395 results on '"Martin L. Yarmush,"'
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2. Partial freezing of rat livers extends preservation time by 5-fold
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Shannon N. Tessier, Reinier J. de Vries, Casie A. Pendexter, Stephanie E. J. Cronin, Sinan Ozer, Ehab O. A. Hafiz, Siavash Raigani, Joao Paulo Oliveira-Costa, Benjamin T. Wilks, Manuela Lopera Higuita, Thomas M. van Gulik, Osman Berk Usta, Shannon L. Stott, Heidi Yeh, Martin L. Yarmush, Korkut Uygun, and Mehmet Toner
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Science - Abstract
The limited preservation duration of donor organs is a big problem. Here the authors report a method for the freezing of whole rat livers at temperatures between −10 °C to −15 °C for up to 5 days, based on freeze-tolerant wood frogs, and term this partial freezing.
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- 2022
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3. Supramolecular hybrid hydrogels as rapidly on-demand dissoluble, self-healing, and biocompatible burn dressings
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A. Aslihan Gokaltun, Letao Fan, Luca Mazzaferro, Delaney Byrne, Martin L. Yarmush, Tianhong Dai, Ayse Asatekin, and O. Berk Usta
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Biomaterials ,Biomedical Engineering ,Article ,Biotechnology - Abstract
Despite decades of efforts, state-of-the-art synthetic burn dressings to treat partial-thickness burns are still far from ideal. Current dressings adhere to the wound and necessitate debridement. This work describes the first “supramolecular hybrid hydrogel (SHH)” burn dressing that is biocompatible, self-healable, and on-demand dissoluble for easy and trauma-free removal, prepared by a simple, fast, and scalable method. These SHHs leverage the interactions of a custom-designed cationic copolymer via host-guest chemistry with cucurbit[7]uril and electrostatic interactions with clay nanosheets coated with an anionic polymer to achieve enhanced mechanical properties and fast on-demand dissolution. The SHHs show high mechanical strength (>50 kPa), self-heal rapidly in ∼1 min, and dissolve quickly (4–6 min) using an amantadine hydrochloride (AH) solution that breaks the supramolecular interactions in the SHHs. Neither the SHHs nor the AH solution has any adverse effects on human dermal fibroblasts or epidermal keratinocytes in vitro. The SHHs also do not elicit any significant cytokine response in vitro. Furthermore, in vivo murine experiments show no immune or inflammatory cell infiltration in the subcutaneous tissue and no change in circulatory cytokines compared to sham controls. Thus, these SHHs present excellent burn dressing candidates to reduce the time of pain and time associated with dressing changes.
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- 2023
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4. Human-Origin iPSC-Based Recellularization of Decellularized Whole Rat Livers
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Aylin Acun, Ruben Oganesyan, Maria Jaramillo, Martin L. Yarmush, and Basak E. Uygun
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decellularization ,liver bioengineering ,iPSCs ,recellularization ,Technology ,Biology (General) ,QH301-705.5 - Abstract
End-stage liver diseases lead to mortality of millions of patients, as the only treatment available is liver transplantation and donor scarcity means that patients have to wait long periods before receiving a new liver. In order to minimize donor organ scarcity, a promising bioengineering approach is to decellularize livers that do not qualify for transplantation. Through decellularization, these organs can be used as scaffolds for developing new functional organs. In this process, the original cells of the organ are removed and ideally should be replaced by patient-specific cells to eliminate the risk of immune rejection. Induced pluripotent stem cells (iPSCs) are ideal candidates for developing patient-specific organs, yet the maturity and functionality of iPSC-derived cells do not match those of primary cells. In this study, we introduced iPSCs into decellularized rat liver scaffolds prior to the start of differentiation into hepatic lineages to maximize the exposure of iPSCs to native liver matrices. Through exposure to the unique composition and native 3D organization of the liver microenvironment, as well as the more efficient perfusion culture throughout the differentiation process, iPSC differentiation into hepatocyte-like cells was enhanced. The resulting cells showed significantly higher expression of mature hepatocyte markers, including important CYP450 enzymes, along with lower expression of fetal markers, such as AFP. Importantly, the gene expression profile throughout the different stages of differentiation was more similar to native development. Our study shows that the native 3D liver microenvironment has a pivotal role to play in the development of human-origin hepatocyte-like cells with more mature characteristics.
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- 2022
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5. A comparison of hepato-cellular in vitro platforms to study CYP3A4 induction.
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Beyza Bulutoglu, Camilo Rey-Bedón, Safak Mert, Lipeng Tian, Yoon-Young Jang, Martin L Yarmush, and O Berk Usta
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Medicine ,Science - Abstract
In vitro studies of drug toxicity and drug-drug interactions are crucial for drug development efforts. Currently, the utilization of primary human hepatocytes (PHHs) is the de facto standard for this purpose, due to their functional xenobiotic response and drug metabolizing CYP450 enzyme metabolism. However, PHHs are scarce, expensive, require laborious maintenance, and exhibit lot-to-lot heterogeneity. Alternative human in vitro platforms include hepatic cell lines, which are easy to access and maintain, and induced pluripotent stem cell (iPSC) derived hepatocytes. In this study, we provide a direct comparison of drug induced CYP3A4 and PXR expression levels of PHHs, hepatic cell lines Huh7 and HepG2, and iPSC derived hepatocyte like cells. Confluently cultured Huh7s exhibited an improved CYP3A4 expression and were inducible by up to 4.9-fold, and hepatocytes differentiated from human iPSCs displayed a 3.3-fold CYP3A4 induction. In addition, an increase in PXR expression levels was observed in both hepatic cell lines and iPSC derived hepatocytes upon rifampicin treatment, whereas a reproducible increase in PXR expression was not achieved in PHHs. Our results indicate that both hepatoma originated cell lines and iPSCs may provide alternative sources to primary hepatocytes, providing reliable and reproducible results for CYP3A4/PXR metabolism, upon in vitro maturation. This study may serve as a guide for the selection of suitable and feasible in vitro platforms for drug-drug interaction and toxicology studies.
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- 2020
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6. Long-term deep-supercooling of large-volume water and red cell suspensions via surface sealing with immiscible liquids
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Haishui Huang, Martin L. Yarmush, and O. Berk Usta
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Science - Abstract
Supercooled water is susceptible to spontaneous freezing, and preventing this process is a challenge. Here, the authors use surface sealing with immiscible liquids to eliminate primary ice nucleation at the water/air interface, enabling deep supercooling of large volumes of water and red cell suspensions for long time periods.
