44 results on '"Mengying Jiang"'
Search Results
2. Effectiveness of spatial measurement model based on SDM-STIRPAT in measuring carbon emissions from transportation facilities
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Guozhi Li, Yidan Yuan, Xunuo Chen, Dandan Fu, and Mengying Jiang
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SDM ,STIRPAT ,Transportation facilities ,Energy consumption ,Carbon emissions ,Relativity ,Energy industries. Energy policy. Fuel trade ,HD9502-9502.5 - Abstract
Abstract To gain a deeper understanding of the carbon emission mechanism from transportation facilities, all system elements affecting carbon emissions from regional transportation facilities are identified and analyzed according to panel data from 30 regions in China. A spatial econometric model for carbon emissions from transportation facilities is constructed using the Spatial Dolbin model from 2004 to 2022 as the research period. From the results, the carbon dioxide emissions from transportation facilities added from 318 million tons in 2004 to 752 million tons in 2022, with an average annual growth rate of 4.9%. The global spatial auto-correlation coefficient was significant at the 5%, with an obvious spatial correlation between carbon dioxide emissions within a geographical range. In addition, through stability testing, the model showed high stability in both spatial lag testing and spatial error testing, demonstrating strong ability to interpret data. The research shows that the carbon emission is affected by independent variables, including population, economy, technology, and transportation, and exhibit significant spatial distribution characteristics in different regions and years, providing a basis for policy formulation and carbon emission management.
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- 2024
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3. Supply chain carbon abatement under different power structures: impact of consumers’ low-carbon preference and carbon tax policy
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Guozhi Li, Mengying Jiang, Yidan Yuan, Xunuo Chen, and Dandan Fu
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supply chain carbon abatement ,power structure ,consumers’ low-carbon preference ,carbon tax policy ,cost allocation contract ,Environmental sciences ,GE1-350 - Abstract
Supply chain carbon abatement is an important way to promote low-carbon transformation of the social economy and address global climate change. This paper analyzes the issue of supply chain carbon abatement under different power structures, as well as the effect of consumers’ low-carbon preference and carbon tax rate on the optimal decisions. This paper constructs five different models, namely ML-NO model, ML-CS model, RL-NO model, RL-CS model and VI model. The research finds that VI model is the most ideal model for promoting supply chain carbon abatement. The optimal abatement efforts, market demand, and total profits in the VI model are all the largest among the five models. Whether the supply chain leader is the manufacturer or the retailer, cost sharing contract can enhance optimal abatement efforts, market demand, and profits of both parties. In any model, the leader in Supply chain earns higher profits than the follower. When consumers’ low-carbon preference increases, the optimal abatement efforts, market demand, and profits of both parties will all increase, and the growth rate is gradually accelerating. For the manufacturer with high carbon emissions, when the carbon tax rate increases, the optimal abatement efforts first increase and then decrease. For the manufacturer with low carbon emissions, when the carbon tax rate increases, the optimal abatement efforts will also increase.
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- 2024
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4. The nexus of poverty energy in China's industrial productive efficiency and energy transition in digital economy
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Guozhi Li, Mengying Jiang, Yidan Yuan, Xunuo Chen, and Dandan Fu
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Energy transition ,Digitilization ,Productive efficiency ,Cleaner energy sources ,Science (General) ,Q1-390 ,Social sciences (General) ,H1-99 - Abstract
This research explores the relationship between energy poverty, industrial efficiency, and the energy transition within China's digital economy from 2010 to 2022, spanning 30 provinces. Addressing the significant issue of energy poverty, where many lack access to affordable and reliable energy, the study seeks to understand its impact on industrial productivity and the broader imperative of energy transition in the face of rapid digitalization in China. Using panel data analysis, the research examines how energy poverty affects industrial production efficiency and evaluates its influence on China's ability to shift to cleaner energy sources within the digital economic framework. Findings highlight a complex interplay between energy poverty, industrial efficiency, and energy transition. It is revealed that energy poverty significantly impedes industrial productivity, with notable differences across provinces. Furthermore, the study finds a positive link between industrial efficiency and the speed of energy transition, indicating that enhancing industrial efficiency can aid in a smoother shift to cleaner energy sources. The digital economy is identified as a crucial factor in this process, providing innovative solutions to reduce energy poverty, improve productive efficiency, and accelerate the energy transition. The study emphasizes the importance of integrated strategies to tackle energy poverty, enhance industrial efficiency, and support the energy transition, particularly through the utilization of digital economy tools.
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- 2024
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5. Methylation of BRD4 by PRMT1 regulates BRD4 phosphorylation and promotes ovarian cancer invasion
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Yi Liu, Hejing Liu, Miaomiao Ye, Mengying Jiang, Xin Chen, Gendi Song, Huihui Ji, Zhi-wei Wang, and Xueqiong Zhu
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Cytology ,QH573-671 - Abstract
Abstract Bromodomain-containing protein 4 (BRD4), the major component of bromodomain and extra-terminal domain (BET) protein family, has important functions in early embryonic development and cancer development. However, the posttranslational modification of BRD4 is not well understood. Multiple approaches were used to explore the mechanism of PRMT1-mediated BRD4 methylation and to determine the biological functions of BRD4 and PRMT1 in ovarian cancer. Here we report that BRD4 is asymmetrically methylated at R179/181/183 by PRMT1, which is antagonized by the Jumonji-family demethylase, JMJD6. PRMT1 is overexpressed in ovarian cancer tissue and is a potential marker for poor prognosis in ovarian cancer patients. Silencing of PRMT1 inhibited ovarian cancer proliferation, migration, and invasion in vivo and in vitro. PRMT1-mediated BRD4 methylation was found to promote BRD4 phosphorylation. Compared to BRD4 wild-type (WT) cells, BRD4 R179/181/183K mutant-expressing cells showed reduced ovarian cancer metastasis. BRD4 arginine methylation is also associated with TGF-β signaling. Our results indicate that arginine methylation of BRD4 by PRMT1 is involved in ovarian cancer tumorigenesis. Targeting PRMT1-mediated arginine methylation may provide a novel diagnostic target and an effective therapeutic strategy for ovarian cancer treatment.
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- 2023
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6. A Non-Transferable Trade Scheme of Green Power Based on Blockchain
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Yang Li, Mengying Jiang, Mei Yu, Shouzhi Xu, Xiaojun Liu, Shirui Zhang, Jia Zhu, Shurui Peng, and Zhongming Gu
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blockchain ,non-transferability ,green certificate ,traceability ,Technology - Abstract
Power consumers can obtain authoritative green environmental value certification through green electricity trading, which plays an important role in improving the production competitiveness of enterprises, especially for international product trade affairs. However, the credibility of green electricity transactions faces serious challenges in the enterprise green authentication affairs, especially the user’s identity authentication, the traceability of green electricity transactions, and the standardization of green electricity transactions. Aiming to solve the certification and traceability problem of tradable green certificates, this paper proposes an integrated green certificate trading protocol, which solves its double-trading problem and helps to improve the credibility of renewable energy use. The main contribution is providing a solution based on the consortium blockchain technology to solve the main challenges mentioned above. The main solved scheme designs a series of protocols, which includes a purchase protocol, payment protocol, and non-transferable protocol. The whole process ensures the credibility, traceability, and non-transferability of green certificate trading. Multiple verification measures are adopted to address security and privacy challenges in green certificate management. Through security analysis, the protocol effectively defends against attacks such as double payments, transaction rollback, and transaction replays while ensuring users’ privacy.
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- 2024
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7. A hydrophobic Cu/Cu2O sheet catalyst for selective electroreduction of CO to ethanol
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Guifeng Ma, Olga A. Syzgantseva, Yan Huang, Dragos Stoian, Jie Zhang, Shuliang Yang, Wen Luo, Mengying Jiang, Shumu Li, Chunjun Chen, Maria A. Syzgantseva, Sen Yan, Ningyu Chen, Li Peng, Jun Li, and Buxing Han
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Science - Abstract
Tuning electrocatalytic reduction of carbon monoxide to achieve valuable ethanol product with high performance is interesting yet challenging. Here, the authors design a hydrophobic Cu/Cu2O sheet catalyst showing a FE of 68.8% and partial current density of 111 mA cm−2 for CO reduction to ethanol.
