47 results on '"Matthews, Allison"'
Search Results
2. Human germline heterozygous gain-of-function STAT6 variants cause severe allergic disease
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Sharma, Mehul, Leung, Daniel, Momenilandi, Mana, Jones, Lauren CW, Pacillo, Lucia, James, Alyssa E, Murrell, Jill R, Delafontaine, Selket, Maimaris, Jesmeen, Vaseghi-Shanjani, Maryam, Del Bel, Kate L, Lu, Henry Y, Chua, Gilbert T, Di Cesare, Silvia, Fornes, Oriol, Liu, Zhongyi, Di Matteo, Gigliola, Fu, Maggie P, Amodio, Donato, San Tam, Issan Yee, Chan, Gavin Shueng Wai, Sharma, Ashish A, Dalmann, Joshua, van der Lee, Robin, Blanchard-Rohner, Géraldine, Lin, Susan, Philippot, Quentin, Richmond, Phillip A, Lee, Jessica J, Matthews, Allison, Seear, Michael, Turvey, Alexandra K, Philips, Rachael L, Brown-Whitehorn, Terri F, Gray, Christopher J, Izumi, Kosuke, Treat, James R, Wood, Kathleen H, Lack, Justin, Khleborodova, Asya, Niemela, Julie E, Yang, Xingtian, Liang, Rui, Kui, Lin, Wong, Christina Sze Man, Poon, Grace Wing Kit, Hoischen, Alexander, van der Made, Caspar I, Yang, Jing, Chan, Koon Wing, Da Rosa Duque, Jaime Sou, Lee, Pamela Pui Wah, Ho, Marco Hok Kung, Chung, Brian Hon Yin, Le, Huong Thi Minh, Yang, Wanling, Rohani, Pejman, Fouladvand, Ali, Rokni-Zadeh, Hassan, Changi-Ashtiani, Majid, Miryounesi, Mohammad, Puel, Anne, Shahrooei, Mohammad, Finocchi, Andrea, Rossi, Paolo, Rivalta, Beatrice, Cifaldi, Cristina, Novelli, Antonio, Passarelli, Chiara, Arasi, Stefania, Bullens, Dominique, Sauer, Kate, Claeys, Tania, Biggs, Catherine M, Morris, Emma C, Rosenzweig, Sergio D, O’Shea, John J, Wasserman, Wyeth W, Bedford, H Melanie, van Karnebeek, Clara DM, Palma, Paolo, Burns, Siobhan O, Meyts, Isabelle, Casanova, Jean-Laurent, Lyons, Jonathan J, Parvaneh, Nima, Van Nguyen, Anh Thi, Cancrini, Caterina, Heimall, Jennifer, Ahmed, Hanan, McKinnon, Margaret L, Lau, Yu Lung, Béziat, Vivien, and Turvey, Stuart E
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Genetics ,Rare Diseases ,Clinical Research ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system ,Humans ,STAT6 Transcription Factor ,Gain of Function Mutation ,Asthma ,Food Hypersensitivity ,Immunoglobulin E ,Medical and Health Sciences ,Immunology - Abstract
STAT6 (signal transducer and activator of transcription 6) is a transcription factor that plays a central role in the pathophysiology of allergic inflammation. We have identified 16 patients from 10 families spanning three continents with a profound phenotype of early-life onset allergic immune dysregulation, widespread treatment-resistant atopic dermatitis, hypereosinophilia with esosinophilic gastrointestinal disease, asthma, elevated serum IgE, IgE-mediated food allergies, and anaphylaxis. The cases were either sporadic (seven kindreds) or followed an autosomal dominant inheritance pattern (three kindreds). All patients carried monoallelic rare variants in STAT6 and functional studies established their gain-of-function (GOF) phenotype with sustained STAT6 phosphorylation, increased STAT6 target gene expression, and TH2 skewing. Precision treatment with the anti-IL-4Rα antibody, dupilumab, was highly effective improving both clinical manifestations and immunological biomarkers. This study identifies heterozygous GOF variants in STAT6 as a novel autosomal dominant allergic disorder. We anticipate that our discovery of multiple kindreds with germline STAT6 GOF variants will facilitate the recognition of more affected individuals and the full definition of this new primary atopic disorder.
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- 2023
3. Who’s afraid of the X? Incorporating the X and Y chromosomes into the analysis of DNA methylation array data
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Inkster, Amy M., Wong, Martin T., Matthews, Allison M., Brown, Carolyn J., and Robinson, Wendy P.
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- 2023
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4. Simultaneous Measurements of Star Formation and Supermassive Black Hole Growth in Galaxies
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Pope, Alexandra, Armus, Lee, Murphy, Eric, Aalto, Susanne, Alexander, David, Appleton, Philip, Barger, Amy, Bradford, Matt, Capak, Peter, Casey, Caitlin, Charmandaris, Vassilis, Chary, Ranga, Cooray, Asantha, Condon, Jim, Santos, Tanio Diaz, Dickinson, Mark, Farrah, Duncan, Ferkinhoff, Carl, Grogin, Norman, Hickox, Ryan, Kirkpatrick, Allison, Kotaro, Kohno, Matthews, Allison, Narayanan, Desika, Riechers, Dominik, Sajina, Anna, Sargent, Mark, Scott, Douglas, Smith, J. D., Stacey, Gordon, Veilleux, Sylvain, and Vieira, Joaquin
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Astrophysics - Astrophysics of Galaxies - Abstract
Galaxies grow their supermassive black holes in concert with their stars, although the relationship between these major galactic components is poorly understood. Observations of the cosmic growth of stars and black holes in galaxies suffer from disjoint samples and the strong effects of dust attenuation. The thermal infrared holds incredible potential for simultaneously measuring both the star formation and black hole accretion rates in large samples of galaxies covering a wide range of physical conditions. Spitzer demonstrated this potential at low redshift, and by observing some of the most luminous galaxies at z~2. JWST will apply these methods to normal galaxies at these epochs, but will not be able to generate large spectroscopic samples or access the thermal infrared at high-redshift. An order of magnitude gap in our wavelength coverage will persist between JWST and ALMA. A large, cold infrared telescope can fill this gap to determine when (in cosmic time), and where (within the cosmic web), stars and black holes co-evolve, by measuring these processes simultaneously in statistically complete and unbiased samples of galaxies to z>8. A next-generation radio interferometer will have the resolution and sensitivity to measure star-formation and nuclear accretion in even the dustiest galaxies. Together, the thermal infrared and radio can uniquely determine how stars and supermassive blackholes co-evolve in galaxies over cosmic time., Comment: Science White paper submitted to Astro2020 Decadal Survey
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- 2019
5. Resolved Star Formation Efficiency in the Antennae Galaxies
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Matthews, Allison M., Johnson, Kelsey E., Whitmore, Bradley C., Brogan, Crystal L., Leroy, Adam K., and Indebetouw, Remy
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Astrophysics - Astrophysics of Galaxies - Abstract
We use Atacama Large Millimeter Array CO(3-2) observations in conjunction with optical observations from the Hubble Space Telescope to determine the ratio of stellar to gas mass for regions in the Antennae Galaxies. We adopt the term "instantaneous mass ratio" IMR(t) = M$_{stars}$/(M$_{gas}$ +M$_{stars}$), that is equivalent to the star formation efficiency for an idealized system at t = 0. We use two complementary approaches to determining the IMR(t) based on 1) the enclosed stellar and molecular mass within circular apertures centered on optically-identified clusters, and 2) a tessellation algorithm that defines regions based on CO emission. We find that only a small number of clusters appear to have IMR(0) = SFE > 0.2, which suggests that only a small fraction of these clusters will remain bound. The results suggest that by ages of $10^{6.7}$ years, some clusters will have lost all of their associated molecular gas, and by $10^{7.5}$ years this is true for the majority of clusters. There appears to be slight dependence of the IMR(t) on the CO surface brightness, which could support the idea that dense molecular environments are more likely to form bound clusters. However, the IMR(t) appears to have a strong dependence on extinction, which likely traces the evolutionary state of clusters., Comment: 17 pages, 10 figures, accepted for publication in ApJ
