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It is crucial to capture the actual infection scale of communicable diseases. However, the official case numbers cannot equal to actual infection scale in society, because a large number of asymptomatic individuals are not recognized. To deal with this challenge, this paper takes COVID-19 as the object, and develops an improved SEIR dynamics model to estimate its actual infection scale. Generalized to the circumstances in this work, we improve the classical SEIR model by considering three implicit factors: self-recovered asymptomatic individuals, recovered individuals, and deceased individuals. The dynamics process inside the improved model is expressed using mathematical formulas, and the parameter estimation scheme is given accordingly. To evaluate the estimation effect of the proposal, we employ pandemic data from 10 representative countries to build experimental scenario. The results obtained through model fitting demonstrate that the estimated actual infection scale is approximately 10–30 times higher than the reported average “newly confirmed cases”. Furthermore, our findings reveal a noteworthy negative correlation between the transmission coefficient and vaccination rate, confirming the beneficial role of vaccination in mitigating COVID-19 spreading. [ABSTRACT FROM AUTHOR]

During the COVID-19 pandemic, over one thousand papers were published on "Susceptible- Exposed-Infectious-Removed" (SEIR) epidemic computational models. The English word "exposed" in its vernacular and public health usage means a state of having been in contact with an infectious individual, but not necessarily infected. In contrast, the term "exposed" in SEIR modeling usage typically stands for a state of already being infected but not yet being infectious to others, a state more properly termed "latently infected." In public health language, "exposed" means possibly infected, yet in SEIR modeling language, "exposed" means already infected. This paper retraces the conceptual and mathematical origins of this terminological disconnect and concludes that epidemic modelers should consider using the "SLIR" notational short-hand (L for Latent) instead of SEIR. [ABSTRACT FROM AUTHOR]

Basic Susceptible-Exposed-Infectious-Removed (SEIR) models of COVID-19 dynamics tend to be excessively pessimistic due to high basic reproduction values, which result in overestimations of cases of infection and death. We propose an extended SEIR model and daily data of COVID-19 cases in the U.S. and the seven largest European countries to forecast possible pandemic dynamics by investigating the effects of infection vulnerability stratification and measures on preventing the spread of infection. We assume that (i) the number of cases would be underestimated at the beginning of a new virus pandemic due to the lack of effective diagnostic methods and (ii) people more susceptible to infection are more likely to become infected; whereas during the later stages, the chances of infection among others will be reduced, thereby potentially leading to pandemic cessation. Based on infection vulnerability stratification, we demonstrate effects brought by the fraction of infected persons in the population at the start of pandemic deceleration on the cumulative fraction of the infected population. We interestingly show that moderate and long-lasting preventive measures are more effective than more rigid measures, which tend to be eventually loosened or abandoned due to economic losses, delay the peak of infection and fail to reduce the total number of cases. Our calculations relate the pandemic's second wave to high seasonal fluctuations and a low vulnerability stratification coefficient. Our characterisation of basic reproduction dynamics indicates that second wave of the pandemic is likely to first occur in Germany, Spain, France, and Italy, and a second wave is also possible in the U.K. and the U.S. Our findings show that even if the total elimination of the virus is impossible, the total number of infected people can be reduced during the deceleration stage. [ABSTRACT FROM AUTHOR]

During the COVID-19 pandemic, over one thousand papers were published on “Susceptible-Exposed-Infectious-Removed” (SEIR) epidemic computational models. The English word “exposed” in its vernacular and public health usage means a state of having been in contact with an infectious individual, but not necessarily infected. In contrast, the term “exposed” in SEIR modeling usage typically stands for a state of already being infected but not yet being infectious to others, a state more properly termed “latently infected.” In public health language, “exposed” means possibly infected, yet in SEIR modeling language, “exposed” means already infected. This paper retraces the conceptual and mathematical origins of this terminological disconnect and concludes that epidemic modelers should consider using the “SLIR” notational short-hand (L for Latent) instead of SEIR.

Abstract The E/S (exposed/susceptible) ratio is analyzed in the SEIR model. The ratio plays a key role in understanding epidemic dynamics during the 2014–2016 Ebola outbreak in Sierra Leone and Guinea. The maximum value of the ratio occurs immediately before or after the time-dependent reproduction number (R t ) equals 1, depending on the initial susceptible population (S(0)). It is demonstrated that transmission rate curves corresponding to various incubation periods intersect at a single point referred to as the Cross Point (CP). At this point, the E/S ratio reaches an extremum, signifying a critical shift in transmission dynamics and aligning with the time when R t approaches 1. By plotting transmission rate curves, β(t), for any two arbitrary incubation periods and tracking their intersections, we can trace CP over time. CP serves as an indicator of epidemic status, especially when R t is close to 1. It provides a practical means of monitoring epidemics without prior knowledge of the incubation period. Through a case study, we estimate the transmission rate and reproduction number, identifying CP and R t = 1 while examining the E/S ratio across various values of S(0).

Abstract Current global COVID-19 booster scheduling strategies mainly focus on vaccinating high-risk populations at predetermined intervals. However, these strategies overlook key data: the direct insights into individual immunity levels from active serological testing and the indirect information available either through sample-based sero-surveillance, or vital demographic, location, and epidemiological factors. Our research, employing an age-, risk-, and region-structured mathematical model of disease transmission—based on COVID-19 incidence and vaccination data from Israel between 15 May 2020 and 25 October 2021—reveals that a more comprehensive strategy integrating these elements can significantly reduce COVID-19 hospitalizations without increasing existing booster coverage. Notably, the effective use of indirect information alone can considerably decrease COVID-19 cases and hospitalizations, without the need for additional vaccine doses. This approach may also be applicable in optimizing vaccination strategies for other infectious diseases, including influenza.

