17,775 results on '"NEMATODES"'
Search Results
2. Repurposing methuosis-inducing anticancer drugs for anthelmintic therapy.
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Rajasekharan, Satish Kumar, Ravichandran, Vinothkannan, Boya, Bharath Reddy, Jayachandran, Anirudh, and Lee, Jintae
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ANTINEOPLASTIC agents , *DRUG therapy , *SMALL molecules , *NEMATODES , *TOMBS , *ANTHELMINTICS - Abstract
Drug-resistant parasitic nematodes pose a grave threat to plants, animals, and humans. An innovative paradigm for treating parasitic nematodes is emphasized in this opinion. This approach relies on repurposing methuosis (a death characterized by accumulation of large vacuoles) inducing anticancer drugs as anthelmintics. We review drugs/chemicals that have shown to kill nematodes or cancerous cells by inducing multiple vacuoles that eventually coalesce and rupture. This perspective additionally offers a succinct summary on Structure–Activity Relationship (SAR) of methuosis-inducing small molecules. This strategy holds promise for the development of broad-spectrum anthelmintics, shedding light on shared molecular mechanisms between cancer and nematodes in response to these inducers, thereby potentially transforming both therapeutic domains. [ABSTRACT FROM AUTHOR]
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- 2024
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3. Morphologic and Molecular Identification of Human Ocular Infection Caused by Pelecitus Nematodes, Thailand.
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Rujkorakarn, Ploysai, Suvannachart, Pukkapol, Patamatamkul, Samadhi, Thanchomnang, Tongjit, Pramual, Pairot, Saijuntha, Weerachai, Wanchai Maleewong, and Shigehiko Uni
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NEMATODE infections , *NEMATODES , *MEDICAL personnel , *INFECTION , *VULVA , *RECOMBINANT DNA , *FISH parasites , *HELMINTHS - Abstract
Nematodes of the Onchocercidae family, such as Pelecitus spp., are filarial parasites of medical and veterinary importance. Although infections are widely distributed among avian species, only 2 cases of human Pelecitus ocular infection, both in South America, have been reported. We describe a 61-year-old man in northeast Thailand diagnosed with an ocular infection. Morphologic characteristics suggested the causative agent was a female Pelecitus nematode: coiled body, rounded anterior and posterior extremities, a distinct preesophageal cuticular ring, lateral alae, a postdeirid, and a protuberant vulva. Sequences of the 12S rDNA gene indicated 95%–96% identity and cox1 gene 92%–96% identity with published P. copsychi sequences. P-distance for cox1 sequences between the causative agent and P. copsychi was 6.71%. Phylogenetic trees of 12S rDNA and cox1 genes indicated the species differed from but is closely associated with P. copsychi. Healthcare providers should be aware of the threat of ocular infection from Pelecitus spp. nematodes. [ABSTRACT FROM AUTHOR]
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- 2024
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4. Differential induction of defense genes in hexaploid wheat roots by the plant-parasitic nematodes Pratylenchus neglectus and P. thornei.
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Okubara, Patricia A., Sharpe, Richard M., Peetz, Amy B., Li, Xianran, and Zasada, Inga A.
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GENE expression , *POLYMERASE chain reaction , *PRATYLENCHUS , *SPECIES , *NEMATODES - Abstract
Pratylenchus neglectus and P. thornei are among the most destructive root lesion nematodes of wheat in the Pacific Northwest, United States of America and throughout the world. The aim of this study was to determine whether both nematode species were similar in their ability to induce defense genes in roots of wheat genotype Scarlet, and whether a combination of both species induced a different pattern of gene induction than each species alone. The long-term aspect of the research was to identify nematode-inducible promoters for deploying defense genes in roots in breeding programs. The root transcriptomes of genotype Scarlet were obtained after a one-week infection period with each nematode species separately, or both species combined. Root defense gene expression was induced for all three treatments relative to the no-nematode control, but P. thornei affected expression to a greater extent compared to P. neglectus. The species combination induced the highest number of defense genes. This result was not predicted from nematode enumeration studies, in which P. thornei colonization was substantially lower than that of P. neglectus, and the nematode combination did not show a significant difference. Quantitative real time polymerase chain reaction (qRT-PCR) assays for Dehydrin2, Glucan endo-1,3-beta-glucosidase, 1-cys-Peroxiredoxin, Pathogenesis-related protein 1 and Late embryogenesis-abundant proteins 76 and group 3 authenticated the induction observed in the transcriptome data. In addition, a near-isogenic line of Scarlet harboring genetic resistance to fungal soilborne pathogens, called Scarlet-Rz1, showed similar or higher levels of defense gene expression compared to fungus-susceptible Scarlet in qRT-PCR assays. Finally, transcriptome expression patterns revealed nematode-inducible promoters that are responsive to both P. neglectus and P. thornei. [ABSTRACT FROM AUTHOR]
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- 2024
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5. Network pharmacology-based mechanism analysis of dauricine on the alleviating Aβ-induced neurotoxicity in Caenorhabditis elegans.
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Zhang, Ranran, Huang, Xiaoyan, Zhou, Chunling, Zhang, Qian, Jia, Dongsheng, Xie, Xiaoliang, and Zhang, Ju
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SYNDROMES ,COMPUTER-assisted molecular modeling ,PROTEINS ,ALZHEIMER'S disease ,ALKALOIDS ,NEUROTOXICOLOGY ,AUTOPHAGY ,RESEARCH funding ,PHARMACEUTICAL chemistry ,NEMATODES ,IN vivo studies ,DESCRIPTIVE statistics ,CELLULAR signal transduction ,PLANT extracts ,GENE expression ,EXPERIMENTAL design ,PHENOLS ,ANIMAL experimentation ,METABOLISM ,ISOQUINOLINE ,AMYLOID beta-protein precursor - Abstract
Background: Dauricine (DAU), a benzyl tetrahydroisoquinoline alkaloid isolated from the root of Menispermum dauricum DC, exhibits promising anti-Alzheimer's disease (AD) effects, but its underlying mechanisms remain inadequately investigated. This paper aims to identify potential targets and molecular mechanisms of DAU in AD treatment. Methods: Network pharmacology and molecular docking simulation method were used to screen and focus core targets. Various transgenic Caenorhabditis elegans models were chosen to validate the anti-AD efficacy and mechanism of DAU. Results: There are 66 potential DAU-AD target intersections identified from 100 DAU and 3036 AD-related targets. Subsequent protein-protein interaction (PPI) network analysis identified 16 core targets of DAU for anti-AD. PIK3CA, AKT1 and mTOR were predicted to be the central targets with the best connectivity through the analysis of "compound-target-biological process-pathway network". Molecular docking revealed strong binding affinities between DAU and PIK3CA, AKT1, and mTOR. In vivo experiments demonstrated that DAU effectively reduced paralysis in AD nematodes caused by Aβ aggregation toxicity, downregulated expression of PIK3CA, AKT1, and mTOR homologues (age-1, akt-1, let-363), and upregulated expression of autophagy genes and the marker protein LGG-1. Simultaneously, DAU increased lysosomal content and enhanced degradation of the autophagy-related substrate protein P62. Thioflavin T(Th-T)staining experiment revealed that DAU decreased Aβ accumulation in AD nematodes. Further experiments also confirmed DAU's protein scavenging activity in polyglutamine (polyQ) aggregation nematodes. Conclusion: Collectively, the mechanism of DAU against AD may be related to the activation of the autophagy-lysosomal protein clearance pathway, which contributes to the decrease of Aβ aggregation and the restoration of protein homeostasis. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Caracterización de la comunidad de nematodos de suelo en cuatro sistemas productivos del sudeste bonaerense, Argentina.
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THOUGNON ISLAS, ANDREA J., CHAVES, ELISEO, CARMONA, DORA, SAN MARTINO, SILVINA, and MONDINO, EDUARDO A.
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SOIL nematodes , *AGRICULTURE , *AGRICULTURAL productivity , *SOIL ecology , *LIVESTOCK productivity , *ANTHROPOGENIC soils - Abstract
This work evaluates the community of soil nematodes in agricultural and livestock environments with different intensity of land use in the southeast of the province of Buenos Aires. Nematodes were extracted from sites with different intensity of land use: corn (2 consecutive years of conventional tillage [LC]), potato (1 year of LC), soybean (direct seeding), and pastures (with grazing animals). 44 genera of nematodes belonging to 5 trophic groups were identified. The most abundant genera were Helicotylenchus, Pratylenchus and Cruznema. Significant differences were found in the structure of the nematode community between land uses. The total abundance and by trophic groups was higher in soybeans and pasture. Furthermore, in relation to the composition of the community of free-living nematodes (bacteriophages, frugivores, omnivores and predators), the sites with corn and soybeans presented a higher proportion of fungivores, while the sites with potatoes and grass showed a higher proportion of bacteriophages. In relation to phytophagous nematodes, the community associated with sites with greater agricultural disturbance (corn and potatoes) presented a different and less diverse assembly than those associated with sites with less disturbance (soybean and pasture). The nematological indices showed that the successional dynamics of the nematode communities were affected due to land use practices. This was confirmed through the analysis of the faunal profile, the majority of food chains, regardless of the type of land use, were affected by agronomic practices showing mature food webs. This work constitutes the first report on the composition of soil nematode communities in agricultural and livestock production fields in southeastern Buenos Aires, and contributes to understanding the ecology of soil nematode communities impacted by different anthropogenic practices. [ABSTRACT FROM AUTHOR]
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- 2024
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7. Extracellular vesicles.