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- 2018
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6. The NANOGrav 11-year Data Set: High-precision timing of 45 Millisecond Pulsars
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Arzoumanian, Zaven, Brazier, Adam, Burke-Spolaor, Sarah, Chamberlin, Sydney, Chatterjee, Shami, Christy, Brian, Cordes, James M., Cornish, Neil J., Crawford, Fronefield, Cromartie, H. Thankful, Crowter, Kathryn, DeCesar, Megan E., Demorest, Paul B., Dolch, Timothy, Ellis, Justin A., Ferdman, Robert D., Ferrara, Elizabeth C., Fonseca, Emmanuel, Garver-Daniels, Nathan, Gentile, Peter A., Halmrast, Daniel, Huerta, Eliu, Jenet, Fredrick A., Jessup, Cody, Jones, Glenn, Jones, Megan L., Kaplan, David L., Lam, Michael T., Lazio, T. Joseph W., Levin, Lina, Lommen, Andrea, Lorimer, Duncan R., Luo, Jing, Lynch, Ryan S., Madison, Dustin, Matthews, Allison M., McLaughlin, Maura A., McWilliams, Sean T., Mingarelli, Chiara, Ng, Cherry, Nice, David J., Pennucci, Timothy T., Ransom, Scott M., Ray, Paul S., Siemens, Xavier, Simon, Joseph, Spiewak, Renee, Stairs, Ingrid H., Stinebring, Daniel R., Stovall, Kevin, Swiggum, Joseph K., Taylor, Stephen R., Vallisneri, Michele, van Haasteren, Rutger, Vigeland, Sarah J., and Zhu, Weiwei
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Astrophysics - High Energy Astrophysical Phenomena ,Astrophysics - Instrumentation and Methods for Astrophysics - Abstract
We present high-precision timing data over time spans of up to 11 years for 45 millisecond pulsars observed as part of the North American Nanohertz Observatory for Gravitational Waves (NANOGrav) project, aimed at detecting and characterizing low-frequency gravitational waves. The pulsars were observed with the Arecibo Observatory and/or the Green Bank Telescope at frequencies ranging from 327 MHz to 2.3 GHz. Most pulsars were observed with approximately monthly cadence, with six high--timing-precision pulsars observed weekly, and all were observed at widely separated frequencies at each observing epoch in order to fit for time-variable dispersion delays. We describe our methods for data processing, time-of-arrival (TOA) calculation, and the implementation of a new, automated method for removing outlier TOAs. We fit a timing model for each pulsar that includes spin, astrometric, and, if necessary, binary parameters, in addition to time-variable dispersion delays and parameters that quantify pulse-profile evolution with frequency. The new timing solutions provide three new parallax measurements, two new Shapiro delay measurements, and two new measurements of large orbital-period variations. We fit models that characterize sources of noise for each pulsar. We find that 11 pulsars show significant red noise, with generally smaller spectral indices than typically measured for non-recycled pulsars, possibly suggesting a different origin. Future papers will use these data to constrain or detect the signatures of gravitational-wave signals., Comment: Published in the Astrophysical Journal Supplement Series
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- 2017
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7. Disentangling the Galactic Halo with APOGEE: I. Chemical and Kinematical Investigation of Distinct Metal-Poor Populations
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Hayes, Christian R., Majewski, Steven R., Shetrone, Matthew, Fernández-Alvar, Emma, Prieto, Carlos Allende, Schuster, William J., Carigi, Leticia, Cunha, Katia, Smith, Verne V., Sobeck, Jennifer, Almeida, Andres, Beers, Timothy C., Carrera, Ricardo, Fernández-Trincado, J. G., García-Hernández, D. A., Geisler, Doug, Lane, Richard R., Lucatello, Sara, Matthews, Allison M., Minniti, Dante, Nitschelm, Christian, Tang, Baitian, Tissera, Patricia B., and Zamora, Olga
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Astrophysics - Astrophysics of Galaxies - Abstract
We find two chemically distinct populations separated relatively cleanly in the [Fe/H] - [Mg/Fe] plane, but also distinguished in other chemical planes, among metal-poor stars (primarily with metallicities [Fe/H] $< -0.9$) observed by the Apache Point Observatory Galactic Evolution Experiment (APOGEE) and analyzed for Data Release 13 (DR13) of the Sloan Digital Sky Survey. These two stellar populations show the most significant differences in their [X/Fe] ratios for the $\alpha$-elements, C+N, Al, and Ni. In addition to these populations having differing chemistry, the low metallicity high-Mg population (which we denote the HMg population) exhibits a significant net Galactic rotation, whereas the low-Mg population (or LMg population) has halo-like kinematics with little to no net rotation. Based on its properties, the origin of the LMg population is likely as an accreted population of stars. The HMg population shows chemistry (and to an extent kinematics) similar to the thick disk, and is likely associated with $\it in$ $\it situ$ formation. The distinction between the LMg and HMg populations mimics the differences between the populations of low- and high-$\alpha$ halo stars found in previous studies, suggesting that these are samples of the same two populations., Comment: 21 pages, 13 figures, 1 table. Accepted for publishing in The Astrophysical Journal
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- 2017
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8. First Results from the Dark Skies, Bright Kids Astronomy Club Draw-a-Scientist Test
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Hayes, Christian R., Matthews, Allison M., Song, Yiqing, Linden, Sean T., Wilson, Robert F., Finn, Molly, Huang, Xiaoshan, Johnson, Kelsey E., McAlister, Anne M., Prager, Brian, Seifert, Richard, Liss, Sandra E., Burkhardt, Andrew M., and Troup, Nicholas
- Abstract
This paper presents the first results from draw-a-scientist tests (DASTs) over five years that were used to measure the effect of 8-10 week long astronomy clubs and week long summer camps on 3rd-5th grade elementary school students' perceptions of scientists. We facilitated these DASTs prior to these clubs or camps, which provide a baseline for a student's initial conception of scientists, and once at the end, to determine whether their conception changed, possibly as a result of their involvement. In total we analyze 89 pairs of DASTs using a numerical grading scheme designed to quantify the presence of various features in the drawn scientist and their activities. We find that there is a gender imbalance in both the pre- and postclub drawings, with only 32% and 35%, respectively, of students drawing female scientists. We also find that a third to a half of the scientists have a stereotypical appearance and/or are performing stereotypical activities. Although we find insignificant changes (<5%) in most categories, we do find an 8% increase in the number of scientists that have a stereotypical appearance, which is worth following up, but a significant 12% decrease in the number of scientists who are performing stereotypical activities. In addition, we present some possible improvements to implementing DASTs and discuss other possible assessments that could provide a more direct method of gauging the effect of these astronomy clubs or camps.