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- 2018
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7. Hepatic connexin 32 associates with nonalcoholic fatty liver disease severity
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Jay Luther, Manish K. Gala, Nynke Borren, Ricard Masia, Russell P. Goodman, Ida Hatoum Moeller, Erik DiGiacomo, Alyssa Ehrlich, Andrew Warren, Martin L. Yarmush, Ashwin Ananthakrishnan, Kathleen Corey, Lee M. Kaplan, Sangeeta Bhatia, Raymond T. Chung, and Suraj J. Patel
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Emerging data highlight the critical role for the innate immune system in the progression of nonalcoholic fatty liver disease (NAFLD). Connexin 32 (Cx32), the primary liver gap junction protein, is capable of modulating hepatic innate immune responses and has been studied in dietary animal models of steatohepatitis. In this work, we sought to determine the association of hepatic Cx32 with the stages of human NAFLD in a histologically characterized cohort of 362 patients with NAFLD. We also studied the hepatic expression of the genes and proteins known to interact with Cx32 (known as the connexome) in patients with NAFLD. Last, we used three independent dietary mouse models of nonalcoholic steatohepatitis to investigate the role of Cx32 in the development of steatohepatitis and fibrosis. In a univariate analysis, we found that Cx32 hepatic expression associates with each component of the NAFLD activity score and fibrosis severity. Multivariate analysis revealed that Cx32 expression most closely associated with the NAFLD activity score and fibrosis compared to known risk factors for the disease. Furthermore, by analyzing the connexome, we identified novel genes related to Cx32 that associate with NAFLD progression. Finally, we demonstrated that Cx32 deficiency protects against liver injury, inflammation, and fibrosis in three murine models of nonalcoholic steatohepatitis by limiting initial diet‐induced hepatoxicity and subsequent increases in intestinal permeability. Conclusion: Hepatic expression of Cx32 strongly associates with steatohepatitis and fibrosis in patients with NAFLD. We also identify novel genes associated with NAFLD and suggest that Cx32 plays a role in promoting NAFLD development. (Hepatology Communications 2018;2:786‐797)
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- 2018
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8. Gut Microbiota-Derived Tryptophan Metabolites Modulate Inflammatory Response in Hepatocytes and Macrophages
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Smitha Krishnan, Yufang Ding, Nima Saedi, Maria Choi, Gautham V. Sridharan, David H. Sherr, Martin L. Yarmush, Robert C. Alaniz, Arul Jayaraman, and Kyongbum Lee
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Biology (General) ,QH301-705.5 - Abstract
Summary: The gut microbiota plays a significant role in the progression of fatty liver disease; however, the mediators and their mechanisms remain to be elucidated. Comparing metabolite profile differences between germ-free and conventionally raised mice against differences between mice fed a low- and high-fat diet (HFD), we identified tryptamine and indole-3-acetate (I3A) as metabolites that depend on the microbiota and are depleted under a HFD. Both metabolites reduced fatty-acid- and LPS-stimulated production of pro-inflammatory cytokines in macrophages and inhibited the migration of cells toward a chemokine, with I3A exhibiting greater potency. In hepatocytes, I3A attenuated inflammatory responses under lipid loading and reduced the expression of fatty acid synthase and sterol regulatory element-binding protein-1c. These effects were abrogated in the presence of an aryl-hydrocarbon receptor (AhR) antagonist, indicating that the effects are AhR dependent. Our results suggest that gut microbiota could influence inflammatory responses in the liver through metabolites engaging host receptors. : Dysbiosis of the intestinal microbiota is an emerging factor contributing to the progression of fatty liver disease. Krishnan et al. utilize metabolomics and biochemical assays in conjunction with animal and cell culture models to identify microbiota-dependent metabolites that engage a host receptor to affect liver inflammatory responses under lipid loading. Keywords: nonalcoholic fatty liver disease, gut microbiota, metabolomics, indole-3-acetate, inflammation, aryl hydrocarbon receptor
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- 2018
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9. Alterations in Cytoskeleton and Mitochondria in the Development and Reversal of Steatosis in Human Hepatocytes
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Letao Fan, Aslihan Gokaltun, Sarah Maggipinto, Yoshinori Kitagawa, Jeevendra Martyn, Heidi Yeh, Basak E. Uygun, Martin L. Yarmush, and O. Berk Usta
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Hepatology ,Gastroenterology - Published
- 2023
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10. Data from Amphipathic Peptide-Based Fusion Peptides and Immunoconjugates for the Targeted Ablation of Prostate Cancer Cells
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Martin L. Yarmush, Zaki Megeed, Suraj J. Patel, and Kaushal Rege
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We describe the design, generation, and in vitro evaluation of targeted amphipathic fusion peptides and immunoconjugates for the ablation of prostate cancer cells. The overexpression of the prostate-specific membrane antigen (PSMA) was exploited as means to specifically deliver cytotoxic peptides to prostate cancer cells. Cationic amphipathic lytic peptides were chosen as cytotoxic agents due to their ability to depolarize mitochondrial membranes and induce apoptosis. Specific delivery of the lytic peptide was facilitated by PSMA-targeting peptides and antibodies. Our results indicate that although the use of PSMA-targeted peptides only modestly enhanced the cytotoxic activity of the lytic peptide, peptide-antibody conjugates were two orders of magnitude more potent than untargeted peptide. In addition to quantifying the cytotoxic activities of the individual constructs, we also investigated the mechanisms of cell death induced by the fusion peptides and immunoconjugates. Although fusion peptides induced oncotic/necrotic death in cells, treatment with immunoconjugates resulted in apoptotic death. In summary, immunoconjugates based on lytic peptides are a promising class of therapeutics for prostate cancer therapy and warrant further investigation. [Cancer Res 2007;67(13):6368–75]
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- 2023
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11. Supplementary Figures 1-2 from Amphipathic Peptide-Based Fusion Peptides and Immunoconjugates for the Targeted Ablation of Prostate Cancer Cells