In this work, we developed, validated, and analysed the behaviour of a compartmental model of COVID-19 transmission in Saudi Arabia. The population was structured into four classes: susceptible (S), exposed (E), infectious (I), and removed (R) individuals. This SEIR model assumes a bilinear incidence rate and a nonlinear recovery rate that depends on the quality of health services. The model also considers a treatment function and incorporates the effect of fear due to the disease. We derived the expression of the basic reproduction number and the equilibrium points of the model and demonstrated that when the reproduction number is less than one, the disease-free equilibrium is stable, and the model predicts a backward bifurcation. We further found that when the reproduction number is larger than one, the model predicts stable periodic behaviour. Finally, we used numerical simulations with parameter values fitted to Saudi Arabia to analyse the effects of the model parameters on the model-predicted dynamic behaviours. [ABSTRACT FROM AUTHOR]

Background: The most commonly used mathematical model for analyzing disease spread is the Susceptible-Exposed-InfectedRecovered (SEIR) model. Moreover, the dynamics of the SEIR model depend on several factors, such as the parameter values. Objective: This study aimed to compare two optimization methods, namely genetic algorithm (GA) and particle swarm optimization (PSO), in estimating the SEIR model parameter values, such as the infection, transition, recovery, and death rates. Methods: GA and PSO algorithms were compared to estimate parameter values of the SEIR model. The fitness value was calculated from the error between the actual data of cumulative positive COVID-19 cases and the numerical data of cases from the solution of the SEIR COVID-19 model. Furthermore, the numerical solution of the COVID-19 model was calculated using the fourth-order Runge-Kutta algorithm (RK-4), while the actual data were obtained from the cumulative dataset of positive COVID-19 cases in the province of Jakarta, Indonesia. Two datasets were then used to compare the success of each algorithm, namely, Dataset 1, representing the initial interval for the spread of COVID-19, and Dataset 2, representing an interval where there was a high increase in COVID-19 cases. Results: Four parameters were estimated, namely the infection rate, transition rate, recovery rate, and death rate, due to disease. In Dataset 1, the smallest error of GA method, namely 8.9%, occurred when the value of = 0.5, while the numerical error of PSO was 7.5%. In Dataset 2, the smallest error of GA method, namely 31.21%, occurred when = 0.5, while the numerical error of PSO was 3.46%. Conclusion: Based on the parameter estimation results for Datasets 1 and 2, PSO had better fitting results than GA. This showed PSO was more robust to the provided datasets and could better adapt to the trends of the COVID-19 epidemic. [ABSTRACT FROM AUTHOR]

The E/S (exposed/susceptible) ratio is analyzed in the SEIR model. The ratio plays a key role in understanding epidemic dynamics during the 2014–2016 Ebola outbreak in Sierra Leone and Guinea. The maximum value of the ratio occurs immediately before or after the time-dependent reproduction number (Rt) equals 1, depending on the initial susceptible population (S(0)). It is demonstrated that transmission rate curves corresponding to various incubation periods intersect at a single point referred to as the Cross Point (CP). At this point, the E/S ratio reaches an extremum, signifying a critical shift in transmission dynamics and aligning with the time when Rt approaches 1. By plotting transmission rate curves, β(t), for any two arbitrary incubation periods and tracking their intersections, we can trace CP over time. CP serves as an indicator of epidemic status, especially when Rt is close to 1. It provides a practical means of monitoring epidemics without prior knowledge of the incubation period. Through a case study, we estimate the transmission rate and reproduction number, identifying CP and Rt = 1 while examining the E/S ratio across various values of S(0). [ABSTRACT FROM AUTHOR]

In this study, the infiltration model was established to study the early warning of pulmonary tuberculosis data in Xiamen public hospitals. Based on the gender characteristics of residents in Xiamen, a percolation model was established to analyze the transmission rates of diseases under different contact types. In addition, the calculation method of the percolation threshold is discussed, and the model is verified by a simulation experiment. The results show that the model can predict the spread of epidemic situations well. The early warning value and relevant preventive measures were obtained by simulating the spread of tuberculosis under different exposure numbers. Bond percolation analysis was used to predict the proportion of the eventually infected population, this threshold of percolation was the basic regeneration number of tuberculosis, and the tuberculosis infection situation was effectively predicted. [ABSTRACT FROM AUTHOR]

Current global COVID-19 booster scheduling strategies mainly focus on vaccinating high-risk populations at predetermined intervals. However, these strategies overlook key data: the direct insights into individual immunity levels from active serological testing and the indirect information available either through sample-based sero-surveillance, or vital demographic, location, and epidemiological factors. Our research, employing an age-, risk-, and region-structured mathematical model of disease transmission—based on COVID-19 incidence and vaccination data from Israel between 15 May 2020 and 25 October 2021—reveals that a more comprehensive strategy integrating these elements can significantly reduce COVID-19 hospitalizations without increasing existing booster coverage. Notably, the effective use of indirect information alone can considerably decrease COVID-19 cases and hospitalizations, without the need for additional vaccine doses. This approach may also be applicable in optimizing vaccination strategies for other infectious diseases, including influenza. [ABSTRACT FROM AUTHOR]

This paper is concerned with solving the problem of identifying the control vector problem for a fractional multi-order system of nonlinear ordinary differential equations (ODEs). We describe a quasilinearization approach, based on minimization of a quadratic functional, to compute the values of the unknown parameter vector. Numerical algorithm combining the method with appropriate fractional derivative approximation on graded mesh is applied to SIS and SEIR problems to illustrate the efficiency and accuracy. Tikhonov regularization is implemented to improve the convergence. Results from computations, both with noisy-free and noisy data, are provided and discussed. Simulations with real data are also performed. [ABSTRACT FROM AUTHOR]

In recent years, social media has emerged as an important channel for the dissemination of destination branding. Despite the fact that the dissemination of information through social media enables a broader audience to become acquainted with destinations, the dissemination process of trending events exhibits variances. Consequently, the precise impact of the underlying mechanisms that govern the spread of information on the efficacy of disseminating destination brand trending events remains ambiguous. In an endeavor to bridge this gap, an improved SEIR model was developed in this research to investigate the dynamic dissemination mechanisms and influencing factors of destination trending events within social media. The model was applied to simulate the diffusion mechanism of destinations' trending events. The results show that during the dissemination process of destination trending events on social media, the proportion of users affected at different stages influences the ultimate effectiveness of information propagation. In light of these insights, this research proposes a social media trending event dissemination strategy to aid in enhancing the propagation efficiency of destination brands through existing resources. [ABSTRACT FROM AUTHOR]

With the development of the healthcare industry, the demand for medical services and protective equipment is boosted, causing the generation rate of infectious medical waste to increase rapidly. Therefore, it is of utmost importance for decision makers to effectively predict the potential risks and propose corresponding solutions. This paper investigates the reverse logistics network optimization for medical waste under the conditions of an uncertain proposal demand. Firstly, a prediction model of medical waste based on the SEIR epidemiological dynamics is constructed, in which both routine and public health emergency scenarios are simultaneously considered. Secondly, a bi-objective location-routing optimization model for a medical waste reverse logistics network is proposed, by simultaneously optimizing the total economic cost and potential risk throughout the entire logistics process. Subsequently, an NSGA-II algorithm is designed for a model solution in response to the model's characteristics. The epidemiological dynamics-based prediction model is validated by the real case to be scientifically effective in predicting the amount of generated medical waste with a mean absolute percentage error (MAPE) of 18.08%. The constructed reverse logistics network model and the NSGA II algorithm provide a medical waste process center location, transportation routing, and vehicle selection solutions for both routine and emergency public health cases of Xi'an city with large, medium, and small scales. The above results indicate that the research scheme proposed in this paper could significantly reduce the medical waste logistics-related risks and costs and provide decision makers with more safe and reliable logistical solutions. [ABSTRACT FROM AUTHOR]