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Wang, Juan, Barr, Maureen M, and Wehman, Ann M
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EXTRACELLULAR vesicles , *HEALTH status indicators , *PHENOMENOLOGICAL biology , *NEMATODES , *APOPTOSIS , *CELL physiology , *ELECTRON microscopy , *CELLULAR signal transduction , *METABOLITES , *ORGANELLES , *GENETIC testing - Abstract
Extracellular vesicles (EVs) encompass a diverse array of membrane-bound organelles released outside cells in response to developmental and physiological cell needs. EVs play important roles in remodeling the shape and content of differentiating cells and can rescue damaged cells from toxic or dysfunctional content. EVs can send signals and transfer metabolites between tissues and organisms to regulate development, respond to stress or tissue damage, or alter mating behaviors. While many EV functions have been uncovered by characterizing ex vivo EVs isolated from body fluids and cultured cells, research using the nematode Caenorhabditis elegans has provided insights into the in vivo functions, biogenesis, and uptake pathways. The C. elegans EV field has also developed methods to analyze endogenous EVs within the organismal context of development and adult physiology in free-living, behaving animals. In this review, we summarize major themes that have emerged for C. elegans EVs and their relevance to human health and disease. We also highlight the diversity of biogenesis mechanisms, locations, and functions of worm EVs and discuss open questions and unexplored topics tenable in C. elegans , given the nematode model is ideal for light and electron microscopy, genetic screens, genome engineering, and high-throughput omics. [ABSTRACT FROM AUTHOR]
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- 2024
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8. The Caenorhabditis elegans cuticle and precuticle: a model for studying dynamic apical extracellular matrices in vivo.
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Sundaram, Meera V and Pujol, Nathalie
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NANOSTRUCTURES , *EPITHELIAL cells , *NEMATODES , *CELL physiology , *EPIDERMIS , *ANIMAL behavior , *CAENORHABDITIS elegans , *EXTRACELLULAR matrix , *COLLAGEN , *NATURAL immunity , *PHYSIOLOGICAL stress , *MOLECULAR biology , *HELMINTHS , *ZONA pellucida - Abstract
Apical extracellular matrices (aECMs) coat the exposed surfaces of animal bodies to shape tissues, influence social interactions, and protect against pathogens and other environmental challenges. In the nematode Caenorhabditis elegans , collagenous cuticle and zona pellucida protein-rich precuticle aECMs alternately coat external epithelia across the molt cycle and play many important roles in the worm's development, behavior, and physiology. Both these types of aECMs contain many matrix proteins related to those in vertebrates, as well as some that are nematode-specific. Extensive differences observed among tissues and life stages demonstrate that aECMs are a major feature of epithelial cell identity. In addition to forming discrete layers, some cuticle components assemble into complex substructures such as ridges, furrows, and nanoscale pillars. The epidermis and cuticle are mechanically linked, allowing the epidermis to sense cuticle damage and induce protective innate immune and stress responses. The C. elegans model, with its optical transparency, facilitates the study of aECM cell biology and structure/function relationships and all the myriad ways by which aECM can influence an organism. [ABSTRACT FROM AUTHOR]
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- 2024
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9. Effects of military training, warfare and civilian ammunition debris on the soil organisms: an ecotoxicological review.
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Rodríguez-Seijo, Andrés, Fernández-Calviño, David, Arias-Estévez, Manuel, and Arenas-Lago, Daniel
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SOIL biology , *MILITARY education , *AMMUNITION , *MILITARY explosives , *SOIL pollution , *EXPLOSIVE volcanic eruptions - Abstract
Civilian and military activities are sources of water and soil contamination by inorganic and organic contaminants caused by shooting practices, warfare, and/or mechanized military training. Lead poisoning and contaminant bioaccumulation due to spent shots or other related military contaminants have been widely studied for mammals, birds, and plants. Although there are different papers on the impact on earthworms, information on micro and mesofauna (i.e., collembola, nematodes, etc.) is still scarce. Here, we review the published data regarding the impact of civilian and military shooting activities, including war-impacted areas, focusing on soil organisms, from microbial communities to the ecotoxicological effects on terrestrial organisms. One hundred eleven studies were considered where earthworms and enchytraeids were widely studied, especially under ecotoxicological assays with Pb and energetic-related compounds from military explosives. There is a lack of information on soil organism groups, such as mites, ants, or gastropods, which play important roles in soil function. Data from combined exposures (e.g., PTEs + TNT and PTEs + PAHs) is scarce since several studies focused on a single contaminant, usually Pb, when combined contaminants would be more realistic. Ecotoxicological assays should also cover other understudied ammunition elements, such as Bi, Cu, or W. [ABSTRACT FROM AUTHOR]
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- 2024
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10. The influence of habitat heterogeneity on Nematoda communities in Posidonia oceanica meadows.
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García-Cobo, Marta, González-Casarrubios, Alberto, García-Gómez, Guillermo, Pardos, Fernando, and Sánchez, Nuria
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POSIDONIA , *POSIDONIA oceanica , *NEMATODES , *MEADOWS , *HABITATS , *HETEROGENEITY , *GRASSLANDS - Abstract
Nematodes typically comprise the most abundant phylum in meiofaunal communities. We aim to characterize the specific ecological conditions that influence Nematoda communities in Posidonia oceanica grasslands focusing on three habitats: leaves, matte, and unvegetated adjacent sediment. We hypothesized that the constant flux of nutrients under the canopy would result in a higher concentration of metazoans compared to the unvegetated sediment outside; however, the hypothesis was not confirmed by the obtained results. The habitat heterogeneity played an important role in shaping the community, yielding a greater richness in the matte. The resource specificity of the leaves (microepiphytes) was also expected to shape the community by favoring nematodes capable of exploiting this resource (epistratum feeders with scraping-like structures), such as the family Chromadoridae that dominated this habitat. In addition, the high light exposure of the leaves explains the higher concentration of ocellated nematodes in this habitat. Organic carbon and nitrogen contents had an impact on the Nematoda community composition, meanwhile average grain size only affected the abundance of nematodes with elongated/filiform tails. [ABSTRACT FROM AUTHOR]
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- 2024
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11. Confinement and semi confinement of lambs in an integrated production system: impacts on production performance, infection by gastrointestinal nematodes, and selected blood analytes.
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dos Santos Schmidt, Elizabeth Moreira, Fachiolli, Daniele Floriano, de Lima Meirelles, Paulo Roberto, de Soutello, Ricardo Velludo Gomes, Magalh Pariz, Cristiano ães, Michel de Castilhos, André, Talamini do Amarante, Alessandro Francisco, Alves de Almeida, Fabiana, Martins de Souza, Daniel, da Silva Barros, Juliana, and Costa, Ciniro
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LAMBS , *NEMATODE infections , *NEMATODES , *WEIGHT gain , *BLOOD collection , *BLOOD proteins , *CELL size , *EOSINOPHILIA - Abstract
This trial evaluated the production performance, gastrointestinal nematode infection (GIN), and selected blood analytes, in Corriedale lambs during the finishing phase in an integrated crop-livestock system (ICLS) with 2 stocking rates. Fifty-two Corriedale lambs were divided into 4 groups: a semi confinement system with a low stocking rate (T1) for 70 days; a semi confinement system with a high stocking rate (T2) for 70 days; confinement for 28 days, followed by semi confinement with a low stocking rate (T3) for 42 days; and confinement for 28 days, followed by semi confinement with a high stocking rate (T4) for 42 days. Body weight, dry matter intake, blood collection, and faecal analysis of nematode eggs were performed for each animal. The stocking rates did not influence body weight gain for the semiconfined lambs (T1 and T2) or for the confined/semiconfined lambs (T3 and T4). All treatments had lower EPG counts at the end of the experimental period. The nematode genera identified during the experiment trial were Haemonchus and Trichostrongylus. There were no significant differences (P > 0.05) for packed cell volume, total plasma protein, and eosinophil means between treatments. These results suggested that the confinement followed by semi confinement in an ICLS, was an option for lamb production during the finishing phase which could be useful in reducing GIN without affecting the production performance. [ABSTRACT FROM AUTHOR]
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- 2024
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12. GallOnt: An ontology for plant gall phenotypes.
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Deans, Andrew R, Nastasi, Louis Frank, and Davis, Charles
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GALLS (Botany) ,PHENOTYPES ,NEMATODES ,SPECIES distribution ,SPECIES diversity ,CLIMATE change - Abstract
Galls are novel plant structures that develop in response to select biotic stressors. These structures, extended phenotypes of the inducer, usually serve to protect and feed the inducer or its progeny. This life history strategy has evolved dozens of times, and tens of thousands of species — including many bacteria, fungi, nematodes, mites and insects — are capable of manipulating plants in this way. The variation in gall phenotypes is extraordinary across species but usually predictable for each species of inducer. We introduce here a new ontology, GallOnt, that facilitates consistent descriptions and the semantic representation of and reasoning over plant gall phenotype data. GallOnt was largely developed from ontologies in the Open Biological and Biomedical Ontology (OBO) Foundry and stands to connect plant gall phenotypes to knowledge derived from model plant systems, including genotype-phenotype and agricultural research. We also introduce the idea of a new gall data standard — Minimum Information for the Description of Galls (MIDG version 0.1) — as a starting point for discussions regarding cecidology best practices. [ABSTRACT FROM AUTHOR]
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- 2024
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13. Recent Data on Nematode Infestation of Anchovy (Engraulis encrasicolus) on the Romanian Black Sea Coast.
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Țoțoiu, Aurelia, Nenciu, Magda, and Niță, Victor
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ENGRAULIS encrasicolus ,MARINE fishes ,FISH populations ,PARASITIC diseases ,ABDOMEN ,PELAGIC fishes - Abstract
Marine fish populations can be affected by various infectious and parasitic diseases. The species investigated during 2021–2023 along the Romanian coast was European anchovy [Engraulis encrasicolus (Linnaeus, 1758)], a small pelagic fish with both economic and ecological value. Four species of endoparasites (nematodes) were identified, namely: Hysterothylacium sp. Ward & Magath, 1917, Contracaecum sp. Railliet & Henry, 1912, Porrocaecum sp. Railet & Henry, 1912, and Anisakis sp. Dujardin, 1845. Nematode worms were found as larvae and infested the abdominal cavity, both in the free state and enclosed in internal organs. The parameters analyzed included abundance, prevalence, and average intensity. Abundance results indicated 14 parasites/fish in length classes ranging from 11–12 cm. A prevalence of 100% was reported in the anchovy population sampled from several stations. A high level of infestation intensity was recorded in 11 cm long specimens (15 nematode worms/host). In this study, the accumulation of nematode worms was observed in large mature specimens, with a negative impact on the host organism through the presence of internal lesions, slowing of growth rate, appetite reduction, and disturbance of the reproductive process. The potential risks to anchovy stock status, threats to human health, and control measures are also tackled. [ABSTRACT FROM AUTHOR]
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- 2024
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14. Floxuridine supports UPS independent of germline signaling and proteostasis regulators via involvement of detoxification in C. elegans.
