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1. Tumour evolution and microenvironment interactions in 2D and 3D space

Author

Mo, Chia-Kuei, Liu, Jingxian, Chen, Siqi, Storrs, Erik, Targino da Costa, Andre Luiz N., Houston, Andrew, Wendl, Michael C., Jayasinghe, Reyka G., Iglesia, Michael D., Ma, Cong, Herndon, John M., Southard-Smith, Austin N., Liu, Xinhao, Mudd, Jacqueline, Karpova, Alla, Shinkle, Andrew, Goedegebuure, S. Peter, Abdelzaher, Abdurrahman Taha Mousa Ali, Bo, Peng, Fulghum, Lauren, Livingston, Samantha, Balaban, Metin, Hill, Angela, Ippolito, Joseph E., Thorsson, Vesteinn, Held, Jason M., Hagemann, Ian S., Kim, Eric H., Bayguinov, Peter O., Kim, Albert H., Mullen, Mary M., Shoghi, Kooresh I., Ju, Tao, Reimers, Melissa A., Weimholt, Cody, Kang, Liang-I, Puram, Sidharth V., Veis, Deborah J., Pachynski, Russell, Fuh, Katherine C., Chheda, Milan G., Gillanders, William E., Fields, Ryan C., Raphael, Benjamin J., Chen, Feng, and Ding, Li

Published
2024
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3. Genetic characterization of primary and metastatic high-grade serous ovarian cancer tumors reveals distinct features associated with survival.

Author

Kotnik, Emilee N, Mullen, Mary M, Spies, Nicholas C, Li, Tiandao, Inkman, Matthew, Zhang, Jin, Martins-Rodrigues, Fernanda, Hagemann, Ian S, McCourt, Carolyn K, Thaker, Premal H, Hagemann, Andrea R, Powell, Matthew A, Mutch, David G, Khabele, Dineo, Longmore, Gregory D, Mardis, Elaine R, Maher, Christopher A, Miller, Christopher A, and Fuh, Katherine C

Subjects
Humans, Ovarian Neoplasms, Prognosis, Female, DNA Copy Number Variations, Rare Diseases, Cancer, Genetics, Human Genome, Prevention, Biotechnology, Clinical Research, Ovarian Cancer, Aetiology, 2.1 Biological and endogenous factors, Good Health and Well Being
Abstract

High-grade serous ovarian cancer (HGSC) is the most lethal histotype of ovarian cancer and the majority of cases present with metastasis and late-stage disease. Over the last few decades, the overall survival for patients has not significantly improved, and there are limited targeted treatment options. We aimed to better characterize the distinctions between primary and metastatic tumors based on short- or long-term survival. We characterized 39 matched primary and metastatic tumors by whole exome and RNA sequencing. Of these, 23 were short-term (ST) survivors (overall survival (OS)  5 years). We compared somatic mutations, copy number alterations, mutational burden, differential gene expression, immune cell infiltration, and gene fusion predictions between the primary and metastatic tumors and between ST and LT survivor cohorts. There were few differences in RNA expression between paired primary and metastatic tumors, but significant differences between the transcriptomes of LT and ST survivors in both their primary and metastatic tumors. These findings will improve the understanding of the genetic variation in HGSC that exist between patients with different prognoses and better inform treatments by identifying new targets for drug development.

Published
2023

6. Placental Findings in Pregnancies Complicated by Maternal Cardiovascular Disease

Author

Aggarwal, Shivani R., Aldweib, Nael, Alshawabkeh, Laith, Barker, Nancy, Buber, Yonatan, Carabuena, Jean Marie, Carazo, Matthew, Dollar, Emily, Drakeley, Sheila, Duarte, Valeria, Easter, Sarah Rae, Assenza, Gabriele Egidy, Graf, Julia, Gurvitz, Michelle, Halpern, Daniel, Harmon, Amy, Hickey, Kelsey, Hynes, Jenna, Joyce, Caitlyn, Knapp, William P., Landzberg, Michael, Morgan, Roisin, Mullen, Mary, Opotowsky, Alexander, Partington, Sara, Pearson, Dorothy, Rajpal, Saraubh, Rodriguez-Monserrate, Carla P., Rouse, Carrie, Shafer, Keri, Singh, Michael N., Stefanescu Schmidt, Ada C., Tsao, Allison L., Upadhyay, Shailendra, Wu, Fred M., Quade, Bradley J., Carreon, Chrystalle Katte, Schefter, Zoë J., Moses, Abigail, Lachtrupp, Cara L., Markley, John C., Gauvreau, Kimberlee, Valente, Anne Marie, and Economy, Katherine E.