Mathematical modelling based on the compartmental Susceptible – Exposed – Infected - Recovered (SEIR) model is proposed in this paper to study the pandemic outbreak. In addition, simulations from both the deterministic approach as well as the stochastic approach are implemented to validate the present study. Among each state, the transitions between different categories are simulated by using various graph models including the complete graph, the steady Erdos-Renyi graph, as well as the varying Erdos-Renyi graph. The related parameters for the SEIR model are chosen from available literature and the effect of some other factors such as the inflow or outflow of travellers in a city as well as the impact of vaccination rate is explored. Furthermore, the difference between the simulation results coming from the deterministic SEIR model and the stochastic SEIR one is examined to check the availability of the present simulation. It is found that, the stochastic simulation based on the complete graph is more consistent with the deterministic SEIR model.

This study focuses on the cutting-edge field of epidemic modeling, providing a comprehensive investigation of a third-order two-stage numerical approach combined with neural network simulations for the SEIR (Susceptible-Exposed-Infectious-Removed) epidemic model. An explicit numerical scheme is proposed in this work for dealing with both linear and nonlinear boundary value problems. The scheme is built on two grid points, or two time levels, and is third-order. The main advantage of the scheme is its order of accuracy in two stages. Third-order precision is not only not provided by most existing explicit numerical approaches in two phases, but it also necessitates the computation of an additional derivative of the dependent variable. The proposed scheme's consistency and stability are also examined and presented. Nonlinear SEIR (susceptible-exposed-infected-recovered) models are used to implement the scheme. The scheme is compared with the non-standard finite difference and forward Euler methods that are already in use. The graph shows that the plan is more accurate than non-standard finite difference and forward Euler methods that are already in use. The solution obtained is then looked at through the lens of the neural network. The neural network is trained using an optimization approach known as the Levenberg-Marquardt backpropagation (LMB) algorithm. The mean square error across the total number of iterations, error histograms, and regression plots are the various graphs that can be created from this process. This work conducts thorough evaluations to not only identify the strengths and weaknesses of the suggested approach but also to examine its implications for public health intervention. The results of this study make a valuable contribution to the continuously developing field of epidemic modeling. They emphasize the importance of employing modern numerical techniques and machine learning algorithms to enhance our capacity to predict and effectively control infectious diseases. Doi: 10.28991/ESJ-2024-08-01-023 Full Text: PDF

This paper explores the impact of various distancing measures on the spread of infectious diseases, focusing on the spread of COVID-19 in the Moroccan population as a case study. Contact matrices, generated through a social force model, capture population interactions within distinct activity locations and age groups. These matrices, tailored for each distancing scenario, have been incorporated into an SEIR model. The study models the region as a network of interconnected activity locations, enabling flexible analysis of the effects of different distancing measures within social contexts and between age groups. Additionally, the method assesses the influence of measures targeting potential superspreaders (i.e., agents with a very high contact rate) and explores the impact of inter-activity location flows, providing insights beyond scalar contact rates or survey-based contact matrices. The results suggest that implementing intra-activity location distancing measures significantly reduces in the number of infected individuals relative to the act of imposing restrictions on individuals with a high contact rate in each activity location. The combination of both measures proves more advantageous. On a regional scale, characterized as a network of interconnected activity locations, restrictions on the movement of individuals with high contact rates was found to result in a $ 2 \% $ reduction, while intra-activity location-based distancing measures was found to achieve a $ 44 \% $ reduction. The combination of these two measures yielded a $ 48\% $ reduction.

Epidemiologists have used the timing of the peak of an epidemic to guide public health interventions. By determining the expected peak time, they can allocate resources effectively and implement measures such as quarantine, vaccination, and treatment at the right time to mitigate the spread of the disease. The peak time also provides valuable information for those modeling the spread of the epidemic and making predictions about its future trajectory. In this study, we analyze the time needed for an epidemic to reach its peak by presenting a straightforward analytical expression. Utilizing two epidemiological models, the first is a generalized $ SEIR $ model with two classes of latent individuals, while the second incorporates a continuous age structure for latent infections. We confirm the conjecture that the peak occurs at approximately $ T\sim(\ln N)/\lambda $, where $ N $ is the population size and $ \lambda $ is the largest eigenvalue of the linearized system in the first model or the unique positive root of the characteristic equation in the second model. Our analytical results are compared to numerical solutions and shown to be in good agreement.

In this work, we investigate the transmission dynamics of the Zika virus, considering both a compartmental model involving humans and mosquitoes and an extended model that introduces a non-human primate (monkey) as a second reservoir host. The novelty of our approach lies in the later generalization of the model using a fractional time derivative. The significance of this study is underscored by its contribution to understanding the complex dynamics of Zika virus transmission. Unlike previous studies, we incorporate a non-human primate reservoir host into the model, providing a more comprehensive representation of the disease spread. Our results reveal the importance of utilizing a nonstandard finite difference (NSFD) scheme to simulate the disease's dynamics accurately. This NSFD scheme ensures the positivity of the solution and captures the correct asymptotic behavior, addressing a crucial limitation of standard solvers like the Runge-Kutta Fehlberg method (ode45). The numerical simulations vividly demonstrate the advantages of our approach, particularly in terms of positivity preservation, offering a more reliable depiction of Zika virus transmission dynamics. From these findings, we draw the conclusion that considering a non-human primate reservoir host and employing an NSFD scheme significantly enhances the accuracy and reliability of modeling Zika virus transmission. Researchers and policymakers can use these insights to develop more effective strategies for disease control and prevention.

AbstractVaccines suppress the increased spread of infectious diseases or the number of severe cases. Considerable research and development yielded several vaccines against coronavirus disease 2019 (COVID-19). To contain the disease, governments have run vaccination campaigns and implemented restrictions depending on vaccination status. Ensuring the stability of vaccine supply with increased and/or seasonal demand has thus become critical. However, determination of the required vaccine supply is difficult due to variations in virus mutations, their impacts on the disease, and vaccine efficacy. In this work, we developed a mathematical model to consider the effect of vaccination on the infection numbers, taking COVID-19 as a case study. We have conducted a sensitivity analysis to identify the key variables affecting the required vaccine supply. We have conducted a scenario analysis to assess the impact of changes in vaccine supply parameters on the number of severe cases in Japan. Production of different products at dual-use facilities has been suggested to tackle the variability in vaccine demand. The analysis provided insights into the feasibility and adequate timing for product-switch at dual-use facilities. The proposed method can be applied to other infectious diseases and can be expanded to support various aspects for decision-making for policy building.

