15,111 results on '"North Carolina State University"'
Search Results
2. Effects of Low Dose Ozone on Airway Inflammatory Responses in Adults With Asthma - Sedentary Nasal Ozone (Asthma SNOZ)
- Author
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Environmental Protection Agency (EPA) and North Carolina State University
- Published
- 2024
3. ChangeGradients: Promoting Adolescent Health Behavior Change
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North Carolina State University
- Published
- 2024
4. Nutrition for Precision Health, Powered by the All of Us
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National Institutes of Health (NIH), University of North Carolina, Chapel Hill, Northwestern University, Illinois Institute of Technology, University of Chicago, Pennington Biomedical Research Center, Louisiana State University Health Sciences Center in New Orleans, University of California, Davis, University of California, Los Angeles, Cedars-Sinai Medical Center, University of Alabama at Birmingham, Tufts University, Massachusetts General Hospital, Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD), National Center for Advancing Translational Sciences (NCATS), National Cancer Institute (NCI), National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK), City University of New York, School of Public Health, Mayo Clinic, University of California, San Diego, University of Hawaii, Vanderbilt University Medical Center, National Heart, Lung, and Blood Institute (NHLBI), National Center for Complementary and Integrative Health (NCCIH), National Institute of Drug Abuse, Public Health Informatics Computational and Operations Research, University of Southern California, Cornell University, University of Alabama, Tuscaloosa, North Carolina State University, University of North Carolina, Charlotte, Duke University, Stevens Institute of Technology, Purdue University, United States Military Academy at West Point, USDA, Western Human Nutrition Research Center, North Carolina Central University, Wake Forest University Health Sciences, Boston University, Children's Hospital of Richmond, Virginia Commonwealth University, Verily Life Sciences LLC, Indiana University, Fred Hutchinson Cancer Center, Columbia University, and University of Pennsylvania
- Published
- 2024
5. Epilepsy Adherence in Children and Technology (eACT) (eACT)
- Author
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National Institute of Nursing Research (NINR), Medical University of South Carolina, Children's Hospital of Orange County, University of Cincinnati, Nationwide Children's Hospital, and North Carolina State University
- Published
- 2024
6. Social Media as a Risk Tool for HIV Prevention Needs (SMaaRT)
- Author
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Kenya Medical Research Institute, KEMRI-Wellcome Trust Collaborative Research Program, North Carolina State University, National Institute of Mental Health (NIMH), and Jessica Haberer, MD, Professor of Medicine, Director of Research
- Published
- 2024
7. Good Bowls: Eat Well At Work (EWAW)
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National Institutes of Health (NIH), University of North Carolina, Chapel Hill, University of North Carolina, Greensboro, and North Carolina State University
- Published
- 2024
8. Robot Aided Rehabilitation - Intervention (Aim2&3)
- Author
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National Institute on Disability, Independent Living, and Rehabilitation Research, North Carolina State University, and Li-Qun Zhang, Professor
- Published
- 2024
9. Robot Aided Rehabilitation - Multi-joint Evaluations (Aim1)
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National Institute on Disability, Independent Living, and Rehabilitation Research, North Carolina State University, and Li-Qun Zhang, Professor
- Published
- 2024
10. Orthognathic Speech Pathology: Phonetic Contrasts of Patients With Dental Discrepancies Pre- and Post-Treatment Analyses (OSP)
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North Carolina State University
- Published
- 2024
11. Broccoli Seed Extract and Skin Health
- Author
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North Carolina State University
- Published
- 2023
12. P3 Ghana Cookstove Study (P3)
- Author
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University of Colorado, Boulder, North Carolina State University, Navrongo Health Research Centre, Ghana, U.S. National Science Foundation, and National Institutes of Health (NIH)
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- 2023
13. Blueberry-protein Supplementation and Exercise
- Author
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SinnovaTek and North Carolina State University
- Published
- 2023
14. AllyQuest Adherence App Intervention for HIV-positive Men Who Have Sex With Men and Transgender Women: Pilot Trial (AQ2)
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National Institute of Mental Health (NIMH), Medical University of South Carolina, Wayne State University, Rutgers University, University of Alabama at Birmingham, and North Carolina State University
- Published
- 2023
15. Providing an Equal Opportunity for a Sound Basic Education in North Carolina's High-Poverty Schools: Assessing Needs and Opportunities. Sound Basic Education for All: An Action Plan for North Carolina
- Author
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WestEd, Learning Policy Institute, North Carolina State University, William & Ida Friday Institute for Educational Innovation, Oaks, Jeannie, Cookson, Peter W., Levin, Stephanie, Carver-Thomas, Desiree, Frelow, Fr, Berry, Barnett, Yang, Man, George, Janel, Brooks, Jennifer, and Guin, Swati
- Abstract
To inform the "Leandro v. State of North Carolina" Action Plan, the Learning Policy Institute examined the within-school and out-of-school barriers to obtaining a sound basic education facing students who attend North Carolina's high-poverty schools. High-poverty schools are schools where 75% or more students are at risk because their families' low incomes qualify them for federally subsidized free or reduced-cost meal programs at school. Because of the concentration of at-risk students at high-poverty schools, these schools deserve focused attention as the state seeks to remedy its failure to provide all students with a constitutionally required opportunity for a sound basic education. The primary goal of this study is to understand the experiences of students attending high-poverty schools. This report provides dozens of findings about the challenges to obtaining a sound basic education experienced by students attending high-poverty schools in North Carolina. Several overarching themes emerge from these findings that form a coherent narrative into which the specific findings and recommendations should be placed and interpreted. [For the research brief, "Adequate and Equitable Education in High-Poverty Schools: Barriers and Opportunities in North Carolina," see ED614422.]
- Published
- 2019
16. Educator Supply, Demand, and Quality in North Carolina: Current Status and Recommendations. Sound Basic Education for All: An Action Plan for North Carolina
- Author
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Learning Policy Institute, WestEd, North Carolina State University, College of Education, Darling-Hammond, Linda, Bastian, Kevin C., Berry, Barnett, Carver-Thomas, Desiree, Kini, Tara, Levin, Stephanie, and McDiarmid, William
- Abstract
In "Leandro v. the State of North Carolina" ("Leandro"), the Supreme Court of North Carolina found that children have a right to qualified teachers and principals who can prepare students for college and careers and meet the needs of those placed at risk. Providing such high-quality educators for each child demands an adequate supply that is equitably distributed, along with supports for ongoing professional learning that enables educators to meet children's needs. This study documents the current status of educator supply, demand, and quality in North Carolina for teachers and school leaders. It also examines current and past policies that influence teacher and leader development and supply in the state and makes recommendations for how to ensure that all children have access to well-prepared educators. In response to the "Leandro" tenets, this study focuses on: (1) well-placed teachers; and (2) well-prepared leaders. The research methods for this study included analyses of existing administrative data sets, collection of perceptual data from teachers and principals through interviews and focus groups, and administration of a survey to a sample of all North Carolina principals. [For the research brief, see ED617603.]
