282], Spencer, Russell K. W., Santos-Pérez, Isaac, Rodríguez-Renovales, Izaro, Martínez Gálvez, Juan Manuel, Shnyrova, Anna V., and Müller, Marcus
- Published
- 2024
5. Allosteric control of dynamin-related protein 1 through a disordered C-terminal Short Linear Motif
- Author
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Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, Pérez-Jover, Isabel, Rochon, Kristy, Hu, Di, Mahajan, Mukesh, Madan Mohan, Pooja, Santos-Pérez, Isaac, Ormaetxea Gisasola, Julene, Martínez Gálvez, Juan Manuel, Agirre, Jon, Qi, Xin, Mears, Jason A., Shnyrova, Anna V., Ramachandran, Rajesh, Ministerio de Ciencia, Innovación y Universidades (España), Ministerio de Ciencia e Innovación (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, Pérez-Jover, Isabel, Rochon, Kristy, Hu, Di, Mahajan, Mukesh, Madan Mohan, Pooja, Santos-Pérez, Isaac, Ormaetxea Gisasola, Julene, Martínez Gálvez, Juan Manuel, Agirre, Jon, Qi, Xin, Mears, Jason A., Shnyrova, Anna V., and Ramachandran, Rajesh
- Abstract
The mechanochemical GTPase dynamin-related protein 1 (Drp1) catalyzes mitochondrial and peroxisomal fission, but the regulatory mechanisms remain ambiguous. Here we find that a conserved, intrinsically disordered, six-residue Short Linear Motif at the extreme Drp1 C-terminus, named CT-SLiM, constitutes a critical allosteric site that controls Drp1 structure and function in vitro and in vivo. Extension of the CT-SLiM by non-native residues, or its interaction with the protein partner GIPC-1, constrains Drp1 subunit conformational dynamics, alters self-assembly properties, and limits cooperative GTP hydrolysis, surprisingly leading to the fission of model membranes in vitro. In vivo, the involvement of the native CT-SLiM is critical for productive mitochondrial and peroxisomal fission, as both deletion and non-native extension of the CT-SLiM severely impair their progression. Thus, contrary to prevailing models, Drp1-catalyzed membrane fission relies on allosteric communication mediated by the CT-SLiM, deceleration of GTPase activity, and coupled changes in subunit architecture and assembly-disassembly dynamics.
- Published
- 2024
6. Structural basis for assembly of vertical single β-barrel viruses
- Author
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Santos-Pérez, Isaac, Charro, Diego, Gil-Carton, David, Azkargorta, Mikel, Elortza, Felix, Bamford, Dennis H., Oksanen, Hanna M., and Abrescia, Nicola G. A.
- Published
- 2019
- Full Text
- View/download PDF
7. Determinación estructural de virus con envuelta lipída mediante crio-microscopía electrónica
- Author
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Santos Pérez, Isaac, Abrescia, Nicola A.G., and Goñi Urcelay, Félix María
- Subjects
electron microscopy ,estructura molecular ,viruses ,microscopia electrónica ,molecular biology ,molecular structure ,bioquímica molecular - Abstract
152 p. Viruses are parasitic biological agents that in the virion state contain differentmorphologies and assembly organisations. In some virions, a lipid membrane of cellularorigin is a structural component of the infectious particle. This membrane can belocated as the outermost layer or internally depending on the species. Our work aims atunderstanding the mechanism of assembly and the viral proteins involved in cellularinfection, using for that Cryo-electron microscopy (Cryo-EM) and Cryo-electrontomography (Cryo-ET).In the first case, we present the 3D structures of the archaeal, halophilic, internalmembrane-containing Haloarcula californiae icosahedral virus 1 (HCIV-1) andHaloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.7 and 3.8 Å resolution,respectively, using single-particle cryo-electron microscopy. These structures reveal theviral assembly mechanisms of the capsid shell over the internal membrane and themorphology of the viral receptors.In the second case (ongoing study), using Cryo-ET technique, we have morphologicallycharacterised pleomorphic Bovine Viral Diarrhea Virus 1 (BVDV), as very little isknown about the assembly, virus entry and antibody recognition. Thus, combining cryo-ET with sub-tomogram averaging, we present the preliminary cryo-ET average map ofthe BVDV type 1 bound to mAbs against the glycoproteins Erns.