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Dubey, Abhishek Anil, Sarkar, Anwesha, Milcz, Karolina, Szulc, Natalia A., Thapa, Pankaj, Piechota, Małgorzata, Serwa, Remigiusz A., and Pokrzywa, Wojciech
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COLD adaptation , *GERM cells , *LOW temperatures , *NEMATODES , *CELL proliferation , *LONGEVITY - Abstract
The ubiquitin-proteasome system (UPS) is critical for maintaining proteostasis, influencing stress resilience, lifespan, and thermal adaptability in organisms. In Caenorhabditis elegans, specific proteasome subunits and activators, such as RPN-6, PBS-6, and PSME-3, are associated with heat resistance, survival at cold (4°C), and enhanced longevity at moderate temperatures (15°C). Previously linked to improving proteostasis, we investigated the impact of sterility-inducing floxuridine (FUdR) on UPS functionality under proteasome dysfunction and its potential to improve cold survival. Our findings reveal that FUdR significantly enhances UPS activity and resilience during proteasome inhibition or subunit deficiency, supporting worms' normal lifespan and adaptation to cold. Importantly, FUdR effect on UPS activity occurs independently of major proteostasis regulators and does not rely on the germ cells proliferation or spermatogenesis. Instead, FUdR activates a distinct detoxification pathway that supports UPS function, with GST-24 appearing to be one of the factors contributing to the enhanced activity of the UPS upon knockdown of the SKN-1-mediated proteasome surveillance pathway. Our study highlights FUdR unique role in the UPS modulation and its crucial contribution to enhancing survival under low-temperature stress, providing new insights into its mechanisms of action and potential therapeutic applications. Author summary: In our study, we investigate the ubiquitin-proteasome system (UPS) in Caenorhabditis elegans, a crucial cellular machinery for degrading and recycling misfolded or excess proteins. The efficiency of this system is vital for cell health, particularly under stress conditions such as cold. We found that floxuridine (FUdR), commonly used to induce sterility in nematodes, also triggers an alternative UPS-stimulating or UPS-relieving pathway. This supports worms' lifespan and ability to survive at low temperatures (4°C) despite proteasome deficiencies. This enhancement occurs independently of major proteostasis regulators and does not rely on reproductive pathways or conventional stress response mechanisms. Instead, FUdR activates a distinct detoxification pathway that can boost UPS activity, with GST-24 appearing to be one of the contributing factors. Our findings reveal a novel aspect of FUdR action, suggesting potential strategies for enhancing cellular resilience to environmental stress and aging in broader biological contexts. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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15. Direct and indirect costs of parasitism preceding a population decline of an Arctic ungulate.
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Dickinson, Eleanor R., Nwafor-Okoli, Chinyere, Checkley, Sylvia L., Elkin, Brett, Branigan, Marsha, Serrano, Emmanuel, and Kutz, Susan J.
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EXTREME weather , *DIRECT costing , *DEMOGRAPHIC change , *UNGULATES , *NEMATODES - Abstract
Parasites negatively affect the fitness of ungulate hosts directly, and in wild ungulates, these effects may be synzootic with other stressors, such as limited nutritional resources. In the Arctic, muskoxen (Ovibos moschatus) occur in a highly seasonal environment and must rely on finite energetic resources for survival and productivity. We investigated the costs of gastrointestinal nematodes on the body condition and reproductive status of 141 muskoxen, on Banks Island, Canada, when the population was at a peak in numbers and density. Using a Partial Least Squares Path Modelling approach, we found that high adult nematode abundance was associated with lower body condition, and high parasite abundance was associated with female reproduction including the indirect effect through on body condition (n = 87). These findings suggest that individuals prioritize energetic reserves for reproduction over parasite defence. In fall 2003, a severe icing event that restricted access to forage was associated with high overwinter mortality of muskoxen and a population crash. Through direct and indirect costs of parasite infection on body condition and reproduction, the high abundance of parasites may have contributed to the effects of this extreme weather event. Understanding the mechanisms in which parasites impact fitness can help explain the ecological drivers of ungulate populations and predict the interactions between the environment and populations. [ABSTRACT FROM AUTHOR]
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- 2024
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16. Application of fungi as biological control strategies for nematode management in horticultural crops.
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Rahman, Mati Ur, Zhong, Xiaomin, Uzair, Muhammad, and Fan, Ben
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PLANT nematodes , *HORTICULTURAL crops , *ROOT-knot nematodes , *CROP management , *FUNGI , *NEMATOCIDES , *ROOT-knot , *NEMATODES - Abstract
Plant-parasitic nematodes are a major problem for horticultural production, causing significant economic losses. Chemical nematicides are a common nematode control strategy but can negatively impact the environment and human health. In this review, we provide an overview of the use of fungi for the biological control of plant-parasitic nematodes in horticultural crops. Fungal bio-control represents an alternative, environmentally friendly strategy for managing nematodes. The use of fungi for the bio-control of nematodes has gained increasing attention due to the potential benefits of selectivity, sustainability, and long-term control. Here, we discuss the different types of fungi used for nematode management, the mechanisms of their action, the advantages and limitations of using fungi for bio-control, and the factors affecting their efficacy. Additionally, we provide several case studies of fungal bio-control against root-knot, cyst, and lesion nematodes in horticultural crops. The review concludes with a discussion of future directions and research recommendations for implementing fungal bio-control in horticultural crops. [ABSTRACT FROM AUTHOR]
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- 2024
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17. Advanced screening methods for assessing motility and hatching in plant-parasitic nematodes.
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Kadlecová, Alena, Hendrychová, Romana, Jirsa, Tomáš, Čermák, Václav, Huang, Mengmeng, Grundler, Florian M.W., and Schleker, A. Sylvia S.
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PLANT nematodes , *NEMATODES , *SUGAR beet cyst nematode , *DISSECTING microscopes , *CHITINASE , *RESEARCH personnel - Abstract
Background: Plant-parasitic nematodes are economically important pests responsible for substantial losses in agriculture. Researchers focusing on plant-parasitic nematodes, especially on finding new ways of their control, often need to assess basic parameters such as their motility, viability, and reproduction. Traditionally, these assays involve visually counting juveniles and eggs under a dissecting microscope, making this investigation time-consuming and laborious. Results: In this study, we established a procedure to efficiently determine the motility of two plant-parasitic nematode species, Heterodera schachtii and Ditylenchus destructor, using the WMicrotracker ONE platform. Additionally, we demonstrated that hatching of the cyst nematode H. schachtii can be evaluated using both the WMicrotracker ONE and by assessing the enzymatic activity of chitinase produced during hatching. Conclusions: We present fast and straightforward protocols for studying nematode motility and hatching that allow us to draw conclusions about viability and survival. Thus, these methods are useful tools for facilitating fast and efficient evaluation in various fields of research focused on plant-parasitic nematodes. [ABSTRACT FROM AUTHOR]
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- 2024
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18. Insights into the efficient degradation mechanism of extracellular proteases mediated by Purpureocillium lilacinum.
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Xiujun Zhang, Yuhong Yang, Li Liu, Xin Sui, Ramon Santos Bermudez, Lushan Wang, Wenxing He, and Huilian Xu
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GATA proteins ,PEPTIDASE ,PROTEOLYTIC enzymes ,NEMATODE-destroying fungi ,CORN flour ,YEAST extract ,ENDOPEPTIDASES - Abstract
Protease secretion is crucial for degrading nematode cuticles using nematophagous fungus Purpureocillium lilacinum, but the secretion pattern of protease remains poorly understood. This study aimed to explore the degradation mechanism of proteases by investigating the characteristics of protease secretion under various carbon and nitrogen sources, and different carbon to nitrogen (C:N) ratios in P. lilacinum. The results showed that corn flour as a carbon source and yeast extract as a nitrogen source specifically induced protease secretion in P. lilacinum. P. lilacinum produced significant amounts of gelatinase and casein enzyme at C:N ratios of 10:1, 20:1, and 40:1, indicating that higher C:N ratios were more beneficial for secreting extracellular proteases. Proteomic analysis revealed 14 proteases, including 4 S8 serine endopeptidases and one M28 aminopeptidase. Among four S8 serine peptidases, Alp1 exhibited a high secretion level at C:N ratio less than 5:1, whereas PR1C, PR1D, and P32 displayed higher secretion levels at higher C:N ratios. In addition, the transcription levels of GATA transcription factors were investigated, revealing that Asd-4, A0A179G170, and A0A179HGL4 were more prevalent at a C:N ratio of 40:1. In contrast, the transcription levels of SREP, AreA, and NsdD were higher at lower C:N ratios. The putative regulatory profile of extracellular protease production in P. lilacinum, induced by different C:N ratios, was analyzed. The findings offered insights into the complexity of protease production and aided in the hydrolytic degradation of nematode cuticles. [ABSTRACT FROM AUTHOR]
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- 2024
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19. Function and Global Regulation of Type III Secretion System and Flagella in Entomopathogenic Nematode Symbiotic Bacteria.
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Huang, Xiyin, Li, Chen, Zhang, Ke, Li, Kunyan, Xie, Jiajie, Peng, Yuyuan, Quan, Meifang, Sun, Yunjun, Hu, Yibo, Xia, Liqiu, and Hu, Shengbiao
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FLAGELLA (Microbiology) , *INSECT nematodes , *INSECT hosts , *SECRETION , *GRAM-negative bacteria , *PROTEIN expression , *NEMATODES - Abstract
Currently, it is widely accepted that the type III secretion system (T3SS) serves as the transport platform for bacterial virulence factors, while flagella act as propulsion motors. However, there remains a noticeable dearth of comparative studies elucidating the functional disparities between these two mechanisms. Entomopathogenic nematode symbiotic bacteria (ENS), including Xenorhabdus and Photorhabdus, are Gram-negative bacteria transported into insect hosts by Steinernema or Heterorhabdus. Flagella are conserved in ENS, but the T3SS is only encoded in Photorhabdus. There are few reports on the function of flagella and the T3SS in ENS, and it is not known what role they play in the infection of ENS. Here, we clarified the function of the T3SS and flagella in ENS infection based on flagellar inactivation in X. stockiae (flhDC deletion), T3SS inactivation in P. luminescens (sctV deletion), and the heterologous synthesis of the T3SS of P. luminescens in X. stockiae. Consistent with the previous results, the swarming movement of the ENS and the formation of biofilms are dominated by the flagella. Both the T3SS and flagella facilitate ENS invasion and colonization within host cells, with minimal impact on secondary metabolite formation and secretion. Unexpectedly, a proteomic analysis reveals a negative feedback loop between the flagella/T3SS assembly and the type VI secretion system (T6SS). RT-PCR testing demonstrates the T3SS's inhibition of flagellar assembly, while flagellin expression promotes T3SS assembly. Furthermore, T3SS expression stimulates ribosome-associated protein expression. [ABSTRACT FROM AUTHOR]
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- 2024
- Full Text
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20. Cereal production in Africa: the threat of current plant pathogens in changing climate-a review.