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- 2023
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8. Association of Vitamin D Anabolism-Related Gene Polymorphisms and Susceptibility to Uterine Leiomyomas
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Shangdan Xie, Mengying Jiang, Hejing Liu, Fang Xue, Xin Chen, and Xueqiong Zhu
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vitamin D ,uterine leiomyomas ,single nucleotide polymorphisms ,Dhcr7 ,NADSYN1 ,Genetics ,QH426-470 - Abstract
Background: Uterine leiomyomas (ULs) is the most common gynecological benign tumor in women. Our previous study showed that the phenomenon of vitamin D deficiency existed in patients with ULs. However, the association of vitamin D anabolism-related gene polymorphisms and susceptibility to ULs was unclear.Methods: Vitamin D anabolism-related gene polymorphisms in 110 patients with ULs and 110 healthy controls were detected by sequencing and the differences of the 92 SNPs were analyzed in the two groups via chi-square test. To verify the association between the significantly different SNPs and the risk of ULs, the SNPs were genotyped in another 340 patients and 340 healthy controls. Additionally, an unconditional logistic regression model was conducted to calculate the odds ratio (OR) of ULs occurrence and the 95% confidence interval (CI), adjusting for age and BMI.Findings: In sequencing samples, there were differences in DHCR7 rs1044482 C > T (p = 0.008) and NADSYN1 rs2276360 G > C (p = 0.025) between patients with ULs and healthy controls. DHCR7 rs1044482 was related to the susceptibility to ULs in validation samples (heterogeneous: adjusted OR = 1.967, p = 0.002; homogenous: adjusted OR = 2.494, p = 0.002; additive: adjusted OR = 1.485, p < 0.041; and dominant: adjusted OR = 2.084, p < 0.001). Stratified analysis further showed that the DHCR7 rs1044482 polymorphisms were associated with ULs risks in women over 40 and with 18.5–25.0 BMI. In contrast to the wild-type CG haplotype vectors, individuals with TC haplotypes had a higher risk of developing ULs.Interpretation: The vitamin D anabolism-related gene DHCR7 rs1044482 C > T polymorphism was a risk factor of ULs, especially in patients over 40 with 18.5–25.0 BMI, while the relationship between NADSYN1 rs2276360 and ULs risk was not clear.
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- 2022
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9. Extreme Learning Machine With Enhanced Composite Feature for Spectral-Spatial Hyperspectral Image Classification
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Mengying Jiang, Faxian Cao, and Yunmeng Lu
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Extreme learning machine (ELM) ,hyperspectral images (HSIs) ,enhanced composite feature (CF) ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
The applications of extreme learning machine (ELM) to the hyperspectral-image (HSI) classification have attracted a great deal of research attention because of its excellent performance and fast learning speed. However, conventional ELM is unable to achieve satisfactory accuracy since it only exploits the spectral information to conduct the HSI classification. To address the above issues, we propose a novel classification algorithm based on both spectral and multiscale spatial information, referred to as ELM with enhanced composite feature (ELM-ECF). To be specific, we adopt the original ELM, exploit a multiscale spatial weighted-mean-filtering-based approach to extract multiple spatial information, and use the majority vote method to select the final classification result. The proposed ELM-ECF significantly improves the classification accuracy of the original ELM. Experimental results on three public HSIs (i.e., Indian Pines data set, Pavia University data set, and Salinas data set) illustrate that the proposed ELM-ECF outperforms a variety of the state-of-the-art HSI classification counterparts in terms of classification accuracy.
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- 2018
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10. Knowledge Mapping Analysis of Transnational Agricultural Land Investment Research
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Jing Han, Mengying Jiang, Xupeng Zhang, and Xinhai Lu
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transnational agricultural land investment ,foreign investment in agriculture ,overseas farmland investment ,land grab ,large-scale land acquisitions ,Agriculture - Abstract
With the expansion of the global transnational agricultural planting scale, research on transnational agricultural land investment is growing. In order to analyze the development context and basic characteristics of this research, and to discover the research hotspots and frontiers, this study used documentation and bibliometric methods to examine the achievements of it. The results show the following: (1) Transnational agricultural land investment research is mainly focused on the social sciences, development studies, economics, environmental sciences and geography. (2) The concentration of researchers in this research field is not high, and there is still a lack of authoritative researchers with high influence. The cooperation network has been initially formed between research institutions. Among them, universities and research institutes are the main institutions of transnational agricultural land investment research, but the degree of integration among the research teams is not high. (3) The evolution of the research theme of the field has experienced three stages—an embryonic stage, growth stage and stable stage—and the research content shows a trend of continuous divergence and deepening. (4) From 2005 to 2019, the research hotspots of the research focused on “Land Grabbing, Global Land, Africa, Investment”. At present, the emerging frontier research topics are “Indonesia, Livelihood, Trajectory and Sustainability”. With many years of development, the research has become an obvious "land" attribute, independent from traditional agricultural economic research, and the research topics are becoming more and more mature, refined and diversified. Transnational agricultural land investment research is attracting continuous attention from scholars in multiple disciplines and fields.
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- 2021
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11. Development of Species-Specific SCAR Markers, Based on a SCoT Analysis, to Authenticate Physalis (Solanaceae) Species
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Shangguo Feng, Yujia Zhu, Chenliang Yu, Kaili Jiao, Mengying Jiang, Jiangjie Lu, Chenjia Shen, Qicai Ying, and Huizhong Wang
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Physalis species ,species-specific ,SCoT markers ,SCAR markers ,marker development ,Genetics ,QH426-470 - Abstract
Physalis is an important genus in the Solanaceae family. It includes many species of significant medicinal value, edible value, and ornamental value. However, many Physalis species are easily confused because of their similar morphological traits, which hinder the utilization and protection of Physalis resources. Therefore, it is necessary to create fast, sensitive, and reliable methods for the Physalis species authentication. Intended for that, in this study, species-specific sequence-characterized amplified region (SCAR) markers were developed for accurate identification of the closely related Physalis species P. angulata, P. minima, P. pubescens, and P. alkekengi var. franchetii, based on a simple and novel marker system, start codon targeted (SCoT) marker. A total of 34 selected SCoT primers yielded 289 reliable SCoT loci, of which 265 were polymorphic. Four species-specific SCoT fragments (SCoT3-1404, SCoT3-1589, SCoT5-550, and SCoT36-520) from Physalis species were successfully identified, cloned, and sequenced. Based on these selected specific DNA fragments, four SCAR primers pairs were developed and named ST3KZ, ST3MSJ, ST5SJ, and ST36XSJ. PCR analysis of each of these primer pairs clearly demonstrated a specific amplified band in all samples of the target Physalis species, but no amplification was observed in other Physalis species. Therefore, the species-specific SCAR primer pairs developed in this study could be used as powerful tools that can rapidly, effectively, and reliably identify and differentiate Physalis species.
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- 2018
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12. e-Bitter: Bitterant Prediction by the Consensus Voting From the Machine-Learning Methods
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Suqing Zheng, Mengying Jiang, Chengwei Zhao, Rui Zhu, Zhicheng Hu, Yong Xu, and Fu Lin
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QSAR ,bitter taste ,bitterant prediction ,classification ,machine learning ,taste prediction ,Chemistry ,QD1-999 - Abstract
In-silico bitterant prediction received the considerable attention due to the expensive and laborious experimental-screening of the bitterant. In this work, we collect the fully experimental dataset containing 707 bitterants and 592 non-bitterants, which is distinct from the fully or partially hypothetical non-bitterant dataset used in the previous works. Based on this experimental dataset, we harness the consensus votes from the multiple machine-learning methods (e.g., deep learning etc.) combined with the molecular fingerprint to build the bitter/bitterless classification models with five-fold cross-validation, which are further inspected by the Y-randomization test and applicability domain analysis. One of the best consensus models affords the accuracy, precision, specificity, sensitivity, F1-score, and Matthews correlation coefficient (MCC) of 0.929, 0.918, 0.898, 0.954, 0.936, and 0.856 respectively on our test set. For the automatic prediction of bitterant, a graphic program “e-Bitter” is developed for the convenience of users via the simple mouse click. To our best knowledge, it is for the first time to adopt the consensus model for the bitterant prediction and develop the first free stand-alone software for the experimental food scientist.
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- 2018
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13. Molecular Identification of Dendrobium Species (Orchidaceae) Based on the DNA Barcode ITS2 Region and Its Application for Phylogenetic Study
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Shangguo Feng, Yan Jiang, Shang Wang, Mengying Jiang, Zhe Chen, Qicai Ying, and Huizhong Wang
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Dendrobium ,ITS2 ,DNA barcode ,species identification ,genetic relationship ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
The over-collection and habitat destruction of natural Dendrobium populations for their commercial medicinal value has led to these plants being under severe threat of extinction. In addition, many Dendrobium plants are similarly shaped and easily confused during the absence of flowering stages. In the present study, we examined the application of the ITS2 region in barcoding and phylogenetic analyses of Dendrobium species (Orchidaceae). For barcoding, ITS2 regions of 43 samples in Dendrobium were amplified. In combination with sequences from GenBank, the sequences were aligned using Clustal W and genetic distances were computed using MEGA V5.1. The success rate of PCR amplification and sequencing was 100%. There was a significant divergence between the inter- and intra-specific genetic distances of ITS2 regions, while the presence of a barcoding gap was obvious. Based on the BLAST1, nearest distance and TaxonGAP methods, our results showed that the ITS2 regions could successfully identify the species of most Dendrobium samples examined; Second, we used ITS2 as a DNA marker to infer phylogenetic relationships of 64 Dendrobium species. The results showed that cluster analysis using the ITS2 region mainly supported the relationship between the species of Dendrobium established by traditional morphological methods and many previous molecular analyses. To sum up, the ITS2 region can not only be used as an efficient barcode to identify Dendrobium species, but also has the potential to contribute to the phylogenetic analysis of the genus Dendrobium.