Distributing scarce resources such as COVID-19 vaccines is often a highly time-sensitive and mission-critical operation. Our research was prompted by a significant obstacle that the United States and other nations encountered during the early months of the COVID-19 vaccination campaign: Most COVID-19 vaccines require two doses given 3 or 4 weeks apart. Given the severely limited supply and mounting pressure on many countries to reduce hospitalizations and mortality, how to effectively roll out two-dose vaccines was a critical policy decision. In this paper, we first model and analyze inventory dynamics of the rollout process under three rollout strategies: (1) holding back second doses, (2) releasing second doses, and (3) stretching the lead time between doses. Then we develop an SEIR (susceptible, exposed, infectious, recovered) model that incorporates COVID-19 asymptomatic and symptomatic infections to evaluate these strategies in terms of infections, hospitalizations, and mortality. Among our findings, we show releasing second doses reduces infections but creates uneven vaccination patterns. In addition, to ensure second doses are given on time without holding back inventory, strictly less than half of the supply can be allocated to first-dose appointments. Stretching the between-dose lead time flattens the infection curve and reduces both hospitalizations and mortality compared with the strategy of releasing second doses. We also consider an alternative single-dose vaccine with lower efficacy and show that the vaccine can be more effective than its two-dose counterparts in reducing infections and mortality. We conduct extensive sensitivity analyses related to age composition, risk-based prioritization, supply disruptions, and disease transmissibility. Our paper provides important implications for policymakers to develop effective vaccine rollout strategies in developed and developing countries alike. More broadly, our paper sheds light on how to develop effective operations strategies for distributing time-sensitive resources in times of crisis.

When humanity faces a potentially contagious disease, most processes of society are affected, the workforce capable of performing tasks decreases, and healthcare systems become overwhelmed by sudden disease outbreaks. In 2020, the world fell victim to Covid-19. Its spread had devastating consequences in many countries, changing the lives of all individuals. The poor management of the pandemic on a global scale highlighted the lack of preparedness for this type of catastrophe, leading to efforts and research being conducted to facilitate the management of this disease. One of the most important endeavors undertaken to control the spread of the infectious virus was to attempt to predict its behavior and take measures to mitigate the damage caused. Pandemic control models, such as the SEIR model, were employed to create predictions, but the results proved to be imprecise due to the lack of infection data. Furthermore, a highly contagious virus that is transmitted by people behaves in a very erratic manner, making it more challenging to develop rigid prediction methods. It was determined that geographic and demographic characteristics greatly influenced the virus's behavior. Agent-Based Simulation was used to model processes and environments with unique characteristics while allowing for individual interaction. In this work, Agent-Based Simulation is employed to model the spread of a virus that affects individuals in a city in Cuba. [ABSTRACT FROM AUTHOR]

In this research, we present the first steps toward developing a data-driven agent-based model (ABM) specifically designed for simulating infectious disease dynamics in Greece. Amidst the ongoing COVID-19 pandemic caused by SARS-CoV-2, this research holds significant importance as it can offer valuable insights into disease transmission patterns and assist in devising effective intervention strategies. To the best of our knowledge, no similar study has been conducted in Greece. We constructed a prototype ABM that utilizes publicly accessible data to accurately represent the complex interactions and dynamics of disease spread in the Greek population. By incorporating demographic information and behavioral patterns, our model captures the specific characteristics of Greece, enabling accurate and context-specific simulations. By using our proposed ABM, we aim to assist policymakers in making informed decisions regarding disease control and prevention. Through the use of simulations, policymakers have the opportunity to explore different scenarios and predict the possible results of various intervention measures. These may include strategies like testing approaches, contact tracing, vaccination campaigns, and social distancing measures. Through these simulations, policymakers can assess the effectiveness and feasibility of these interventions, leading to the development of well-informed strategies aimed at reducing the impact of infectious diseases on the Greek population. This study is an initial exploration toward understanding disease transmission patterns and a first step towards formulating effective intervention strategies for Greece. [ABSTRACT FROM AUTHOR]

This paper aims to develop a stochastic perturbation into SEIR (Susceptible-Exposed-Infected-Removed) epidemic model including a saturated estimated incidence. A set of stochastic differential equations is used to study its behavior, with the assumption that each population's exposure to environmental unpredictability is represented by noise terms. This kind of randomness is considerably more reasonable and realistic in the proposed model. The current study has been viewed as strengthening the body of literature because there is less research on the dynamics of this kind of model. We discussed the structure of all equilibriums' existence and the dynamical behavior of all the steady states. The fundamental replication number for the proposed method was used to discuss the stability of every equilibrium point; if R0 < 1, the infected free equilibrium is resilient, and if R0 < 1, the endemic equilibrium is resilient. The system's value is primarily described by its ambient stochasticity, which takes the form of Gaussian white noise. Additionally, the suggested model can offer helpful data for comprehending, forecasting, and controlling the spread of various epidemics globally. Numerical simulations are run for a hypothetical set of parameter values to back up our analytical conclusions. [ABSTRACT FROM AUTHOR]

A local COVID-19 outbreak with two community clusters occurred in a large industrial city, Shaoxing, China, in December 2021 after serial interventions were imposed. We aimed to understand the reason by analysing the characteristics of the outbreak and evaluating the effects of phase-adjusted interventions. Publicly available data from 7 December 2021 to 25 January 2022 were collected to analyse the epidemiological characteristics of this outbreak. The incubation period was estimated using Hamiltonian Monte Carlo method. A well-fitted extended susceptible-exposed-infectious-recovered model was used to simulate the impact of different interventions under various combination of scenarios. There were 387 SARS-CoV-2-infected cases identified, and 8.3% of them were initially diagnosed as asymptomatic cases. The estimated incubation period was 5.4 (95% CI 5.2–5.7) days for all patients. Strengthened measures of comprehensive quarantine based on tracing led to less infections and a shorter duration of epidemic. With a same period of incubation, comprehensive quarantine was more effective in containing the transmission than other interventions. Our findings reveal an important role of tracing and comprehensive quarantine in blocking community spread when a cluster occurred. Regions with tense resources can adopt home quarantine as a relatively affordable and low-impact intervention measure compared with centralized quarantine. [ABSTRACT FROM AUTHOR]

This study introduces a novel fractional-order spatio-temporal SEIR model for epidemic modeling, providing an advanced approach to understanding disease dynamics. Our model, categorizing the population into Susceptible (S), Exposed (E), Infected (I), and Recovered (R), incorporates fractional calculus to accurately reflect the complex, non-linear nature of infectious diseases. Key findings include the confirmation of the existence and uniqueness of the model’s solutions, ensuring reliability for epidemiological predictions. Through rigorous stability analysis at both disease-free and endemic equilibrium points, we identified critical parameters influencing epidemic outcomes. Numerical simulations reveal that the fractional order significantly impacts disease progression, offering valuable insights for intervention strategies.