- Published
- 2019
17. Sound Basic Education for All: An Action Plan for North Carolina
- Author
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WestEd, Learning Policy Institute, and North Carolina State University, William & Ida Friday Institute for Educational Innovation
- Abstract
Throughout every region of North Carolina, leaders of organizations in all fields -- business, education, government, community, faith-based, and others -- agree that the future prosperity and well-being of the state's citizens requires successfully educating all of its children. That means effectively supporting children of every race and ethnicity, economic level, family background, and location, from the most rural to the most urban. However, North Carolina's current education system fails to meet the educational needs of many of its children and thereby fails to provide for the future success of these individuals, their communities, and the state. The Supreme Court of North Carolina's decision in "Leandro v. the State of North Carolina" (1997) ("Leandro") affirmed that the state has a constitutional responsibility to provide every student with an equal opportunity for a sound basic education and that the state was failing to meet that responsibility. As documented in this action plan, the challenges of meeting this responsibility have increased since the original decision, and the state needs to significantly increase its commitment and efforts to provide for the education of every student. This action plan provides recommendations for actions that will advance the state's efforts to achieve compliance with the "Leandro" decision. It identifies the highest leverage and most critical actions that the state needs to take immediately and over the next six years and beyond to transform the education system and provide the necessary foundational opportunities for all students.
- Published
- 2019
18. EMG Training for Altering Activation Patterns After Stroke
- Author
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North Carolina State University, Marquette University, Medical University of South Carolina, and Elliot Roth, Medical Director
- Published
- 2022
19. Fecal Microbiota Transplantation (FMT) in Clostridium Difficile Infection (CDI) Not Responding to Antibiotics (FMT)
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North Carolina Translational and Clinical Sciences Institute and North Carolina State University
- Published
- 2022
20. Tick-borne Illness and Clothing Study (TICS)
- Author
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North Carolina State University
- Published
- 2021
21. State Digital Learning Exemplars: Highlights from States Leading Change through Policies and Funding
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State Educational Technology Directors Association (SETDA), North Carolina State University, William & Ida Friday Institute for Educational Innovation, Acree, Lauren, and Fox, Christine
- Abstract
States are striving to support the expansion of technology tools and resources in K-12 education through state policies, programs, and funding in order to provide digital learning opportunities for all students. This paper highlights examples of states with policies in support of five key areas: (1) innovative funding streams and policy; (2) digital content; (3) human capacity; (4) network infrastructure; and (5) data management and privacy. While there has been progress toward digital learning nationwide, several states have emerged as leaders in embracing digital learning via state policies and practices in all five areas mentioned above: Alabama, Indiana, Kentucky, North Carolina, and Utah. This report also highlights other states with significant progress in at least one of the specific five areas. Some critical areas for consideration that emerged include: (1) state investment in funding and policy; (2) digital content; (3) development of human capacity; (4) systemic approach to networks and infrastructure; and (5) student data and privacy. Leadership at the state level is paramount. Without strong leaders crafting a vision, which includes all five focus areas described in this report, statewide progress toward digital learning is difficult. As policymakers consider investments in technological tools and resources, they should also consider their broader vision for digital learning for their students. Contains endnotes.
- Published
- 2015
22. PAUL ARMSTRONG HUMPHREY 1920–2010
- Author
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the North Carolina State University collection of Paul Humphrey memorabilia and written accounts, Watson, Jerry, Schiermeier, Frank, and Turner, Bruce
- Published
- 2010
23. Paleo-denudation rates suggest variations in runoff drove aggradation during last glacial cycle, Crete, Greece
- Author
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Ott, Richard F., Scherler, Dirk, Wegmann, Karl W., D'Arcy, Mitch K., Pope, Richard J., Ivy‐Ochs, Susan, Christl, Marcus, Vockenhuber, Christoph, Rittenour, Tammy M., 1 Earth Surface Geochemistry GFZ German Centre for Geoscience Research Potsdam Germany, 3 Department of Marine, Earth and Atmospheric Sciences & Center for Geospatial Analytics North Carolina State University Raleigh NC USA, 4 Department of Earth, Ocean and Atmospheric Sciences University of British Colombia Vancouver Canada, 5 School of Environmental Sciences, College of Built and Natural Environment University of Derby Derby UK, 6 Laboratory of Ion Beam Physics ETH Zürich Zürich Switzerland, and 7 Geosciences Department Utah State University Logan UT USA
- Subjects
post‐burial production ,fluvial aggradation ,Geography, Planning and Development ,paleo‐denudation rates ,cosmogenic nuclides ,incision ,alluvial fan ,paleo-denudation rates ,post-burial production ,sediment supply ,Earth and Planetary Sciences (miscellaneous) ,500 Naturwissenschaften und Mathematik::550 Geowissenschaften, Geologie::550 Geowissenschaften ,ddc:551.3 ,Earth-Surface Processes - Abstract