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- 2015
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14. Zymolytic Grain Extract (ZGE) Significantly Extends the Lifespan and Enhances the Environmental Stress Resistance of Caenorhabditis elegans
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Lu Hou, Mengying Jiang, Qiong Guo, and Wei Shi
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zymolytic grain extract ,C. elegans ,lifespan elongation ,ultraviolet radiation resistance ,FUDR resistance ,Biology (General) ,QH301-705.5 ,Chemistry ,QD1-999 - Abstract
Many reports have shown that grains play an important role in our daily lives and can provide energy and nutrients to protect us from various diseases, and they are considered to be indispensable parts of our lives. It has been reported that some constituents in grains could exert functional effects against HIV infections and multiple cancers. Zymolytic grain can produce some new useful molecules and thus support the cell nutrients in the human body. In this study, the effects of zymolytic grain extract (ZGE) supernatants on the changes of nematode indicators were investigated, including lifespan, self-brood size, and body length in environmental conditions (temperature, ultraviolet radiation or 5-fluoro-2′-deoxyuridine (FUDR) stimuli). We found that, compared to the control group, the ZGE supernatant-feeding group could prolong the lifespan of nematodes under normal conditions. More importantly, ZGE supernatants could improve the ability of nematodes to resist stress. When the concentration of FUDR was 400 or 50 μM, the ZGE supernatant-feeding group could prolong lifespan by an average of 38.4% compared to the control group, and the eggs of the ZGE supernatant-feeding group could hatch and develop into adults. These results indicated that ZGE could protect C. elegans from external stress and thus prolong their lifespan and improve the physiological state of nematodes. Therefore, ZGE supernatant has potential to be used as a nutritional product in antioxidant and anti-aging research.
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- 2019
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15. Application of the ribosomal DNA ITS2 region of Physalis (Solanaceae): DNA barcoding and phylogenetic study
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Shangguo Feng, Mengying Jiang, Yujun Shi, Kaili Jiao, Chenjia Shen, Jiangjie Lu, Qicai Ying, and Huizhong Wang
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Physalis ,DNA barcoding ,molecular identification ,ITS2 ,phylogenetic relationship ,Plant culture ,SB1-1110 - Abstract
Recently, commercial interest in Physalis species has grown worldwide due to their high nutritional value, edible fruit and potential medicinal properties. However, many Physalis species have similar shapes and are easily confused, and consequently the phylogenetic relationships between Physalis species are poorly understood. This hinders their safe utilization and genetic resource conservation. In this study, the nuclear ribosomal ITS2 region was used to identify species and phylogenetically examine Physalis. Eighty-six ITS2 regions from 45 Physalis species were analyzed. The ITS2 sequences were aligned using Clustal W and genetic distances were calculated using MEGA V6.0. The results showed that ITS2 regions have significant intra- and inter-specific divergences, obvious barcoding gaps, and higher species discrimination rates (82.2% for both the BLASTA1 and nearest distance methods). In addition, the secondary structure of ITS2 provided another way to differentiate species. Cluster analysis based on ITS2 regions largely concurred with the relationships among Physalis species established by many previous molecular analyses, and showed that most sections of Physalis appear to be polyphyletic. Our results demonstrated that ITS2 can be used as an efficient and powerful marker in the identification and phylogenetic study of Physalis species. The technique provides a scientific basis for the conservation of Physalis plants and for utilization of resources.
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- 2016
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16. Linear vs. Nonlinear Extreme Learning Machine for Spectral-Spatial Classification of Hyperspectral Images
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Faxian Cao, Zhijing Yang, Jinchang Ren, Mengying Jiang, and Wing-Kuen Ling
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hyperspectral image (HSI) ,extreme learning machine (ELM) ,spectral-spatial classification ,discriminative random field (DRF) ,loopy belief propagation (LBP) ,Chemical technology ,TP1-1185 - Abstract
As a new machine learning approach, the extreme learning machine (ELM) has received much attention due to its good performance. However, when directly applied to hyperspectral image (HSI) classification, the recognition rate is low. This is because ELM does not use spatial information, which is very important for HSI classification. In view of this, this paper proposes a new framework for the spectral-spatial classification of HSI by combining ELM with loopy belief propagation (LBP). The original ELM is linear, and the nonlinear ELMs (or Kernel ELMs) are an improvement of linear ELM (LELM). However, based on lots of experiments and much analysis, it is found that the LELM is a better choice than nonlinear ELM for the spectral-spatial classification of HSI. Furthermore, we exploit the marginal probability distribution that uses the whole information in the HSI and learns such a distribution using the LBP. The proposed method not only maintains the fast speed of ELM, but also greatly improves the accuracy of classification. The experimental results in the well-known HSI data sets, Indian Pines, and Pavia University, demonstrate the good performance of the proposed method.
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- 2017
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17. PRAME Promotes Cervical Cancer Proliferation and Migration via Wnt/β-Catenin Pathway Regulation
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Xin Chen, Mengying Jiang, Shengjie Zhou, Hong Chen, Gendi Song, Yichen Wu, and Xueqiong Zhu
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Cancer Research ,Oncology ,PRAME ,cervical cancer ,Wnt/β-catenin signaling ,tumorigenesis ,proliferation - Abstract
A significant burden is placed on the lives of females due to cervical cancer, which is currently the leading cause of cancer death among women. Preferentially expressed antigen in melanoma (PRAME) belongs to the CTA gene family and was found to be abnormally expressed among different types of cancers. Our previous research also indicated that PRAME was highly expressed in cervical cancer compared with normal tissues. However, the roles and detailed mechanisms of PRAME have not been explored in cervical cancer. In the present study, the expression of PRAME in cervical tissues and cells was detected by immunohistochemistry (IHC), qRT-PCR, and Western blotting. Additionally, CCK-8, BrdU, scratch, transwell, and flow cytometry assays were conducted to explore the function of PRAME in regulating the malignant biological behaviors of cervical cancer cells. Nude mice were used to confirm the role of PRAME in tumor growth in vivo. Furthermore, the Wnt inhibitor MSAB was used to verify the role of PRAME in regulating the Wnt/β-catenin pathway both in vitro and in vivo. The results of IHC, qRT-PCR, and Western blotting showed that PRAME was highly expressed in cervical cancer tissues and cells. PRAME knockdown attenuated cell growth, migration, and invasion; induced G0/G1 arrest; and increased cell apoptosis in C33A and SiHa cells through Wnt/β-catenin signaling regulation. However, the upregulation of PRAME exhibited the opposite effects accordingly, which could be partly reversed via MSAB treatment. The growth rate of xenograft tumors was enhanced when PRAME was overexpressed via Wnt/β-catenin signaling activation. Taken together, PRAME is associated with cervical cancer occurrence and progression mediated by Wnt/β-catenin signaling, suggesting that PRAME might be a factor in manipulating cervical carcinogenesis and a potential therapeutic target.
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- 2023
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18. NSCKL: Normalized Spectral Clustering With Kernel-Based Learning for Semisupervised Hyperspectral Image Classification
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Yuanchao Su, Lianru Gao, Mengying Jiang, Antonio Plaza, Xu Sun, and Bing Zhang
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Human-Computer Interaction ,Control and Systems Engineering ,Electrical and Electronic Engineering ,Software ,Computer Science Applications ,Information Systems - Abstract
Spatial-spectral classification (SSC) has become a trend for hyperspectral image (HSI) classification. However, most SSC methods mainly consider local information, so that some correlations may not be effectively discovered when they appear in regions that are not contiguous. Although many SSC methods can acquire spatial-contextual characteristics via spatial filtering, they lack the ability to consider correlations in non-Euclidean spaces. To address the aforementioned issues, we develop a new semisupervised HSI classification approach based on normalized spectral clustering with kernel-based learning (NSCKL), which can aggregate local-to-global correlations to achieve a distinguishable embedding to improve HSI classification performance. In this work, we propose a normalized spectral clustering (NSC) scheme that can learn new features under a manifold assumption. Specifically, we first design a kernel-based iterative filter (KIF) to establish vertices of the undirected graph, aiming to assign initial connections to the nodes associated with pixels. The NSC first gathers local correlations in the Euclidean space and then captures global correlations in the manifold. Even though homogeneous pixels are distributed in noncontiguous regions, our NSC can still aggregate correlations to generate new (clustered) features. Finally, the clustered features and a kernel-based extreme learning machine (KELM) are employed to achieve the semisupervised classification. The effectiveness of our NSCKL is evaluated by using several HSIs. When compared with other state-of-the-art (SOTA) classification approaches, our newly proposed NSCKL demonstrates very competitive performance. The codes will be available at https://github.com/yuanchaosu/TCYB-nsckl.