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- 2020
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9. The NANOGrav Nine-year Data Set: Astrometric Measurements of 37 Millisecond Pulsars
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Matthews, Allison M., Nice, David J., Fonseca, Emmanuel, Arzoumanian, Zaven, Crowter, Kathryn, Demorest, Paul B., Dolch, Timothy, Ellis, Justin A., Ferdman, Robert D., Gonzalez, Marjorie E., Jones, Glenn, Jones, Megan L., Lam, Michael T., Levin, Lina, McLaughlin, Maura A., Pennucci, Timothy T., Ransom, Scott M., Stairs, Ingrid H., Stovall, Kevin, Swiggum, Joseph K., and Zhu, Weiwei
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Astrophysics - Astrophysics of Galaxies ,Astrophysics - High Energy Astrophysical Phenomena - Abstract
Using the nine-year radio-pulsar timing data set from the North American Nanohertz Observatory for Gravitational Waves (NANOGrav), collected at Arecibo Observatory and the Green Bank Telescope, we have measured the positions, proper motions, and parallaxes for 37 millisecond pulsars. We report twelve significant parallax measurements and distance measurements, and eighteen lower limits on distance. We compare these measurements to distances predicted by the NE2001 interstellar electron density model and find them to be in general agreement. We use measured orbital-decay rates and spin-down rates to confirm two of the parallax distances and to place distance upper limits on other sources; these distance limits agree with the parallax distances with one exception, PSR J1024-0719, which we discuss at length. Using the proper motions of the 37 NANOGrav pulsars in combination with other published measurements, we calculate the velocity dispersion of the millisecond pulsar population in Galactocentric coordinates. We find the radial, azimuthal, and perpendicular dispersions to be 46, 40, and 24 km s-1, respectively, in a model that allows for high-velocity outliers; or 81, 58, and 62 km s-1 for the full population. These velocity dispersions are far smaller than those of the canonical pulsar population, and are similar to older Galactic disk populations. This suggests that millisecond pulsar velocities are largely attributable to their being an old population rather than being artifacts of their birth and evolution as neutron star binary systems. The components of these velocity dispersions follow similar proportions to other Galactic populations, suggesting that our results are not biased by selection effects., Comment: Accepted by ApJ
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- 2015
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10. A cross-cohort analysis of autosomal DNA methylation sex differences in the term placenta
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Inkster, Amy M., Yuan, Victor, Konwar, Chaini, Matthews, Allison M., Brown, Carolyn J., and Robinson, Wendy P.
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- 2021
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11. Detouring civil liberties? Drug-driving laws in Australia.
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PRICHARD, Jeremy, Matthews, Allison, Bruno, Raimondo, RAYMENT, Katherine, and James, Helen
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- 2010
12. Identification of Streptococcus pneumoniae genes associated with hypothiocyanous acid tolerance through genome-wide screening
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Shearer, Heather L., primary, Pace, Paul E., additional, Smith, Leah M., additional, Fineran, Peter C., additional, Matthews, Allison J., additional, Camilli, Andrew, additional, Dickerhof, Nina, additional, and Hampton, Mark B., additional
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- 2023
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13. Atypical cerebral palsy: genomics analysis enables precision medicine
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Matthews, Allison M., Blydt-Hansen, Ingrid, Al-Jabri, Basmah, Andersen, John, Tarailo-Graovac, Maja, Price, Magda, Selby, Katherine, Demos, Michelle, Connolly, Mary, Drögemoller, Britt, Shyr, Casper, Mwenifumbo, Jill, Elliott, Alison M., Lee, Jessica, Ghani, Aisha, Stöckler, Sylvia, Salvarinova, Ramona, Vallance, Hilary, Sinclair, Graham, Ross, Colin J., Wasserman, Wyeth W., McKinnon, Margaret L., Horvath, Gabriella A., Goez, Helly, van Karnebeek, Clara D., and On behalf of TIDE BC, United for Metabolic Diseases and the CAUSES Study
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- 2019
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14. The NANOGrav 11-year Data Set: High-Precision Timing of 45 Millisecond Pulsars
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Arzoumanian, Zaven, Brazier, Adam, Burke-Spolaor, Sarah, Chamberlin, Sydney, Chatterjee, Shami, Christy, Brian, Cordes, James M, Cornish, Neil J, Crawford, Fronefield, Cromartie, H. Thankful, Crowter, Kathryn, DeCesar, Megan E, Demorest, Paul B, Dolch, Timothy, Ellis, Justin A, Ferdman, Robert D, Ferrara, Elizabeth C, Fonseca, Emmanuel, Garver-Daniels, Nathan, Gentile, Peter A, Halmrast, Daniel, Huerta, E. A, Jenet, Fredrick A, Jessup, Cody, Jones, Glenn, Jones, Megan L, Kaplan, David L, Lam, Michael T, Lazio, T. Joseph W, Levin, Lina, Lommen, Andrea, Lorimer, Duncan R, Luo, Jing, Lynch, Ryan S, Madison, Dustin, Matthews, Allison M, McLaughlin, Maura A, McWilliams, Sean T, Mingarelli, Chiara, Ng, Cherry, Nice, David J, Pennucci, Timothy T, Ransom, Scott M, Ray, Paul S, Siemens, Xavier, Simon, Joseph, Spiewak, Renée, Stairs, Ingrid H, Stinebring, Daniel R, Stovall, Kevin, Swiggum, Joseph K, Taylor, Stephen R, Vallisneri, Michele, van Haasteren, Rutger, Vigeland, Sarah J, and Zhu, Weiwei
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Astrophysics - Abstract
We present high-precision timing data over time spans of up to 11 years for 45 millisecond pulsars observed as part of the North American Nanohertz Observatory for Gravitational Waves (NANOGrav) project, aimed at detecting and characterizing low-frequency gravitational waves. The pulsars were observed with the Arecibo Observatory and/or the Green Bank Telescope at frequencies ranging from 327 MHz to 2.3 GHz. Most pulsars were observed with approximately monthly cadence, and six high-timing-precision pulsars were observed weekly. All were observed at widely separated frequencies at each observing epoch in order to fit for time-variable dispersion delays. We describe our methods for data processing, time-of-arrival (TOA) calculation, and the implementation of a new, automated method for removing outlier TOAs. We fit a timing model for each pulsar that includes spin, astrometric, and (for binary pulsars) orbital parameters; time-variable dispersion delays; and parameters that quantify pulse-profile evolution with frequency. The timing solutions provide three new parallax measurements, two new Shapiro delay measurements, and two new measurements of significant orbital-period variations. We fit models that characterize sources of noise for each pulsar. We find that 11 pulsars show significant red noise, with generally smaller spectral indices than typically measured for non-recycled pulsars, possibly suggesting a different origin. A companion paper uses these data to constrain the strength of the gravitational-wave background
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- 2018
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15. Genome-wide sequencing and the clinical diagnosis of genetic disease: The CAUSES study
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Elliott, Alison M., primary, Adam, Shelin, additional, du Souich, Christèle, additional, Lehman, Anna, additional, Nelson, Tanya N., additional, van Karnebeek, Clara, additional, Alderman, Emily, additional, Armstrong, Linlea, additional, Aubertin, Gudrun, additional, Blood, Katherine, additional, Boelman, Cyrus, additional, Boerkoel, Cornelius, additional, Bretherick, Karla, additional, Brown, Lindsay, additional, Chijiwa, Chieko, additional, Clarke, Lorne, additional, Couse, Madeline, additional, Creighton, Susan, additional, Watts-Dickens, Abby, additional, Gibson, William T., additional, Gill, Harinder, additional, Tarailo-Graovac, Maja, additional, Hamilton, Sara, additional, Heran, Harindar, additional, Horvath, Gabriella, additional, Huang, Lijia, additional, Hulait, Gurdip K., additional, Koehn, David, additional, Lee, Hyun Kyung, additional, Lewis, Suzanne, additional, Lopez, Elena, additional, Louie, Kristal, additional, Niederhoffer, Karen, additional, Matthews, Allison, additional, Meagher, Kirsten, additional, Peng, Junran J., additional, Patel, Millan S., additional, Race, Simone, additional, Richmond, Phillip, additional, Rupps, Rosemarie, additional, Salvarinova, Ramona, additional, Seath, Kimberly, additional, Selby, Kathryn, additional, Steinraths, Michelle, additional, Stockler, Sylvia, additional, Tang, Kaoru, additional, Tyson, Christine, additional, van Allen, Margot, additional, Wasserman, Wyeth, additional, Mwenifumbo, Jill, additional, and Friedman, Jan M., additional
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- 2022
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16. Translation of animal endocannabinoid models of PTSD mechanisms to humans: Where to next?