Fluvial aggradation and incision are often linked to Quaternary climate cycles, but it usually remains unclear whether variations in runoff or sediment supply or both drive channel response to climate variability. Here we quantify sediment supply with paleo-denudation rates and provide geochronological constraints on aggradation and incision from the Sfakia and Elafonisi alluvial-fan sequences in Crete, Greece. We report seven optically stimulated luminescence and ten radiocarbon ages, eight Be-10 and eight Cl-36 denudation rates from modern channel and terrace sediments. For five samples, Be-10 and Cl-36 were measured on the same sample by measuring Be-10 on chert and Cl-36 on calcite. Results indicate relatively steady denudation rates throughout the past 80 kyr, but the aggradation and incision history indicates a link with climate shifts. At the Elafonisi fan, we identify four periods of aggradation coinciding with Marine Isotope Stages (MIS) 2, 4, 5a/b, and likely 6, and three periods of incision coinciding with MIS 1, 3, and likely 5e. At the Sfakia fan, rapid aggradation occurred during MIS 2 and 4, followed by incision during MIS 1. Nearby climate and vegetation records show that MIS 2, 4, and 6 stadials were characterized by cold and dry climates with sparse vegetation, whereas forest cover and more humid conditions prevailed during MIS 1, 3, and 5. Our data thus suggest that past changes in climate had little effect on landscape-wide denudation rates but exerted a strong control on the aggradation-incision behaviour of alluvial channels on Crete. During glacial stages, we attribute aggradation to hillslope sediment release promoted by reduced vegetation cover and decreased runoff; conversely, incision occurred during relatively warm and wet stages due to increased runoff. In this landscape, past hydroclimate variations outcompeted changes in sediment supply as the primary driver of alluvial deposition and incision., Earth Surface Processes and Landforms, 48 (2), ISSN:0197-9337, ISSN:1096-9837
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- 2023
- Full Text
- View/download PDF
24. Nutritional strategies to promote the health of weaned piglets: an evaluation of dietary supplementation with functional amino acids
- Author
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Yang, Chengbo (Animal Science), O, Karmin (Animal Science), Narvaez, Claudia (Food and Human Nutritional Sciences), Kim, Sung Woo (North Carolina State University), Nyachoti, Martin, Koo, Bonjin, Yang, Chengbo (Animal Science), O, Karmin (Animal Science), Narvaez, Claudia (Food and Human Nutritional Sciences), Kim, Sung Woo (North Carolina State University), Nyachoti, Martin, and Koo, Bonjin
- Abstract
Functional AA (FAA), the need for which dramatically increases in response to immune response, are mobilized through the degradation of muscle protein. Dietary FAA supplementation has been hypothesized to enhance the immune system or fortify the health of weaned piglets, thereby improving protein accretion and growth performance. The objective of this study was to evaluate the efficacy of dietary FAA supplementation in weaned pigs in relation to different weaning stressors. In Experiments 1 and 2, dietary Thr supplementation was evaluated in relation with diet complexity. Dietary L-Thr supplementation enhanced the intestinal morphology (villus height and number of goblet cells) and microbial metabolites in the gut (short-chain fatty acid concentration), as well as body protein mass. The benefits of supplementation were greater with a simple diet than with a complex diet. However, the inflammation (the increase in interleukin-6 and interleukin-10) caused by feeding a simple diet could not be modulated with L-Thr supplementation. In Experiment 3, dietary sulfur amino acids supplementation was investigated in pigs under oxidative and inflammatory status that were induced by a lipopolysaccharide challenge. Dietary DL-Met supplementation at 0.1% failed to restore the intestinal morphology, permeability, and redox status impaired by a lipopolysaccharide (LPS) challenge, but it improved the hepatic glutathione levels and inflammatory responses. By contrast, dietary L-Cys supplementation at 0.1% improved intestinal morphology, permeability, and redox status of LPS-challenged pigs, restoring them to a level comparable to the sham-challenged control. Supplementation with combined DL-Met and L-Cys showed antagonistic effects on the inflammatory response, intestinal morphology, and redox status. Experiment 4 explored the effect of dietary Val supplementation on inflammatory status and intestinal microbial composition in weaned pigs raised in low or high sanitary condition. Diet
- Published
- 2022
25. Outcomes following SARS-CoV-2 infection in patients with chronic liver disease: An international registry study
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European Association for the Study of the Liver, National Institutes of Health (US), North Carolina State University, National Institute for Health Research (UK), National Health Service (UK), Marjot, Thomas, Moon, Andrew M., Cook, Jonathan A., Abd-Elsalam, Sherief, Aloman, Costica, Armstrong, Matthew J., Pose, Elisa, Brenner, Erica J., Cargill, Tamsin, Catana, Maria-Andreea, Dhanasekaran, Renumathy, Eshraghian, Ahad, García-Juárez, Ignacio, Gill, Upkar S., Jones, Patricia D., Kennedy, James, Marshall, Aileen, Matthews, Charmaine, Mells, George, Mercer, Carolyn, Perumalswami, Ponni V., Avitabile, Emma, Qi, Xialong, Su, Feng, Ufere, Nneka N., Wong, Yu Jun, Zheng, Ming-Hua, Barnes, Eleanor, Barritt, Alfred S., Webb, Gwilym J., European Association for the Study of the Liver, National Institutes of Health (US), North Carolina State University, National Institute for Health Research (UK), National Health Service (UK), Marjot, Thomas, Moon, Andrew M., Cook, Jonathan A., Abd-Elsalam, Sherief, Aloman, Costica, Armstrong, Matthew J., Pose, Elisa, Brenner, Erica J., Cargill, Tamsin, Catana, Maria-Andreea, Dhanasekaran, Renumathy, Eshraghian, Ahad, García-Juárez, Ignacio, Gill, Upkar S., Jones, Patricia D., Kennedy, James, Marshall, Aileen, Matthews, Charmaine, Mells, George, Mercer, Carolyn, Perumalswami, Ponni V., Avitabile, Emma, Qi, Xialong, Su, Feng, Ufere, Nneka N., Wong, Yu Jun, Zheng, Ming-Hua, Barnes, Eleanor, Barritt, Alfred S., and Webb, Gwilym J.