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- 2022
19. Significant value of XRCC2 and XRCC9 expression in the prognosis of human ovarian carcinoma
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Xueqiong Zhu, Yi Liu, Mengying Jiang, Yichi Xu, and Weinan Chen
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endocrine system ,medicine.diagnostic_test ,endocrine system diseases ,XRCC2 ,business.industry ,DNA repair protein XRCC4 ,Immunofluorescence ,medicine.disease ,Prognosis ,female genital diseases and pregnancy complications ,Ovarian carcinomas ,Blot ,Serous fluid ,Oncology ,Ovarian carcinoma ,Cancer research ,medicine ,Immunohistochemistry ,XRCC9 ,Ovarian cancer ,business ,XRCC4 ,Research Paper - Abstract
Background: The x-ray repair cross-complementing (XRCC) family is essential in DNA repair processes. The predictive roles of XRCCs remain unclear in ovarian carcinomas. Therefore, detecting the relationship between XRCCs expression and ovarian carcinomas prognosis is increasingly pivotal. Methods: Using the "Kaplan-Meier (KM) plotter" database, progression-free survival (PFS) and overall survival (OS) were utilized to evaluate the prognosis of XRCCs mRNA expression in ovarian carcinoma patients with clinical outcomes. Then, mRNA level and protein levels of XRCCs were assessed in normal ovarian cells and ovarian carcinoma cell lines by real-time qPCR, Western blotting and immunofluorescence analysis. Additionally, expression of the XRCCs protein in tissues from ovarian carcinomas and normal ovary was identified by immunohistochemical staining. Results: Higher mRNA levels of XRCC2 and XRCC9 predicted longer PFS and OS in all women with ovarian malignance, while elevated XRCC4 mRNA levels were linked to poor PFS and OS in all ovarian cancer patients. Elevated mRNA of XRCC2 was also correlated with better PFS in patients with serous ovarian carcinomas, and better PFS and OS in grade III and stage III+IV ovarian carcinomas patients. What's more, highly expressed levels of XRCC9 mRNA were also linked to favorable PFS and OS in patients with serous, grade III and stage III+IV ovarian carcinomas. Nevertheless, elevated mRNA expression of XRCC4 was linked to worse PFS and OS for patients with serous, grade III as well as all stages of ovarian malignance. Additionally, when compared to ovarian carcinoma cell lines, elevated mRNA and protein levels of XRCC2 and XRCC9 were detected in normal ovarian cells. Consistently, higher staining of XRCC2 and XRCC9 was also detected in normal ovarian cells than that in ovarian cancer cells. Then, higher staining levels of XRCC2 and XRCC9 were discovered in healthy control tissues than that in ovarian carcinoma tissues. Meanwhile, XRCC4 was identified to be overexpressed in tissues of ovarian malignance as compared to normal control tissues. However, XRCC4 mRNA and protein levels were lower in ovarian cancer cells than that in normal cell line. Conclusion: Elevated XRCC2 and XRCC9 expression levels were observed in normal ovarian cells and tissues than that in ovarian malignance cells and tissues, and exhibited better prognostic value especially in patients with serous, poor differentiated and late stage, suggesting that XRCC2 and XRCC9 may be potent prognostic markers in ovarian cancer patients and can guide personalized surveillance for ovarian malignance.
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- 2021
20. Predictive Classification System for Low Back Pain Based on Unsupervised Clustering
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Chun Jiang, Shi Yuanlu, Weibin Shi, Chang Jiang, Shen Linghao, Na Shen, Lixia Jin, Zhenzhou Feng, Zixian Chen, Mengying Jiang, Lishu Gu, Yuanwu Cao, Qu Qixun, and Xiaoxing Jiang
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medicine.medical_specialty ,medicine.diagnostic_test ,business.industry ,Magnetic resonance imaging ,Low back pain ,03 medical and health sciences ,0302 clinical medicine ,Physical medicine and rehabilitation ,Lumbar ,medicine ,Orthopedics and Sports Medicine ,Surgery ,030212 general & internal medicine ,Neurology (clinical) ,medicine.symptom ,Unsupervised clustering ,business ,030217 neurology & neurosurgery - Abstract
Study Design: Retrospective study. Objective: Lumbar magnetic resonance imaging (MRI) findings are believed to be associated with low back pain (LBP). This study sought to develop a new predictive classification system for low back pain. Method: Normal subjects with repeated lumbar MRI scans were retrospectively enrolled. A new classification system, based on the radiological features on MRI, was developed using an unsupervised clustering method. Results: One hundred and fifty-nine subjects were included. Three distinguishable clusters were identified with unsupervised clustering that were significantly correlated with LBP ( P = .017). The incidence of LBP was highest in cluster 3 (57.14%), nearly twice the incidence in cluster 1 (30.11%). There were obvious differences in the sagittal parameters among the 3 clusters. Cluster 3 had the smallest intervertebral height. Based on follow-up findings, 27% of subjects changed clusters. More subjects changed from cluster 1 to clusters 2 or 3 (14.5%) than changed from cluster 2 or cluster 3 to cluster 1 (5%). Participation in sport was more frequent in subjects who changed from cluster 3 to cluster 1. Conclusion: Using an unsupervised clustering method, we developed a new classification system comprising 3 clusters, which were significantly correlated with LBP. The prediction of LBP is independent of age and better than that based on individual sagittal parameters derived from MRI. A change in cluster during follow-up may partially predict lumbar degeneration. This study provides a new system for the prediction of LBP that should be useful for its diagnosis and treatment.
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- 2021
21. δ-Catenin Requirement in Keratinocyte Proliferation and DNA Repair Identifies a Therapeutic Target for Photoaging
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Yingjie Shen, Kwonseop Kim, Zhongxin Zhu, Siyi Zhang, Mengying Jiang, Zhili Liu, Yeyi Zheng, Xiaokun Li, Litai Jin, and Weitao Cong
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Cell Biology ,Dermatology ,Molecular Biology ,Biochemistry - Abstract
Skin photoaging is a complicated pathological process and is mainly due to UV irradiation, especially UVB irradiation. Damage induction by UVB is a complex process, involving intricate molecular mechanisms. The formation of bulky photoproducts in the DNA globally affects transcription and splicing and results in the dysfunction of keratinocytes. In this study, we show that δ-catenin is predominantly distributed in keratinocytes of the skin epidermis and functionally accelerates cell proliferation and DNA repair. Ex vivo protein profiling reveals that δ-catenin upregulates the phosphorylation of RSK2
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- 2022
22. DHODH Inhibition Exerts Synergistic Therapeutic Effect with Cisplatin to Induce Ferroptosis in Cervical Cancer through Regulating mTOR Pathway
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Mengying Jiang, Yizuo Song, Hejing Liu, Yanshan Jin, Ruyi Li, and Xueqiong Zhu
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Cancer Research ,Oncology ,DHODH ,cervical cancer ,ferroptosis ,brequinar ,cisplatin ,mTOR - Abstract
Ferroptosis exhibits a potent antitumor effect and dihydroorotate dehydrogenase (DHODH) has recently been identified as a novel ferroptosis defender. However, the role of DHODH inhibition in cervical cancer cells is unclear, particularly in synergy with cisplatin via ferroptosis. Herein, shRNA and brequinar were used to knock down DHODH and directly inhibit DHODH, respectively. Immunohistochemistry and Western blotting assays were performed to measure the expression of proteins. CCK-8 and colony formation assays were employed to assess the cell viability and proliferation. Ferroptosis was monitored through flow cytometry, the malondialdehyde assay kit and JC-1 staining analyses. The nude mouse xenograft model was generated to examine the effect of combination of DHODH inhibition and cisplatin on tumor growth in vivo. The expression of DHODH was increased in cervical cancer tissues. DHODH inhibition inhibited the proliferation and promoted the ferroptosis in cervical cancer cells. A combination of DHODH inhibition and cisplatin synergistically induced both in vitro and in vivo ferroptosis and downregulated the ferroptosis defender mTOR pathway. Therefore, the combination of DHODH inhibition and cisplatin exhibits synergistic effects on ferroptosis induction via inhibiting the mTOR pathway could provide a promising way for cervical cancer therapy.