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Martin L. Yarmush, Zaki Megeed, Suraj J. Patel, and Kaushal Rege
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Supplementary Figures 1-2 from Amphipathic Peptide-Based Fusion Peptides and Immunoconjugates for the Targeted Ablation of Prostate Cancer Cells
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- 2023
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12. FOXA1/2 depletion drives global reprogramming of differentiation state and metabolism in a human liver cell line and inhibits differentiation of human stem cell-derived hepatic progenitor cells
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Iyan Warren, Michael M. Moeller, Daniel Guiggey, Alexander Chiang, Mitchell Maloy, Ogechi Ogoke, Theodore Groth, Tala Mon, Saber Meamardoost, Xiaojun Liu, Sarah Thompson, Antoni Szeglowski, Ryan Thompson, Peter Chen, Ramasamy Paulmurugan, Martin L. Yarmush, Srivatsan Kidambi, and Natesh Parashurama
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Homeobox protein NANOG ,Mesoderm ,Organogenesis ,Germ layer ,Biology ,Biochemistry ,Cell biology ,medicine.anatomical_structure ,Downregulation and upregulation ,embryonic structures ,medicine ,Genetics ,FOXA2 ,Stem cell ,Endoderm ,Molecular Biology ,Biotechnology - Abstract
FOXA factors are critical members of the developmental gene regulatory network (GRN) composed of master transcription factors (TF) which regulate murine cell fate and metabolism in the gut and liver. How FOXA dictates human liver cell fate, differentiation, and simultaneously regulate metabolic pathways is poorly understood. Here, we aimed to determine the role of FOXA2 (and FOXA1 which is believed to compensate for FOXA2) in hepatic differentiation and cell metabolism in a human hepatic cell line (HepG2). siRNA targeting of FOXA1 and FOXA2 in human hepatic (HepG2) cells and during hepatic differentiation significantly downregulated albumin (p < 0.05) and GRN TF gene expression (HNF4A, HEX, HNF1B, TBX3) (p < 0.05) and significantly upregulated endoderm/gut/hepatic endoderm markers (goosecoid (GSC), FOXA3, and GATA4), gut TF (CDX2), pluripotent TF (NANOG), and neuroectodermal TF (PAX6) (p < 0.05), all consistent with a partial/transient cell reprogramming. shFOXA1/2 targeting resulted in similar findings and demonstrated evidence of reversibility. RNA-seq followed by bioinformatic analysis of shFOXA1/2 knockdown HepG2 cells demonstrated 235 significant downregulated genes and 448 upregulated genes, including upregulation of markers for alternate germ layers lineages (cardiac, endothelial, muscle) and neurectoderm (eye, neural). We found widespread downregulation of glycolysis, citric acid cycle, mitochondrial genes, and alterations in lipid metabolism, pentose phosphate pathway, and ketogenesis. Functional metabolic analysis agreed with these findings, demonstrating significantly diminished glycolysis and mitochondrial respiration, and accumulation of lipid droplets. We hypothesized that FOXA1/2 inhibit the initiation of human liver differentiation in vitro. During hPSC-hepatic differentiation, siRNA knockdown demonstrated de-differentiation and unexpectedly, activation of pluripotency factors and neuroectoderm. shRNA knockdown demonstrated similar results and activation of SOX9 (hepatobiliary). These results demonstrate complex effects of FOXA1/2 on hepatic GRN effecting de-differentiation and metabolism with applications in studies of cancer, differentiation, and organogenesis.
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- 2022
13. Combinatorial Use of Therapeutic ELP-Based Micelle Particles in Tissue Engineering
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Beyza Bulutoglu, Aylin Acun, Sarah L. Deng, Safak Mert, Elise Lupon, Alexandre G. Lellouch, Curtis L. Cetrulo, Basak E. Uygun, and Martin L. Yarmush
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Biomaterials ,Mice ,Wound Healing ,Tissue Engineering ,Biomedical Engineering ,Pharmaceutical Science ,Animals ,Nanoparticles ,Article ,Micelles ,Diabetes Mellitus, Experimental ,Elastin - Abstract
Elastin-like peptides (ELPs) are a versatile platform for tissue engineering and drug delivery. In this study, micelle forming ELP chains are genetically fused to three therapeutic molecules, keratinocyte growth factor (KGF), stromal cell-derived growth factor 1 (SDF1), and cathelicidin (LL37), to be used in wound healing. Chronic wounds represent a growing problem worldwide. A combinatorial therapy approach targeting different aspects of wound healing would be beneficial, providing a controlled and sustained release of active molecules, while simultaneously protecting these therapeutics from the surrounding harsh wound environment. The results of this study demonstrate that the conjugation of the growth factors KGF and SDF1, and the antimicrobial peptide LL37 to ELPs does not affect the micelle structure and that all three therapeutic moieties retain their bioactivity in vitro. Importantly, when the combination of these micelle ELP nanoparticles are applied to wounds in diabetic mice, over 90% wound closure is observed, which is significantly higher than when the therapeutics are applied in their naked forms. The application of the nanoparticles designed in this study is the first report of targeting different aspect of wound healing synergistically.
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- 2022
14. Rat liver regeneration following ablation with irreversible electroporation
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Alexander Golberg, Bote G. Bruinsma, Maria Jaramillo, Martin L. Yarmush, and Basak E. Uygun
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Liver regeneration ,Irreversible electroporation ,Liver ablation ,Pulsed electric fields ,Scarless regeneration ,Progenitor cells ,Medicine ,Biology (General) ,QH301-705.5 - Abstract
During the past decade, irreversible electroporation (IRE) ablation has emerged as a promising tool for the treatment of multiple diseases including hepatic cancer. However, the mechanisms behind the tissue regeneration following IRE ablation have not been investigated. Our results indicate that IRE treatment immediately kills the cells at the treatment site preserving the extracellular architecture, in effect causing in vivo decellularization. Over the course of 4 weeks, progenitor cell differentiation, through YAP and notch pathways, together with hepatocyte expansion led to almost complete regeneration of the ablated liver leading to the formation of hepatocyte like cells at the ablated zone. We did not observe significant scarring or tumor formation at the regenerated areas 6 months post IRE. Our study suggests a new model to study the regeneration of liver when the naïve extracellular matrix is decellularized in vivo with completely preserved extracellular architecture.