Outbreaks of COVID-19 in meat processing plants (MPPs) were recorded globally throughout the pandemic. There was speculation these outbreaks resulted in dissemination of COVID-19 throughout the surrounding county leading to high incidence rates. We aimed to investigate the dynamics of spread between MPPs and their surrounding counties. In this retrospective longitudinal study, data were collected on the number and size of outbreaks in 33 MPPs and county infections in Ireland between March 2020 and May 2021. These data were used to investigate the relationship between outbreaks in MPPs and county infection rates through statistical analysis, and the development of a novel SEIR model. We found an association between the number of MPPs present in a county and county incidence rates, however, incidence rates in the counties did not increase as a consequence of an outbreak in an MPP. The model results indicate that county incidence rates in the weeks prior to an MPP outbreak could reliably predict the size of that outbreak in a plant, r(49) = 0·62, p

Pharmaceuticals play a critical role in the eradication of infectious diseases. Effective pharmaceutical inventory management is important for controlling epidemics since medical resources such as pharmaceuticals, medical staff, and hospitals are limited. In this study, a novel epidemiological model is proposed to evaluate the resource requirements for pharmaceuticals and is applied to analyze different pharmaceutical inventory management strategies. We formulate the relationship between the number of infected individuals and the risk of infection to account for virus mutation. Evolutionary game theory is integrated into an epidemiological model to represent human behavioral choices. The proposed model can be developed to forecast the demand for pharmaceuticals and analyze how human behavior affects the demand of pharmaceuticals. This study found that making people aware of the risk of disease has a positive impact on both reducing the number of infections and managing the pharmaceutical inventory. The main contribution of this study is to enhance areas of research in pharmaceutical inventory management. This study revealed that the correct recognition of the risk of disease leads to appropriate pharmaceutical management. There are a few studies on the application of infectious disease models to inventory control problems. This study provides clues toward proper pharmaceutical management. [ABSTRACT FROM AUTHOR]

In construction engineering safety management, the problem of construction workers' unsafe behavior (CWUB) has always been a focus for researchers as well as practice managers. Currently, most studies focus on the influencing factors and mechanisms of (CWUB), with less attention given to the dissemination process and control effects of CWUB. Therefore, this paper aims to investigate a safety control detection system for the transmission process. The heterogeneous cellular automaton (CA) has advantages in constructing such a system as it can reflect the interactive processes of construction workers from micro to macro, local to global, and consider the heterogeneity of individuals and space, satisfying unequal interaction probabilities between individuals and spatial variations in characteristics. The SEIR model accurately categorizes construction workers and visually represents the changing quantities of different state groups at each stage. It effectively describes the process of CWUB transmission among construction workers. Based on the aforementioned foundation, a safety control and monitoring system was proposed for the implementation stages of the project. Finally, the control detection system is simulated to assess its effectiveness. Simulation results closely align with reality, showing a continuous decrease in susceptible individuals, a peak followed by a rapid decline in latent and infected individuals, and a steady increase in immune individuals. To control CWUB transmission, it is crucial to enhance immunity against unsafe behaviors, reduce the rate of immunity conversion, and shorten the disease cycle caused by such behaviors. This research has practical implications for construction projects. [ABSTRACT FROM AUTHOR]

The rapid development of social media and information dissemination has profoundly affected the ideology and value orientation of college students and put forward new challenges and requirements for ideological education work in colleges and universities. This paper takes the characteristics of social media as an orientation, studies the problems of ideological education in colleges and universities, and carries out a SWOT analysis of ideological education under the influence of social media. Based on social media, we constructed a complex network, gave a measure of its network topological characteristics, and then combined it with the classical information dissemination model to establish a SEIR information dissemination model of Civic and Political Education in colleges under the influence of social media. Taking the “Tang Palace Night Banquet” in Province H and the Civic and Political Education Skills Competition in University H as research objects, we analyzed the characteristics of the social network of Civic and Political Education information and verified the explanatory ability of the SEIR model in the dissemination of Civic and Political Education information in colleges and universities. People’s Daily has the highest incidence value and middle centrality of 63 and 72 in social media networks, and its middle centrality is 28.57% higher than that of Henan Satellite TV. The SEIR model tends to stabilize on the 180th day of the evolution, when the refusers of the dissemination of information on civic and political education are 700, and the disseminators are 300. Social media can expand the content of Civic Education in colleges and universities, combined with diverse star network nodes, can enhance the ability of Civic Education in colleges and universities, and improve the level of students’ Civic Education.

Abstract Background With the global spread of COVID-19, detecting high-risk countries/regions timely and dynamically is essential; therefore, we sought to develop automatic, quantitative and scalable analysis methods to observe and estimate COVID-19 spread worldwide and further generate reliable and timely decision-making support for public health management using a comprehensive modeling method based on multiple mathematical models. Methods We collected global COVID-19 epidemic data reported from January 23 to September 30, 2020, to observe and estimate its possible spread trends. Countries were divided into three outbreak levels: high, middle, and low. Trends analysis was performed by calculating the growth rate, and then country grouping was implemented using group-based trajectory modeling on the three levels. Individual countries from each group were also chosen to further disclose the outbreak situations using two predicting models: the logistic growth model and the SEIR model. Results All 187 observed countries' trajectory subgroups were identified using two grouping strategies: with and without population consideration. By measuring epidemic trends and predicting the epidemic size and peak of individual countries, our study found that the logistic growth model generally estimated a smaller epidemic size than the SEIR model. According to SEIR modeling, confirmed cases in each country would take an average of 9–12 months to reach the outbreak peak from the day the first case occurred. Additionally, the average number of cases at the peak time will reach approximately 10–20% of the countries’ populations, and the countries with high trends and a high predicted size must pay special attention and implement public health interventions in a timely manner. Conclusions We demonstrated comprehensive observations and predictions of the COVID-19 outbreak in 187 countries using a comprehensive modeling method. The methods proposed in this study can measure COVID-19 development from multiple perspectives and are generalizable to other epidemic diseases. Furthermore, the methods also provide reliable and timely decision-making support for public health management.