Published
2022
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11. Abstract A075: Stromal cell DDR2 promotes ovarian cancer metastasis

Author

Schab, Angela, primary, Greenwade, Molly, additional, Stock, Elizabeth, additional, Lomonosova, Elena, additional, Cho, Kevin, additional, Grither, Whitney, additional, Noia, Hollie, additional, Wilke, Daniel, additional, Ibitoye, Zainab, additional, Mullen, Mary, additional, Hagemann, Andrea, additional, Hagemann, Ian, additional, Thaker, Premal, additional, Kuroki, Lindsay, additional, McCourt, Carolyn, additional, Khabele, Dineo, additional, Powell, Matthew, additional, Mutch, David, additional, Zhao, Peinan, additional, Shriver, Leah, additional, Patti, Gary, additional, Longmore, Gregory, additional, and Fuh, Katherine, additional

Published
2024
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12. Abstract B094: A combined RAD51 and phosphorylated replication protein assay predict response to platinum chemotherapy in high-grade serous ovarian cancer

Author

Compadre, Amanda J., primary, Sandoval, Carmen, additional, Graham, Olivia, additional, Rodriguez, Jeimmy, additional, Kuroki, Lindsay M., additional, McCourt, Carolyn K., additional, Hagemann, Andrea, additional, Thaker, Premal H., additional, Massad, L. Stewart, additional, Powell, Matthew A., additional, Mutch, David G., additional, Hagemann, Ian, additional, Fuh, Katherine, additional, Sun, Lulu, additional, Zhao, Peinan, additional, Khabele, Dineo, additional, Verma, Priyanka, additional, Lomonosova, Elena, additional, and Mullen, Mary M., additional

Published
2024
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14. Actigraphy methodology in the Kids Mod PAH trial: Physical activity as a functional endpoint in pediatric clinical trials

Author

Avitabile, Catherine M., primary, Krishnan, Usha S., additional, Yung, Delphine, additional, Handler, Stephanie S., additional, Varghese, Nidhy, additional, Bates, Angela, additional, Fineman, Jeff, additional, Sullivan, Rachel, additional, Friere, Grace, additional, Austin, Eric, additional, Mullen, Mary P., additional, Pereira, Carol, additional, Christensen, Eric J., additional, Yenokyan, Gayane, additional, Collaco, Joseph M., additional, Abman, Steven H., additional, Romer, Lew, additional, Dunbar Ivy, D., additional, and Rosenzweig, Erika B., additional

Published
2024
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16. Stromal DDR2 Promotes Ovarian Cancer Metastasis through Regulation of Metabolism and Secretion of Extracellular Matrix Proteins

Author

Schab, Angela M., primary, Greenwade, Molly M., additional, Stock, Elizabeth, additional, Lomonosova, Elena, additional, Cho, Kevin, additional, Grither, Whitney R., additional, Noia, Hollie, additional, Wilke, Daniel, additional, Mullen, Mary M., additional, Hagemann, Andrea R., additional, Hagemann, Ian S., additional, Thaker, Premal H., additional, Kuroki, Lindsay M., additional, McCourt, Carolyn K., additional, Khabele, Dineo, additional, Powell, Matthew A., additional, Mutch, David G., additional, Zhao, Peinan, additional, Shriver, Leah P., additional, Patti, Gary J., additional, Longmore, Gregory D., additional, and Fuh, Katherine C., additional

Published
2023
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21. Pregnancies Complicated by Diabetes and Effect on Fetal Growth in Patients With Congenital Heart Disease