- Abstract
Background & Aims: Chronic liver disease (CLD) and cirrhosis are associated with immune dysregulation, leading to concerns that affected patients may be at risk of adverse outcomes following SARS-CoV-2 infection. We aimed to determine the impact of COVID-19 on patients with pre-existing liver disease, which currently remains ill-defined. Methods: Between 25th March and 8th July 2020, data on 745 patients with CLD and SARS-CoV-2 (including 386 with and 359 without cirrhosis) were collected by 2 international registries and compared to data on non-CLD patients with SARS-CoV-2 from a UK hospital network. Results: Mortality was 32% in patients with cirrhosis compared to 8% in those without (p <0.001). Mortality in patients with cirrhosis increased according to Child-Pugh class (A [19%], B [35%], C [51%]) and the main cause of death was from respiratory failure (71%). After adjusting for baseline characteristics, factors associated with death in the total CLD cohort were age (odds ratio [OR] 1.02; 1.01–1.04), Child-Pugh A (OR 1.90; 1.03–3.52), B (OR 4.14; 2.4–7.65), or C (OR 9.32; 4.80–18.08) cirrhosis and alcohol-related liver disease (OR 1.79; 1.03–3.13). Compared to patients without CLD (n = 620), propensity-score-matched analysis revealed significant increases in mortality in those with Child-Pugh B (+20.0% [8.8%–31.3%]) and C (+38.1% [27.1%–49.2%]) cirrhosis. Acute hepatic decompensation occurred in 46% of patients with cirrhosis, of whom 21% had no respiratory symptoms. Half of those with hepatic decompensation had acute-on-chronic liver failure. Conclusions: In the largest such cohort to date, we demonstrate that baseline liver disease stage and alcohol-related liver disease are independent risk factors for death from COVID-19. These data have important implications for the risk stratification of patients with CLD across the globe during the COVID-19 pandemic. Lay summary: This international registry study demonstrates that patients with cirrhosis are at increased
- Published
- 2021
26. Transmission of antimicrobial resistant non-O157 Escherichia coli at the interface of animal-fresh produce in sustainable farming environments
- Author
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Department of Agriculture (US), North Carolina State University, Glaize, Ayanna, Gutierrez-Rodriguez, Eduardo, Hanning, Irene, Díaz-Sánchez, Sandra, Gunter, Chris, Vliet, Arnoud H. M. van, Watson, Wes, Thakur, Siddhartha, Department of Agriculture (US), North Carolina State University, Glaize, Ayanna, Gutierrez-Rodriguez, Eduardo, Hanning, Irene, Díaz-Sánchez, Sandra, Gunter, Chris, Vliet, Arnoud H. M. van, Watson, Wes, and Thakur, Siddhartha
- Abstract
The interaction of typical host adapted enteric bacterial pathogens with fresh produce grown in fields is complex. These interactions can be more pronounced in co-managed or sustainable farms where animal operations are, by design, close to fresh produce, and growers frequently move between the two production environments. The primary objectives of this study were to 1) determine the transmission of STEC or enteric pathogens from small and large animal herds or operations to fresh produce on sustainable farms in TN and NC, 2) identify the possible sources that impact transmission of AMR E. coli, specifically STEC on these systems, and 3) WGS to characterize recovered E. coli from these sources. Samples were collected from raw and composted manure, environment, and produce sources. The serotype, virulence, and genotypic resistance profile were determined using the assembled genome sequences sequenced by Illumina technology. Broth microdilution was used to determine the antimicrobial susceptibility of each isolate against a panel of fourteen antimicrobials. The prevalence of E. coli increased during the summer season for all sources tested. ParSNP trees generated demonstrated that the transmission of AMR E. coli is occurring between animal feeding operations and fresh produce. Ten isolates were identified as serotype O45, a serotype that is associated with the “Big Six” group that is frequently linked with foodborne outbreaks caused by non-O157 E. coli. However, these isolates did not possess the stx gene. The highest frequency of resistance was detected against streptomycin (n = 225), ampicillin (n = 190) and sulfisoxazole FIS (n = 140). A total of 35 (13.7%) isolates from two TN farms were positive for the blaCMY (n = 5) and blaTEM (n = 32) genes. The results of this study show the potential of AMR E. coli transmission between animal feeding operations and fresh produce, and more studies are recommended to study this interaction and prevent dissemination in sustaina
- Published
- 2020
27. Orbital foregrounds for ultra-short duration transients
- Author
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National Science Foundation (US), North Carolina State University, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Corbett, Hank, Law, Nicholas M., Vasquez Soto, Alan, Howard, W. S., Glazier, Amy, González, Ramses, Ratzloff, J. K., Galliher, Nathan, Fors, Octavi, Quimby, Robert, National Science Foundation (US), North Carolina State University, Ministerio de Ciencia, Innovación y Universidades (España), Agencia Estatal de Investigación (España), Corbett, Hank, Law, Nicholas M., Vasquez Soto, Alan, Howard, W. S., Glazier, Amy, González, Ramses, Ratzloff, J. K., Galliher, Nathan, Fors, Octavi, and Quimby, Robert
- Abstract
Reflections from objects in Earth orbit can produce subsecond, star-like optical flashes similar to astrophysical transients. Reflections have historically caused false alarms for transient surveys, but the population has not been systematically studied. We report event rates for these orbital flashes using the Evryscope Fast Transient Engine, a low-latency transient detection pipeline for the Evryscopes. We select single-epoch detections likely caused by Earth satellites and model the event rate as a function of both magnitude and sky position. We measure a rate of ${1800}_{-280}^{+600}$ sky−1 hr−1, peaking at mg = 13.0, for flashes morphologically degenerate with real astrophysical signals in surveys like the Evryscopes. Of these, ${340}_{-85}^{+150}$ sky−1 hr−1 are bright enough to be visible to the naked eye in typical suburban skies with a visual limiting magnitude of V ≈ 4. These measurements place the event rate of orbital flashes orders of magnitude higher than the combined rate of public alerts from all active all-sky fast-timescale transient searches, including neutrino, gravitational-wave, gamma-ray, and radio observatories. Short-timescale orbital flashes form a dominating foreground for untriggered searches for fast transients in low-resolution, wide-angle surveys. However, events like fast radio bursts with arcminute-scale localization have a low probability (~10−5) of coincidence with an orbital flash, allowing optical surveys to place constraints on their potential optical counterparts in single images. Upcoming satellite internet constellations, like SpaceX Starlink, are unlikely to contribute significantly to the population of orbital flashes in normal operations.
- Published
- 2020
28. Four bottlenecks restrict colonization and invasion by the pathogen Ralstonia solanacearum in resistant tomato
- Author
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Ministerio de Economía y Competitividad (España), Department of Agriculture (US), Monsanto Company, North Carolina State University, Indian Council of Agricultural Research, Generalitat de Catalunya, Planas-Marquès, Marc, Kressin, Jonathan, Kashyap, Anurag, Panthee, Dilip R., Louws, Frank J., Coll, Núria S., Valls, Marc, Ministerio de Economía y Competitividad (España), Department of Agriculture (US), Monsanto Company, North Carolina State University, Indian Council of Agricultural Research, Generalitat de Catalunya, Planas-Marquès, Marc, Kressin, Jonathan, Kashyap, Anurag, Panthee, Dilip R., Louws, Frank J., Coll, Núria S., and Valls, Marc
- Abstract
Ralstonia solanacearum is a bacterial vascular pathogen causing devastating bacterial wilt. In the field, resistance against this pathogen is quantitative and is available for breeders only in tomato and eggplant. To understand the basis of resistance to R. solanacearum in tomato, we investigated the spatio-temporal dynamics of bacterial colonization using non-invasive live monitoring techniques coupled to grafting of susceptible and resistant varieties. We found four ‘bottlenecks’ that limit the bacterium in resistant tomato: root colonization, vertical movement from roots to shoots, circular vascular bundle invasion, and radial apoplastic spread in the cortex. Radial invasion of cortical extracellular spaces occurred mostly at late disease stages but was observed throughout plant infection. This study shows that resistance is expressed in both root and shoot tissues, and highlights the importance of structural constraints to bacterial spread as a resistance mechanism. It also shows that R. solanacearum is not only a vascular pathogen but spreads out of the xylem, occupying the plant apoplast niche. Our work will help elucidate the complex genetic determinants of resistance, setting the foundations to decipher the molecular mechanisms that limit pathogen colonization, which may provide new precision tools to fight bacterial wilt in the field.