- Author
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Benjamin, Joshua, Oyedokun, David Olayinka, Oziegbe, Emmanuel Victor, Oni, Joshua, Ogundare, Emmanuel Boluwatife, Ujah, Godswill Ofuowoichoyama, and Adebayo, Aminat
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CEREAL products , *PHYTOPATHOGENIC microorganisms , *CLIMATE change , *PYRICULARIA oryzae - Abstract
In Sub-Saharan Africa, cereals are threatened by stress-inducing microbial pathogens and parasites such as fungi, bacteria, viruses and nematodes leading to significant losses. Mycotoxin-producing fungi like Fusarium graminearum induce head blight disease causing 30–70% of yield losses in wheat. In comparison, Fusarium verticillioides accounts for ear rot diseases that account for 13–70% of maize yield losses in Sub-Saharan Africa. Outbreaks of the devastating rice blast pathogen Magnaporthe oryzae have caused up to 48% yield losses of rice in Kenya. The grey leaf spot fungus, C. zeina, gradually becomes a threat to maize production, causing a 65% yield loss in South Africa. Maize smut and ergot-causing pathogens, Sporisorium ehrenbergii and Claviceps africana, under mildly humid and cold climatic conditions, impact grain quality and market value. The maize streak virus predominantly ravages maize fields all over Sub-Saharan Africa causing 30–100% yield losses while the diseases caused by the bacterium Xanthomonas oryzae pv. oryzae has led to 10 to 50% yield losses in rice production. In Nigeria, nematode pathogens like Pratylenchus spp have been reported to cause yield losses of up to 27% in maize production. This review fundamentally discusses these cereal pathogens and their current and future impact in the face of climate change in Africa. We seriously emphasize the need for more simulation studies on each of these pathogens across Sub-Saharan Africa and their potential impact under current and future climate change scenarios. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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21. High rates of benzimidazole-resistance-associated alleles in Haemonchus contortus and detection of resistance against macrocyclic lactones in strongylids from German alpaca herds.
- Author
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Hinney, Barbara, Wiedermann, Sandra, Vaneev, Xenia, Muhm, Katharina, Joachim, Anja, and Wittek, Thomas
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- *
HAEMONCHUS contortus , *IVERMECTIN , *FECAL egg count , *ALPACA , *EGG cases (Zoology) , *SUSTAINABILITY - Abstract
The population of South American camelids (SAC) has been steadily growing in Europe, where they are confronted with the regional endoparasite population of ruminants. As there are no anthelmintic drugs registered for use against nematode infections in SACs, anthelmintics (AH) available for ruminants or horses are usually applied. Reports indicating potential failures in administered AH are increasing. However, the generally low egg counts in SACs complicate the application of resistance tests in the field. The present study reports a follow-up study on SAC farms where anthelmintic resistance (AR) was suspected. The aims were (i) to repeat faecal egg count reduction tests (FECRTs) on potentially affected farms identified in a previous study with larger sample sizes, (ii) to verify suspected AR of Haemonchus contortus against benzimidazoles (BZ) by performing a single-nucleotide polymorphism (SNP) analysis using digital polymerase chain reaction (dPCR), and (iii) to apply the mini-FLOTAC technique for more reliable results at low egg counts in line with current recommendations. Seven farms (9–46 animals each) were examined by coproscopy, larval differentiation and SNP analysis. A FECRT was performed on six of these farms with moxidectin (three farms), monepantel (two farms) and ivermectin (one farm). The FEC was calculated according to the current World Association for the Advancement of Veterinary Parasitology (WAAVP) guidelines with the clinical protocol (a newly introduced variant of FECRT which can be used for smaller sample sizes and lower egg counts on the cost of sensitivity) and an expected efficacy of 99%. A high level (> 90%) of BZ-resistance-associated SNPs on codon 200 of H. contortus was observed on all farms. With the FECRT, resistance was demonstrated for ivermectin (74% FECR), while it remained inconclusive for one farm for moxidectin treatment. Sustained efficacy was demonstrated for the remaining treatments. This study showed an advanced level of BZ resistance in H. contortus of SACs and the development of AR against macrocyclic lactones on some farms. Thus, constant monitoring of AH treatment and sustainable worm control methods both need to be applied. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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22. Counting nematodes made easy: leveraging AI-powered automation for enhanced efficiency and precision.
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Saikai, Kanan K., Bresilla, Trim, Kool, Janne, de Ruijter, Norbert C. A., van Schaik, Casper, and Teklu, Misghina G.
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ARTIFICIAL intelligence ,MACHINE learning ,DEEP learning ,NEMATODES ,CONVOLUTIONAL neural networks ,GRAPHICAL user interfaces ,PLANT nematodes ,SOUTHERN root-knot nematode - Abstract
Counting nematodes is a labor-intensive and time-consuming task, yet it is a pivotal step in various quantitative nematological studies; preparation of initial population densities and final population densities in pot, micro-plot and field trials for different objectives related to management including sampling and location of nematode infestation foci. Nematologists have long battled with the complexities of nematode counting, leading to several research initiatives aimed at automating this process. However, these research endeavors have primarily focused on identifying single-class objects within individual images. To enhance the practicality of this technology, there’s a pressing need for an algorithm that cannot only detect but also classify multiple classes of objects concurrently. This study endeavors to tackle this challenge by developing a user-friendly Graphical User Interface (GUI) that comprises multiple deep learning algorithms, allowing simultaneous recognition and categorization of nematode eggs and second stage juveniles of Meloidogyne spp. In total of 650 images for eggs and 1339 images for juveniles were generated using two distinct imaging systems, resulting in 8655 eggs and 4742 Meloidogyne juveniles annotated using bounding box and segmentation, respectively. The deep-learning models were developed by leveraging the Convolutional Neural Networks (CNNs) machine learning architecture known as YOLOv8x. Our results showed that the models correctly identified eggs as eggs and Meloidogyne juveniles as Meloidogyne juveniles in 94% and 93% of instances, respectively. The model demonstrated higher than 0.70 coefficient correlation between model predictions and observations on unseen images. Our study has showcased the potential utility of these models in practical applications for the future. The GUI is made freely available to the public through the author’s GitHub repository (https://github.com/bresilla/ nematode_counting). While this study currently focuses on one genus, there are plans to expand the GUI’s capabilities to include other economically significant genera of plant parasitic nematodes. Achieving these objectives, including enhancing the models’ accuracy on different imaging systems, may necessitate collaboration among multiple nematology teams and laboratories, rather than being the work of a single entity. With the increasing interest among nematologists in harnessing machine learning, the authors are confident in the potential development of a universal automated nematode counting system accessible to all. This paper aims to serve as a framework and catalyst for initiating global collaboration toward this important goal. [ABSTRACT FROM AUTHOR]
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- 2024
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23. Histopathological, morphological, and molecular characterization of fish-borne zoonotic parasite Eustrongylides Excisus infecting Northern pike (Esox lucius) in Iran.
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Rahmati-Holasoo, Hooman, Azizzadeh, Mohammad, Ebrahimzadeh Mousavi, Hosseinali, Shokrpoor, Sara, Ziafati Kafi, Zahra, and Marandi, Amin
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- *
HISTOPATHOLOGY , *PARASITES , *SKELETAL muscle , *MYOSITIS , *NEMATODES , *FISH morphology , *DERMATOMYOSITIS - Abstract
Eustrongylides excisus is a fish-borne zoonotic parasite known to infect various fish species, including Northern pike (Esox Lucius). This nematode, belonging to the family Dioctophymatidae, has a complex life cycle involving multiple hosts. This study aimed to investigate the occurrence of Eustrongylides nematodes in Northern pike (E. Lucius) collected from Mijran Dam (Ramsar, Iran). Between June and October 2023, an investigation was conducted on Northern pike from Mijran Dam in Ramsar, Iran, following reports of reddish parasites in their muscle tissues. Sixty fish were examined at the University of Tehran, revealing live parasites in the muscles, which were then analyzed microscopically and preserved for a multidisciplinary study. The skeletal muscle tissues of 85% (51/60) of fish specimens were infected by grossly visible larvae which were microscopically identified as Eustrongylides spp. In histopathological examination, the lesion was composed of encapsulated parasitic granulomatous myositis. Microscopically, the cystic parasitic granulomas compressed the adjacent muscle fibers, leading to their atrophy and Zenker's necrosis. Moreover, epithelioid macrophages, giant cells and mononuclear inflammatory cells were present around the larvae and between the muscle fibers. Finally, a molecular analysis by examining the ITS gene region, revealed that they belong to the species E. excisus. Eustrongylidiasis in northern Iran necessitates further research into the biology, epidemiology, and control of Eustrongylides nematodes, focusing on various hosts. This study is the first to comprehensively characterize E. excisus in Northern pike in Ramsar, Iran, raising concerns about possible zoonotic transmission. [ABSTRACT FROM AUTHOR]
- Published
- 2024
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24. Dirofilariasis in Male Genitalia: A Case Report and Literature Review.