Author

Lee, Jennifer, primary, Duncan, Madeline E., additional, Economy, Katherine E., additional, Rosenberg, Emily A., additional, Gauvreau, Kimberlee, additional, Joyce, Caitlyn, additional, Lassey, Sarah C., additional, Valente, Anne Marie, additional, Aggarwal, Shivani R., additional, Aldweib, Nael, additional, Alshawabkeh, Laith, additional, Barker, Nancy, additional, Buber, Yonatan, additional, Carabuena, Jean Marie, additional, Carazo, Matthew, additional, Drakeley, Sheila, additional, Duarte, Valeria, additional, Easter, Sarah Rae, additional, Assenza, Gabriele Egidy, additional, Graf, Julia, additional, Gurvitz, Michelle, additional, Halpern, Daniel, additional, Harmon, Amy, additional, Hickey, Kelsey, additional, Hynes, Jenna, additional, Knapp, William P., additional, Landzberg, Michael, additional, Marenco, Anais, additional, Mullen, Mary, additional, Opotowsky, Alexander, additional, Partington, Sara, additional, Rajpal, Saraubh, additional, Rodriguez-Monserrate, Carla P., additional, Rouse, Carrie, additional, Schefter, Zoë J., additional, Shafer, Keri, additional, Singh, Michael N., additional, Stefanescu Schmidt, Ada C., additional, Tsao, Allison L., additional, Upadhyay, Shailendra, additional, and Wu, Fred, additional

Published
2023
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22. RAD51 Foci as a Biomarker Predictive of Platinum Chemotherapy Response in Ovarian Cancer

Author

Compadre, Amanda J., primary, van Biljon, Lillian N., additional, Valentine, Mark C., additional, Llop-Guevara, Alba, additional, Graham, Emily, additional, Fashemi, Bisiayo, additional, Herencia-Ropero, Andrea, additional, Kotnik, Emilee N., additional, Cooper, Isaac, additional, Harrington, Shariska P., additional, Kuroki, Lindsay M., additional, McCourt, Carolyn K., additional, Hagemann, Andrea R., additional, Thaker, Premal H., additional, Mutch, David G., additional, Powell, Matthew A., additional, Sun, Lulu, additional, Mosammaparast, Nima, additional, Serra, Violeta, additional, Zhao, Peinan, additional, Lomonosova, Elena, additional, Khabele, Dineo, additional, and Mullen, Mary M., additional

Published
2023
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24. Should we abandon minimally invasive surgery for cervical cancer?: Recent data infer that, as a specialty, we should consider an open surgical approach

Author

Mullen, Mary M. and Mutch, David G.

Subjects
Hospital patients, Women's health, Periodicals, Morbidity, Cervical cancer, Postoperative complications, Hysterectomy, Health, American Society of Clinical Oncology
Abstract

A minimally invasive approach for gynecologic surgery increasingly has become the surgical modality of choice (vs open surgery) due to decreased perioperative and postoperative morbidity for many gynecologic cancers. (1,3) [...]

Published
2019

26. Pregnancies Complicated by Diabetes and Effect on Fetal Growth in Patients With Congenital Heart Disease

Author

Aggarwal, Shivani R., Aldweib, Nael, Alshawabkeh, Laith, Barker, Nancy, Buber, Yonatan, Carabuena, Jean Marie, Carazo, Matthew, Drakeley, Sheila, Duarte, Valeria, Easter, Sarah Rae, Assenza, Gabriele Egidy, Graf, Julia, Gurvitz, Michelle, Halpern, Daniel, Harmon, Amy, Hickey, Kelsey, Hynes, Jenna, Knapp, William P., Landzberg, Michael, Marenco, Anais, Mullen, Mary, Opotowsky, Alexander, Partington, Sara, Rajpal, Saraubh, Rodriguez-Monserrate, Carla P., Rouse, Carrie, Schefter, Zoë J., Shafer, Keri, Singh, Michael N., Stefanescu Schmidt, Ada C., Tsao, Allison L., Upadhyay, Shailendra, Wu, Fred, Lee, Jennifer, Duncan, Madeline E., Economy, Katherine E., Rosenberg, Emily A., Gauvreau, Kimberlee, Joyce, Caitlyn, Lassey, Sarah C., and Valente, Anne Marie

Published
2023
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28. 26 Pharmacologic inhibition of discoidin domain receptor 2 (DDR2) sensitizes homologous recombination proficient ovarian cancer models to treatment with olaparib

Author

Stock, Elizabeth, primary, Lomonosova, Elena C., additional, Noia, Hollie C., additional, Bruce, Shaina, additional, Grither, Whitney C., additional, Mullen, Mary, additional, Khabele, Dineo, additional, Kuroki, Linday, additional, Hagemann, Andrea, additional, McCourt, Carolyn C., additional, Thaker, Premal, additional, Mutch, David, additional, Powell, Matthew, additional, Patti, Gary, additional, Longmore, Gregory, additional, and Fuh, Katherine, additional