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- 2023
23. Eco-Friendly Chitosan@Silver/Plant Fiber Membranes for Masks with Thermal Comfortability and Self-Sterilization
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Qian Zou, Yinuo Gai, Xiaotang Gai, Siwei Xiong, Nanjun Wei, Mengying Jiang, Liye Chen, Yang Liu, and Jinggang Gai
- Abstract
The surgical masks have been essential consumables for public in the COVID-19 pandemic. However, long-time wearing masks will make wearers feel uncomfortable and massive discarded non-biodegradable masks lead to a heavy burden on our environment. In this paper, we adopt degradable chitosan@silver (CS@Ag) core-shell fibers and plant fibers to prepare an eco-friendly mask with excellent thermal comfort, self-sterilization, and antiviral effects. The thermal network of CS@Ag core-shell fibers highly improves the in-plane thermal conductivity of masks, which is 4.45 times higher than that of commercial masks. Because of the electrical conductivity of Ag, the fabricated mask can be electrically heated to warm the wearer in a cold environment and disinfect COVID-19 facilely at room temperature. Meanwhile, the in-situ reduced silver nanoparticles (AgNPs) endow the mask with superior antibacterial properties. Therefore, this mask shows a great potential to address the urgent need for a thermally comfortable, antibacterial, antiviral, and eco-friendly mask.
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- 2021
24. Ribosomal S6 Protein Kinase 2 Aggravates the Process of Systemic Scleroderma
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Mengying Jiang, Jianan Wang, Yingjie Shen, Junjie Zhu, Zhili Liu, Wenjie Gong, Ying Yu, Siyi Zhang, Xuan Zhou, Shengqu He, Yonghuan Song, Zhongxin Zhu, Litai Jin, and Weitao Cong
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Mice ,Scleroderma, Systemic ,Glycogen Synthase Kinase 3 beta ,Animals ,Cell Biology ,Dermatology ,Fibroblasts ,Phosphorylation ,Molecular Biology ,Biochemistry ,Fibrosis ,Ribosomal Protein S6 Kinases, 90-kDa - Abstract
Systemic sclerosis is a complex process of pathogenesis, and the contributions of inherited genes, infections, and chemicals remain largely unknown. In this study, we showed that p90 ribosomal S6 protein kinase 2 (RSK2) was selectively upregulated in fibrotic skin and fibroblasts treated with the profibrotic cytokine TGF-β. Moreover, knockout of Rsk2 specifically in skin fibroblasts or pharmacological inhibition of RSK2 attenuated skin fibrosis in a mouse model. Mechanistically, RSK2 directly interacted with glycogen synthase kinase 3β in vivo and in vitro and thereby induced phosphorylation of glycogen synthase kinase 3β at Ser9 to inhibit ubiquitination and degradation of GLI1, which promoted fibroblast differentiation and skin fibrosis. Consequently, RSK2 plays an important role in the dermal skin of systemic sclerosis. These findings provided a potential therapeutic target for systemic sclerosis.
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- 2021
25. Phosphorylation of α-CateninS641 Suppresses the NF-κB Pathway in Fibroblasts to Activate Skin Wound Repair
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Jianan Wang, Jia Sun, Kwonseop Kim, Litai Jin, Yetong Dong, Wenjie Gong, Nan Wang, Siyi Zhang, Zhili Liu, Weitao Cong, Xixi Chen, Mengying Jiang, Zhongxin Zhu, Ying Yu, and Yingjie Shen
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integumentary system ,biology ,Chemistry ,NF-κB ,Cell Biology ,Dermatology ,Biochemistry ,Cell biology ,IκBα ,chemistry.chemical_compound ,medicine.anatomical_structure ,Downregulation and upregulation ,Ubiquitin ,medicine ,biology.protein ,Phosphorylation ,Kinase activity ,Fibroblast ,Wound healing ,Molecular Biology - Abstract
Skin wound healing is a complex process involving intricate molecular mechanisms that remain unknown. Restoration of homeostasis after wounding requires the remodeling function of fibroblasts. Here, we demonstrate that phosphorylation of α-cateninS641 was upregulated in fibroblasts upon wounding, which accelerated their proliferation and migration to restore the skin barrier. At the wound edge, phospho-α-cateninS641 stabilized IκBα and thereby impaired expression of NF-κB target genes to promote proliferation and migration of fibroblasts. Mechanically, phospho-α-cateninS641 blocked K48-linked polyubiquitination and proteasomal degradation of IκBα. Moreover, we also demonstrated that EGF/EGFR/CK2α was function as a key upstream signaling of α-catenin by phosphorylating α-catenin at S641. Wound repair was significantly disrupted in skin of mice in which α-catenin phosphorylation and CK2α kinase activity were perturbed in fibroblasts. These findings provide insights into the molecular control of fibroblast proliferation and migration in response to wounding and identify potential targets for the treatment of defective wound repair.
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- 2022
26. MIXed Plastics Biodegradation and UPcycling Using Microbial Communities: The EU Horizon 2020 Project MIX-UP
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Mengying Jiang, Juan Nogales, Weiliang Dong, Guo Qiang Chen, Nick Wierckx, Lars Mathias Blank, Tanja Narancic, Tilman Floehr, Ren Wei, Luo Liu, Ulrich Schwaneberg, Jürgen Klankermayer, Tianwei Tan, Hendrik Ballerstedt, Uwe T. Bornscheuer, Andrei Sarbu, Fengxue Xin, Kevin E. O’Connor, Eric Pollet, Rémi Perrin, Andreas Jupke, Thomas Haarmann, de Lorenzo, Auxi Prieto, Till Tiso, Xing J, Luc Avérous, and William Casey
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Upcycling ,Horizon (archaeology) ,Environmental engineering ,Environmental science ,Biodegradation - Abstract
This article introduces the EU Horizon 2020 research project MIX-UP, “Mixed plastics biodegradation and upcycling using microbial communities”. The project focuses on the ambitious vision to change the traditional linear value chain of plastics to a sustainable, biodegradable based one. In MIX-UP, plastic mixtures containing five of the top six fossil-based recalcitrant plastics (PE, PUR, PP, PET, and PS), along with upcoming biobased and biodegradable plastics (bioplastics) such as PHA and PLA, will be used as feedstock for microbial transformations. The generated new workflow increases recycling quotas and adds value to present poorly recycled plastic waste streams. Consecutive controlled enzymatic and microbial degradation of mechanically pre-treated plastics waste combined with subsequent microbial conversion to polymers and value-added chemicals by mixed cultures. Through optimization of known plastic-degrading enzymes by integrated protein engineering, high specific binding capacities, stability, and catalytic efficacy towards a broad spectrum of plastic polymers under high salt content and temperature conditions will be achieved. Another focus lies in the search and isolation of novel enzymes active on recalcitrant polymers. MIX-UP will also enhance the production of enzymes and formulate enzyme cocktails tailored to specific waste streams. In vivo and in vitro application of these cocktails enables stable, self-sustaining microbiomes to convert the released plastic monomers selectively into value-added products, key building blocks, and biomass. Any of the remaining material recalcitrant to the enzymatic activity will be recirculated into the process by physicochemical treatment. The Chinese-European MIX-UP is a multidisciplinary and industry-participating consortium to address the market need for novel sustainable routes to valorize plastic waste streams. MIX-UP realizes a circular (bio) plastic economy and will contribute where mechanical and chemical plastic recycling show limits.
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- 2021
27. Phosphorylation of α-Catenin
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Yingjie, Shen, Zhongxin, Zhu, Weitao, Cong, Mengying, Jiang, Jianan, Wang, Xixi, Chen, Nan, Wang, Ying, Yu, Yetong, Dong, Zhili, Liu, Jia, Sun, Wenjie, Gong, Siyi, Zhang, Kwonseop, Kim, and Litai, Jin
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Mice ,Wound Healing ,NF-KappaB Inhibitor alpha ,NF-kappa B ,Animals ,Fibroblasts ,Phosphorylation ,alpha Catenin ,beta Catenin ,Skin - Abstract
Skin wound healing is a complex process involving intricate molecular mechanisms that remain unknown. Restoration of homeostasis after wounding requires the remodeling function of fibroblasts. In this study, we show that phosphorylation of α-catenin
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- 2021
28. Towards bio-upcycling of polyethylene terephthalate
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Annett Honak, Luc Avérous, Tanja Narancic, Mengying Jiang, Rémi Perrin, Ren Wei, Katja Schröder, Lars M. Blank, Shane T. Kenny, Till Tiso, Eric Pollet, Kevin E. O’Connor, Wolfgang Zimmermann, Nick Wierckx, Niall Beagan, RWTH Aachen University, University College Dublin [Dublin] (UCD), Leipzig University, Institut de chimie et procédés pour l'énergie, l'environnement et la santé (ICPEES), Université de Strasbourg (UNISTRA)-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS), and Soprema
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0106 biological sciences ,Plastic recycling ,Hydrolases ,Bioengineering ,Raw material ,01 natural sciences ,Applied Microbiology and Biotechnology ,Bioplastic ,Polyhydroxyalkanoates ,Hydrolysate ,03 medical and health sciences ,chemistry.chemical_compound ,Biopolymers ,010608 biotechnology ,Pseudomonas ,Polyethylene terephthalate ,ddc:610 ,Synthetic biology ,030304 developmental biology ,0303 health sciences ,Chemistry ,Polyethylene Terephthalates ,Pseudomonas putida ,[SDE.IE]Environmental Sciences/Environmental Engineering ,Polyethylene terephthalate (PET) degradation ,Polyester ,Chemical engineering ,Ethylene glycol ,Plastics ,Metabolic engineering ,Biotechnology - Abstract
Metabolic engineering 66, 167-178 (2021). doi:10.1016/j.ymben.2021.03.011, Published by Academic Press, Orlando, Fla.