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- 2016
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15. Development of liver microtissues with functional biliary ductular network
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Basak E. Uygun, Hoda Abu-Taleb, Martin L. Yarmush, Ali El-Hindawi, Yibin Chen, Ehab O A Hafiz, Somia A. M. Soliman, Beyza Bulutoglu, and Soheir S. Mansy
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Biliary drainage ,Stromal cell ,Tissue Engineering ,Tight junction ,Chemistry ,Spheroid ,Bioengineering ,Bone canaliculus ,digestive system ,Applied Microbiology and Biotechnology ,Article ,Rats ,Cell biology ,medicine.anatomical_structure ,Liver ,Spheroids, Cellular ,Liver tissue ,Hepatocytes ,Duodenum ,medicine ,Animals ,Lobules of liver ,Bile Ducts ,Cells, Cultured ,Biotechnology - Abstract
Liver tissue engineering aims to create transplantable liver grafts that can serve as substitutes for donor's livers. One major challenge in creating a fully functional liver tissue has been to recreate the biliary drainage in an engineered liver construct through integration of bile canaliculi (BC) with the biliary ductular network that would enable the clearance of bile from the hepatocytes to the host duodenum. In this study, we show the formation of such a hepatic microtissue by coculturing rat primary hepatocytes with cholangiocytes and stromal cells. Our results indicate that within the spheroids, hepatocytes maintained viability and function for up to 7 days. Viable hepatocytes became polarized by forming BC with the presence of tight junctions. Morphologically, hepatocytes formed the core of the spheroids, while cholangiocytes resided at the periphery forming a monolayer microcysts and tubular structures extending outward. The spheroids were subsequently cultured in clusters to create a higher order ductular network resembling hepatic lobule. The cholangiocytes formed functional biliary ductular channels in between hepatic spheroids that were able to collect, transport, and secrete bile. Our results constitute the first step to recreate hepatic building blocks with biliary drainage for repopulating the whole liver scaffolds to be used as transplantable liver grafts.
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- 2020
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16. Differential Cell Death and Regrowth of Dermal Fibroblasts and Keratinocytes After Application of Pulsed Electric Fields
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Martin L. Yarmush, Francois Berthiaume, Alexander Golberg, Anil B. Shrirao, Rene S. Schloss, and Bodhisatwa Das
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Transplantation ,Programmed cell death ,Pathology ,medicine.medical_specialty ,Debridement ,business.industry ,medicine.medical_treatment ,Biomedical Engineering ,Medicine (miscellaneous) ,respiratory system ,respiratory tract diseases ,immune system diseases ,Electric field ,Medicine ,Electrical and Electronic Engineering ,Wound healing ,business ,Original Research ,circulatory and respiratory physiology - Abstract
Background: High-powered pulsed electric fields (PEF) may be used for tissue debridement and disinfection, while lower PEF intensities may stimulate beneficial cellular responses for wound healing. We investigated the dual effects of nonuniform PEF on cellular death and stimulation. Methods: Dermal fibroblast or keratinocyte monolayers were exposed to PEF induced by two needle electrodes (2 mm apart). Voltages (100–600 V; 1 Hz; 70 micros pulse width; 90 pulses/cycle) were applied between the two electrodes. Controls consisted of similar monolayers subjected to a scratch mechanical injury. Results: Cell growth and closure of the cell-free gap was faster in PEF-treated cell monolayers versus scratched ones. Media conditioned from cells pre-exposed to PEF, when applied to responder cells, stimulated greater proliferation than media from scratched monolayers. Conclusions: PEF treatment causes the release of soluble factors that promote cell growth, and thus may play a role in the accelerated healing of wounds post PEF.
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- 2020
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17. Deep learning robotic guidance for autonomous vascular access
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Max L. Balter, Alvin I. Chen, Tim Maguire, and Martin L. Yarmush
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0301 basic medicine ,Computer Networks and Communications ,Computer science ,business.industry ,Deep learning ,ComputingMethodologies_IMAGEPROCESSINGANDCOMPUTERVISION ,Vascular access ,Difficult Vascular Access ,Convolutional neural network ,Imaging phantom ,Human-Computer Interaction ,03 medical and health sciences ,Task (computing) ,030104 developmental biology ,0302 clinical medicine ,Artificial Intelligence ,Multimodal image ,Robot ,Computer vision ,Computer Vision and Pattern Recognition ,Artificial intelligence ,business ,030217 neurology & neurosurgery ,Software - Abstract
Medical robots have demonstrated the ability to manipulate percutaneous instruments into soft tissue anatomy while working beyond the limits of human perception and dexterity. Robotic technologies further offer the promise of autonomy in carrying out critical tasks with minimal supervision when resources are limited. Here, we present a portable robotic device capable of introducing needles and catheters into deformable tissues such as blood vessels to draw blood or deliver fluids autonomously. Robotic cannulation is driven by predictions from a series of deep convolutional neural networks that encode spatiotemporal information from multimodal image sequences to guide real-time servoing. We demonstrate, through imaging and robotic tracking studies in volunteers, the ability of the device to segment, classify, localize and track peripheral vessels in the presence of anatomical variability and motion. We then evaluate robotic performance in phantom and animal models of difficult vascular access and show that the device can improve success rates and procedure times compared to manual cannulations by trained operators, particularly in challenging physiological conditions. These results suggest the potential for autonomous systems to outperform humans on complex visuomotor tasks, and demonstrate a step in the translation of such capabilities into clinical use. Getting safe and fast access to blood vessels is vital to many methods of treatment and diagnosis in medicine. Robot-assisted or even fully autonomous methods can potentially do the task more reliably than humans, especially when veins are hard to detect. In this work, a method is tested that uses deep learning to find blood vessels and track the movement of a patient’s arm.
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- 2020
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18. Tissue scaffolds functionalized with therapeutic elastin‐like biopolymer particles
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Sarah L. Deng, Aylin Acun, Sarah S. Kelangi, Julie Devalliere, Beyza Bulutoglu, Basak E. Uygun, and Martin L. Yarmush
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Scaffold ,Fibroblast Growth Factor 7 ,Neovascularization, Physiologic ,Bioengineering ,Applied Microbiology and Biotechnology ,Article ,Mice ,chemistry.chemical_compound ,Biopolymers ,Tissue engineering ,In vivo ,Cell Line, Tumor ,medicine ,Animals ,Humans ,Cell Proliferation ,Tissue Engineering ,Tissue Scaffolds ,biology ,medicine.disease ,Elastin ,Cell biology ,Cellular infiltration ,chemistry ,Drug delivery ,biology.protein ,Collagen ,Keratinocyte growth factor ,Wound healing ,Biotechnology - Abstract
Tissue engineering scaffolds are intended to provide mechanical and biological support for cells to migrate, engraft and ultimately regenerate the tissue. Development of scaffolds with sustained delivery of growth factors and chemokines would enhance the therapeutic benefits, especially in wound healing. In this study, we incorporated our previously designed therapeutic particles, composed of fusion of elastin-like peptides (ELPs) as the drug delivery platform to keratinocyte growth factor (KGF), into a tissue scaffold, alloderm. The results demonstrated that sustained KGF-ELP release was achieved and the bioactivity of the released therapeutic particles was shown via cell proliferation assay, as well as a mouse pouch model in vivo, where higher cellular infiltration and vascularization were observed in scaffolds functionalized with KGF-ELPs.