Published
2022
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29. Community access to primary care is an important geographic disparity among ovarian cancer patients undergoing cytoreductive surgery

Author

Zamorano, Abigail S., primary, Mazul, Angela L., additional, Marx, Christine, additional, Mullen, Mary M., additional, Greenwade, Molly, additional, Stewart Massad, L., additional, McCourt, Carolyn K., additional, Hagemann, Andrea R., additional, Thaker, Premal H., additional, Fuh, Katherine C., additional, Powell, Matthew A., additional, Mutch, David G., additional, Khabele, Dineo, additional, and Kuroki, Lindsay M., additional

Published
2022
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30. Kids Mod PAH trial: A multicenter trial comparing mono-versus duo-therapy for initial treatment of pediatric pulmonary hypertension.

Author

Collaco, Joseph M., Abman, Steven H., Austin, Eric D., Avitabile, Catherine M., Bates, Angela, Fineman, Jeffrey R., Freire, Grace A., Handler, Stephanie S., Ivy, Dunbar D., Krishnan, Usha S., Mullen, Mary P., Varghese, Nidhy P., Yung, Delphine, Nies, Melanie K., Everett, Allen D., Zimmerman, Kanecia O., Simmons, William, Chakraborty, Hrishikesh, Yenokyan, Gayane, and Newell-Sturdivant, Allison

Subjects
CLINICAL trials, PEDIATRIC therapy, PULMONARY hypertension, PULMONARY arterial hypertension, DRUG therapy, JUVENILE diseases
Abstract

Pulmonary hypertension (PH) is a significant health problem that contributes to high morbidity and mortality in diverse cardiac, pulmonary, and systemic diseases in children. Evidence-based advances in PH care have been challenged by a paucity of quality endpoints for assessing clinical course and the lack of robust clinical trial data to guide pharmacologic therapies in children. While the landmark adult AMBITION trial demonstrated the benefit of up-front combination PH therapy with ambrisentan and tadalafil, it remains unknown whether upfront combination therapy leads to more rapid and sustained clinical benefits in children with various categories of PH. In this article, we describe the inception of the Kids Mod PAH Trial, a multicenter Phase III trial, to address whether upfront combination therapy (sildenafil and bosentan vs. sildenafil alone) improves PH outcomes in children, recognizing that marked differences between the etiology and therapeutic response between adults and children exist. The primary endpoint of this study is WHO functional class (FC) 12 months after initiation of study drug therapy. In addition to the primary outcome, secondary endpoints are being assessed, including a composite measure of time to clinical worsening, WHO FC at 24 months, echocardiographic assessment of PH and quantitative assessment of right ventricular function, 6-min walk distance, and NT-proBNP levels. Exploratory endpoints include selected biomarkers, actigraphy, and assessments of quality of life. This study is designed to pave the way for additional clinical trials by establishing a robust infrastructure through the development of a PPHNet Clinical Trials Network. [ABSTRACT FROM AUTHOR]

Published
2023
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32. Abstract 2429: Tumor and stromal AXL expression regulate ovarian cancer metastasis

Author

Mullen, Mary Margaret, primary, van Biljon, Lillian N., additional, Quinn, Jeanne, additional, Greenwade, Molly, additional, Opara, Gregory, additional, Noia, Hollie, additional, Hagemann, Ian S., additional, Hagemann, Andrea R., additional, Kuroki, Lindsay M., additional, McCourt, Carolyn K., additional, Thaker, Premal H., additional, Powell, Matthew A., additional, Mutch, David G., additional, Khabele, Dineo, additional, and Fuh, Katherine C., additional

Published
2022
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33. GAS6-AXL Inhibition by AVB-500 Overcomes Resistance to Paclitaxel in Endometrial Cancer by Decreasing Tumor Cell Glycolysis