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Ney, Luke J., Crombie, Kevin M., Mayo, Leah M., Felmingham, Kim L., Bowser, Tim, Matthews, Allison, Ney, Luke J., Crombie, Kevin M., Mayo, Leah M., Felmingham, Kim L., Bowser, Tim, and Matthews, Allison
- Abstract
The endocannabinoid system is known to be involved in mechanisms relevant to PTSD aetiology and maintenance, though this understanding is mostly based on animal models of the disorder. Here we review how human paradigms can successfully translate animal findings to human subjects, with the view that substantially increased insight into the effect of endocannabinoid signalling on stress responding, emotional and intrusive memories, and fear extinction can be gained using modern paradigms and methods for assessing the state of the endocannabinoid system in PTSD.
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- 2022
17. A Tn-seq Screen of Streptococcus pneumoniae Uncovers DNA Repair as the Major Pathway for Desiccation Tolerance and Transmission
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Matthews, Allison J., primary, Rowe, Hannah M., additional, Rosch, Jason W., additional, and Camilli, Andrew, additional
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- 2021
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18. Additional file 1 of A cross-cohort analysis of autosomal DNA methylation sex differences in the term placenta
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Inkster, Amy M., Yuan, Victor, Konwar, Chaini, Matthews, Allison M., Brown, Carolyn J., and Robinson, Wendy P.
- Abstract
Additional file 1: Supplementary Figures. Title: Supplementary figure files. Description: Supplementary figures 1-4 with corresponding titles and figure captions.
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- 2021
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19. The effects of acute stress on attentional networks and working memory in females
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Stone, Caleb, Ney, Luke, Felmingham, Kim, Nichols, David, Matthews, Allison, Stone, Caleb, Ney, Luke, Felmingham, Kim, Nichols, David, and Matthews, Allison
- Abstract
Neurobiological models indicate that acute stress facilitates bottom-up stimulus processing while impairing top-down executive control. To test this hypothesis, the present study investigated the effects of acute stress on behavioural and electrophysiological measures of human attentional networks, and behavioural measures of working memory. Forty-five female participants (Mage = 22.1, SD = 2.4) performed the Attention Network Test (ANT) and the n-back task before and after the Maastricht Acute Stress Test (MAST; n = 23) or a non-stressful MAST-placebo (n = 22). Subjective distress ratings and salivary cortisol concentrations revealed a successful stress induction. Increased salivary cortisol at baseline was associated with slower reaction times across both tasks, suggesting a general detrimental effect of cortisol on cognitive functioning. Despite these findings, however, the hypothesised effects of the acute stress manipulation were not found for either task. Supplementary analyses indicated that these results were unrelated to the magnitude or duration of the stress response. Our results therefore suggest the standard version of the ANT may be insensitive to the effects of acute stress, and that higher cognitive loads may be necessary to observe stress effects on the n-back task.
- Published
- 2021
20. Chloroform-based liquid-liquid extraction and LC–MS/MS quantification of endocannabinoids, cortisol and progesterone in human hair
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Ney, Luke J., Felmingham, Kim L., Bruno, Raimondo, Matthews, Allison, Nichols, David S., Ney, Luke J., Felmingham, Kim L., Bruno, Raimondo, Matthews, Allison, and Nichols, David S.
- Abstract
Understanding the role of endogenous cannabinoids (endocannabinoids) in disease is of increasing importance. However, tools to investigate endocannabinoid levels in humans are limited. In the current study, we report a simplified sample preparation method for quantifying endocannabinoids and steroid hormones in hair using liquid-liquid extraction combined with ultra performance liquid chromatography coupled to tandem mass spectrometry. The fully validated method is at least R2 = 0.99 linear between 5 and 1,000 pg/mg for each analyte and the detection limits are at or below 0.50 pg/mg for cortisol, progesterone, oleoylethanolamide, and arachidonoyl ethanolamide, and 2.65 pg/mg for 2-arachidonoyl glycerol. Sequential extraction of hair samples revealed that multiple extractions may be required for quantitative recovery of steroids. However endogenous cannabinoids were efficiently recovered using a single sample extraction. The method was applied to a psychosocial stress study where participants provided samples of both hair and saliva. Endogenous hair arachidonoyl ethanolamide levels were negatively associated with resting, but not stressed, salivary cortisol levels in healthy participants. This simplified method enables the detailed study of hormonal and endocannabinoids in human hair with high sensitivity.
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- 2021
21. Endocannabinoid reactivity to acute stress: Investigation of the relationship between salivary and plasma levels
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Ney, Luke, Stone, Caleb, Nichols, David, Felmingham, Kim, Bruno, Raimondo, Matthews, Allison, Ney, Luke, Stone, Caleb, Nichols, David, Felmingham, Kim, Bruno, Raimondo, and Matthews, Allison
- Abstract
The endogenous cannabinoid (eCB) system has been shown in animal models to regulate the initiation and termination of central nervous responses to stress. In human studies, the role of peripherally measured eCBs is much less clear and the effect in salivary eCBs has not been studied. In this study, we use a novel method to quantify cortisol and eCBs arachidonoyl ethanolamide (AEA) and 2-arachidonoyl glycerol (2-AG) in human saliva, as well as in plasma samples. Forty-five females and 32 males completed a mixed physiological/psychosocial stress-induction study where saliva, and blood samples in males, were collected at baseline, immediately following, 30-minutes following, and 45-minutes following stress induction. Cortisol significantly increased after stress, but there were sex differences in the cortisol response to stress, with females having higher cortisol after stress compared to males. There was a significant increase in salivary levels of 2-AG immediately following stress induction, but no effect of AEA. Salivary AEA was higher in males compared to females. Surprisingly, there was no effect of stress on plasma AEA or 2-AG levels in the male cohort, though small effect sizes for 2-AG were observed, which is consistent with most other human literature. This study is the first to show that the eCB system is active in human saliva and is responsive to acute stress, possibly as part of the sympathetic nervous system response.