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- 2020
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19. Development of Metabolic Indicators of Burn Injury: Very Low Density Lipoprotein (VLDL) and Acetoacetate Are Highly Correlated to Severity of Burn Injury in Rats
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Maria-Louisa Izamis, Korkut Uygun, Nripen S. Sharma, Basak Uygun, Martin L. Yarmush, and Francois Berthiaume
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hypermetabolism ,metabonomics ,flux analysis ,cluster analysis ,regression ,variable selection ,burn injury ,Microbiology ,QR1-502 - Abstract
Hypermetabolism is a significant sequela to severe trauma such as burns, as well as critical illnesses such as cancer. It persists in parallel to, or beyond, the original pathology for many months as an often-fatal comorbidity. Currently, diagnosis is based solely on clinical observations of increased energy expenditure, severe muscle wasting and progressive organ dysfunction. In order to identify the minimum number of necessary variables, and to develop a rat model of burn injury-induced hypermetabolism, we utilized data mining approaches to identify the metabolic variables that strongly correlate to the severity of injury. A clustering-based algorithm was introduced into a regression model of the extent of burn injury. As a result, a neural network model which employs VLDL and acetoacetate levels was demonstrated to predict the extent of burn injury with 88% accuracy in the rat model. The physiological importance of the identified variables in the context of hypermetabolism, and necessary steps in extension of this preliminary model to a clinically utilizable index of severity of burn injury are outlined.
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- 2012
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20. Layered patterning of hepatocytes in co-culture systems using microfabricated stencils
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Cheul H. Cho, Jaesung Park, Arno W. Tilles, François Berthiaume, Mehmet Toner, and Martin L. Yarmush
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hepatocytes ,co-culture ,layered cell patterning ,cellular interactions ,fibroblasts ,Biology (General) ,QH301-705.5 - Abstract
Microfabrication and micropatterning techniques in tissue engineering offer great potential for creating and controlling microenvironments in which cell behavior can be observed. Here we present a novel approach to generate layered patterning of hepatocytes on micropatterned fibroblast feeder layers using microfabricated polydimethylsiloxane (PDMS) stencils. We fabricated PDMS stencils to pattern circular holes with diameters of 500 µm. Hepatocytes were co-cultured with 3T3-J2 fibroblasts in two types of patterns to evaluate and characterize the cellular interactions in the co-culture systems. Results of this study demonstrated uniform intracellular albumin staining and E-cadherin expression, increased liver-specific functions, and active glycogen synthesis in the hepatocytes when the heterotypic interface between hepatocytes and fibroblasts was increased by the layered patterning technique. This patterning technique can be a useful experimental tool for applications in basic science, drug screening, and tissue engineering, as well as in the design of bioartificial liver devices.
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- 2010
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21. Reversible pH-controlled DNA-binding peptide nanotweezers: An in-silico study
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Gaurav Sharma, Kaushal Rege, David E Budil, Martin L Yarmush, and Constantinos Mavroidis
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Medicine (General) ,R5-920 - Abstract
Gaurav Sharma1, Kaushal Rege2,3, David E Budil4, Martin L Yarmush2,5, Constantinos Mavroidis11Department of Mechanical and Industrial Engineering; 4Department of Chemistry and Chemical Biology, Northeastern University, Boston, MA, USA; 2The Center for Engineering in Medicine (CEM), Massachusetts General Hospital and Harvard Medical School, Boston, MA, USA; 3Department of Chemical Engineering, Arizona State University, Tempe, AZ, USA; 5Department of Biomedical Engineering, Rutgers University, NJ, USAAbstract: We describe the molecular dynamics (MD)-aided engineering design of mutant peptides based on the α-helical coiled-coil GCN4 leucine zipper peptide (GCN4-p1) in order to obtain environmentally-responsive nanotweezers. The actuation mechanism of the nanotweezers depends on the modification of electrostatic charges on the residues along the length of the coiled coil. Modulating the solution pH between neutral and acidic values results in the reversible movement of helices toward and away from each other and creates a complete closed-open-closed transition cycle between the helices. Our results indicate that the mutants show a reversible opening of up to 15 Å (1.5 nm; approximately 150% of the initial separation) upon pH actuation. Investigation on the physicochemical phenomena that influence conformational properties, structural stability, and reversibility of the coiled-coil peptide-based nanotweezers revealed that a rationale- and design-based approach is needed to engineer stable peptide or macromolecules into stimuli-responsive devices. The efficacy of the mutant that demonstrated the most significant reversible actuation for environmentally responsive modulation of DNA-binding activity was also demonstrated. Our results have significant implications in bioseparations and in the engineering of novel transcription factors.Keywords: bionanotechnology, nanotweezers, coiled-coil, GCN4, leucine zipper, molecular dynamics, environmentally responsive peptides, transcription factor engineering
- Published
- 2008
22. Hepatic Injury in Nonalcoholic Steatohepatitis Contributes to Altered Intestinal PermeabilitySummary
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Jay Luther, John J. Garber, Hamed Khalili, Maneesh Dave, Shyam Sundhar Bale, Rohit Jindal, Daniel L. Motola, Sanjana Luther, Stefan Bohr, Soung Won Jeoung, Vikram Deshpande, Gurminder Singh, Jerrold R. Turner, Martin L. Yarmush, Raymond T. Chung, and Suraj J. Patel
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Diseases of the digestive system. Gastroenterology ,RC799-869 - Abstract
Background & Aims: Emerging data suggest that changes in intestinal permeability and increased gut microbial translocation contribute to the inflammatory pathway involved in nonalcoholic steatohepatitis (NASH) development. Numerous studies have investigated the association between increased intestinal permeability and NASH. Our meta-analysis of this association investigates the underlying mechanism. Methods: A meta-analysis was performed to compare the rates of increased intestinal permeability in patients with NASH and healthy controls. To further address the underlying mechanism of action, we studied changes in intestinal permeability in a diet-induced (methionine-and-choline-deficient; MCD) murine model of NASH. In vitro studies were also performed to investigate the effect of MCD culture medium at the cellular level on hepatocytes, Kupffer cells, and intestinal epithelial cells. Results: Nonalcoholic fatty liver disease (NAFLD) patients, and in particular those with NASH, are more likely to have increased intestinal permeability compared with healthy controls. We correlate this clinical observation with in vivo data showing mice fed an MCD diet develop intestinal permeability changes after an initial phase of liver injury and tumor necrosis factor-α (TNFα) induction. In vitro studies reveal that MCD medium induces hepatic injury and TNFα production yet has no direct effect on intestinal epithelial cells. Although these data suggest a role for hepatic TNFα in altering intestinal permeability, we found that mice genetically resistant to TNFα-myosin light chain kinase (MLCK)âinduced intestinal permeability changes fed an MCD diet still develop increased permeability and liver injury. Conclusions: Our clinical and experimental results strengthen the association between intestinal permeability increases and NASH and also suggest that an early phase of hepatic injury and inflammation contributes to altered intestinal permeability in a fashion independent of TNFα and MLCK. Keywords: Meta-Analysis, Myosin Light Chain Kinase, Steatosis, Tight Junctions
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- 2015
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23. The Role of CHI3L1 (Chitinase-3-Like-1) in the Pathogenesis of Infections in Burns in a Mouse Model.