- Published
- 2020
8. Bacteriophage PRD1 as a nanoscaffold for drug loading
- Author
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Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, CIC bioGUNE, Wellcome, Medical Research Council (UK), Duyvesteyn, Helen M. E., Santos-Pérez, Isaac, Peccati, Francesca, Martínez-Castillo, Ane, Walter, Thomas S., Reguera, David, Goñi, Félix M., Jiménez-Osés, Gonzalo, Oksanen, Hanna M., Stuart, David I., Abrescia, Nicola G. A., Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), European Commission, Eusko Jaurlaritza, CIC bioGUNE, Wellcome, Medical Research Council (UK), Duyvesteyn, Helen M. E., Santos-Pérez, Isaac, Peccati, Francesca, Martínez-Castillo, Ane, Walter, Thomas S., Reguera, David, Goñi, Félix M., Jiménez-Osés, Gonzalo, Oksanen, Hanna M., Stuart, David I., and Abrescia, Nicola G. A.
- Abstract
Viruses are very attractive biomaterials owing to their capability as nanocarriers of genetic material. Efforts have been made to functionalize self-assembling viral protein capsids on their exterior or interior to selectively take up different payloads. PRD1 is a double-stranded DNA bacteriophage comprising an icosahedral protein outer capsid and an inner lipidic vesicle. Here, we report the three-dimensional structure of PRD1 in complex with the antipsychotic drug chlorpromazine (CPZ) by cryo-electron microscopy. We show that the jellyrolls of the viral major capsid protein P3, protruding outwards from the capsid shell, serve as scaffolds for loading heterocyclic CPZ molecules. Additional X-ray studies and molecular dynamics simulations show the binding modes and organization of CPZ molecules when complexed with P3 only and onto the virion surface. Collectively, we provide a proof of concept for the possible use of the lattice-like organisation and the quasi-symmetric morphology of virus capsomers for loading heterocyclic drugs with defined properties.
- Published
- 2021
9. Determinación estructural de virus con envuelta lipída mediante crio-microscopía electrónica.
- Author
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Abrescia, Nicola A.G., Goñi Urcelay, Félix María, Bioquímica y biología molecular, Biokimika eta biologia molekularra, Santos Pérez, Isaac, Abrescia, Nicola A.G., Goñi Urcelay, Félix María, Bioquímica y biología molecular, Biokimika eta biologia molekularra, and Santos Pérez, Isaac
- Abstract
152 p., Viruses are parasitic biological agents that in the virion state contain differentmorphologies and assembly organisations. In some virions, a lipid membrane of cellularorigin is a structural component of the infectious particle. This membrane can belocated as the outermost layer or internally depending on the species. Our work aims atunderstanding the mechanism of assembly and the viral proteins involved in cellularinfection, using for that Cryo-electron microscopy (Cryo-EM) and Cryo-electrontomography (Cryo-ET).In the first case, we present the 3D structures of the archaeal, halophilic, internalmembrane-containing Haloarcula californiae icosahedral virus 1 (HCIV-1) andHaloarcula hispanica icosahedral virus 2 (HHIV-2) at 3.7 and 3.8 Å resolution,respectively, using single-particle cryo-electron microscopy. These structures reveal theviral assembly mechanisms of the capsid shell over the internal membrane and themorphology of the viral receptors.In the second case (ongoing study), using Cryo-ET technique, we have morphologicallycharacterised pleomorphic Bovine Viral Diarrhea Virus 1 (BVDV), as very little isknown about the assembly, virus entry and antibody recognition. Thus, combining cryo-ET with sub-tomogram averaging, we present the preliminary cryo-ET average map ofthe BVDV type 1 bound to mAbs against the glycoproteins Erns.
- Published
- 2020
10. Fission of double-membrane tubes under tension
- Author
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Spencer, Russell K.W., Santos-Pérez, Isaac, Shnyrova, Anna V., and Müller, Marcus
- Abstract
The division of a cellular compartment culminates with the scission of a highly constricted membrane neck. Scission requires lipid rearrangements, topology changes, and transient formation of nonbilayer intermediate structures driven by curvature stress. Often, a side effect of this stress is pore-formation, which may lead to content leakage and thus breaching of the membrane barrier function. In single-membrane systems, leakage is avoided through the formation of a hemifusion (HF) intermediate, whose structure is still a subject of debate. The consequences of curvature stress have not been explored in double-membrane systems, such as the mitochondrion. Here, we combine experimental and theoretical approaches to study neck constriction and scission driven by tension in biomimetic lipid systems, namely single- and double-membrane nanotubes (sNTs and dNTs), respectively. In sNTs, constriction by high tension gives rise to a metastable HF intermediate (seen as stalk or worm-like micelle), whereas poration is universally slower in a simple neck. In dNTs, high membrane tension causes sequential rupture of each membrane. In contrast, low tension leads to the HF of both membranes, which may lead to a leaky fusion pathway, or may progress to further fusion of the two membranes along a number of transformation pathways. These findings provide a new mechanistic basis for fundamental cellular processes.
- Published
- 2024
- Full Text
- View/download PDF
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