- Published
- 2021
22. BDNF genotype Val66Met interacts with acute plasma BDNF levels to predict fear extinction and recall
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Ney, Luke John, Matthews, Allison, Nicholson, Emma, Zuj, Daniel, Hsu, Chia Ming Ken, Steward, Trevor, Graham, Bronwyn, Harrison, Ben, Nichols, David, Felmingham, Kim, Ney, Luke John, Matthews, Allison, Nicholson, Emma, Zuj, Daniel, Hsu, Chia Ming Ken, Steward, Trevor, Graham, Bronwyn, Harrison, Ben, Nichols, David, and Felmingham, Kim
- Abstract
Brain-derived neurotropic factor (BDNF) is a potent regulator of memory processes and is believed to influence the consolidation of fear extinction memories. No previous human study has tested the effect of unstimulated BDNF on fear extinction recall, and no study has tested the association between plasma BDNF levels and psychophysiological responding during an extinction paradigm. We tested the association between fear responses during a 2-day differential conditioning, extinction and extinction recall paradigm and Val66Met genotype in a group of healthy participants (N = 191). There were no group differences during habituation or acquisition. Met allele carriers compared to Val homozygotes displayed higher responses to the CS + compared to the CS- during extinction learning and had higher responding to both the CS+ and CS- during extinction recall. Plasma levels of BDNF protein that were collected in a sub-sample of the group (n = 56) moderated the effect of Met allele presence, such that lower BDNF level was associated with higher skin conductance response in the Met but not Val group to the CS+ during extinction learning and to both the CS+ and CS- during extinction recall. The current results extend previous observations of a Val66Met effect during fear extinction learning to extinction recall and show for the first time that these effects are moderated by plasma BDNF level.
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- 2021
23. Dopamine, endocannabinoids and their interaction in fear extinction and negative affect in PTSD
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Ney, L.J., Akhurst, Jane, Bruno, R., Laing, P.A.F., Matthews, Allison, Felmingham, K.L., Ney, L.J., Akhurst, Jane, Bruno, R., Laing, P.A.F., Matthews, Allison, and Felmingham, K.L.
- Abstract
There currently exist few frameworks for common neurobiology between reexperiencing and negative cognitions and mood symptoms of PTSD. Adopting a dopaminergic framework for PTSD unites many aspects of unique symptom clusters, and this approach also links PTSD symptomology to common comorbidities with a common neurobiological deficiency. Here we review the dopamine literature and incorporate it with a growing field of research that describes both the contribution of endocannabinoids to fear extinction and PTSD, as well as the interactions between dopaminergic and endocannabinoid systems underlying this disorder. Based on current evidence, we outline an early, preliminary model that links re-experiencing and negative cognitions and mood in PTSD by invoking the interaction between endocannabinoid and dopaminergic signalling in the brain. These interactions between PTSD, dopamine and endocannabinoids may have implications for future therapies for treatment-resistant and comorbid PTSD patients.
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- 2021
24. Cannabinoid polymorphisms interact with plasma endocannabinoid levels to predict fear extinction learning
- Author
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Ney, Luke J, Matthews, Allison, Hsu, Chia‐Ming Ken, Zuj, Daniel V., Nicholson, Emma, Steward, Trevor, Nichols, David, Graham, Bronwyn, Harrison, Ben, Bruno, Raimondo, Felmingham, Kim, Ney, Luke J, Matthews, Allison, Hsu, Chia‐Ming Ken, Zuj, Daniel V., Nicholson, Emma, Steward, Trevor, Nichols, David, Graham, Bronwyn, Harrison, Ben, Bruno, Raimondo, and Felmingham, Kim
- Abstract
Background: The endocannabinoid system is gaining increasing attention as a favorable target for improving posttraumatic stress disorder (PTSD) treatments. Exposure therapy is the gold-standard treatment for PTSD, and fear extinction learning is a key concept underlying successful exposure. Methods: This study examined the role of genetic endocannabinoid polymorphisms in a fear extinction paradigm with PTSD compared to healthy participants (N = 220). Participants provided saliva for genotyping, completed a fear conditioning and extinction task, with blood samples taken before and after the task (n = 57). Skin conductance was the outcome and was analyzed using mixed models. Results: Results for cannabinoid receptor type 1 polymorphisms suggested that minor alleles of rs2180619 and rs1049353 were associated with poorer extinction learning in PTSD participants. The minor allele of the fatty acid amide hydrolase (FAAH) polymorphism rs324420 was associated with worse extinction in PTSD participants. Subanalysis of healthy participants (n = 57) showed the FAAH rs324420 genotype effect was dependent on plasma arachidonoyl ethanolamide (AEA) level, but not oleoylethanolamide or 2-arachidonoyl glycerol. Specifically, higher but not lower AEA levels in conjunction with the minor allele of FAAH rs324420 were associated with better extinction learning. Conclusions: These findings provide translational evidence that cannabinoid receptor 1 and AEA are involved in extinction learning in humans. FAAH rs324420's effect on fear extinction is moderated by AEA plasma level in healthy controls. These findings imply that FAAH inhibitors may be effective for targeting anxiety in PTSD, but this effect needs to be explored further in clinical populations.
- Published
- 2021
25. Simultaneous quantification of endocannabinoids, oleoylethanolamide and steroid hormones in human plasma and saliva
- Author
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Ney, L.J., Felmingham, K.L., Bruno, R., Matthews, Allison, Nichols, D.S., Ney, L.J., Felmingham, K.L., Bruno, R., Matthews, Allison, and Nichols, D.S.
- Abstract
Endogenous cannabinoids are an increasingly intriguing target for biological research, given the changing legal status of medicinal cannabinoid-based products throughout the world. However, studying the endogenous cannabinoid system is a relatively new field, with few research teams attempting to develop quantitative methods for these important modulatory analytes in human matrices, other than blood. Here we develop and validate simultaneous methods for quantifying arachidonoyl-ethanolamide, 2-arachidonoyl glycerol, oleoylethanolamide, cortisol and progesterone in human plasma and saliva using liquid–liquid extraction combined with ultra-high performance liquid chromatography coupled to tandem mass spectrometry. The method was fully validated over the linear concentration range 1–20 ng/mL for each analyte in plasma (R2 = 0.98–0.99) and saliva (R2 = 0.99). We find that salivary endogenous cannabinoids and cortisol are acutely responsive to exercise, suggesting that targeting the saliva system may present a convenient way for future research of endogenous cannabinoids. This finding also encourages a broader understanding of the endogenous cannabinoid system during stress responses, and our method may consequently lead to a better understanding of the role of endogenous cannabinoids in peripheral tissues.