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Žulpaitė, Rūta, Patašius, Aušvydas, and Drachneris, Julius
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- *
MALE reproductive organs , *LITERATURE reviews , *NEMATODES , *CUTICLE , *ABSCESSES - Abstract
Human dirofilariasis is a rare anthropo-zoonotic disease, mainly detected in Southern and Eastern Europe, Asia Minor, Central Asia, and Sri Lanka. An increasing number of autochthonous Dirofilaria spp. infections has been recently reported in the areas previously considered free of the disease, including northern Europe and the Baltic States. A rare autochthonous case of scrotal dirofilariasis detected in Lithuania was described. Here, a 42-year-old male presented with a 1 cm nodule, limited in the scrotum. A nodule excision was performed. On histological examination, a degenerating roundworm with the features of Dirofilaria spp. (multilayered cuticle, well-developed musculature, focally preserved longitudinal ridges) was detected in the abscess cavity. No additional treatment was needed. Twenty-four publications reporting 28 male genitalia dirofilariasis cases in European countries have been identified. [ABSTRACT FROM AUTHOR]
- Published
- 2024
25. Detection of Parasites in Locally Sourced Fresh Fruits and Vegetables Using Various Diagnostic Techniques.
- Author
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Ahmed, Chreska N., Koyee, Qaraman M. K., Kanabe, Lana O., Faraj, Abbas M., and Rahemo, Zohair I. F.
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- *
PRODUCE markets , *SEDIMENTATION & deposition , *CRYPTOSPORIDIUM , *OVUM , *NEMATODES , *GIARDIA lamblia - Abstract
A prospective study was conducted from September 2022 to March 2023 to examine the occurrence and contamination rates of different parasitic stages on fresh edible fruits and vegetables in local markets of Erbil city. Eight different types of fruits and vegetables were selected from eight markets, and 144 samples were analyzed for parasites using direct sedimentation, indirect floatation (ZnSO4), Kinyoun, and trichrome staining methods. The highest total frequencies of parasites were detected using the direct sedimentation method (18.75%), followed by the indirect floatation method (6.25%), Kinyoun technique (5.55%), and modified trichrome staining (4.16%). A. lumbricoides (Ova) was detected with 4.16% using direct sedimentation, while no positive detections were observed with other techniques. Kinyoun technique identified Cryptosporidium spp. oocysts. For E. histolytica 1.3% were positive using the direct sedimentation method, while the other three methods showed no positive detections. Similar results were observed for G. lamblia where only the modified trichrome staining technique detected 0.69% with trophozoites and 1.3% with cysts. Additionally, the direct sedimentation method revealed the presence of nematodes at 2.77%, but no positive detections were made with other methods. Concerning Taeniid eggs, the indirect floatation identified 0.69% with ova, while other methods showed no positive detections. Lastly, the direct sedimentation method yielded 6.25% with unidentified flagellate protozoa, but no positive detections were found using the indirect floatation method, Kinyoun technique, or modified trichrome staining technique. The study concluded that Kinyoun and trichrome techniques are the gold standard for detecting different parasite stages. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
26. Evaluation of the effect of infection with Aphelenchoides besseyi on yield elements in rice varieties and lines.
- Author
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Tosheva, Svilena and Markova, Dima
- Subjects
- *
SYMPTOMS , *NEMATODES , *SEEDS , *INFECTION , *PERCENTILES - Abstract
The study was conducted during the period 2019-2021 under field conditions and artificial infection with Aphelenchoides besseyi Christie (rice white tip nematode). Four varieties and two lines of rice were tested. The lowest percentage of plants showing symptoms of „white tip” is the variety CRLB 1. The variety Cameo is highly susceptible to infection with a higher number of nematodes in the seeds. Artificial infection leads to a decrease in the values of the panicle length, the total number of grains per panicle, the weight of one panicle, the weight of the grain in a panicle and the weight of 1000 grains in plants showing symptoms. In the varieties Osmanchik 97, Cameo and line No 19 a larger decrease in the yield by elements was found. [ABSTRACT FROM AUTHOR]
- Published
- 2024
27. Evaluation of Ointments with Daldinia eschscholtzii in Wound Healing in an In Vivo Model.
- Author
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Cueva-Clavijo, Reina Isabel, Téllez-Téllez, Maura, Aguilar-Marcelino, Liliana, Wong-Villarreal, Arnoldo, Acosta-Urdapilleta, Ma de Lourdes, Castañeda-Ramírez, Gloria Sarahi, Montañez-Palma, Lilia F., and Hernández-Núñez, Emanuel
- Subjects
- *
WOUND healing , *MORTALITY , *WOUNDS & injuries , *EDIBLE mushrooms , *PHENOMENOLOGICAL biology , *DUST , *DATA analysis , *OINTMENTS , *GENETIC markers , *NEMATODES , *FUNGI , *IN vivo studies , *DESCRIPTIVE statistics , *MICE , *PLANT extracts , *ANIMAL experimentation , *RESEARCH in alternative medicine , *MOLECULAR structure , *ANALYSIS of variance , *STATISTICS , *MICROBIOLOGY , *DATA analysis software , *TOXICITY testing - Abstract
Fungi are a source of a variety of secondary metabolites of importance in different areas of biotechnology. Several compounds have been characterized with antioxidant, antimicrobial, and anti-inflammatory activity from fungi of the division of the Ascomycota, among which is the species Daldinia eschscholtzii, an endophyte fungus of pantropical distribution. In this study, we evaluated the effect of an ointment made with D. eschscholtzii on the wound healing of BALB/c mice. The species was corroborated using a molecular marker Internal Transcribed Spacer (ITS1 and ITS4). The extracts and dust of the fungus were considered nontoxic as they caused a mortality of <15% in the nematode Panagrellus redivivus, and experimental ointments had no adverse effects on the skin of BALB/c mice. Wounds treated with the D. eschscholtzii ointments had 99.9–100% wound contraction after 17 days, which was similar to commercial healing (positive control). As such, the ointment of D. eschscholtzii is a natural alternative to improve wound healing. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
28. Wuchereria bancrofti Lymphatic Filariasis, Barrancabermeja, Colombia, 2023.
- Author
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Suárez, José A., Vargas-Soler, Jose A., Manosalva-Arciniegas, Laura Isabel, Becerra-González, Stephanie, Ramirez, Angie L., Cáceres, Tatiana, Luna, Nicolas, Ramírez, Juan David, and Paniz-Mondolfi, Alberto
- Subjects
- *
FILARIASIS , *HUMAN migration patterns , *NEMATODES - Abstract
We describe a recent case of lymphatic filariasis in Colombia caused by Wuchereria bancrofti nematodes. Our study combines clinical-epidemiologic findings with phylogenetic data. Resurgence of lymphatic filariasis may be linked to increasing urbanization trends and migration from previously endemic regions. Fieldwork can be a beneficial tool for screening and containing transmission. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
29. Genomic Regions Associated with Resistance to Gastrointestinal Parasites in Australian Merino Sheep.
- Author
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Vera, Brenda, Navajas, Elly A., Peraza, Pablo, Carracelas, Beatriz, Van Lier, Elize, and Ciappesoni, Gabriel
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MERINO sheep , *FECAL egg count , *ANIMAL welfare , *SHEEP , *HAEMONCHUS contortus - Abstract
The objective of this study was to identify genomic regions and genes associated with resistance to gastrointestinal nematodes in Australian Merino sheep in Uruguay, using the single-step GWAS methodology (ssGWAS), which is based on genomic estimated breeding values (GEBVs) obtained from a combination of pedigree, genomic, and phenotypic data. This methodology converts GEBVs into SNP effects. The analysis included 26,638 animals with fecal egg count (FEC) records obtained in two independent parasitic cycles (FEC1 and FEC2) and 1700 50K SNP genotypes. The comparison of genomic regions was based on genetic variances (gVar(%)) explained by non-overlapping regions of 20 SNPs. For FEC1 and FEC2, 18 and 22 genomic windows exceeded the significance threshold (gVar(%) ≥ 0.22%), respectively. The genomic regions with strong associations with FEC1 were located on chromosomes OAR 2, 6, 11, 21, and 25, and for FEC2 on OAR 5, 6, and 11. The proportion of genetic variance attributed to the top windows was 0.83% and 1.9% for FEC1 and FEC2, respectively. The 33 candidate genes shared between the two traits were subjected to enrichment analysis, revealing a marked enrichment in biological processes related to immune system functions. These results contribute to the understanding of the genetics underlying gastrointestinal parasite resistance and its implications for other productive and welfare traits in animal breeding programs. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
30. Procjena ekotoksičnosti mikroplastike i nanoplastike na gujavice (kolutićavci, Annelida) i obliće (Nematoda) u tlu.
- Author
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Čemerika, E., Knežević, A., Milički, D., and Miloloža, M.
- Abstract
It is common knowledge that plastic pollution has become one of the foremost environmental problems worldwide. Despite the increasing rates in plastic products recycling, the majority of plastic still finds its way unchecked into the environment. Plastic in itself poses no substantial threat to ecosystems, unlike its degraded components, microplastics (MP) and nanoplastics (NP), which are more reactive and easier to transport due to their reduced size. In recent years, the increasing demand, production, and utilisation of products originally manufactured in the form of MP and NP have further exacerbated the pollution problem. Once released, MPs and NPs tend to accumulate more in terrestrial ecosystems than in aquatic environments, an area that has been researched more comprehensively. Consequently, the degraded components of plastic accumulate within soil-dwelling organisms, which can then further break them down (degrade) through their metabolism. The aim of this study was to provide an overview of the ecotoxicity of MP and NP specifically on earthworms, as representatives of the phylum annelid worm (Annelida), and on nematodes (phylum Nematoda), the two most prevalent groups of soil-dwelling invertebrates. Research into the effects of MP and NP on earthworms has so far been conducted on the species Eisenia fetida, Eisenia andrei, and Lumbricus terrestris, with the species Caenorhabditis elegans serving as a representative nematode species. These organisms were exposed to polyethylene (PE), polystyrene (PS), and polypropylene (PP) particles of varying sizes and concentrations. The results of numerous studies on the harmful effects of these polymeric materials on earthworms and nematodes were measured by testing for inhibition of survival and growth rate, showing significant body weight loss, along with damage to the digestive system, and oxidative stress. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
31. Cyprocide selectively kills nematodes via cytochrome P450 bioactivation.
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Knox, Jessica, Burns, Andrew R., Cooke, Brittany, Cammalleri, Savina R., Kitner, Megan, Ching, Justin, Castelli, Jack M. P., Puumala, Emily, Snider, Jamie, Koury, Emily, Collins, J. B., Geissah, Salma, Dowling, James J., Andersen, Erik C., Stagljar, Igor, Cowen, Leah E., Lautens, Mark, Zasada, Inga, and Roy, Peter J.