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- 2021
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29. Explore the recycling of bioleaching functional bacteria and sulfur substrate using the sulfur-covered biochar particles
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Chuncheng Wu, Mengying Jiang, Zhe Ye, Yuchen Cai, Yutao Shen, Haizhen Wang, Qi Lin, Chaofeng Shen, Baolan Hu, and Liping Lou
- Abstract
Background Bioleaching has been attracting attention recent years as an emerging sediment heavy metal pollution remediation technology. However, the use of sulfur powder as sulfur substrate causes the problem of “post-acidification”, and the free bioleaching functional bacteria which are susceptible to environmental impact during reactor operation cannot be used efficiently for multiple rounds. These problems can be solved if the sulfur substrate and the bioleaching functional bacteria can be recycled simultaneously after bioleaching. A new kind of sulfur substrate, the laboratory-made sulfur-covered biochar particles, were used in the bioleaching experiment, compared with sulfur powder and sulfur powder mixed with the surfactant rhamnolipid. Results The sulfur-covered biochar particles exhibited superior bioleaching performance, including faster acidification rate, SO 4 2- production rate and heavy metal bioleaching rate, and higher heavy metal solubilization percentage (Ni 33.76%; Cu 66.16%; Zn 65.494%), which was resulted from the acceleration of bioleaching reaction by the bioleaching functional bacteria immobilized on the biochar surface. Otherwise, the sulfur-covered biochar particles could be reused in the second round, and the heavy metal solubilization percentage (Ni32.84%, Cu69.93%, Zn67.17%) was comparable with that of the first round. Nevertheless, the sulfur content became the main limiting factor causing poor bioleaching performance during the third round. The sulfur mixed with the surfactant rhamnolipid did not show significant effect in promoting acidification and heavy metal solubilization due to high levels of organic matter and the impact of the low pH value. Conclusion The research indicated the laboratory-made sulfur-covered biochar particles could realize the dual immobilization of the bioleaching functional bacteria and the sulfur substrate to support their recycling and reuse in the second bioleaching round. In the future research, the way to maintain the reuse of the sulfur-covered biochar particle for more rounds will be explored.
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- 2020
30. Additional file 1 of Exploring the recycling of bioleaching functional bacteria and sulfur substrate using the sulfur-covered biochar particles
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Chuncheng Wu, Mengying Jiang, Ye, Zhe, Yuchen Cai, Yutao Shen, Haizhen Wang, Lin, Qi, Chaofeng Shen, Baolan Hu, and Lou, Liping
- Abstract
Additional file 1: Fig. S1. Amount of heavy metal leached from the sediment during the bioleaching process. Fig. S2. Infrared spectrum analysis of bamboo biochar. Fig. S3. Amount of heavy metal leached from the sediment during the second and the third round of bioleaching.
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- 2020
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31. Extreme Learning Machine With Enhanced Composite Feature for Spectral-Spatial Hyperspectral Image Classification
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Yunmeng Lu, Faxian Cao, and Mengying Jiang
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General Computer Science ,Computer science ,business.industry ,enhanced composite feature (CF) ,Feature extraction ,0211 other engineering and technologies ,General Engineering ,Hyperspectral imaging ,Pattern recognition ,02 engineering and technology ,Extreme learning machine (ELM) ,Data set ,Kernel (linear algebra) ,hyperspectral images (HSIs) ,Kernel (statistics) ,0202 electrical engineering, electronic engineering, information engineering ,Feature (machine learning) ,020201 artificial intelligence & image processing ,General Materials Science ,Artificial intelligence ,lcsh:Electrical engineering. Electronics. Nuclear engineering ,business ,lcsh:TK1-9971 ,021101 geological & geomatics engineering ,Extreme learning machine - Abstract
The applications of extreme learning machine (ELM) to the hyperspectral-image (HSI) classification have attracted a great deal of research attention because of its excellent performance and fast learning speed. However, conventional ELM is unable to achieve satisfactory accuracy since it only exploits the spectral information to conduct the HSI classification. To address the above issues, we propose a novel classification algorithm based on both spectral and multiscale spatial information, referred to as ELM with enhanced composite feature (ELM-ECF). To be specific, we adopt the original ELM, exploit a multiscale spatial weighted-mean-filtering-based approach to extract multiple spatial information, and use the majority vote method to select the final classification result. The proposed ELM-ECF significantly improves the classification accuracy of the original ELM. Experimental results on three public HSIs (i.e., Indian Pines data set, Pavia University data set, and Salinas data set) illustrate that the proposed ELM-ECF outperforms a variety of the state-of-the-art HSI classification counterparts in terms of classification accuracy.
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- 2018
32. Molecular identification of species of Physalis (Solanaceae) using a candidate DNA barcode: the chloroplast psbA–trnH intergenic region
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Shangguo Feng, Mengying Jiang, Huizhong Wang, Yujia Zhu, Hongfen Wang, and Kaili Jiao
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0106 biological sciences ,0301 basic medicine ,DNA, Plant ,Physalis ,Mega ,Polymerase Chain Reaction ,01 natural sciences ,DNA barcoding ,03 medical and health sciences ,Intergenic region ,Genus ,Genes, Chloroplast ,Botany ,Genetic variation ,Genetics ,DNA Barcoding, Taxonomic ,Molecular Biology ,biology ,Phylogenetic tree ,Genetic Variation ,Photosystem II Protein Complex ,General Medicine ,biology.organism_classification ,030104 developmental biology ,Evolutionary biology ,DNA, Intergenic ,010606 plant biology & botany ,Biotechnology ,Nicandra - Abstract
Physalis L., an important genus of the family Solanaceae, includes many commercially important edible and medicinal species. Traditionally, species identification is based on morphological traits; however, the highly similar morphological traits among species of Physalis make this approach difficult. In this study, we evaluated the feasibility of using a popular DNA barcode, the chloroplast psbA–trnH intergenic region, in the identification of species of Physalis. Thirty-six psbA–trnH regions of species of Physalis and of the closely related plant Nicandra physalodes were analyzed. The success rates of PCR amplification and sequencing of the psbA–trnH region were 100%. MEGA V6.0 was utilized to align the psbA–trnH sequences and to compute genetic distances. The results show an apparent barcoding gap between intra- and interspecific variations. Results of both BLAST1 and nearest-distance methods prove that the psbA–trnH regions can be used to identify all species examined in the present study. In addition, phylogenetic analysis using psbA–trnH data revealed a distinct boundary between species. It also confirmed the relationship between species of Physalis and closely related species, as established by previous studies. In conclusion, the psbA–trnH intergenic region can be used as an efficient DNA barcode for the identification of species of Physalis.
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- 2018
33. Corrigendum: Molecular identification of species of
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Shangguo, Feng, Kaili, Jiao, Yujia, Zhu, Hongfen, Wang, Mengying, Jiang, and Huizhong, Wang
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- 2018
34. e-Bitter: Bitterant Prediction by the Consensus Voting From the Machine-Learning Methods
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Suqing Zheng, Mengying Jiang, Chengwei Zhao, Rui Zhu, Zhicheng Hu, Yong Xu, and Fu Lin
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0301 basic medicine ,Quantitative structure–activity relationship ,Computer science ,media_common.quotation_subject ,bitter taste ,Machine learning ,computer.software_genre ,bitterant prediction ,lcsh:Chemistry ,03 medical and health sciences ,Software ,Voting ,Sensitivity (control systems) ,media_common ,Original Research ,business.industry ,QSAR ,Deep learning ,General Chemistry ,Matthews correlation coefficient ,Chemistry ,030104 developmental biology ,machine learning ,lcsh:QD1-999 ,classification ,Test set ,taste prediction ,Artificial intelligence ,business ,computer ,Applicability domain - Abstract
In-silico bitterant prediction received the considerable attention due to the expensive and laborious experimental-screening of the bitterant. In this work, we collect the fully experimental dataset containing 707 bitterants and 592 non-bitterants, which is distinct from the fully or partially hypothetical non-bitterant dataset used in the previous works. Based on this experimental dataset, we harness the consensus votes from the multiple machine-learning methods (e.g., deep learning etc.) combined with the molecular fingerprint to build the bitter/bitterless classification models with five-fold cross-validation, which are further inspected by the Y-randomization test and applicability domain analysis. One of the best consensus models affords the accuracy, precision, specificity, sensitivity, F1-score, and Matthews correlation coefficient (MCC) of 0.929, 0.918, 0.898, 0.954, 0.936, and 0.856 respectively on our test set. For the automatic prediction of bitterant, a graphic program "e-Bitter" is developed for the convenience of users via the simple mouse click. To our best knowledge, it is for the first time to adopt the consensus model for the bitterant prediction and develop the first free stand-alone software for the experimental food scientist.