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Stefan Bohr, Suraj J Patel, Radovan Vasko, Keyue Shen, Alexander Golberg, Francois Berthiaume, and Martin L Yarmush
- Subjects
Medicine ,Science - Abstract
In severe burn injury the unique setting of a depleted, dysfunctional immune system along with a loss of barrier function commonly results in opportunistic infections that eventually proof fatal. Unfortunately, the dynamic sequence of bacterial contamination, colonization and eventually septic invasion with bacteria such as Pseudomonas species is still poorly understood although a limiting factor in clinical decision making. Increasing evidence supports the notion that inhibition of bacterial translocation into the wound site may be an effective alternative to prevent infection. In this context we investigated the role of the mammalian Chitinase-3-Like-1 (CHI3L1) non-enyzmatic protein predominately expressed on epithelial as well as innate immune cells as a potential bacterial-translocation-mediating factor. We show a strong trend that a modulation of chitinase expression is likely to be effective in reducing mortality rates in a mouse model of burn injury with superinfection with the opportunistic PA14 Pseudomonas strain, thus demonstrating possible clinical leverage.
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- 2015
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24. High-Voltage, Pulsed Electric Fields Eliminate Pseudomonas aeruginosa Stable Infection in a Mouse Burn Model
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Andrey Ethan Rubin, Martin L. Yarmush, Mengjie Wu, Osman Berk Usta, Tianhong Dai, Alexander Golberg, and Rene S. Schloss
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0301 basic medicine ,Vascular Endothelial Growth Factor A ,Burn injury ,Electric Stimulation Therapy ,Critical Care and Intensive Care Medicine ,medicine.disease_cause ,030207 dermatology & venereal diseases ,03 medical and health sciences ,0302 clinical medicine ,Sepsis ,Tachycardia ,Medicine ,Animals ,Pseudomonas Infections ,Forum Technology Advances ,Inflammation ,business.industry ,Pseudomonas aeruginosa ,Incidence (epidemiology) ,Electrophoresis, Gel, Pulsed-Field ,Disinfection ,Disease Models, Animal ,030104 developmental biology ,Anesthesia ,Emergency Medicine ,Wound Infection ,business ,Burns ,Burn infections - Abstract
Objective: The incidence of severe infectious complications after burn injury increases mortality by 40%. However, traditional approaches for managing burn infections are not always effective. High-voltage, pulsed electric field (PEF) treatment shortly after a burn injury has demonstrated an antimicrobial effect in vivo; however, the working parameters and long-term effects of PEF treatment have not yet been investigated. Approach: Nine sets of PEF parameters were investigated to optimize the applied voltage, pulse duration, and frequency or pulse repetition for disinfection of Pseudomonas aeruginosa infection in a stable mouse burn wound model. The bacterial load after PEF administration was monitored for 3 days through bioluminescence imaging. Histological assessments and inflammation response analyses were performed at 1 and 24 h after the therapy. Results: Among all tested PEF parameters, the best disinfection efficacy of P. aeruginosa infection was achieved with a combination of 500 V, 100 μs, and 200 pulses delivered at 3 Hz through two plate electrodes positioned 1 mm apart for up to 3 days after the injury. Histological examinations revealed fewer inflammatory signs in PEF-treated wounds compared with untreated infected burns. Moreover, the expression levels of multiple inflammatory-related cytokines (interleukin [IL]-1α/β, IL-6, IL-10, leukemia inhibitory factor [LIF], and tumor necrosis factor-alpha [TNF-α]), chemokines (macrophage inflammatory protein [MIP]-1α/β and monocyte chemoattractant protein-1 [MCP-1]), and inflammation-related factors (vascular endothelial growth factor [VEGF], macrophage colony-stimulating factor [M-CSF], and granulocyte–macrophage colony-stimulating factor [G-CSF]) were significantly decreased in the infected burn wound after PEF treatment. Innovation: We showed that PEF treatment on infected wounds reduces the P. aeruginosa load and modulates inflammatory responses. Conclusion: The data presented in this study suggest that PEF treatment is a potent candidate for antimicrobial therapy for P. aeruginosa burn infections.
- Published
- 2021
25. Progressive hypoxia‐on‐a‐chip: An in vitro oxygen gradient model for capturing the effects of hypoxia on primary hepatocytes in health and disease
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Jinsu Eo, O. Berk Usta, Martin L. Yarmush, Beyza Bulutoglu, and Young Bok Abraham Kang
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0106 biological sciences ,0301 basic medicine ,Ischemia ,chemistry.chemical_element ,Bioengineering ,01 natural sciences ,Applied Microbiology and Biotechnology ,Oxygen ,Article ,03 medical and health sciences ,In vivo ,Lab-On-A-Chip Devices ,010608 biotechnology ,medicine ,Animals ,Hypoxia ,Cells, Cultured ,Liver sinusoid ,chemistry.chemical_classification ,Reactive oxygen species ,Chemistry ,Liver Diseases ,Hypoxia (medical) ,medicine.disease ,Rats ,Cell biology ,030104 developmental biology ,medicine.anatomical_structure ,Liver ,Hepatocyte ,Hepatocytes ,medicine.symptom ,Reactive Oxygen Species ,Ex vivo ,Biotechnology - Abstract
Oxygen is vital to the function of all tissues including the liver and lack of oxygen, i.e. hypoxia, can result in both acute and chronic injuries to the liver in vivo and ex vivo. Furthermore, a permanent oxygen gradient is naturally present along the liver sinusoid, which plays a role in the metabolic zonation and the pathophysiology of liver diseases. Accordingly, here, we introduce an in vitro microfluidic platform capable of actively creating a series of oxygen concentrations on a single continuous micro-tissue, ranging from normoxia to severe hypoxia. This range approximately captures both the physiologically relevant oxygen gradient generated from the portal vein to the central vein in the liver, and the severe hypoxia occurring in ischemia and liver diseases. Primary rat hepatocytes cultured in this microfluidic platform were exposed to an oxygen gradient of 0.3-6.9%. The establishment of an ascending hypoxia gradient in hepatocytes was confirmed in response to the decreasing oxygen supply. The hepatocyte viability, in this platform, decreased to approximately 80% along the hypoxia gradient. Simultaneously, a progressive increase in reactive oxygen species (ROS) accumulation and hypoxiainducible factor-1α (HIF1α) expression was observed with increasing hypoxia. These results demonstrate the induction of distinct metabolic and genetic responses in hepatocytes upon exposure to an oxygen (/hypoxia) gradient. This progressive hypoxia-on-a-chip platform can be used to study the role of oxygen and hypoxia-associated molecules in modeling healthy and injured liver tissues. Its use can be further expanded to the study of other hypoxic tissues such as tumors as well as the investigation of drug toxicity and efficacy under oxygen-limited conditions.