- Published
- 2020
29. Propagation of Spartina alterniflora for substrate stabilization and salt marsh development / by W.W. Woodhouse, Jr., E.D. Seneca, and S.W. Broome.
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Woodhouse, W. W. (William Walton), 1910, Broome, S. W. 1945, Seneca, E. D., Coastal Engineering Research Center (U.S.), North Carolina State University, MBLWHOI Library, Woodhouse, W. W. (William Walton), 1910, Broome, S. W. 1945, Seneca, E. D., Coastal Engineering Research Center (U.S.), and North Carolina State University
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Dredging spoil ,Marsh plants ,Salt marshes - Published
- 1974
30. Die Naturgeschichte des Cajus Plinius Secundus : ins Deutsche übersetzt und mit Anmerkungen versehen / von G.C. Wittstein.
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Pliny, the Elder, Wittstein, Georg Christian, 1810-1887, Tippmann Collection (North Carolina State University)., NCSU Libraries (archive.org), Pliny, the Elder, Wittstein, Georg Christian, 1810-1887, and Tippmann Collection (North Carolina State University).
- Subjects
Natural history ,Pre-Linnean works - Published
- 1881
31. Propagation of Spartina alterniflora for substrate stabilization and salt marsh development
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Woodhouse, W. W. (William Walton), 1910, Broome, S. W. (Stephen White), 1945, Seneca, E. D., Coastal Engineering Research Center (U.S.), North Carolina State University, MBLWHOI Library, Woodhouse, W. W. (William Walton), 1910, Broome, S. W. (Stephen White), 1945, Seneca, E. D., Coastal Engineering Research Center (U.S.), and North Carolina State University
- Subjects
Dredging spoil ,Marsh plants ,Salt marshes
32. Rhynchota /
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Distant, William Lucas, 1845-1922, Metcalf Collection (North Carolina State University), NCSU Libraries (archive.org), Distant, William Lucas, 1845-1922, and Metcalf Collection (North Carolina State University)
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Hemiptera ,India ,Insects
33. Structural, functional, and genomic diversity of plant NLR proteins: An evolved resource for rational engineering of plant immunity
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Gordon and Betty Moore Foundation, North Carolina State University, Two Blades Foundation, University of Colorado, Monteiro, Freddy, Nishimura, Marc T., Gordon and Betty Moore Foundation, North Carolina State University, Two Blades Foundation, University of Colorado, Monteiro, Freddy, and Nishimura, Marc T.
- Abstract
Plants employ a diverse intracellular system of NLR (nucleotide binding–leucine-rich repeat) innate immune receptors to detect pathogens of all types. These receptors represent valuable agronomic traits that plant breeders rely on to maximize yield in the face of devastating pathogens. Despite their importance, the mechanistic underpinnings of NLR-based disease resistance remain obscure. The rapidly increasing numbers of plant genomes are revealing a diverse array of NLR-type immune receptors. In parallel, mechanistic studies are describing diverse functions for NLR immune receptors. In this review, we intend to broadly describe how the structural, functional, and genomic diversity of plant immune receptors can provide a valuable resource for rational engineering of plant immunity.
- Published
- 2018
34. A holistic approach to unravelling chondroitin sulfation: Correlations between surface charge, structure and binding to growth factors
- Author
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Consejo Superior de Investigaciones Científicas (España), North Carolina State University, Ministerio de Economía, Industria y Competitividad (España), Benito-Arenas, Raúl, Doncel-Pérez, Ernesto, Fernández-Gutiérrez, Mar, Garrido, Leoncio, García-Junceda, Eduardo, Revuelta, Julia, Bastida, Agatha, Fernández-Mayoralas, Alfonso, Consejo Superior de Investigaciones Científicas (España), North Carolina State University, Ministerio de Economía, Industria y Competitividad (España), Benito-Arenas, Raúl, Doncel-Pérez, Ernesto, Fernández-Gutiérrez, Mar, Garrido, Leoncio, García-Junceda, Eduardo, Revuelta, Julia, Bastida, Agatha, and Fernández-Mayoralas, Alfonso
- Abstract
Chondroitin sulfate (CS) is a relevant family of polysaccharides that participates in a large variety of biological events that are related to neural processes by regulating various growth factors through the pattern and degree of sulfation of the polysaccharide. However, their own complexity makes their optimization for biomedical applications a difficult undertaking. Thus, a different perspective has to be taken. Herein, we show that the particular sulfate distribution within the disaccharide repeating-unit plays a key role in the binding of growth factors (GFs). In particular, this disposition modulates the surface charge of the helical structure that, interestingly, has a significant influence on the binding capacity of CSs with several GFs. This fact should be carefully considered in the design of new ligands with improved activity as GFs ligands.
- Published
- 2018
35. Genetic Analysis of Bipartite Geminivirus Tissue Tropism
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Qin, Ying and Petty, Ian T.D.
- Published
- 2001
- Full Text
- View/download PDF
36. Who gets to speak and what must they say?: a commentary on the Briloff affair
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Williams, Paul F.