- Published
- 2020
26. Brain-derived neurotropic factor and cortisol levels negatively predict working memory performance in healthy males
- Author
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Ney, Luke, Felmingham, Kim, Nichols, David S., Matthews, Allison, Ney, Luke, Felmingham, Kim, Nichols, David S., and Matthews, Allison
- Abstract
There is now significant literature suggesting that increasing brain-derived neurotropic factor (BDNF) signalling may improve memory-related disorders such as Alzheimer’s disease. However, the effects of BDNF on short-term and working memory are not clear and existing evidence is inconsistent. Here we measured plasma BDNF and salivary cortisol levels, as well as working memory, on an N-Back task before and after mixed psychosocial/physiological stress induction in healthy males (N = 29). Stress induction was associated with higher circulating cortisol, but not BDNF levels. Higher cortisol and BDNF levels were significantly associated with poorer accuracy before and after stress induction. There was also a significant interaction, such that higher BDNF was associated with a buffering effect on the negative association between high cortisol and working memory. Future studies should replicate this data in larger samples, with emphasis on cortisol/BDNF interactions in determining working memory performance.
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- 2020
27. Cannabinoid interventions for PTSD: Where to next?
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Ney, L.J., Matthews, Allison, Bruno, R., Felmingham, K.L., Ney, L.J., Matthews, Allison, Bruno, R., and Felmingham, K.L.
- Abstract
Cannabinoids are a promising method for pharmacological treatment of post-traumatic stress disorder (PTSD). Despite considerable research devoted to the effect of cannabinoid modulation on PTSD symptomology, there is not a currently agreed way by which the cannabinoid system should be targeted in humans. In this review, we present an overview of recent research identifying neurological pathways by which different cannabinoid-based treatments may exert their effects on PTSD symptomology. We evaluate the strengths and weaknesses of each of these different approaches, including recent challenges presented to favourable options such as fatty acid amide hydrolase (FAAH) inhibitors. This article makes the strengths and challenges of different potential cannabinoid treatments accessible to psychological researchers interested in cannabinoid therapeutics and aims to aid selection of appropriate tools for future clinical trials.
- Published
- 2019
28. Commentary on 'Sex differences in the effect of cannabinoid type 1 receptor deletion on locus coeruleus-norepinephrine neurons and corticotropin releasing factor-mediated responses'
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Ney, Luke John, Matthews, Allison, Bruno, Raimondo, Felmingham, Kim Louise, Ney, Luke John, Matthews, Allison, Bruno, Raimondo, and Felmingham, Kim Louise
- Published
- 2019
29. Modulation of the endocannabinoid system by sex hormones: Implications for posttraumatic stress disorder
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Ney, L.J., Matthews, Allison, Bruno, R., Felmingham, K.L., Ney, L.J., Matthews, Allison, Bruno, R., and Felmingham, K.L.
- Abstract
The endocannabinoid system is an increasingly recognised pharmacological target for treating stress and anxiety disorders, including post-traumatic stress disorder (PTSD). Recent preclinical developments have implicated the endocannabinoid system in stress responses, emotional memories and fear extinction, all critical to PTSD aetiology. However, preclinical research in endocannabinoid biology has neglected the influential role of sex hormone differences on PTSD symptomology, which is particularly important given that PTSD is twice as common in women as in men. In this review, we compile and consider the evidence that the endocannabinoid system is influenced by ovarian hormones, with application to stress disorders such as PTSD. It is clear that therapeutic modulation of the endocannabinoid system needs to be approached with awareness of ovarian hormonal influences, and knowledge of these influences may enhance treatment outcomes for female PTSD populations.
- Published
- 2018
30. Resolved Star Formation Efficiency in the Antennae Galaxies
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Matthews, Allison M., primary, Johnson, Kelsey E., additional, Whitmore, Bradley C., additional, Brogan, Crystal L., additional, Leroy, Adam K., additional, and Indebetouw, Remy, additional
- Published
- 2018
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31. Transcription and translation of the sigG gene is tuned for proper execution of the switch from early to late gene expression in the developing Bacillus subtilis spore
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Mearls, Elizabeth B., primary, Jackter, Jacquelin, additional, Colquhoun, Jennifer M., additional, Farmer, Veronica, additional, Matthews, Allison J., additional, Murphy, Laura S., additional, Fenton, Colleen, additional, and Camp, Amy H., additional
- Published
- 2018
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32. Disentangling the Galactic Halo with APOGEE. I. Chemical and Kinematical Investigation of Distinct Metal-poor Populations
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Hayes, Christian R., primary, Majewski, Steven R., additional, Shetrone, Matthew, additional, Fernández-Alvar, Emma, additional, Prieto, Carlos Allende, additional, Schuster, William J., additional, Carigi, Leticia, additional, Cunha, Katia, additional, Smith, Verne V., additional, Sobeck, Jennifer, additional, Almeida, Andres, additional, Beers, Timothy C., additional, Carrera, Ricardo, additional, Fernández-Trincado, J. G., additional, García-Hernández, D. A., additional, Geisler, Doug, additional, Lane, Richard R., additional, Lucatello, Sara, additional, Matthews, Allison M., additional, Minniti, Dante, additional, Nitschelm, Christian, additional, Tang, Baitian, additional, Tissera, Patricia B., additional, and Zamora, Olga, additional
- Published
- 2018
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33. Verbal Learning and Memory in Cannabis and Alcohol Users: An Event-Related Potential Investigation
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Smith, Janette L., primary, De Blasio, Frances M., additional, Iredale, Jaimi M., additional, Matthews, Allison J., additional, Bruno, Raimondo, additional, Dwyer, Michelle, additional, Batt, Tessa, additional, Fox, Allison M., additional, Solowij, Nadia, additional, and Mattick, Richard P., additional
- Published
- 2017
- Full Text
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34. Assessment of the ExAC data set for the presence of individuals with pathogenic genotypes implicated in severe Mendelian pediatric disorders
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Tarailo-Graovac, Maja, primary, Zhu, Jing Yun Alice, additional, Matthews, Allison, additional, van Karnebeek, Clara D M, additional, and Wasserman, Wyeth W, additional
- Published
- 2017
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35. Corrigendum to “Characterising dark net marketplace purchasers in a sample of regular psychostimulant users” [International Journal of Drug Policy 35 (2016) 32–37]
- Author