- Subjects
CYTOCHROME P-450 ,NEMATODES ,NEMATOCIDES ,FOOD supply - Abstract
Left unchecked, plant-parasitic nematodes have the potential to devastate crops globally. Highly effective but non-selective nematicides are justifiably being phased-out, leaving farmers with limited options for managing nematode infestation. Here, we report our discovery of a 1,3,4-oxadiazole thioether scaffold called Cyprocide that selectively kills nematodes including diverse species of plant-parasitic nematodes. Cyprocide is bioactivated into a lethal reactive electrophilic metabolite by specific nematode cytochrome P450 enzymes. Cyprocide fails to kill organisms beyond nematodes, suggesting that the targeted lethality of this pro-nematicide derives from P450 substrate selectivity. Our findings demonstrate that Cyprocide is a selective nematicidal scaffold with broad-spectrum activity that holds the potential to help safeguard our global food supply. Plant-parasitic nematodes have the potential to destroy crops globally, and limited options for managing nematode infestation are available. Here, the authors report the 1,3,4-oxadiazole thioether scaffold called Cyprocide that selectively kills nematodes including diverse species of plant-parasitic nematodes. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
32. Biofumigation Treatment Using Tagetes patula , Sinapis alba and Raphanus sativus Changes the Biological Properties of Replanted Soil in a Fruit Tree Nursery.
- Author
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Wieczorek, Robert, Zydlik, Zofia, and Zydlik, Piotr
- Subjects
CYTOCHROME oxidase ,NEMATODE-plant relationships ,SOIL nematodes ,PLANT nematodes ,CROP rotation - Abstract
Apple replant disease (ARD) may cause significant losses both in commercial orchards and in fruit tree nurseries. The negative effects of ARD may be limited by using biofumigation. The aim of the study was to assess the influence of this treatment on the biological properties of replanted soil in a tree nursery. In two-year experiment, apple trees of the 'Golden Delicious' cultivar were used. The trees were planted into soil from two sites. The soil from one site had not been used in a nursery before (crop rotation soil). The other soil had been used for the production of apple trees (replanted soil). Three species of plants were used in the replanted soil as a forecrop: French marigold (Tagetes patula), white mustard (Sinapis alba), and oilseed radish (Raphanus sativus var. oleifera). The following parameters were assessed in the experiment: the enzyme and respiratory activity of the soil, the total count of bacteria, fungi, oomycetes and actinobacteria in the soil, as well as the count and species composition of soil nematodes. The vegetative growth parameters of the apple trees were also assessed. The biological properties of the replanted soil were worse than those of the crop rotation soil. In the replanted soil, the organic matter content, enzyme and respiratory activity as well as the count of soil microorganisms were lower. The biofumigants, used as a forecrop on the replanted soil, significantly increased its enzyme activity and respiratory activity. Dehydrogenase activity increased more than twofold. Growth parameters of the trees were significantly improved. The height of the trees increased by more than 50%, and the leaf area, weight and total length of side shoots were higher as well. The density of nematodes in the replanted soil after biofumigation was significantly reduced, with a larger reduction in the marigold fumigated soil. Eight of the eleven nematode species were completely reduced in the first year after biofumigation treatment. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
33. Integrated Benefits to Agriculture with Trichoderma and Other Endophytic or Root-Associated Microbes.
- Author
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Harman, Gary E.
- Subjects
INSECT-fungus relationships ,PLANT-microbe relationships ,PLANT yields ,CHEMICAL systems ,BIOLOGICAL systems - Abstract
The use of endophytic microbes is increasing in commercial agriculture. This review will begin with a strain selection. Most strains will not function well, so only a few provide adequate performance. It will also describe the endophyte–plant relationship and the fungi and bacteria involved. Their abilities to alleviate biotic (diseases and pests) and abiotic stresses (drought, salt, and flooding) to remediate pollution and increase photosynthetic capabilities will be described. Their mechanisms of action will be elucidated. These frequently result in increased plant yields. Finally, methods and practices for formulation and commercial use will be described. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
34. Genome sequences of key bacterial symbionts of entomopathogenic nematodes: Xenorhabdus cabanillasii DSM17905, Xenorhabdus ehlersii DSM16337, Xenorhabdus japonica DSM16522, Xenorhabdus koppenhoeferii DSM18168, and Xenorhabdus mauleonii DSM17908.
- Author
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Robertson, Raegan, Conrad, Katie, Ahuja, Baarik, Göker, Markus, Hahnke, Richard, Spunde, Alex, Ivanova, Natalia, Seshadri, Rekha, and Stephens, Craig
- Subjects
Xenorhabdus ,entomopathogen ,nematodes ,secondary metabolism - Abstract
Xenorhabdus species are bacterial symbionts of entomopathogenic Steinernema nematodes, in which they produce diverse secondary metabolites implicated in pathogenesis. To expand resources for natural product prospecting and exploration of host-symbiont-pathogen relationships, the genomes of Xenorhabdus cabanillasi, Xenorhabdus ehlersii, Xenorhabdus japonica, Xenorhabdus koppenhoeferii, and Xenorhabdus mauleonii were analyzed.
- Published
- 2023
35. Therapeutic efficacy of a three-component anthelmintic drug against cestodosis and nematodosis of small domestic animals
- Author
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T. S. Filatova
- Subjects
dogs ,cats ,nematodes ,cestodes ,oxantel ,pyrantel ,praziquantel ,efficacy ,Biology (General) ,QH301-705.5 - Abstract
The purpose of the study therapeutic efficacy of combined anthelmintic drug on dogs and cats of different age groups naturally infected with cestodes and nematodes.Materials and methods. The study drug in the suspension form contains oxantel pamoate, pyrantel pamoate, praziquantel, and additives as active ingredients. The therapeutic efficacy of the drug was evaluated on 228 animals naturally infected with nematodes or cestodes in the Podolsk Experimental Production Base of the VNIIP – FSC VIEV. The animals were divided into experimental and control groups of 6 animals each. The experimental dogs and cats were administered the study drug while the control animals were not given the drug. Clinical examinations and laboratory tests of fecal samples were performed on days 10, 20 and 30 after the start of the experiment. The method of helminthoscopy was used to detect segments and helminthoovoscopy as per Fülleborn to detect helminth eggs/cocoons in animal fecal samples with their subsequent differentiation. The results were statistically processed by the Student method using Microsoft Excel 2016.Results and discussion. It was found that anthelmintic drug based on oxantel pamoate, pyrantel pamoate and praziquantel had high therapeutic efficacy against parasitism in dogs and cats of nematodes Toxocara spp., Toxascaris leonina, Trichuris vulpis, Uncinaria stenocephala, Ancylostoma spp. and cestodes Echinococcus spp. (except for cats), Mesocestoides spp., Taenia spp., Dipylidium caninum, and Diphyllobothrium latum. When the drug was used in the animals of different age groups, no side effects or complications were recorded.
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- 2024
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- View/download PDF
36. Morphologic and Molecular Identification of Human Ocular Infection Caused by Pelecitus Nematodes, Thailand
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Ploysai Rujkorakarn, Pukkapol Suvannachart, Samadhi Patamatamkul, Tongjit Thanchomnang, Pairot Pramual, Weerachai Saijuntha, Wanchai Maleewong, and Shigehiko Uni
- Subjects
ocular parasitosis ,parasites ,zoonoses ,Pelecitus ,nematodes ,filariae ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Nematodes of the Onchocercidae family, such as Pelecitus spp., are filarial parasites of medical and veterinary importance. Although infections are widely distributed among avian species, only 2 cases of human Pelecitus ocular infection, both in South America, have been reported. We describe a 61-year-old man in northeast Thailand diagnosed with an ocular infection. Morphologic characteristics suggested the causative agent was a female Pelecitus nematode: coiled body, rounded anterior and posterior extremities, a distinct preesophageal cuticular ring, lateral alae, a postdeirid, and a protuberant vulva. Sequences of the 12S rDNA gene indicated 95%–96% identity and cox1 gene 92%–96% identity with published P. copsychi sequences. P-distance for cox1 sequences between the causative agent and P. copsychi was 6.71%. Phylogenetic trees of 12S rDNA and cox1 genes indicated the species differed from but is closely associated with P. copsychi. Healthcare providers should be aware of the threat of ocular infection from Pelecitus spp. nematodes.
- Published
- 2024
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37. Comparative efficacy of Levamisole, Mebendalzole and Pyrantel Pamoate against common intestinal nematodes among children in Calabar, South-South Nigeria
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Oringanje C, Ekenjoku AJ, and Meremikwu MM
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anthelminthic ,nematodes ,children ,nigeria ,Medicine - Abstract
Introduction: Continued endemicity of intestinal nematodes infestation in children in our environment despite availability of potent and safe anthelmintic drugs is of public health interest. Objective: This study assessed the comparative efficacy of selected anthelmintic drugs namely Mebendazole, pyrantel pamoate and levamisole-against common intestinal nematodes namely Ascaris lumbricoides, Hookworm (Ancylostoma duodenale and Necator amer icanus) and Trichuris trichuria in children in Calabar Municipality, South- South Nigeria Method: One hundred and thirty eight pupils from four primary schools in Ikot Ishie/Ikot Ansa communities of Calabar with worm infestation (Ascaris, hookworm and Trichuris including mixed infestation) were randomized by simple balloting to one of the following anthelmintic drugs (Mebendazole 500mg, Pyrantel 10mg/kg or Levamisole 2.5mg/ kg). The efficacy of the drugs was determined by the level of clearance of worm egg/ova from fresh stool samples of the pupils on post-treatment examination. Result: The study showed the three anthelmintic drugs displaying one hundred percent (100%) efficacy in respect of Ascaris and trichuris worms, but less so for hookworm. Mebendazole displayed 90.48%, Pyrantel 45.16%) and Levamisole (17.86%) efficacy level against hookworm. Conclusion: The overall result indicates that Mebendazole was the most efficacious agent against the three common intestinal worms.