- Published
- 2001
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37. Characterization and exploitation of CRISPR loci in Bifidobacterium longum
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North Carolina State University, North Carolina Agricultural Foundation, Hidalgo-Cantabrana, Claudio [0000-0002-7248-4564], Sánchez, Borja [0000-0003-1408-8018], Sánchez García, Borja [0000-0003-1408-8018], Hidalgo-Cantabrana, Claudio, Crawley, A.B., Sánchez García, Borja, Barrangou, Rodolphe, North Carolina State University, North Carolina Agricultural Foundation, Hidalgo-Cantabrana, Claudio [0000-0002-7248-4564], Sánchez, Borja [0000-0003-1408-8018], Sánchez García, Borja [0000-0003-1408-8018], Hidalgo-Cantabrana, Claudio, Crawley, A.B., Sánchez García, Borja, and Barrangou, Rodolphe
- Abstract
Diverse CRISPR-Cas systems provide adaptive immunity in many bacteria and most archaea, via a DNA-encoded, RNA-mediated, nucleic-acid targeting mechanism. Over time, CRISPR loci expand via iterative uptake of invasive DNA sequences into the CRISPR array during the adaptation process. These genetic vaccination cards thus provide insights into the exposure of strains to phages and plasmids in space and time, revealing the historical predatory exposure of a strain. These genetic loci thus constitute a unique basis for genotyping of strains, with potential of resolution at the strain-level. Here, we investigate the occurrence and diversity of CRISPR-Cas systems in the genomes of various Bifidobacterium longum strains across three sub-species. Specifically, we analyzed the genomic content of 66 genomes belonging to B. longum subsp. longum, B. longum subsp. infantis and B. longum subsp. suis, and identified 25 strains that carry 29 total CRISPR-Cas systems. We identify various Type I and Type II CRISPR-Cas systems that are widespread in this species, notably I-C, I-E, and II-C. Noteworthy, Type I-C systems showed extended CRISPR arrays, with extensive spacer diversity. We show how these hypervariable loci can be used to gain insights into strain origin, evolution and phylogeny, and can provide discriminatory sequences to distinguish even clonal isolates. By investigating CRISPR spacer sequences, we reveal their origin and implicate phages and prophages as drivers of CRISPR immunity expansion in this species, with redundant targeting of select prophages. Analysis of CRISPR spacer origin also revealed novel PAM sequences. Our results suggest that CRISPR-Cas immune systems are instrumental in mounting diversified viral resistance in B. longum, and show that these sequences are useful for typing across three subspecies
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- 2017
38. Grinding Temperature Measurements in Magnesia-Partially-Stabilized Zirconia Using Infrared Spectrometry
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Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan 48109, Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, North Carolina 27695, Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, High Temperature Materials Laboratory, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, Curry, Adam C., Shih, Albert J., Kong, Jin, Scattergood, Ronald O., McSpadden, Sam B., Department of Mechanical Engineering, University of Michigan, Ann Arbor, Michigan 48109, Department of Mechanical and Aerospace Engineering, North Carolina State University, Raleigh, North Carolina 27695, Department of Materials Science and Engineering, North Carolina State University, Raleigh, North Carolina 27695, High Temperature Materials Laboratory, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, Curry, Adam C., Shih, Albert J., Kong, Jin, Scattergood, Ronald O., and McSpadden, Sam B.
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- 2010
39. Contribution of surface bound positive charge towards the conversion of N-H to N-Cl on poly (ethylene terephthalate) and the antibacterial activity of the resulting N-Cl
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Cenkowski,Stefan (Biosystems Engineering) King, Martin (College of Textiles, North Carolina State University, USA), Liu, Song (Biosystems Engineering), Kaur, Rajbir, Cenkowski,Stefan (Biosystems Engineering) King, Martin (College of Textiles, North Carolina State University, USA), Liu, Song (Biosystems Engineering), and Kaur, Rajbir
- Abstract
As a continued study on combined use of different antibacterial chemistries, N-chloramine and short chain Quaternary ammonium compound (QAC) were immobilized on modified poly (ethylene terephthalate) (PET) surface in various ratios via “click” chemistry. In this study, contribution of surface bound QAC to the conversion of cyclic and acyclic N-H to N-Cl, fastest recharging chlorination as well as the most effective antibacterial efficacy was investigated. Surface bound positive charge at the density of 8.4x1016charges/cm2 achieved highest equilibrium conversion and facilitated a nine-fold increase in conversion of sterically hindered acyclic N-H to N-Cl from 0.39 to 3.92%. Within the range of 2.8x1016 to 8.4x1016charges/cm2, highest active chlorine loading within first five minutes of chlorination was observed on sample loaded with 4.6x1016charges/cm2.As it comes to PET surface grafted with a cyclic N-chloramine precursor, the presence of 2x1016charges/cm2 enabled a five-fold increase in the conversion of cyclic N-H to N-Cl. The highest biocidal efficacy was observed for sample loaded with cyclic N-chloramine/QAC 17.2:10 which presented total kill of E.coli (5.8 log reduction) in 10 minutes compared to 1.9 log reduction for other ratios (22.8/10, 75.5/10) tested at a similar level of active chlorine(223±6ppm respectively).
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- 2016
40. Fast synthesis and bioconjugation of 68Ga core-doped extremely small iron oxide nanoparticles for PET/MR imaging
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Fundación Pro CNIC, North Carolina State University, Fundació La Marató de TV3, Ministerio de Economía y Competitividad (España), European Commission, Comunidad de Madrid, Pellico, Juan, Ruiz-Cabello, Jesús, Saiz-Alía, Marina, Rosario, Gilberto del, Caja, Sergio, Montoya, María, Fernández de Manuel, Laura, Morales, M. P., Gutiérrez, Lucía, Galiana, Beatriz, Enríquez, José Antonio, Herranz, Fernando, Fundación Pro CNIC, North Carolina State University, Fundació La Marató de TV3, Ministerio de Economía y Competitividad (España), European Commission, Comunidad de Madrid, Pellico, Juan, Ruiz-Cabello, Jesús, Saiz-Alía, Marina, Rosario, Gilberto del, Caja, Sergio, Montoya, María, Fernández de Manuel, Laura, Morales, M. P., Gutiérrez, Lucía, Galiana, Beatriz, Enríquez, José Antonio, and Herranz, Fernando
- Abstract
Combination of complementary imaging techniques, like hybrid PET/MRI, allows protocols to be developed that exploit the best features of both. In order to get the best of these combinations the use of dual probes is highly desirable. On this sense the combination of biocompatible iron oxide nanoparticles and 68Ga isotope is a powerful development for the new generation of hybrid systems and multimodality approaches. Our objective was the synthesis and application of a chelator-free 68Ga-iron oxide nanotracer with improved stability, radiolabeling yield and in vivo performance in dual PET/MRI. We carried out the core doping of iron oxide nanoparticles, without the use of any chelator, by a microwave-driven protocol. The synthesis allowed the production of extremely small (2.5 nm) 68Ga core-doped iron oxide nanoparticles. The microwave approach allowed an extremely fast synthesis with a 90% radiolabeling yield and T1 contrast in MRI. With the same microwave approach the nano-radiotracer was functionalized in a fast and efficient way. We finally evaluated these dual targeting nanoparticles in an angiogenesis murine model by PET/MR imaging.
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- 2016
41. Palatability and chemical defences of benthic cyanobacteria to a suite of herbivores
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Smithsonian Institution, Department of Commerce (US), North Carolina State University, Capper, Angela, Erickson, Amy A., Ritson-Williams, Raphael, Becerro, Mikel, Arthur, Karen A., Paul, Valerie J., Smithsonian Institution, Department of Commerce (US), North Carolina State University, Capper, Angela, Erickson, Amy A., Ritson-Williams, Raphael, Becerro, Mikel, Arthur, Karen A., and Paul, Valerie J.