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Buskirk, Joe Van, Roxburgh, Amanda, Bruno, Raimondo, Naicker, Sundresan, Lenton, Simon, Sutherland, Rachel, Whittaker, Elizabeth, Sindicich, Natasha, Matthews, Allison, Butler, Kerryn, Burns, Lucinda, Buskirk, Joe Van, Roxburgh, Amanda, Bruno, Raimondo, Naicker, Sundresan, Lenton, Simon, Sutherland, Rachel, Whittaker, Elizabeth, Sindicich, Natasha, Matthews, Allison, Butler, Kerryn, and Burns, Lucinda
- Published
- 2017
36. Verbal learning and memory in cannabis and alcohol users: An event-related potential investigation
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Smith, Janette L, De Blasio, Frances M, Iredale, Jaimi, Matthews, Allison J, Bruno, Raimondo, Dwyer, Michelle, Batt, Tessa, Fox, Allison, Solowij, Nadia, Mattick, Richard P, Smith, Janette L, De Blasio, Frances M, Iredale, Jaimi, Matthews, Allison J, Bruno, Raimondo, Dwyer, Michelle, Batt, Tessa, Fox, Allison, Solowij, Nadia, and Mattick, Richard P
- Abstract
Aims: Long-term heavy use of cannabis and alcohol are known to be associated with memory impairments. In this study, we used event-related potentials to examine verbal learning and memory processing in a commonly used behavioral task. Method: We conducted two studies: first, a small pilot study of adolescent males, comprising 13 Drug-Naive Controls (DNC), 12 heavy drinkers (HD) and 8 cannabis users (CU). Second, a larger study of young adults, comprising 45 DNC (20 female), 39 HD (16 female), and 20 CU (9 female). In both studies, participants completed a modified verbal learning task (the Rey Auditory Verbal Learning Test, RAVLT) while brain electrical activity was recorded. ERPs were calculated for words which were subsequently remembered vs. those which were not remembered, and for presentations of learnt words, previously seen words, and new words in a subsequent recognition test. Pre-planned principal components analyses (PCA) were used to quantify the ERP components in these recall and recognition phases separately for each study. Results: Memory performance overall was slightly lower than published norms using the standardized RAVLT delivery, but was generally similar and showed the expected changes over trials. Few differences in performance were observed between groups; a notable exception was markedly poorer delayed recall in HD relative to DNC (Study 2). PCA identified components expected from prior research using other memory tasks. At encoding, there were no between-group differences in the usual P2 recall effect (larger for recalled than not-recalled words). However, alcohol-related differences were observed in a larger P540 (indexing recollection) in HD than DNC, and cannabis-related differences were observed in a smaller N340 (indexing familiarity) and a lack of previously seen > new words effect for P540 in Study 2. Conclusions: This study is the first examination of ERPs in the RAVLT in healthy control participants, as well as substance-using indiv
- Published
- 2017
37. Behavioural and ERP Correlates of Hypervigilance and Inhibitory Control in Spider Fear
- Author
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Williams Monique and Matthews Allison
- Subjects
Spider ,Attentional bias ,Hypervigilance ,Inhibitory postsynaptic potential ,Lateralization of brain function ,Behavioral Neuroscience ,Psychiatry and Mental health ,Electrophysiology ,Neuropsychology and Physiological Psychology ,Neurology ,Inhibitory control ,medicine ,Anxiety ,medicine.symptom ,Psychology ,Neuroscience ,psychological phenomena and processes ,Biological Psychiatry ,Cognitive psychology - Abstract
Attentional biases to threat are thought to arise from anxiety promoting automatic attentional processing in the form of hypervigilance, while disrupting voluntary attentional processes such as inhibitory control. There is little support for the latter in specific fear. The current study examined behavioural (RT and accuracy) and electrophysiological correlates of hypervigilance (P1 amplitude) and inhibitory control (N2 amplitude) in 15 high and 15 low spider fear females aged 18-40 years using a modified flanker go nogo task with increased cognitive load. Spider or flower go targets were flanked by incongruent images or neutral dashes. A central mushroom appeared on nogo trials, and could be flanked by either spider or flowers. High fears did not show faster RTs and greater P1 amplitude in response to spider targets as hypothesised, with both groups showing greater RTs to spider targets, and low fears demonstrating reduced P1 amplitude in the left hemisphere. Contrary to predictions, there was no fear-specific behavioural interference or reduced nogo-N2 amplitude in high fears, but they did show increased N2 amplitude on trials with spider flankers. This may suggest a compensatory inhibitory mechanism in response to feared stimuli. However, the current paradigm may not have adequately elicited automatic attentional processing or fear responses.
- Published
- 2016
38. Characterising dark net marketplace purchasers in a sample of regular psychostimulant users
- Author
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Buskirk, Joe Van, Roxburgh, Amanda, Bruno, Raimondo, Naicker, Sundresan, Lenton, Simon, Sutherland, Rachel, Whittaker, Elizabeth, Sindicich, Natasha, Matthews, Allison, Butler, Kerryn, Burns, Lucinda, Buskirk, Joe Van, Roxburgh, Amanda, Bruno, Raimondo, Naicker, Sundresan, Lenton, Simon, Sutherland, Rachel, Whittaker, Elizabeth, Sindicich, Natasha, Matthews, Allison, Butler, Kerryn, and Burns, Lucinda
- Abstract
Background: The past five years has seen a proliferation in marketplaces operating on the ‘dark net’ selling licit and illicit substances. While monitoring systems have investigated the specific substances for sale on these marketplaces, less is known about consumer motivations for accessing these marketplaces and factors associated with their use. Methods: An Australian national sample (n = 800) recruited on the basis of regular psychostimulant use was recruited and asked about purchasing substances from dark net marketplaces and the reasons for doing so. Respondents who had purchased any drug from a dark net marketplace in the preceding year were compared to those who had not in terms of demographic information and factors including drug use, criminal activity, and sexual and mental health. Results: Nine percent (n = 68) of the sample had purchased from dark net markets in the past year. MDMA, LSD and cannabis were the three most commonly purchased substances, and the main benefits cited for purchasing online were the better quality and lower cost of drugs available. Controlling for other factors, participants who purchased from dark net marketplaces in the past year tended to be younger, more likely to be involved in recent property crime and to have used more classes of drugs in the preceding six months, specifically psychedelics and ‘new psychoactive drugs’. Conclusions: Though a small minority of participants reported having purchased drugs online in the preceding six months, these appeared to be a more ‘entrenched’ group of consumers, with more diverse substance use and rates of criminal activity. For consumers in the current sample reporting recent dark net usage, country borders are now less of a significant barrier to purchase and there is a wider range of substances available than ever before.