Media coverage can greatly impact the spread of infectious diseases. Taking into consideration the impacts of media coverage, we propose an SEIR model with a media coverage mediated nonlinear infection force. For this novel disease model, we identify the basic reproduction number using the next generation matrix method and establish the global threshold results: If the basic reproduction number $ \mathcal{R}_{0} < 1 $, then the disease-free equilibrium $ P_{0} $ is stable, and the disease dies out. If $ \mathcal{R}_{0} > 1 $, then the endemic equilibrium $ P^{*} $ is stable, and the disease persists. Sensitivity analysis indicates that the basic reproduction number $ \mathcal{R}_{0} $ is most sensitive to the population recruitment rate $ \Lambda $ and the disease transmission rate $ \beta _{1} $.

In this work, we developed, validated, and analysed the behaviour of a compartmental model of COVID-19 transmission in Saudi Arabia. The population was structured into four classes: susceptible (S), exposed (E), infectious (I), and removed (R) individuals. This SEIR model assumes a bilinear incidence rate and a nonlinear recovery rate that depends on the quality of health services. The model also considers a treatment function and incorporates the effect of fear due to the disease. We derived the expression of the basic reproduction number and the equilibrium points of the model and demonstrated that when the reproduction number is less than one, the disease-free equilibrium is stable, and the model predicts a backward bifurcation. We further found that when the reproduction number is larger than one, the model predicts stable periodic behaviour. Finally, we used numerical simulations with parameter values fitted to Saudi Arabia to analyse the effects of the model parameters on the model-predicted dynamic behaviours.

In recent years, social media has emerged as an important channel for the dissemination of destination branding. Despite the fact that the dissemination of information through social media enables a broader audience to become acquainted with destinations, the dissemination process of trending events exhibits variances. Consequently, the precise impact of the underlying mechanisms that govern the spread of information on the efficacy of disseminating destination brand trending events remains ambiguous. In an endeavor to bridge this gap, an improved SEIR model was developed in this research to investigate the dynamic dissemination mechanisms and influencing factors of destination trending events within social media. The model was applied to simulate the diffusion mechanism of destinations’ trending events. The results show that during the dissemination process of destination trending events on social media, the proportion of users affected at different stages influences the ultimate effectiveness of information propagation. In light of these insights, this research proposes a social media trending event dissemination strategy to aid in enhancing the propagation efficiency of destination brands through existing resources.

Background: Several countries used varied degrees of social isolation measures in response to the COVID-19 outbreak. In 2021, the lockdown in Thailand began on July 20 and lasted for the following six weeks. The lockdown has extremely detrimental effects on the economy and society, even though it may reduce the number of COVID-19 instances. Our goals are to assess the impact of the lockdown policy, the commencement time of lockdown, and the vaccination rate on the number of COVID-19 cases in Thailand in 2021. Methods: We modeled the dynamics of COVID-19 in Thailand throughout 2021 using the SEIR model. The Google Mobility Index, vaccine distribution rate, and lockdown were added to the model. The Google Mobility Index represents the movement of individuals during a pandemic and shows how people react to lockdown. The model also examines the effect of vaccination rate on the incidence of COVID-19. Results: The modeling approach demonstrates that a 6-week lockdown decreases the incidence number of COVID-19 by approximately 15.49–18.17%, depending on the timing of the lockdown compared to a non-lockdown scenario. An increasing vaccination rate potentially reduce the incidence number of COVID-19 by 5.12–18.35% without launching a lockdown. Conclusion: Lockdowns can be an effective method to slow down the spread of COVID-19 when the vaccination program is not fully functional. When the vaccines are easily accessible on a large scale, the lockdown may terminated.

In this study, optimal control problem for a fractional SEIR epidemiological model under the effect of bilinear and saturate incidence rate functions is investigated. These rates play an important role in the realistic modeling of an epidemic by describing the interaction between susceptible and infected individuals of a population. This interaction is highly decisive in whether the disease will turn into a pandemic or not. Therefore, these functions can be defined in different forms depending on the course of the epidemic. The model discussed in this study is defined in terms of Caputo. Dimensional compatibility is guaranteed before posing the optimal control problem. The main objective of the proposed optimal control problem is to minimize the number of infected individuals and the cost of education given to susceptible individuals as a preventive measure. Euler-Lagrange equations corresponding to the optimality conditions of the considered model are first determined by Hamiltonian’s formalism. Afterward, the optimal system with right and left fractional Caputo derivatives are solved numerically by the forward-backward sweep method combined with the fractional Euler method. Optimal solutions are interpreted graphically for varying values of the incidence rate coefficients and the fractional parameter. According to the simulation results, it is seen that the education given to susceptible individuals is significantly effective in slowing down the epidemic.

Abstract Background From March to June 2022, an Omicron BA.2 epidemic occurred in Shanghai. We aimed to better understand the transmission dynamics and identify age-specific transmission characteristics for the epidemic. Methods Data on COVID-19 cases were collected from the Shanghai Municipal Health Commission during the period from 20th February to 1st June. The effective reproductive number (Rt) and transmission distance between cases were calculated. An age-structured SEIR model with social contact patterns was developed to reconstruct the transmission dynamics and evaluate age-specific transmission characteristics. Least square method was used to calibrate the model. Basic reproduction number (R0) was estimated with next generation matrix. Results R0 of Omicron variant was 7.9 (95% CI: 7.4 to 8.4). With strict interventions, Rt had dropped quickly from 3.6 (95% CI: 2.7 to 4.7) on 4th March to below 1 on 18th April. The mean transmission distance of the Omicron epidemic in Shanghai was 13.4 km (95% CI: 11.1 to 15.8 km), which was threefold longer compared with that of epidemic caused by the wild-type virus in Wuhan, China. The model estimated that there would have been a total 870,845 (95% CI: 815,400 to 926,289) cases for the epidemic from 20th February to 15th June, and 27.7% (95% CI: 24.4% to 30.9%) cases would have been unascertained. People aged 50–59 years had the highest transmission risk 0.216 (95% CI: 0.210 to 0.222), and the highest secondary attack rate (47.62%, 95% CI: 38.71% to 56.53%). Conclusions The Omicron variant spread more quickly and widely than other variants and resulted in about one third cases unascertained for the recent outbreak in Shanghai. Prioritizing isolation and screening of people aged 40–59 might suppress the epidemic more effectively. Routine surveillance among people aged 40–59 years could also provide insight into the stage of the epidemic and the timely detection of new variants. Trial registration We did not involve clinical trial.