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- 2019
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26. Supercooling extends preservation time of human livers
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Thomas M. van Gulik, Korkut Uygun, Mehmet Toner, Sonal Nagpal, Martin L. Yarmush, Heidi Yeh, James F. Markmann, Sinan Ozer, Peony D. Banik, Stephanie E.J. Cronin, Ehab O A Hafiz, Shannon N. Tessier, Reinier J. de Vries, Graduate School, Surgery, and AGEM - Amsterdam Gastroenterology Endocrinology Metabolism
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Organ Preservation Solutions ,Biomedical Engineering ,Bioengineering ,Applied Microbiology and Biotechnology ,03 medical and health sciences ,0302 clinical medicine ,Humans ,Supercooling ,Liver preservation ,030304 developmental biology ,Tissue Survival ,0303 health sciences ,Machine perfusion ,Ice formation ,Chemistry ,Organ Preservation ,Cell biology ,Cold Temperature ,Perfusion ,Transplantation ,Liver ,Homogeneous ,Molecular Medicine ,030217 neurology & neurosurgery ,Ex vivo ,Biotechnology - Abstract
The inability to preserve vascular organs beyond several hours contributes to the scarcity of organs for transplantation1,2. Standard hypothermic preservation at +4 °C (refs. 1,3) limits liver preservation to less than 12 h. Our group previously showed that supercooled ice-free storage at –6 °C can extend viable preservation of rat livers4,5 However, scaling supercooling preservation to human organs is intrinsically limited because of volume-dependent stochastic ice formation. Here, we describe an improved supercooling protocol that averts freezing of human livers by minimizing favorable sites of ice nucleation and homogeneous preconditioning with protective agents during machine perfusion. We show that human livers can be stored at –4 °C with supercooling followed by subnormothermic machine perfusion, effectively extending the ex vivo life of the organ by 27 h. We show that viability of livers before and after supercooling is unchanged, and that after supercooling livers can withstand the stress of simulated transplantation by ex vivo normothermic reperfusion with blood. Preservation of human livers at subzero temperatures with ice-free supercooling extends ex vivo organ life.
- Published
- 2019
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27. A protein interaction free energy model based on amino acid residue contributions: Assessment of point mutation stability of T4 lysozyme
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Zachary Fritz, Lawrence J. Williams, Martin L. Yarmush, Brian J Schendt, Yonatan Attali, and Robert H Lavroff
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0301 basic medicine ,Chemistry ,Stereochemistry ,Point mutation ,A protein ,Interaction energy ,Protein engineering ,010402 general chemistry ,01 natural sciences ,Article ,0104 chemical sciences ,03 medical and health sciences ,chemistry.chemical_compound ,030104 developmental biology ,Amino acid residue ,Lysozyme ,Energy (signal processing) - Abstract
Here we present a model to estimate the interaction free energy contribution of each amino acid residue of a given protein. Protein interaction energy is described in terms of per-residue interaction factors, [Formula: see text]. Multibody interactions are implicitly captured in [Formula: see text] through the combination of amino acid terms ([Formula: see text]) guided by local conformation indices ([Formula: see text]). The model enables construction of an interaction factor heat map for a protein in a given fold, allows prima facie assessment of the degree of residue–residue interaction, and facilitates a qualitative and quantitative evaluation of protein association properties. The model was used to compute thermal stability of T4 bacteriophage lysozyme mutants across seven sites. Qualitative assessment of mutational effects provides a straightforward rationale regarding whether a particular site primarily perturbs native or non-native states, or both. The presented model was found to be in good agreement with experimental mutational data ([Formula: see text]) and suggests an approach by which to convert structure space into energy space.
- Published
- 2019
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28. Oxygenated UW solution decreases ATP decay and improves survival after transplantation of DCD liver grafts
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Martin L. Yarmush, Korkut Uygun, Tim A Berendsen, Bote G. Bruinsma, Heidi Yeh, Paulo N. Martins, James F. Markmann, Maria-Louisa Izamis, Sanna op den Dries, Robert J. Porte, Andrew R. Gillooly, and Groningen Institute for Organ Transplantation (GIOT)
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Male ,medicine.medical_specialty ,Adenosine ,medicine.medical_treatment ,Allopurinol ,Organ Preservation Solutions ,030230 surgery ,Liver transplantation ,Donor age ,03 medical and health sciences ,0302 clinical medicine ,Adenosine Triphosphate ,Raffinose ,Internal medicine ,Medicine ,Animals ,Insulin ,Viaspan ,Warm Ischemia ,Cold ischemia ,Transplantation ,Fluorocarbons ,business.industry ,Cold Ischemia ,Graft Survival ,Organ Preservation ,Warm ischemia ,Circulatory death ,Glutathione ,Liver Transplantation ,Rats ,Oxygen ,surgical procedures, operative ,Rats, Inbred Lew ,Cardiology ,030211 gastroenterology & hepatology ,business - Abstract
Donation after circulatory death (DCD) liver grafts are known to be predisposed to primary nonfunction and ischemic cholangiopathy. Many DCD grafts are discarded because of older donor age or long warm ischemia times. Thus, it is critical to improve the quality of DCD liver grafts. Here, we have tested whether an enriched oxygen carrier added to the preservation solution can prolong graft survival and reduce biliary damage.We assessed the adenosine triphosphate (ATP) content decay of mouse liver grafts after cold ischemia, warm ischemia, and combined warm+cold ischemia. In addition, we used a rat model of liver transplantation to compare survival of DCD grafts preserved in high-oxygen solution (preoxygenated perfluorocarbon [PFC] + University of Wisconsin [UW] solution) versus lower oxygen solution (preoxygenated UW solution).Adenosine triphosphate levels under UW preservation fall to less than 10% after 30 minutes of warm ischemia. Preoxygenated UW solution with PFC reached a significantly higher PaO2. After 45 minutes of warm ischemia in oxygenated UW + PFC solution, grafts showed 63% higher levels of ATP (P = 0.011). In addition, this was associated with better preservation of morphology when compared to grafts stored in standard UW solution. Animals that received DCD grafts preserved in higher oxygenation solution showed improved survival: 4 out of 6 animals survived long-term whereas all control group animals died within 24 hours.The additional oxygen provided by PFC during static cold preservation of DCD livers can better sustain ATP levels, and thereby reduce the severity of ischemic tissue damage. PFC-based preservation solution extends the tolerance to warm ischemia, and may reduce the rate of ischemic cholangiopathy.