- Abstract
Nuisance blooms of toxic cyanobacteria are a common occurrence in many tropical and subtropical locations. Benthic marine cyanobacteria of the genera Lyngbya, Okeania, and Moorea are frequently observed in both Florida and throughout the Caribbean, sometimes forming large mats, and are prolific producers of bioactive secondary metabolites that often act as feeding deterrents to generalist herbivores. Little is known regarding the ecological roles of the secondary metabolite chemistry and the palatability of benthic cyanobacteria to grazers. This study examines the palatability of benthic cyanobacterial species from Florida (IRL1, IRL2, IRL3 and Okeania erythroflocculosa) and Belize (BEL1, BEL2) to a range of macro- and mesograzers in Florida and Belize. Pair-wise feeding assays using artificial diets of Gracilaria tikvahiae or fish food coated with cyanobacterial extracts and a control were used to determine palatability of extracts to Floridian and Belizean generalist grazers. The extracts of IRL1, IRL2, IRL3 and O. erythroflocculosa from Florida did not deter feeding by invertebrate grazers. Reef fish, however, were deterred by the non-polar extracts of IRL1, IRL3 and O. erythroflocculosa. Stylocheilus striatus was stimulated to feed on IRL2 extracts and non-polar extracts from IRL3. Non-polar extracts of BEL1 stimulated feeding in S. striatus; however, no significant difference was observed between BEL2 extracts and the control. Most generalist invertebrate grazers, sympatric and non-sympatric, appear indifferent to cyanobacteria extracts whilst reef fish are more likely to be deterred by cyanobacterial extracts, which may affect species interaction within communities with fluctuating or dominating benthic cyanobacterial blooms.
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- 2016
42. Haplotype dimorphism in a SNP collection from Drosophila melanogaster K. Teeter and M. Naeemuddin contributed equally to this work.
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Department of Biology, University of Michigan, Ann Arbor, Michigan 48109, Department of Biology, University of Michigan, Ann Arbor, Michigan 48109 ; Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695 ; Department of Genetics, Gardner Hall, North Carolina State University, Raleigh, NC 27695-7614, Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695, Department of Biochemistry, Stanford DNA Sequencing and Technology Center, Palo Alto, California 94306, Teeter, Katherine, Naeemuddin, Mohammed, Gasperini, Robert, Zimmerman, Erika, White, Kevin P., Hoskins, Roger, Gibson, Greg, Department of Biology, University of Michigan, Ann Arbor, Michigan 48109, Department of Biology, University of Michigan, Ann Arbor, Michigan 48109 ; Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695 ; Department of Genetics, Gardner Hall, North Carolina State University, Raleigh, NC 27695-7614, Berkeley Drosophila Genome Project, Lawrence Berkeley National Laboratory, Berkeley, California 94720, Department of Genetics, North Carolina State University, Raleigh, North Carolina 27695, Department of Biochemistry, Stanford DNA Sequencing and Technology Center, Palo Alto, California 94306, Teeter, Katherine, Naeemuddin, Mohammed, Gasperini, Robert, Zimmerman, Erika, White, Kevin P., Hoskins, Roger, and Gibson, Greg
- Abstract
A moderate resolution single nucleotide polymorphism (SNP) map of the genome of Drosophila melanogaster that is designed for use in quantitative genetic mapping is described. Seventeen approximately 500 nucleotide gene sequences spaced at 10 to 20 centimorgan intervals were combined with 49 shorter sequence tag sites (STSs) at 5 to 10 centimorgan intervals to generate a map that should not leave any gaps greater than one half of a chromosome arm when any two wild type lines are compared. Of 20 markers with sufficient polymorphism to construct haplotype cladograms, 13 showed evidence for two divergent classes of haplotype. The possible mechanisms for and implications of the unexpected finding that two thirds of all short gene sequences in D. melanogaster may be dimorphic are discussed, including the suggestion that admixture between two separate lineages may have been a major event in the history of the species. J. Exp. Zool. (Mol. Dev. Evol.) 288:63???75, 2000.?? 2000 Wiley-Liss, Inc.
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- 2006
43. Crossover from single-file to fickian diffusion in carbon nanotubes and nanotube bundles: pure components and mixtures
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North Carolina State University, Zhejiang University, Universität Leipzig, Liu, Ying-Chun, Moore, Joshua D., Chen, Qu, Roussel, Thomas J., Wang, Qi, Gubbins, Keith E., North Carolina State University, Zhejiang University, Universität Leipzig, Liu, Ying-Chun, Moore, Joshua D., Chen, Qu, Roussel, Thomas J., Wang, Qi, and Gubbins, Keith E.
- Abstract
The diffusion mechanism of pure component Ar and binary mixtures of Ar/Kr and Ar/Ne confined in single-walled carbon nanotubes (SWNTs) and bundles was investigated by a combined Grand Canonical Monte Carlo and molecular dynamics study. For Ar confined in SWNTs, a crossover from single-file to Fickian diffusion existed when the density of Ar was a minimum as a function of the SWNT diameter. Argon diffused by a single-file mechanism in SWNTs smaller than an accessible diameter of 1.76σAr, corresponding to (7,7), (12,0) and (8,6) SWNTs but by a Fickian mechanism for SWNTs larger in diameter. Both components in Ar/Kr mixtures had a single-file diffusional mechanism in (6,6) and (7,7) SWNTs and a Fickain mechanism for SWNTs larger in diameter. Likewise, both components in a Ar/Ne mixtures had a single-file diffusional mechanism in a (6,6) CNT, and Ar had a single-file diffusional mechanism in a (7,7) SWCNT. However, Ne in the Ar/Ne mixture exhibited Fickian diffusion in the (7,7) SWNT , which indicated bi-modal diffusion. Larger diameters of SWNTs provided Fickian diffusion for both components in an Ar/Ne mixture. Argon diffused in a (25,0) SWNT bundle (with a bimodal pore size distribution) in a bimodal mechanism, with Ar diffusing in single-file in interstitial sites and in a Fickian mechanism in inner nanotube channels. In all cases of single-file diffusion the mean-squared displacement (MSD) of the fluid molecules had a square root of time dependence, while molecules diffusing by a Fickian mechanism had a MSD with a linear time dependence.
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- 2015
44. The role of hydrogen bond in mechanism of water diffusion in carbon nanotubes
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Zhejiang University, Universität Leipzig, North Carolina State University, Chen, Qu, Liu, Yingchun, Wang, Qi, Gubbins, Keith E., Zhejiang University, Universität Leipzig, North Carolina State University, Chen, Qu, Liu, Yingchun, Wang, Qi, and Gubbins, Keith E.