Author

Bruce, Shaina F., primary, Cho, Kevin, additional, Noia, Hollie, additional, Lomonosova, Elena, additional, Stock, Elizabeth C., additional, Oplt, Alyssa, additional, Blachut, Barbara, additional, Mullen, Mary M., additional, Kuroki, Lindsay M., additional, Hagemann, Andrea R., additional, McCourt, Carolyn K., additional, Thaker, Premal H., additional, Khabele, Dineo, additional, Powell, Matthew A., additional, Mutch, David G., additional, Shriver, Leah P., additional, Patti, Gary J., additional, and Fuh, Katherine C., additional

Published
2022
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34. Placental Findings in Pregnancies Complicated by Maternal Cardiovascular Disease

Author

Wu, Fred M., primary, Quade, Bradley J., additional, Carreon, Chrystalle Katte, additional, Schefter, Zoë J., additional, Moses, Abigail, additional, Lachtrupp, Cara L., additional, Markley, John C., additional, Gauvreau, Kimberlee, additional, Valente, Anne Marie, additional, Economy, Katherine E., additional, Aggarwal, Shivani R., additional, Aldweib, Nael, additional, Alshawabkeh, Laith, additional, Barker, Nancy, additional, Buber, Yonatan, additional, Carabuena, Jean Marie, additional, Carazo, Matthew, additional, Dollar, Emily, additional, Drakeley, Sheila, additional, Duarte, Valeria, additional, Easter, Sarah Rae, additional, Assenza, Gabriele Egidy, additional, Graf, Julia, additional, Gurvitz, Michelle, additional, Halpern, Daniel, additional, Harmon, Amy, additional, Hickey, Kelsey, additional, Hynes, Jenna, additional, Joyce, Caitlyn, additional, Knapp, William P., additional, Landzberg, Michael, additional, Morgan, Roisin, additional, Mullen, Mary, additional, Opotowsky, Alexander, additional, Partington, Sara, additional, Pearson, Dorothy, additional, Rajpal, Saraubh, additional, Rodriguez-Monserrate, Carla P., additional, Rouse, Carrie, additional, Shafer, Keri, additional, Singh, Michael N., additional, Stefanescu Schmidt, Ada C., additional, Tsao, Allison L., additional, and Upadhyay, Shailendra, additional

Published
2022
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35. Impact of the COVID-19 pandemic on referral to and delivery of gynecologic oncology care

Author

Bruce, Shaina F., primary, Huysman, Bridget, additional, Bharucha, Jinai, additional, Massad, L. Stewart, additional, Mullen, Mary M., additional, Hagemann, Andrea R., additional, Fuh, Katherine C., additional, McCourt, Carolyn K., additional, Thaker, Premal H., additional, Khabele, Dineo, additional, Powell, Matthew A., additional, Mutch, David G., additional, and Kuroki, Lindsay M., additional

Published
2022
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36. GAS6/AXL Inhibition Enhances Ovarian Cancer Sensitivity to Chemotherapy and PARP Inhibition through Increased DNA Damage and Enhanced Replication Stress

Author

Mullen, Mary M., primary, Lomonosova, Elena, additional, Toboni, Michael D., additional, Oplt, Alyssa, additional, Cybulla, Emily, additional, Blachut, Barbara, additional, Zhao, Peinan, additional, Noia, Hollie, additional, Wilke, Daniel, additional, Rankin, Erinn B., additional, Kuroki, Lindsay M., additional, Hagemann, Andrea R., additional, Hagemann, Ian S., additional, McCourt, Carolyn K., additional, Thaker, Premal H., additional, Mutch, David G., additional, Powell, Matthew A., additional, Mosammaparast, Nima, additional, Vindigni, Alessandro, additional, and Fuh, Katherine C., additional

Published
2022
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37. A rapid FT-IR-based method for monitoring detergent removal from biological samples

Author

Strug, lvona, Gutierrez, Sara, Cappione, Amedeo, Jimenez, Mayra, Mullen, Mary Jane, and Nadler, Timothy

Subjects
Mass spectrometry -- Methods -- Analysis, Proteins -- Methods -- Analysis, Chemistry, Engineering and manufacturing industries, Physics, Science and technology
Abstract

In life science research, detergents are primarily used in sample preparation to liberate cellular components through membrane disruption and to solubilize lipid-associated proteins. However, detergents can interfere with applications such [...]