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- 2024
38. High rates of benzimidazole-resistance-associated alleles in Haemonchus contortus and detection of resistance against macrocyclic lactones in strongylids from German alpaca herds
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Barbara Hinney, Sandra Wiedermann, Xenia Vaneev, Katharina Muhm, Anja Joachim, and Thomas Wittek
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Anthelmintic efficacy ,Anthelmintic resistance ,Nematodes ,dPCR ,Benzimidazoles ,Moxidectin ,Infectious and parasitic diseases ,RC109-216 - Abstract
Abstract The population of South American camelids (SAC) has been steadily growing in Europe, where they are confronted with the regional endoparasite population of ruminants. As there are no anthelmintic drugs registered for use against nematode infections in SACs, anthelmintics (AH) available for ruminants or horses are usually applied. Reports indicating potential failures in administered AH are increasing. However, the generally low egg counts in SACs complicate the application of resistance tests in the field. The present study reports a follow-up study on SAC farms where anthelmintic resistance (AR) was suspected. The aims were (i) to repeat faecal egg count reduction tests (FECRTs) on potentially affected farms identified in a previous study with larger sample sizes, (ii) to verify suspected AR of Haemonchus contortus against benzimidazoles (BZ) by performing a single-nucleotide polymorphism (SNP) analysis using digital polymerase chain reaction (dPCR), and (iii) to apply the mini-FLOTAC technique for more reliable results at low egg counts in line with current recommendations. Seven farms (9–46 animals each) were examined by coproscopy, larval differentiation and SNP analysis. A FECRT was performed on six of these farms with moxidectin (three farms), monepantel (two farms) and ivermectin (one farm). The FEC was calculated according to the current World Association for the Advancement of Veterinary Parasitology (WAAVP) guidelines with the clinical protocol (a newly introduced variant of FECRT which can be used for smaller sample sizes and lower egg counts on the cost of sensitivity) and an expected efficacy of 99%. A high level (> 90%) of BZ-resistance-associated SNPs on codon 200 of H. contortus was observed on all farms. With the FECRT, resistance was demonstrated for ivermectin (74% FECR), while it remained inconclusive for one farm for moxidectin treatment. Sustained efficacy was demonstrated for the remaining treatments. This study showed an advanced level of BZ resistance in H. contortus of SACs and the development of AR against macrocyclic lactones on some farms. Thus, constant monitoring of AH treatment and sustainable worm control methods both need to be applied. Graphical Abstract
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- 2024
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39. Cereal production in Africa: the threat of current plant pathogens in changing climate-a review
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Joshua Benjamin, David Olayinka Oyedokun, Emmanuel Victor Oziegbe, Joshua Oni, Emmanuel Boluwatife Ogundare, Godswill Ofuowoichoyama Ujah, and Aminat Adebayo
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Cereals ,Fungi ,Bacteria ,Viruses ,Nematodes ,Sub-Saharan Africa ,Agriculture (General) ,S1-972 ,Environmental sciences ,GE1-350 - Abstract
Abstract In Sub-Saharan Africa, cereals are threatened by stress-inducing microbial pathogens and parasites such as fungi, bacteria, viruses and nematodes leading to significant losses. Mycotoxin-producing fungi like Fusarium graminearum induce head blight disease causing 30–70% of yield losses in wheat. In comparison, Fusarium verticillioides accounts for ear rot diseases that account for 13–70% of maize yield losses in Sub-Saharan Africa. Outbreaks of the devastating rice blast pathogen Magnaporthe oryzae have caused up to 48% yield losses of rice in Kenya. The grey leaf spot fungus, C. zeina, gradually becomes a threat to maize production, causing a 65% yield loss in South Africa. Maize smut and ergot-causing pathogens, Sporisorium ehrenbergii and Claviceps africana, under mildly humid and cold climatic conditions, impact grain quality and market value. The maize streak virus predominantly ravages maize fields all over Sub-Saharan Africa causing 30–100% yield losses while the diseases caused by the bacterium Xanthomonas oryzae pv. oryzae has led to 10 to 50% yield losses in rice production. In Nigeria, nematode pathogens like Pratylenchus spp have been reported to cause yield losses of up to 27% in maize production. This review fundamentally discusses these cereal pathogens and their current and future impact in the face of climate change in Africa. We seriously emphasize the need for more simulation studies on each of these pathogens across Sub-Saharan Africa and their potential impact under current and future climate change scenarios.
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- 2024
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40. Molecular detection of gene encodes a β-tubulin protein in Haemonchus contortus in sheep in Al-Qadisiyah province, Iraq
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Athraa N. Abed and Monyer A. Al-Fatlawi
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anthelmintic resistance ,nematodes ,strongylidae ,stomach worm ,Veterinary medicine ,SF600-1100 - Abstract
β-tubulin protein is essential to parasitic resistance against widely used anthelmintic drugs. Many world countries are facing major challenges due to the failure of anthelmintic drugs, due to resistance, to eliminate parasitic infection in different animals, mainly sheep. So, there is a significant need to increase research focusing on parasites' resistance components, especially β-tubulin. Accordingly, the present study was conducted to identify and examine the genetic evolution of the β-tubulin gene responsible for synthesizing the β-tubulin protein in Haemonchus contortus in sheep. Here, 250 slaughtered sheep were explored, and 21 nematodes were collected and utilized in microscopic (10 nematodes) by placing each worm on a glass slide and exploring it under a light microscope at 10X magnification. In addition, 11 nematodes were set for molecular (PCR and sequencing) methods. The microscopic detection demonstrated the identification of the worm. The results revealed the amplification of the gene region in 11 worms. The sequencing of the nematodes showed the identification of 10 isolates closely similar to isolates from Sweden, with a similarity rate of up to 98%. The study's data report the major presence of the β-tubulin gene, which might be responsible for the drug due to drug resistance, and reveal important information about the genetic evolution of this gene that presents critical data about drug resistance development in the current study isolates of Haemonchus contortus.
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- 2024
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41. Wuchereria bancrofti Lymphatic Filariasis, Barrancabermeja, Colombia, 2023
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José A. Suárez, Jose A. Vargas-Soler, Laura Isabel Manosalva-Arciniegas, Stephanie Becerra-González, Angie L. Ramirez, Tatiana Cáceres, Nicolas Luna, Juan David Ramírez, and Alberto Paniz-Mondolfi
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Wuchereria bancrofti ,Colombia ,lymphatic filariasis ,parasites ,nematodes ,mosquito-borne ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
We describe a recent case of lymphatic filariasis in Colombia caused by Wuchereria bancrofti nematodes. Our study combines clinical-epidemiologic findings with phylogenetic data. Resurgence of lymphatic filariasis may be linked to increasing urbanization trends and migration from previously endemic regions. Fieldwork can be a beneficial tool for screening and containing transmission.
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- 2024
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42. Seroprevalence of strongyloides stercoralis in patients about to receive immunosuppressive treatment in Gran Canaria (Spain)
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Carranza-Rodriguez, Cristina, Lopez-Delgado, Laura, Granados-Magan, Alvaro, and Perez-Arellano, Jose-Luis
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- 2023
43. Inference of essential genes in Brugia malayi and Onchocerca volvulus by machine learning and the implications for discovering new interventions
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Túlio L. Campos, Pasi K. Korhonen, Neil D. Young, Bill C.H. Chang, and Robin B. Gasser
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Essential genes ,Machine learning ,Brugia malayi ,Onchocerca volvulus ,Filarioid ,Nematodes ,Biotechnology ,TP248.13-248.65 - Abstract
Detailed explorations of the model organisms Caenorhabditis elegans (elegant worm) and Drosophila melanogaster (vinegar fly) have substantially improved our knowledge and understanding of biological processes and pathways in metazoan organisms. Extensive functional genomic and multi-omic data sets have enabled the discovery and characterisation of ‘essential’ genes that are critical for the survival of these organisms. Recently, we showed that a machine learning (ML)-based pipeline could be utilised to predict essential genes in both C. elegans and D. melanogaster using features from DNA, RNA, protein and/or cellular data or associated information. As these distantly-related species are within the Ecdysozoa, we hypothesised that this approach could be suited for non-model organisms within the same group (phylum) of protostome animals. In the present investigation, we cross-predicted essential genes within the phylum Nematoda – between C. elegans and the parasitic filarial nematodes Brugia malayi and Onchocerca volvulus, and then ranked and prioritised these genes. Highly ranked genes were linked to key biological pathways or processes, such as ribosome biogenesis, translation and RNA processing, and were expressed at relatively high levels in the germline, gonad, hypodermis and/or nerves. The present in silico workflow is hoped to expedite the identification of drug targets in parasitic organisms for subsequent experimental validation in the laboratory.
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- 2024
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44. Synthesis of Nano Sulfur/Chitosan-Copper Complex and Its Nematicidal Effect against Meloidogyne incognita In Vitro and on Coffee Pots
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Hong Nhung Nguyen, Phuoc Tho Tran, Nghiem Anh Tuan Le, Quoc Hien Nguyen, and Duy Du Bui
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chitosan ,chitosan-copper complex ,nano sulfur ,nematodes ,Plant culture ,SB1-1110 - Abstract
Sulfur is one of the inorganic elements used by plants to develop and produce phytoalexin to resist certain diseases. This study reported a method for preparing a material for plant disease resistance. Sulfur nanoparticles (SNPs) stabilized in the chitosan-Cu2+ (CS-Cu2+) complex were synthesized by hydrolysis of Na2S2O3 in an acidic medium. The obtained SNPs/CS-Cu2+ complex consisting of 0.32% S, 4% CS, and 0.7% Cu (w/v), contained SNPs with an average size of ~28 nm as measured by transmission electron microscopy images. The X-ray diffraction pattern of the SNPs/CS-Cu2+ complex showed that SNPs had orthorhombic crystal structures. Interaction between SNPs and the CS-Cu2+ complex was also investigated by ultraviolet-visible. Results in vitro nematicidal effect of materials against Meloidogyne incognita showed that SNPs/CS-Cu2+ complex was more effective in killing second-stage juveniles (J2) nematodes and inhibiting egg hatching than that of CS and CS-Cu2+ complex. The values of LC50 in killing J2 nematodes and EC50 in inhibiting egg hatching of SNPs/CS-Cu2+ complex were 75 and 51 mg/l, respectively. These values were lower than those of CS and the CS-Cu2+ complex. The test results on the nematicidal effect against M. incognita on coffee pots showed that the SNPs/CS-Cu2+ complex was 100% effective at a concentration of 150 mg/l. Therefore, the SNPs/CS-Cu2+ complex could be considered as a biochemical material with potential for agricultural applications to control root-knot nematodes.