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- 2017
35. Molecular Identification of Dendrobium Species (Orchidaceae) Based on the DNA Barcode ITS2 Region and Its Application for Phylogenetic Study
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Zhe Chen, Shang Wang, Shangguo Feng, Huizhong Wang, Mengying Jiang, Yan Jiang, and Qicai Ying
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DNA, Plant ,species identification ,ITS2 ,Genetic relationship ,Mega ,DNA barcoding ,Article ,Catalysis ,lcsh:Chemistry ,Inorganic Chemistry ,Dendrobium ,Phylogenetics ,parasitic diseases ,Botany ,DNA barcode ,DNA Barcoding, Taxonomic ,Physical and Theoretical Chemistry ,lcsh:QH301-705.5 ,Molecular Biology ,Phylogeny ,Spectroscopy ,Orchidaceae ,biology ,Phylogenetic tree ,Organic Chemistry ,Genetic Variation ,General Medicine ,biology.organism_classification ,genetic relationship ,Computer Science Applications ,lcsh:Biology (General) ,lcsh:QD1-999 ,GenBank ,DNA, Intergenic - Abstract
The over-collection and habitat destruction of natural Dendrobium populations for their commercial medicinal value has led to these plants being under severe threat of extinction. In addition, many Dendrobium plants are similarly shaped and easily confused during the absence of flowering stages. In the present study, we examined the application of the ITS2 region in barcoding and phylogenetic analyses of Dendrobium species (Orchidaceae). For barcoding, ITS2 regions of 43 samples in Dendrobium were amplified. In combination with sequences from GenBank, the sequences were aligned using Clustal W and genetic distances were computed using MEGA V5.1. The success rate of PCR amplification and sequencing was 100%. There was a significant divergence between the inter- and intra-specific genetic distances of ITS2 regions, while the presence of a barcoding gap was obvious. Based on the BLAST1, nearest distance and TaxonGAP methods, our results showed that the ITS2 regions could successfully identify the species of most Dendrobium samples examined, Second, we used ITS2 as a DNA marker to infer phylogenetic relationships of 64 Dendrobium species. The results showed that cluster analysis using the ITS2 region mainly supported the relationship between the species of Dendrobium established by traditional morphological methods and many previous molecular analyses. To sum up, the ITS2 region can not only be used as an efficient barcode to identify Dendrobium species, but also has the potential to contribute to the phylogenetic analysis of the genus Dendrobium.
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- 2015
36. Start codon targeted (SCoT) and target region amplification polymorphism (TRAP) for evaluating the genetic relationship of Dendrobium species
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Mengying Jiang, Sai Yang, Zhe Chen, Shangguo Feng, Refeng He, Jiangjie Lu, and Huizhong Wang
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Genetic Markers ,Genetics ,Genetic diversity ,Polymorphism, Genetic ,Dendrogram ,Codon, Initiator ,Genetic relationship ,Sequence Analysis, DNA ,General Medicine ,Biology ,Genes, Plant ,biology.organism_classification ,Dendrobium ,chemistry.chemical_compound ,Start codon ,chemistry ,Polymorphism (computer science) ,Molecular marker ,Cluster Analysis ,Gene - Abstract
Two molecular marker systems, start codon targeted (SCoT) and target region amplification polymorphism (TRAP), were used for genetic relationship analysis of 36 Dendrobium species collected from China. Twenty-two selected SCoT primers produced 337 loci, of which 324 (96%) were polymorphic, whereas 13 TRAP primer combinations produced a total of 510 loci, with 500 (97.8%) of them being polymorphic. An average polymorphism information content of 0.953 and 0.983 was detected using the SCoT and TRAP primers, respectively, showing that a high degree of genetic diversity exists among Chinese Dendrobium species. The partition of clusters in the unweighted pair group method with arithmetic mean dendrogram and principal coordinate analysis plot based on the SCoT and TRAP markers was similar and clustered the 36 Dendrobium species into four main groups. Our results will provide useful information for resource protection and will also be useful to improve the current Dendrobium breeding programs. Our results also demonstrate that SCoT and TRAP markers are informative and can be used to evaluate genetic relationships between Dendrobium species.
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- 2015
37. Development of Species-Specific SCAR Markers, Based on a SCoT Analysis, to Authenticate
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Shangguo, Feng, Yujia, Zhu, Chenliang, Yu, Kaili, Jiao, Mengying, Jiang, Jiangjie, Lu, Chenjia, Shen, Qicai, Ying, and Huizhong, Wang
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- 2017
38. Linear vs. Nonlinear Extreme Learning Machine for Spectral-Spatial Classification of Hyperspectral Images
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Mengying Jiang, Wing-Kuen Ling, Jinchang Ren, Zhijing Yang, and Faxian Cao
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FOS: Computer and information sciences ,Computer science ,Computer Vision and Pattern Recognition (cs.CV) ,TK ,0211 other engineering and technologies ,Computer Science - Computer Vision and Pattern Recognition ,02 engineering and technology ,Belief propagation ,lcsh:Chemical technology ,Biochemistry ,Article ,Analytical Chemistry ,Machine Learning (cs.LG) ,loopy belief propagation (LBP) ,Kernel (linear algebra) ,hyperspectral image (HSI) ,extreme learning machine (ELM) ,spectral-spatial classification ,discriminative random field (DRF) ,0202 electrical engineering, electronic engineering, information engineering ,lcsh:TP1-1185 ,Electrical and Electronic Engineering ,Instrumentation ,021101 geological & geomatics engineering ,Extreme learning machine ,business.industry ,Hyperspectral imaging ,Pattern recognition ,Atomic and Molecular Physics, and Optics ,Nonlinear system ,Computer Science - Learning ,Kernel (image processing) ,020201 artificial intelligence & image processing ,Artificial intelligence ,Spatial classification ,Marginal distribution ,business - Abstract
As a new machine learning approach, extreme learning machine (ELM) has received wide attentions due to its good performances. However, when directly applied to the hyperspectral image (HSI) classification, the recognition rate is too low. This is because ELM does not use the spatial information which is very important for HSI classification. In view of this, this paper proposes a new framework for spectral-spatial classification of HSI by combining ELM with loopy belief propagation (LBP). The original ELM is linear, and the nonlinear ELMs (or Kernel ELMs) are the improvement of linear ELM (LELM). However, based on lots of experiments and analysis, we found out that the LELM is a better choice than nonlinear ELM for spectral-spatial classification of HSI. Furthermore, we exploit the marginal probability distribution that uses the whole information in the HSI and learn such distribution using the LBP. The proposed method not only maintain the fast speed of ELM, but also greatly improves the accuracy of classification. The experimental results in the well-known HSI data sets, Indian Pines and Pavia University, demonstrate the good performances of the proposed method., 13 pages,8 figures,3 tables,article
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- 2017
39. Application of the Ribosomal DNA ITS2 Region of Physalis (Solanaceae): DNA Barcoding and Phylogenetic Study
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Qicai Ying, Mengying Jiang, Jiangjie Lu, Huizhong Wang, Chenjia Shen, Shi Yujun, Kaili Jiao, and Shangguo Feng
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0301 basic medicine ,Phylogenetic tree ,biology ,Physalis ,phylogenetic relationship ,ITS2 ,molecular identification ,Plant Science ,lcsh:Plant culture ,Ribosomal RNA ,Mega ,biology.organism_classification ,DNA barcoding ,03 medical and health sciences ,030104 developmental biology ,Polyphyly ,Botany ,parasitic diseases ,Genetics ,lcsh:SB1-1110 ,Identification (biology) ,Ribosomal DNA ,Original Research - Abstract
Recently, commercial interest in Physalis species has grown worldwide due to their high nutritional value, edible fruit and potential medicinal properties. However, many Physalis species have similar shapes and are easily confused, and consequently the phylogenetic relationships between Physalis species are poorly understood. This hinders their safe utilization and genetic resource conservation. In this study, the nuclear ribosomal ITS2 region was used to identify species and phylogenetically examine Physalis. Eighty-six ITS2 regions from 45 Physalis species were analyzed. The ITS2 sequences were aligned using Clustal W and genetic distances were calculated using MEGA V6.0. The results showed that ITS2 regions have significant intra- and inter-specific divergences, obvious barcoding gaps, and higher species discrimination rates (82.2% for both the BLASTA1 and nearest distance methods). In addition, the secondary structure of ITS2 provided another way to differentiate species. Cluster analysis based on ITS2 regions largely concurred with the relationships among Physalis species established by many previous molecular analyses, and showed that most sections of Physalis appear to be polyphyletic. Our results demonstrated that ITS2 can be used as an efficient and powerful marker in the identification and phylogenetic study of Physalis species. The technique provides a scientific basis for the conservation of Physalis plants and for utilization of resources.