Published
2014

40. Inhibition of AXL and VEGF-A Has Improved Therapeutic Efficacy in Uterine Serous Cancer

Author

Toboni, Michael D., primary, Lomonosova, Elena, additional, Bruce, Shaina F., additional, Tankou, Jo’an I., additional, Mullen, Mary M., additional, Schab, Angela, additional, Oplt, Alyssa, additional, Noia, Hollie, additional, Wilke, Danny, additional, Kuroki, Lindsay M., additional, Hagemann, Andrea R., additional, McCourt, Carolyn K., additional, Thaker, Premal H., additional, Powell, Matthew A., additional, Khabele, Dineo, additional, Mutch, David G., additional, and Fuh, Katherine C., additional

Published
2021
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43. A rapid FT-IR-based method for monitoring detergent removal from biological sample

Author

Strug, Ivona, Gutierrez, Sara, Cappione, Amedeo III, Jimenez, Mayra, Mullen, Mary Jane, and Nadler, Timothy

Subjects
Mass spectrometry -- Methods -- Analysis, Proteins -- Methods -- Analysis, Chemistry, Engineering and manufacturing industries, Physics, Science and technology
Abstract

In life science research, detergents are primarily used in sample preparation to liberate cellular components through membrane disruption and to solubilize lipid-associated proteins. However, detergents can interfere with applications such [...]

Published
2013

44. Pulmonary-to-Systemic Arterial Shunt to Treat Children With Severe Pulmonary Hypertension

Author

Grady, R. Mark, primary, Canter, Matthew W., additional, Wan, Fei, additional, Shmalts, Anton A., additional, Coleman, Ryan D., additional, Beghetti, Maurice, additional, Berger, Rolf M.F., additional, del Cerro Marin, Maria J., additional, Fletcher, Scott E., additional, Hirsch, Russel, additional, Humpl, Tilman, additional, Ivy, D. Dunbar, additional, Kirkpatrick, Edward C., additional, Kulik, Thomas J., additional, Levy, Marilyne, additional, Moledina, Shahin, additional, Yung, Delphine, additional, Eghtesady, Pirooz, additional, Bonnet, Damien, additional, Magness, S. Melissa, additional, Anderson, Venus R., additional, Mullen, Mary M., additional, Gorbachevsky, Sergey V., additional, Zaets, Sergey B., additional, Haarman, Meindina G., additional, and Szezepanski, Isabelle, additional

Published
2021
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45. A homozygous stop-gain variant in ARHGAP42 is associated with childhood interstitial lung disease, systemic hypertension, and immunological findings

Author

Li, Qifei, primary, Dibus, Michal, additional, Casey, Alicia, additional, Yee, Christina S. K., additional, Vargas, Sara O., additional, Luo, Shiyu, additional, Rosen, Samantha M., additional, Madden, Jill A., additional, Genetti, Casie A., additional, Brabek, Jan, additional, Brownstein, Catherine A., additional, Kazerounian, Shideh, additional, Raby, Benjamin A., additional, Schmitz-Abe, Klaus, additional, Kennedy, John C., additional, Fishman, Martha P., additional, Mullen, Mary P., additional, Taylor, Joan M., additional, Rosel, Daniel, additional, and Agrawal, Pankaj B., additional

Published
2021
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46. Characterisation of paediatric pulmonary hypertensive vascular disease from the PPHNet Registry

Author

Abman, Steven H., primary, Mullen, Mary P., additional, Sleeper, Lynn A., additional, Austin, Eric D., additional, Rosenzweig, Erika B., additional, Kinsella, John P., additional, Ivy, Dunbar, additional, Hopper, Rachel K., additional, Raj, J. Usha, additional, Fineman, Jeffrey, additional, Keller, Roberta L., additional, Bates, Angela, additional, Krishnan, Usha S., additional, Avitabile, Catherine M., additional, Davidson, Alexander, additional, Natter, Marc D., additional, and Mandl, Kenneth D., additional

Published
2021
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47. The role of endometrial sampling for surveillance of recurrence in postmenopausal patients with medically inoperable stage I endometrial cancer

Author

Carey-Love, Angelina, primary, Mullen, Mary M., additional, Zamorano, Abigail, additional, Markovina, Stephanie, additional, Hagemann, Andrea R., additional, Fuh, Katherine C., additional, Thaker, Premal H., additional, Mutch, David G., additional, Powell, Matthew A., additional, and Kuroki, Lindsay M., additional

Published
2021
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