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- 2024
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45. Zoonotic Ancylostoma ceylanicum Infection in Coyotes from Guanacaste Conservation Area, Costa Rica, 2021
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Patsy A. Zendejas-Heredia, Joby Robleto-Quesada, Alberto Solano, Alicia Rojas, and Vito Colella
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hookworms ,zoonoses ,parasites ,enteric infections ,coyotes ,nematodes ,Medicine ,Infectious and parasitic diseases ,RC109-216 - Abstract
Ancylostoma ceylanicum is the second most common hookworm infecting humans in the Asia-Pacific region. Recent reports suggest presence of the parasite in the Americas. We report A. ceylanicum infections in coyotes from the Guanacaste Conservation Area, Costa Rica. Our findings call for active surveillance in humans and animals.
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- 2024
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46. Analysis of benzimidazole anthelmintic resistance in parasitic nematodes Haemonchus contortus using nested isothermal amplification (PCR)
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I. A. Pimenov, A. I. Varlamova, A. D. Afanasyev, and I. M. Odoevskaya
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nematodes ,haemonchus contortus ,anthelmintics ,benzimidazoles ,nested pcr ,resistance ,Biology (General) ,QH301-705.5 - Abstract
The purpose of the research is to monitor farms located in the European part of the Russian Federation to identify resistance to effects of benzimidazole anthelmintics in populations of nematodes Haemonchus contortus dwelling in the gastrointestinal tract of small cattle.Materials and methods. The studies were conducted in slaughterhouses located in the Moscow Region in 2023–2024. At the first stage, taxonomic identification of parasitic nematodes and larvae (L3) was made, and Strongylata species was determined from sheep. The study material was the abomasum with duodenum fragments and a distal rectum fragment with feces. For molecular studies, we used mature nematodes and H. contortus L3 larvae isolated from the abomasum and feces of small cattle brought to slaughterhouses in the Moscow Region from 8 regions of the European part of the Russian Federation: Moscow, Astrakhan, Oryol, Lipetsk, Tula, Bryansk regions, Stavropol and Dagestan. The studies were conducted at the premises of the Laboratory of Molecular Biology, the VNIIP – FSC VIEV. Statistical processing of the obtained data was made, and mean infection rates of parasitic nematodes (infection intensity and prevalence) were determined. Fifty-six DNA samples of nematodes H. contortus were examined using nested isothermal amplification (PCR) to identify gene alleles that determine resistance to benzimidazole drugs.Results and discussion. Molecular genetic studies of H. contortus DNA sampled from sheep brought from different Regions only detected homozygous individuals (100%) resistant to benzimidazole in the parasitic nematode population from the Oryol Region. Other regions identified only homozygous and heterozygous individuals susceptible to benzimidazole.
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- 2024
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47. Interaction between bacterial microbiota and nematode parasite communities in sheep's gastrointestinal tract.
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Mate, Laura, Alvarez, Luis Ignacio, Lloberas, Mercedes, Imperiale, Fernanda, Lanusse, Carlos Edmundo, and Liron, Juan Pedro
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GUT microbiome , *SHEEP parasites , *NEMATODES , *MANNHEIMIA haemolytica , *GASTROINTESTINAL system , *NEMATODE infections , *LIVESTOCK productivity , *GEOGRAPHIC information systems - Abstract
The economic impact of gastrointestinal (GI) nematode infections on livestock production is well documented worldwide. Increasing evidence supports the hypothesis that parasite colonization induces significant changes in the GI tract environment and, therefore, in the landscape where the microbiota and parasites occur. Understanding the interactions between bacterial and parasite populations in the digestive tract of livestock may be useful to design parasite control strategies based on microbiota modification. The aims of this work were to investigate the impact of the oxytetracycline-mediated manipulation of the gut microbial community on the composition of GI nematode populations in naturally infected sheep and to explore changes in the GI microbial communities after nematode population treatment with the anthelmintic compound monepantel. Extensive manipulation of the GI microbiota with a therapeutic dose of the long-acting oxytetracycline formulation did not induce significant changes in the GI nematode burden. The gut microbiota of treated animals returned to control levels 17 days after treatment, suggesting strong resilience of the sheep microbial community to antibiotic-mediated microbiota perturbation. A significant decrease of the bacterial Mycoplasmataceae family (Log2FC = -4, Padj = 0.001) and a marked increase of the Methanobacteriaceae family (Log2FC = 2.9, Padj = 0.018) were observed in the abomasum of sheep receiving the monepantel treatment. While a comprehensive evaluation of the interactions among GI mycoplasma, methanobacteria and nematode populations deserves further assessment, the bacteria-nematode population interactions should be included in future control programs in livestock production. Understanding how bacteria and parasites may influence each other in the GI tract environment may substantially contribute to the knowledge of the role of microbiota composition in nematode parasite establishment and the role of the parasites in the microbiota composition. [ABSTRACT FROM AUTHOR]
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- 2024
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48. High-resolution transcriptome datasets during embryogenesis of plant-parasitic nematodes.
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Wang, Xueyu, Guo, Zhiqing, Dai, Dadong, Xie, Chuanshuai, Zhao, Ziwei, Zheng, Jinshui, Sun, Ming, and Peng, Donghai
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EMBRYOLOGY ,TRANSCRIPTOMES ,SOUTHERN root-knot nematode ,SOMATIC embryogenesis ,REGULATOR genes ,ZYGOTES ,NEMATODES ,SOYBEAN cyst nematode - Abstract
Understanding the transcriptional regulatory characteristics throughout the embryogenesis of plant-parasitic nematodes is crucial for elucidating their developmental processes' uniqueness. However, a challenge arises due to the lack of suitable technical methods for synchronizing the age of plant-parasitic nematodes embryo, it is difficult to collect detailed transcriptome data at each stage of embryonic development. Here, we recorded the 11 embryonic developmental time-points of endophytic nematode Meloidogyne incognita (isolated from Wuhan, China), Heterodera glycines (isolated from Wuhan, China), and Ditylenchus destructor (isolated from Jinan, China) species, and constructed transcriptome datasets of single embryos of these three species utilizing low-input smart-seq2 technology. The datasets encompassed 11 complete embryonic development stages, including Zygote, 2-cell, 4-cell, 8-cell, 24–44 cell, 64–78 cell, Comma, 1.5-fold, 2-fold, Moving, and L1, each stage generated four to five replicates, resulting in a total of 162 high-resolution transcriptome libraries. This high-resolution cross-species dataset serves as a crucial resource for comprehending the embryonic developmental properties of plant-parasitic nematodes and for identifying functional regulatory genes during embryogenesis. [ABSTRACT FROM AUTHOR]
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- 2024
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49. Europe as a secondary distribution hub in the worldwide invasion of the potato cyst nematode Globodera rostochiensis.
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Esquibet, Magali, Mwangi, James M., Kiewnick, Sebastian, Wang, Xiaohong, Mimee, Benjamin, Handayani, Nurul Dwi, Bert, Wim, Helder, Johannes, Wainer, John, Sakata, Itaru, Garcia, Nathan, Grenier, Eric, and Montarry, Josselin
- Subjects
- *
GOLDEN nematode , *SOYBEAN cyst nematode , *ARACHNOID cysts , *MICROSATELLITE repeats , *GENETIC variation , *NEMATODES , *BAYESIAN analysis , *AMERICANS - Abstract
The potato cyst nematode Globodera rostochiensis originates from the Andean Mountain region in South America and has unintentionally been introduced to all inhabited continents. Several studies have examined the population genetic structure of this pest in various countries by using microsatellite markers. However, merging microsatellite data produced from different laboratories is challenging and can introduce uncertainty when interpreting the results. To overcome this challenge and to explore invasion routes of this pest, we have genotyped 22 G. rostochiensis populations from all continents. Within populations, the highest genetic diversity was observed in the South American populations, the European populations showed an intermediate level of genetic diversity and the remaining populations were the less diverse. This confirmed pre-existing knowledge such as a first introduction event from South America to Europe, but the less diverse populations could originate either from South America or from Europe. At the continental scale, STRUCTURE genetic clustering output indicated that North America and Asia have experienced at least two introduction events. Comparing different evolutionary scenarios, the Approximate Bayesian Computation analysis showed that Europe served as a secondary distribution centre for the invasion of G. rostochiensis into all other continents (North America, Africa, Asia and Oceania). [ABSTRACT FROM AUTHOR]
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- 2024
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50. Comparative mitochondrial genomics in Nematoda reveal astonishing variation in compositional biases and substitution rates indicative of multi-level selection.
- Author
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Gendron, Eli M. S., Qing, Xue, Sevigny, Joseph L., Li, Hongmei, Liu, Zhiyin, Blaxter, Mark, Powers, Thomas O., Thomas, W. Kelly, and Porazinska, Dorota L.
- Subjects
- *
COMPARATIVE genomics , *NEMATODES , *GENOME size , *GENOMES , *PHYLOGENY , *ECOSYSTEMS - Abstract
Background: Nematodes are the most abundant and diverse metazoans on Earth, and are known to significantly affect ecosystem functioning. A better understanding of their biology and ecology, including potential adaptations to diverse habitats and lifestyles, is key to understanding their response to global change scenarios. Mitochondrial genomes offer high species level characterization, low cost of sequencing, and an ease of data handling that can provide insights into nematode evolutionary pressures. Results: Generally, nematode mitochondrial genomes exhibited similar structural characteristics (e.g., gene size and GC content), but displayed remarkable variability around these general patterns. Compositional strand biases showed strong codon position specific G skews and relationships with nematode life traits (especially parasitic feeding habits) equal to or greater than with predicted phylogeny. On average, nematode mitochondrial genomes showed low non-synonymous substitution rates, but also high clade specific deviations from these means. Despite the presence of significant mutational saturation, non-synonymous (dN) and synonymous (dS) substitution rates could still be significantly explained by feeding habit and/or habitat. Low ratios of dN:dS rates, particularly associated with the parasitic lifestyles, suggested the presence of strong purifying selection. Conclusions: Nematode mitochondrial genomes demonstrated a capacity to accumulate diversity in composition, structure, and content while still maintaining functional genes. Moreover, they demonstrated a capacity for rapid evolutionary change pointing to a potential interaction between multi-level selection pressures and rapid evolution. In conclusion, this study helps establish a background for our understanding of the potential evolutionary pressures shaping nematode mitochondrial genomes, while outlining likely routes of future inquiry. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
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