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- 2016
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40. Development of SSR Markers and Assessment of Genetic Diversity in Medicinal Chrysanthemum morifolium Cultivars
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Jiangjie Lu, He Renfeng, Xiao-Xia Shen, Huizhong Wang, Mengying Jiang, Shangguo Feng, Zhi'an Wang, and Yan Jiang
- Subjects
0106 biological sciences ,0301 basic medicine ,Plant Science ,01 natural sciences ,law.invention ,03 medical and health sciences ,law ,Polymorphism (computer science) ,EST-SSR ,Genetics ,marker development ,Cultivar ,Genetics (clinical) ,Polymerase chain reaction ,Original Research ,Genetic diversity ,biology ,Chrysanthemum morifolium ,phylogenetic relationship ,Dendrogram ,food and beverages ,genetic diversity ,biology.organism_classification ,030104 developmental biology ,GenBank ,Molecular Medicine ,Phylogenetic relationship ,010606 plant biology & botany - Abstract
Chrysanthemum morifolium, is a well-known flowering plant worldwide, and has a high commercial, floricultural, and medicinal value. In this study, simple-sequence repeat (SSR) markers were generated from EST datasets and were applied to assess the genetic diversity among 32 cultivars. A total of 218 in silico SSR loci were identified from 7300 C. morifolium ESTs retrieved from GenBank. Of all SSR loci, 61.47% of them (134) were hexa-nucleotide repeats, followed by tri-nucleotide repeats (17.89%), di-nucleotide repeats (12.39%), tetra-nucleotide repeats (4.13%), and penta-nucleotide repeats (4.13%). In this study, 17 novel EST-SSR markers were verified. Along with 38 SSR markers reported previously, 55 C. morifolium SSR markers were selected for further genetic diversity analysis. PCR amplification of these EST-SSRs produced 1319 fragments, 1306 of which showed polymorphism. The average polymorphism information content of the SSR primer pairs was 0.972 (0.938–0.993), which showed high genetic diversity among C. morifolium cultivars. Based on SSR markers, 32 C. morifolium cultivars were separated into two main groups by partitioning of the clusters using the unweighted pair group method with arithmetic mean dendrogram, which was further supported by a principal coordinate analysis plot. Phylogenetic relationship among C. morifolium cultivars as revealed by SSR markers was highly consistent with the classification of medicinal C. morifolium populations according to their origin and ecological distribution. Our results demonstrated that SSR markers were highly reproducible and informative, and could be used to evaluate genetic diversity and relationships among medicinal C. morifolium cultivars.
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- 2016
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41. Simple underwater wireless communication system
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Yiwen Wang, Mengying Jiang, Jingting Li, and Lin Gao
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Decodes ,Engineering ,biology ,business.industry ,Electrical engineering ,Submarine ,ComputerApplications_COMPUTERSINOTHERSYSTEMS ,General Medicine ,underwater ,biology.organism_classification ,Communications system ,Microcontroller ,wireless ,Conventional electrical unit ,Electronic engineering ,Wireless ,Antenna (radio) ,Underwater ,communication system ,business ,Engineering(all) - Abstract
The system uses the ultra-low power MSP430F449 MCU as the control core, and uses the infrared wireless communication, achieving a simple underwater wireless communication. The entire system consists of 3 parts, the land-based unit, the electrical unit and the submarine model. The land-based unit uses the ASK modulation to achieve wireless communication with the submarine model. The submarine model receives and decodes signals, then communicates with model unit via infrared light waves .The motor unit receives the infrared signals and keeps the floating and diving of the submarine model by controlling the suspension. The system realizes the controlling of the submarine model to achieve various forms of movement when the antenna is 3 meters above the water. The distance error, time error and speed error all meet the requirements .The whole system operates simply and functions well.
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- 2011
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42. Corrigendum: Molecular identification of species of Physalis (Solanaceae) using a candidate DNA barcode: the chloroplast psbA–trnH intergenic region
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Mengying Jiang, Yujia Zhu, Huizhong Wang, Shangguo Feng, Hongfen Wang, and Kaili Jiao
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Genetics ,biology ,Psba trnh ,General Medicine ,biology.organism_classification ,DNA barcoding ,Chloroplast ,Intergenic region ,Physalis ,Molecular Biology ,Solanaceae ,Biotechnology ,Molecular identification - Published
- 2018
43. Development of SSR Markers and Assessment of Genetic Diversity in Medicinal Chrysanthemum morifolium Cultivars.
- Author
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Shangguo Feng, Renfeng He, Jiangjie Lu, Mengying Jiang, Xiaoxia Shen, Yan Jiang, Zhi'an Wang, and Huizhong Wang
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GENETIC research ,CHRYSANTHEMUM morifolium - Abstract
Chrysanthemum morifolium, is a well-known flowering plant worldwide, and has a high commercial, floricultural, and medicinal value. In this study, simple-sequence repeat (SSR) markers were generated from EST datasets and were applied to assess the genetic diversity among 32 cultivars. A total of 218 in silico SSR loci were identified from 7300 C. morifolium ESTs retrieved from GenBank. Of all SSR loci, 61.47% of them (134) were hexa-nucleotide repeats, followed by tri-nucleotide repeats (17.89%), di-nucleotide repeats (12.39%), tetra-nucleotide repeats (4.13%), and penta-nucleotide repeats (4.13%). In this study, 17 novel EST-SSR markers were verified. Along with 38 SSR markers reported previously, 55 C. morifolium SSR markers were selected for further genetic diversity analysis. PCR amplification of these EST-SSRs produced 1319 fragments, 1306 of which showed polymorphism. The average polymorphism information content of the SSR primer pairs was 0.972 (0.938-0.993), which showed high genetic diversity among C. morifolium cultivars. Based on SSR markers, 32 C. morifolium cultivars were separated into two main groups by partitioning of the clusters using the unweighted pair group method with arithmetic mean dendrogram, which was further supported by a principal coordinate analysis plot. Phylogenetic relationship among C. morifolium cultivars as revealed by SSR markers was highly consistent with the classification of medicinal C. morifolium populations according to their origin and ecological distribution. Our results demonstrated that SSR markers were highly reproducible and informative, and could be used to evaluate genetic diversity and relationships among medicinal C. morifolium cultivars. [ABSTRACT FROM AUTHOR]
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- 2016
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44. Bio-upcycling of polyethylene terephthalate
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Eric Pollet, Shane T. Kenny, Katja Schröder, Tanja Narancic, Mengying Jiang, Wolfgang Zimmermann, Kevin E. O’Connor, Nick Wierckx, Till Tiso, Rémi Perrin, Niall Beagan, Luc Avérous, Lars M. Blank, Annett Honak, Ren Wei, Laboratoire des Matériaux, Surfaces et Procédés pour la Catalyse (LMSPC), Institut de chimie et procédés pour l'énergie, l'environnement et la santé (ICPEES), Université de Strasbourg (UNISTRA)-Matériaux et nanosciences d'Alsace (FMNGE), Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Matériaux et nanosciences d'Alsace (FMNGE), and Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Institut de Chimie du CNRS (INC)-Université de Strasbourg (UNISTRA)-Université de Haute-Alsace (UHA) Mulhouse - Colmar (Université de Haute-Alsace (UHA))-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
- Subjects
0303 health sciences ,Plastic recycling ,030306 microbiology ,Bioplastic ,Polyhydroxyalkanoates ,12. Responsible consumption ,Polyester ,03 medical and health sciences ,chemistry.chemical_compound ,Hydrolysis ,Monomer ,[CHIM.POLY]Chemical Sciences/Polymers ,chemistry ,Chemical engineering ,Polyethylene terephthalate ,Ethylene glycol ,030304 developmental biology - Abstract
Over 359 million tons of plastics were produced worldwide in 2018, with significant growth expected in the near future, resulting in the global challenge of end-of-life management. The recent identification of enzymes that degrade plastics previously considered non-biodegradable opens up opportunities to steer the plastic recycling industry into the realm of biotechnology. Here, we present the sequential conversion of polyethylene terephthalate (PET) into two types of bioplastics: a medium chain-length polyhydroxyalkanoate (PHA) and a novel bio-based poly(amide urethane) (bio-PU). PET films were hydrolyzed by a thermostable polyester hydrolase yielding 100% terephthalate and ethylene glycol. A terephthalate-degrading Pseudomonas was evolved to also metabolize ethylene glycol and subsequently produced PHA. The strain was further modified to secrete hydroxyalkanoyloxy-alkanoates (HAAs), which were used as monomers for the chemo-catalytic synthesis of bio-PU. In short, we present a novel value-chain for PET upcycling, adding technological flexibility to the global challenge of end-of-life management of plastics.Graphical abstract
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