- Published
- 2016
39. YY1 binding association with sex-biased transcription revealed through X-linked transcript levels and allelic binding analyses
- Author
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Chen, Chih-yu, primary, Shi, Wenqiang, additional, Balaton, Bradley P., additional, Matthews, Allison M., additional, Li, Yifeng, additional, Arenillas, David J., additional, Mathelier, Anthony, additional, Itoh, Masayoshi, additional, Kawaji, Hideya, additional, Lassmann, Timo, additional, Hayashizaki, Yoshihide, additional, Carninci, Piero, additional, Forrest, Alistair R. R., additional, Brown, Carolyn J., additional, and Wasserman, Wyeth W., additional
- Published
- 2016
- Full Text
- View/download PDF
40. Optic atrophy, cataracts, lipodystrophy/lipoatrophy, and peripheral neuropathy caused by a de novo OPA3 mutation
- Author
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Bourne, Stephanie C., primary, Townsend, Katelin N., additional, Shyr, Casper, additional, Matthews, Allison, additional, Lear, Scott A., additional, Attariwala, Raj, additional, Lehman, Anna, additional, Wasserman, Wyeth W., additional, van Karnebeek, Clara, additional, Sinclair, Graham, additional, Vallance, Hilary, additional, and Gibson, William T., additional
- Published
- 2016
- Full Text
- View/download PDF
41. THE NANOGRAV NINE-YEAR DATA SET: ASTROMETRIC MEASUREMENTS OF 37 MILLISECOND PULSARS
- Author
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Matthews, Allison M., primary, Nice, David J., additional, Fonseca, Emmanuel, additional, Arzoumanian, Zaven, additional, Crowter, Kathryn, additional, Demorest, Paul B., additional, Dolch, Timothy, additional, Ellis, Justin A., additional, Ferdman, Robert D., additional, Gonzalez, Marjorie E., additional, Jones, Glenn, additional, Jones, Megan L., additional, Lam, Michael T., additional, Levin, Lina, additional, McLaughlin, Maura A., additional, Pennucci, Timothy T., additional, Ransom, Scott M., additional, Stairs, Ingrid H., additional, Stovall, Kevin, additional, Swiggum, Joseph K., additional, and Zhu, Weiwei, additional
- Published
- 2016
- Full Text
- View/download PDF
42. STAT3 restrains RANK- and TLR4-mediated signalling by suppressing expression of the E2 ubiquitin-conjugating enzyme Ubc13
- Author
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Zhang, Huiyuan, primary, Hu, Hongbo, additional, Greeley, Nathaniel, additional, Jin, Jin, additional, Matthews, Allison J, additional, Ohashi, Erika, additional, Caetano, Mauricio S., additional, Li, Haiyan S., additional, Wu, Xuefeng, additional, Mandal, Pijus K., additional, McMurray, John S., additional, Moghaddam, Seyed Javad, additional, Sun, Shao-Cong, additional, and Watowich, Stephanie S., additional
- Published
- 2014
- Full Text
- View/download PDF
43. Textiles: fabrics and the market economy
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Matthews, Allison and Hardingham, Martin
- Subjects
Textile fabrics -- Study and teaching ,Textile industry -- Bangladesh ,General interest ,News, opinion and commentary - Abstract
Villagers from Nalta, Bangladesh, weave fabrics on handlooms and sell their production locally on markets in the form of bedding, bandages, saris, and lungis, men's traditional garments. Yarn, spun in Daka, Bangladesh, from cotton imported from China and India, is dyed prior to weaving in wooden tubs or big ceramic bowls. Undyed fabric, or grey cloth, is sometimes woven, then tie-dyed, printed or dyed by villagers who make cushion covers or table cloths to be exported through Alternative Trading Organisations (ATOs).
- Published
- 1993
44. A Tn-seq Screen of Streptococcus pneumoniaeUncovers DNA Repair as the Major Pathway for Desiccation Tolerance and Transmission
- Author
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Matthews, Allison J., Rowe, Hannah M., Rosch, Jason W., and Camilli, Andrew
- Abstract
Streptococcus pneumoniaeis an opportunistic pathogen that is a common cause of serious invasive diseases such as pneumonia, bacteremia, meningitis, and otitis media. Transmission of this bacterium has classically been thought to occur through inhalation of respiratory droplets and direct contact with nasal secretions.
- Published
- 2021
- Full Text
- View/download PDF
45. U. S. ARMY AREA HANDBOOK FOR INDIA
- Author
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AMERICAN UNIV WASHINGTON D C SPECIAL OPERATIONS RESEARCH OFFICE, Walpole,Norman C., Arkin,Sharon, Ghatate,Narayan, John,Howard J., Matthews,Allison B., AMERICAN UNIV WASHINGTON D C SPECIAL OPERATIONS RESEARCH OFFICE, Walpole,Norman C., Arkin,Sharon, Ghatate,Narayan, John,Howard J., and Matthews,Allison B.
- Abstract
The purpose of this Area Handbook for India is to describe briefly and in general terms the political, economic and social basis of Indian society, to outline its domestic and foreign policies and to evaluate its strengths and weaknesses. The present study represents a thorough revision of the Human Relations Area Files Area Handbook for India, which was issued in 1958, to consider the fundamental changes which have taken place and to utilize the many source materials which have become available since the earlier study was published. It supersedes the Interim Revision to the Area Handbook for India, published in March 1963 to fill the immediate need for an updated edition of the original Handbook pending the completion of the full revision. (Author), Also available from U.S. Government Printing Office, Washington 25, D. C., Price $2.50.
- Published
- 1964
46. Genome-wide sequencing and the clinical diagnosis of genetic disease: The CAUSES study.
- Author
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Elliott AM, Adam S, du Souich C, Lehman A, Nelson TN, van Karnebeek C, Alderman E, Armstrong L, Aubertin G, Blood K, Boelman C, Boerkoel C, Bretherick K, Brown L, Chijiwa C, Clarke L, Couse M, Creighton S, Watts-Dickens A, Gibson WT, Gill H, Tarailo-Graovac M, Hamilton S, Heran H, Horvath G, Huang L, Hulait GK, Koehn D, Lee HK, Lewis S, Lopez E, Louie K, Niederhoffer K, Matthews A, Meagher K, Peng JJ, Patel MS, Race S, Richmond P, Rupps R, Salvarinova R, Seath K, Selby K, Steinraths M, Stockler S, Tang K, Tyson C, van Allen M, Wasserman W, Mwenifumbo J, and Friedman JM
- Abstract
Genome-wide sequencing (GWS) is a standard of care for diagnosis of suspected genetic disorders, but the proportion of patients found to have pathogenic or likely pathogenic variants ranges from less than 30% to more than 60% in reported studies. It has been suggested that the diagnostic rate can be improved by interpreting genomic variants in the context of each affected individual's full clinical picture and by regular follow-up and reinterpretation of GWS laboratory results. Trio exome sequencing was performed in 415 families and trio genome sequencing in 85 families in the CAUSES study. The variants observed were interpreted by a multidisciplinary team including laboratory geneticists, bioinformaticians, clinical geneticists, genetic counselors, pediatric subspecialists, and the referring physician, and independently by a clinical laboratory using standard American College of Medical Genetics and Genomics (ACMG) criteria. Individuals were followed for an average of 5.1 years after testing, with clinical reassessment and reinterpretation of the GWS results as necessary. The multidisciplinary team established a diagnosis of genetic disease in 43.0% of the families at the time of initial GWS interpretation, and longitudinal follow-up and reinterpretation of GWS results produced new diagnoses in 17.2% of families whose initial GWS interpretation was uninformative or uncertain. Reinterpretation also resulted in rescinding a diagnosis in four families (1.9%). Of the families studied, 33.6% had ACMG pathogenic or likely pathogenic variants related to the clinical indication. Close collaboration among clinical geneticists, genetic counselors, laboratory geneticists, bioinformaticians, and individuals' primary physicians, with ongoing follow-up, reanalysis, and reinterpretation over time, can improve the clinical value of GWS., Competing Interests: The authors declare no competing interests., (© 2022 The Authors.)
- Published
- 2022
- Full Text
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47. Optic atrophy, cataracts, lipodystrophy/lipoatrophy, and peripheral neuropathy caused by a de novo OPA3 mutation.
- Author
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Bourne SC, Townsend KN, Shyr C, Matthews A, Lear SA, Attariwala R, Lehman A, Wasserman WW, van Karnebeek C, Sinclair G, Vallance H, and Gibson WT
- Abstract
We describe a woman who presented with cataracts, optic atrophy, lipodystrophy/lipoatrophy, and peripheral neuropathy. Exome sequencing identified a c.235C > G p.(Leu79Val) variant in the optic atrophy 3 ( OPA3 ) gene that was confirmed to be de novo. This report expands the severity of the phenotypic spectrum of autosomal dominant OPA3 mutations.
- Published
- 2017
- Full Text
- View/download PDF
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