With multiple time delays, we investigated a Caputo fractional order dynamical system involving susceptible, exposed, infected, and recovered individuals. Positivity and boundedness are also theoretically demonstrated using Laplace transform and Mittag-Leffler function. The stability of the disease-free and epidemic equilibrium points has been studied for both delayed and non-delayed model. For generating numerical solutions to the model system, we used the Adam-Bashforth-Moulton predictor-corrector technique. With the help of MATLAB (2018a), we were able to conduct graphical demonstrations and numerical simulations. The system displays Hopf bifurcation and the solutions are no longer periodic beyond a certain threshold value of the time delay parameters.

Background: With the global spread of COVID-19, detecting high-risk countries/regions timely and dynamically is essential; therefore, we sought to develop automatic, quantitative and scalable analysis methods to observe and estimate COVID-19 spread worldwide and further generate reliable and timely decision-making support for public health management using a comprehensive modeling method based on multiple mathematical models. Methods: We collected global COVID-19 epidemic data reported from January 23 to September 30, 2020, to observe and estimate its possible spread trends. Countries were divided into three outbreak levels: high, middle, and low. Trends analysis was performed by calculating the growth rate, and then country grouping was implemented using group-based trajectory modeling on the three levels. Individual countries from each group were also chosen to further disclose the outbreak situations using two predicting models: the logistic growth model and the SEIR model. Results: All 187 observed countries' trajectory subgroups were identified using two grouping strategies: with and without population consideration. By measuring epidemic trends and predicting the epidemic size and peak of individual countries, our study found that the logistic growth model generally estimated a smaller epidemic size than the SEIR model. According to SEIR modeling, confirmed cases in each country would take an average of 9–12 months to reach the outbreak peak from the day the first case occurred. Additionally, the average number of cases at the peak time will reach approximately 10–20% of the countries' populations, and the countries with high trends and a high predicted size must pay special attention and implement public health interventions in a timely manner. Conclusions: We demonstrated comprehensive observations and predictions of the COVID-19 outbreak in 187 countries using a comprehensive modeling method. The methods proposed in this study can measure COVID-19 development from multiple perspectives and are generalizable to other epidemic diseases. Furthermore, the methods also provide reliable and timely decision-making support for public health management. [ABSTRACT FROM AUTHOR]

This paper establishes a novel fractional-order version of a recently expanded form of the Susceptible-Exposed-Infectious-Recovery (SEIR) Mpox model. This model is investigated by means of demonstrating some significant findings connected with the stability analysis and the vaccination impact, as well. In particular, we analyze the fractional-order Mpox model in terms of its invariant region, boundedness of solution, equilibria, basic reproductive number, and its elasticity. In accordance with an effective vaccine, we study the progression and dynamics of the Mpox disease in compliance with various scenarios of the vaccination ratio through the proposed fractional-order Mpox model. Accordingly, several numerical findings of the proposed model are depicted with the use of two numerical methods; the Fractional Euler Method (FEM) and Modified Fractional Euler Method (MFEM). Such findings demonstrate the influence of the fractional-order values coupled with the vaccination rate on the dynamics of the established disease model. [ABSTRACT FROM AUTHOR]

For solving first-order linear and nonlinear differential equations, a new two-stage implicit–explicit approach is given. The scheme's first stage, or predictor stage, is implicit, while the scheme's second stage is explicit. The first stage of the proposed scheme is an extended form of the existing Runge–Kutta scheme. The scheme's stability and consistency are also offered. In two phases, the technique achieves third-order accuracy. The method is applied to the SEIR epidemic model with a convex incidence rate. The local stability is also examined. The technique is evaluated compared to existing Euler and nonstandard finite difference methods. In terms of accuracy, the produced plots show that the suggested scheme outperforms the existing Euler and nonstandard finite difference methods. Furthermore, a neural network technique is being considered to map the relationship between time and the amount of susceptible, exposed, and infected people. [ABSTRACT FROM AUTHOR]

Abstract Background Mpox is an emerging infectious disease that is now a global hazard. The strategies for preventing and controlling mpox should be further investigated in terms of transmission characteristics, infection risk among different populations, and ideal therapeutic approaches. Methods A multi-group dynamic model was used to quantify the transmissibility of mpox. We further analyzed the transmission risk from men who have sex with men (MSM) to non-MSM and evaluated the effects of three intervention measures, including community-based prevention, early detection, and vaccination. Results The median value of effective reproduction number (R eff ) and probability of contact via a single contact (q) among MSM worldwide is 3.11 (interquartile range [IQR]: 2.82–5.57) and 2.15% (IQR: 1.95–3.84%). We found that the cumulative incidence rate of non-MSM is much lower than that of MSM (

In this research, we present the first steps toward developing a data-driven agent-based model (ABM) specifically designed for simulating infectious disease dynamics in Greece. Amidst the ongoing COVID-19 pandemic caused by SARS-CoV-2, this research holds significant importance as it can offer valuable insights into disease transmission patterns and assist in devising effective intervention strategies. To the best of our knowledge, no similar study has been conducted in Greece. We constructed a prototype ABM that utilizes publicly accessible data to accurately represent the complex interactions and dynamics of disease spread in the Greek population. By incorporating demographic information and behavioral patterns, our model captures the specific characteristics of Greece, enabling accurate and context-specific simulations. By using our proposed ABM, we aim to assist policymakers in making informed decisions regarding disease control and prevention. Through the use of simulations, policymakers have the opportunity to explore different scenarios and predict the possible results of various intervention measures. These may include strategies like testing approaches, contact tracing, vaccination campaigns, and social distancing measures. Through these simulations, policymakers can assess the effectiveness and feasibility of these interventions, leading to the development of well-informed strategies aimed at reducing the impact of infectious diseases on the Greek population. This study is an initial exploration toward understanding disease transmission patterns and a first step towards formulating effective intervention strategies for Greece.

Whereas the extent of outbreak of COVID-19 is usually accessed via the number of reported cases and the number of patients succumbed to the disease, the officially recorded overall excess mortality numbers during the pandemic waves, which are significant and often followed the rise and fall of the pandemic waves, put a question mark on the above methodology. Gradually it has been recognized that estimating the size of the undiagnosed population (which includes asymptomatic cases and symptomatic cases but not reported) is also crucial. Here we used the classical mathematical SEIR model having an additional compartment, that is the undiagnosed group in addition to the susceptible, exposed, diagnosed, recovered and deceased groups, to link the undiagnosed COVID-19 cases to the reported excess mortality numbers and thereby try to know the actual size of the disease outbreak. The developed model wase successfully applied to relevant COVID-19 waves in USA (initial months of 2020), South Africa (mid of 2021) and Russia (2020–21) when a large discrepancy between the reported COVID-19 mortality and the overall excess mortality had been noticed.