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- 2015
45. Bimodal diffusion of binary Lennard Jones mixtures in atomically detailed single-walled carbon nanotubes
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Zhejiang University, North Carolina State University, Universität Leipzig, Chen, Qu, Moore, Joshua D., Liu, Ying-Chun, Roussel, Thomas R., Wang, Qi, Gubbins, Keith E., Zhejiang University, North Carolina State University, Universität Leipzig, Chen, Qu, Moore, Joshua D., Liu, Ying-Chun, Roussel, Thomas R., Wang, Qi, and Gubbins, Keith E.
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- 2015
46. Slow and fast (fickian) diffusion modes for argon confined in BPL activated carbon: Slow and fast (fickian) diffusion modes for argon confined in BPL activatedcarbon
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North Carolina State University, Zhejiang University, Universität Leipzig, Moore, Joshua D., Palmer, Jeremy C., Liu, Ying-Chun, Roussel, Thomas J., Brennan, John K., Gubbins, Keith E., North Carolina State University, Zhejiang University, Universität Leipzig, Moore, Joshua D., Palmer, Jeremy C., Liu, Ying-Chun, Roussel, Thomas J., Brennan, John K., and Gubbins, Keith E.
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- 2015
47. Dual-mode diffusion of argon confined in carbon nanotube bundles
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North Carolina State University, Zhejiang University, Universität Leipzig, Liu, Ying-Chun, Roussel, Thomas J., Moore, Joshua D., Wang, Qi, Gubbins, Keith E., North Carolina State University, Zhejiang University, Universität Leipzig, Liu, Ying-Chun, Roussel, Thomas J., Moore, Joshua D., Wang, Qi, and Gubbins, Keith E.
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- 2015
48. Modeling a water target with proton range and target density coupling
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North Carolina State University, USA, Faugl, T., Stokely, M., Wieland, B., Bolotnov, I., Doster, J., Peeples, J., Poorman, M., North Carolina State University, USA, Faugl, T., Stokely, M., Wieland, B., Bolotnov, I., Doster, J., Peeples, J., and Poorman, M.
- Abstract
Introduction Combined thermal and fluid modeling is useful for design and optimization of cyclotron water targets. Previous heat transfer models assumed either a distribution of void under saturation conditions [1] or a static volumetric heat distribution [2]. This work explores the coupling of Monte Carlo radiation transport and Computation Fluid Dynamics (CFD) software in a computational model of the BTI Targetry visualization target [3]. In a batch water target, as the target medium is heated by energy deposition from the proton beam, a non-uniform density distribution develops. Production target operation is ultimately limited by the range thickness of the target un-der conditions of reduced water density. Since proton range is a function of target density, the system model must include the corresponding change in the volumetric heat distribution. As an initial attempt to couple the radiation transport and fluid dynamics calculations, the scope of this work was limited to subcooled target conditions. With the increasing availability of multi-phase CFD capabilities, this work provides the basis for extending these calculations to boiling targets where the coupling of the radiation transport and fluid dynamics is expected to be much stronger. Material and Methods The Monte Carlo radiation transport code MCNPX was used to create energy deposition data tallies from proton interaction with the target water and beam window. The beam was modeled as a Gaussian distribution with 50% transmission through a 10 mm diameter collimator. The energy deposition tally was translated into a 3-dimensional, point-wise heat generation table and supplied as an input to the CFD code ANSYS CFX. An iterative method was developed to couple the volumetric heat distribution from MCNPX to the fluid density distribution computed within ANSYS CFX. A 3-dimensional table of water density was exported from ANSYS CFX and imported into MCNPX. MCNPX was then used to calculate the heat generation rat
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- 2015
49. Occurrence and diversity of CRISPR-Cas systems in the genus bifidobacterium
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North Carolina State University, Science Foundation Ireland, Briner, Alexandra E., Gueimonde Fernández, Miguel, Margolles Barros, Abelardo, Barrangou, Rodolphe, North Carolina State University, Science Foundation Ireland, Briner, Alexandra E., Gueimonde Fernández, Miguel, Margolles Barros, Abelardo, and Barrangou, Rodolphe
- Abstract
CRISPR-Cas systems constitute adaptive immune systems for antiviral defense in bacteria. We investigated the occurrence and diversity of CRISPR-Cas systems in 48 Bifidobacterium genomes to gain insights into the diversity and co-evolution of CRISPR-Cas systems within the genus and investigate CRISPR spacer content. We identified the elements necessary for the successful targeting and inference of foreign DNA in select Type II CRISPRCas systems, including the tracrRNA and target PAM sequence. Bifidobacterium species have a very high frequency of CRISPR-Cas occurrence (77%, 37 of 48). We found that many Bifidobacterium species have unusually large and diverse CRISPR-Cas systems that contain spacer sequences showing homology to foreign genetic elements like prophages. A large number of CRISPR spacers in bifidobacteria show perfect homology to prophage sequences harbored in the chromosomes of other species of Bifidobacterium, including some spacers that self-target the chromosome. A correlation was observed between strains that lacked CRISPR-Cas systems and the number of times prophages in that chromosome were targeted by other CRISPR spacers. The presence of prophage-targeting CRISPR spacers and prophage content may shed light on evolutionary processes and strain divergence. Finally, elements of Type II CRISPR-Cas systems, including the tracrRNA and crRNAs, set the stage for the development of genome editing and genetic engineering tools. © 2015 Briner et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
- Published
- 2015
50. Estrogen-induced yolk precursors in European sea bass, Dicentrarchus labrax: Status and perspectives on multiplicity and functioning of vitellogenins
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Akdeniz University, North Carolina State University, North Carolina Agricultural Foundation, Yilmaz, Ozlem, Prat, Francisco, Ibáñez, Antonio José, Amano, Haruna, Koksoy, S., Sullivan, Craig V., Akdeniz University, North Carolina State University, North Carolina Agricultural Foundation, Yilmaz, Ozlem, Prat, Francisco, Ibáñez, Antonio José, Amano, Haruna, Koksoy, S., and Sullivan, Craig V.
- Abstract
The estrogen-inducible egg yolk precursor, vitellogenin, of the European sea bass (Dicentrarchus labrax) has received considerable scientific attention by virtue of its central importance in determination of oocyte growth and egg quality in this important aquaculture species. However, the multiplicity of vitellogenins in the sea bass has only recently been examined. Recent cloning and homology analyses have revealed that the sea bass possesses the three forms of vitellogenin, VtgAa, VtgAb and VtgC, reported to occur in some other highly evolved teleosts. Progress has been made in assessing the relative abundance and special structural features of the three Vtgs and their likely roles in oocyte maturation and embryonic nutrition. This report discusses these findings in the context of our prior knowledge of vitellogenesis in this species and of the latest advances in our understanding of the evolution and function of multiple Vtgs in acanthomorph fishes
- Published
- 2015
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