This study aimed to predict the transmission trajectory of the 2019 Corona Virus Disease (COVID-19) and analyze the impact of preventive measures on the spread of the epidemic. Considering that tracking a long-term epidemic trajectory requires explanatory modeling with more complexities than short-term predictions, an improved Susceptible-Exposed-Infected-Removed (SEIR) transmission dynamic model is established. The model depends on defining various parameters that describe both the virus and the population under study. However, it is likely that several of these parameters will exhibit significant variations among different states. Therefore, regression algorithms and heuristic algorithms were developed to effectively adapt the population–dependent parameters and ensure accurate fitting of the SEIR model to data for any specific state. In this study, we consider the second outbreak of COVID-19 in Italy as a case study, which occurred in August 2020. We divide the epidemic data from February to September of the same year into two distinct stages for analysis. The numerical results demonstrate that the improved SEIR model effectively simulates and predicts the transmission trajectories of the Italian epidemic during both periods before and after the second outbreak. By analyzing the impact of anti-epidemic measures on the spread of the disease, our findings emphasize the significance of implementing anti-epidemic preventive measures in COVID-19 modeling.

The most extensively used mathematical models in epidemiology are the susceptible-exposed-infectious-recovered (SEIR) type models with constant coefficients. For the first wave of the COVID-19 epidemic, such models predict that at large times equilibrium is reached exponentially. However, epidemiological data from Europe suggest that this approach is algebraic. Indeed, accurate long-term predictions have been obtained via a forecasting model only if it uses an algebraic as opposed to the standard exponential formula. In this work, by allowing those parameters of the SEIR model that reflect behavioural aspects (e.g. spatial distancing) to vary nonlinearly with the extent of the epidemic, we construct a model which exhibits asymptoticly algebraic behaviour. Interestingly, the emerging power law is consistent with the typical dynamics observed in various social settings. In addition, using reliable epidemiological data, we solve in a numerically robust way the inverse problem of determining all model parameters characterizing our novel model. Finally, using deep learning, we demonstrate that the algebraic forecasting model used earlier is optimal.

Background: Several countries used varied degrees of social isolation measures in response to the COVID-19 outbreak. In 2021, the lockdown in Thailand began on July 20 and lasted for the following six weeks. The lockdown has extremely detrimental effects on the economy and society, even though it may reduce the number of COVID-19 instances. Our goals are to assess the impact of the lockdown policy, the commencement time of lockdown, and the vaccination rate on the number of COVID-19 cases in Thailand in 2021. Methods: We modeled the dynamics of COVID-19 in Thailand throughout 2021 using the SEIR model. The Google Mobility Index, vaccine distribution rate, and lockdown were added to the model. The Google Mobility Index represents the movement of individuals during a pandemic and shows how people react to lockdown. The model also examines the effect of vaccination rate on the incidence of COVID-19. Results: The modeling approach demonstrates that a 6-week lockdown decreases the incidence number of COVID-19 by approximately 15.49e18.17%, depending on the timing of the lockdown compared to a non-lockdown scenario. An increasing vaccination rate potentially reduce the incidence number of COVID-19 by 5.12e18.35% without launching a lockdown. Conclusion: Lockdowns can be an effective method to slow down the spread of COVID-19 when the vaccination program is not fully functional. When the vaccines are easily accessible on a large scale, the lockdown may terminated. [ABSTRACT FROM AUTHOR]

The COVID-19 pandemic is one of the most critical issues in the world today. Although many countries have been able to control the infection, much research is still needed to uncover the complex dynamics of virus transmission. This study aimed to utilize a mathematical model for analyzing epidemiological data of infectious diseases, aiming to comprehend their behavior, predict future trends, and investigate the influence of external factors on key indicators. This model extends the Susceptible-Exposed-Infected-Recovered (SEIR) framework by incorporating additional populations, such as vaccinated individuals, asymptomatic cases, and hospitalized patients. It also developed dynamics related to vaccination avoidance behavior and adherence to health protocols. It is coded in MATLAB 2018-b software and is executed for 360 days. The results of the simulation showed that it is not possible to achieve the desired level of immunity from vaccine injection without following health protocols. On the other hand, considering the level of infection, increasing the participation rate in receiving vaccines and reducing the population of vaccines can control the epidemic. Therefore, a change in social behavior and an increase in the amount of vaccination can increase the awareness of society in reducing the avoidance of vaccination and improving compliance with health protocols. [ABSTRACT FROM AUTHOR]

Background: From March to June 2022, an Omicron BA.2 epidemic occurred in Shanghai. We aimed to better understand the transmission dynamics and identify age-specific transmission characteristics for the epidemic. Methods: Data on COVID-19 cases were collected from the Shanghai Municipal Health Commission during the period from 20th February to 1st June. The effective reproductive number (Rt) and transmission distance between cases were calculated. An age-structured SEIR model with social contact patterns was developed to reconstruct the transmission dynamics and evaluate age-specific transmission characteristics. Least square method was used to calibrate the model. Basic reproduction number (R0) was estimated with next generation matrix. Results: R0 of Omicron variant was 7.9 (95% CI: 7.4 to 8.4). With strict interventions, Rt had dropped quickly from 3.6 (95% CI: 2.7 to 4.7) on 4th March to below 1 on 18th April. The mean transmission distance of the Omicron epidemic in Shanghai was 13.4 km (95% CI: 11.1 to 15.8 km), which was threefold longer compared with that of epidemic caused by the wild-type virus in Wuhan, China. The model estimated that there would have been a total 870,845 (95% CI: 815,400 to 926,289) cases for the epidemic from 20th February to 15th June, and 27.7% (95% CI: 24.4% to 30.9%) cases would have been unascertained. People aged 50–59 years had the highest transmission risk 0.216 (95% CI: 0.210 to 0.222), and the highest secondary attack rate (47.62%, 95% CI: 38.71% to 56.53%). Conclusions: The Omicron variant spread more quickly and widely than other variants and resulted in about one third cases unascertained for the recent outbreak in Shanghai. Prioritizing isolation and screening of people aged 40–59 might suppress the epidemic more effectively. Routine surveillance among people aged 40–59 years could also provide insight into the stage of the epidemic and the timely detection of new variants. Trial registration: We did not involve clinical trial. [ABSTRACT FROM AUTHOR]

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