- Published
- 2019
29. Metabolomic Modularity Analysis (MMA) to Quantify Human Liver Perfusion Dynamics
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Gautham Vivek Sridharan, Bote Gosse Bruinsma, Shyam Sundhar Bale, Anandh Swaminathan, Nima Saeidi, Martin L. Yarmush, and Korkut Uygun
- Subjects
metabolic networks ,liver ,cofactors ,modularity ,Microbiology ,QR1-502 - Abstract
Large-scale -omics data are now ubiquitously utilized to capture and interpret global responses to perturbations in biological systems, such as the impact of disease states on cells, tissues, and whole organs. Metabolomics data, in particular, are difficult to interpret for providing physiological insight because predefined biochemical pathways used for analysis are inherently biased and fail to capture more complex network interactions that span multiple canonical pathways. In this study, we introduce a nov-el approach coined Metabolomic Modularity Analysis (MMA) as a graph-based algorithm to systematically identify metabolic modules of reactions enriched with metabolites flagged to be statistically significant. A defining feature of the algorithm is its ability to determine modularity that highlights interactions between reactions mediated by the production and consumption of cofactors and other hub metabolites. As a case study, we evaluated the metabolic dynamics of discarded human livers using time-course metabolomics data and MMA to identify modules that explain the observed physiological changes leading to liver recovery during subnormothermic machine perfusion (SNMP). MMA was performed on a large scale liver-specific human metabolic network that was weighted based on metabolomics data and identified cofactor-mediated modules that would not have been discovered by traditional metabolic pathway analyses.
- Published
- 2017
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30. The growing role of precision and personalized medicine for cancer treatment
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Paulina Krzyszczyk, Max L. Balter, Erika J Davidoff, Ileana Marrero-Berrios, Corina White, Joseph J. Sherba, Kate O'Neill, Zachary Fritz, Misaal Patel, Rene S. Schloss, Christopher J. Lowe, Alison Acevedo, Martin L. Yarmush, Ioannis P. Androulakis, Clara Hartmanshenn, and Lauren M Timmins
- Subjects
0301 basic medicine ,medicine.medical_specialty ,business.industry ,Cancer Treatment ,Personalized Medicine ,Cancer ,Disease ,Precision medicine ,medicine.disease ,Article ,3. Good health ,Cancer treatment ,03 medical and health sciences ,Patient population ,030104 developmental biology ,0302 clinical medicine ,030220 oncology & carcinogenesis ,Health care ,medicine ,Personalized medicine ,Precision Medicine ,business ,Intensive care medicine - Abstract
Cancer is a devastating disease that takes the lives of hundreds of thousands of people every year. Due to disease heterogeneity, standard treatments, such as chemotherapy or radiation, are effective in only a subset of the patient population. Tumors can have different underlying genetic causes and may express different proteins in one patient versus another. This inherent variability of cancer lends itself to the growing field of precision and personalized medicine (PPM). There are many ongoing efforts to acquire PPM data in order to characterize molecular differences between tumors. Some PPM products are already available to link these differences to an effective drug. It is clear that PPM cancer treatments can result in immense patient benefits, and companies and regulatory agencies have begun to recognize this. However, broader changes to the healthcare and insurance systems must be addressed if PPM is to become part of standard cancer care.
- Published
- 2019
31. A microfluidic patterned model of non-alcoholic fatty liver disease: applications to disease progression and zonation
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Beyza Bulutoglu, Martin L. Yarmush, O. Berk Usta, Camilo Rey-Bedón, Safak Mert, and Young Bok Abraham Kang
- Subjects
Cirrhosis ,Biomedical Engineering ,Bioengineering ,02 engineering and technology ,Models, Biological ,digestive system ,01 natural sciences ,Biochemistry ,Article ,Pathogenesis ,Non-alcoholic Fatty Liver Disease ,Fibrosis ,medicine ,Animals ,Humans ,Cells, Cultured ,chemistry.chemical_classification ,Chemistry ,010401 analytical chemistry ,Fatty liver ,nutritional and metabolic diseases ,Fatty acid ,General Chemistry ,Microfluidic Analytical Techniques ,021001 nanoscience & nanotechnology ,medicine.disease ,digestive system diseases ,Rats ,0104 chemical sciences ,Oxygen ,Transplantation ,Rats, Inbred Lew ,Disease Progression ,Cancer research ,Female ,Steatosis ,Steatohepatitis ,0210 nano-technology - Abstract
Non-alcoholic fatty liver disease (NAFLD) and its progressive form non-alcoholic steatohepatitis (NASH) affect 25% of the world population. NAFLD is predicted to soon become the main cause of liver morbidity and transplantation. The disease is characterized by a progressive increase of lipid accumulation in hepatocytes, which eventually induce fibrosis and inflammation, and can ultimately cause cirrhosis and hepatic carcinoma. Here, we created a patterned model of NAFLD on a chip using free fatty acid gradients to recapitulate a spectrum of disease conditions in a single continuous liver tissue. We established the NAFLD progression via quantification of intracellular lipid accumulation and transcriptional levels of fatty acid transporters and NAFLD pathogenesis markers. We then used this platform to create oxygen driven steatosis zonation mimicking the sinusoidal lipid distribution on a single continuous tissue and showed that this fat zonation disappears under progressed steatosis, in agreement with in vivo observations and recent computational studies. While we focus on free fatty acids and oxygen as the drivers of NAFLD, the microfluidic platform here is extensible to simultaneous use of other drivers.
- Published
- 2019
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32. Pharmacokinetics of natural and engineered secreted factors delivered by mesenchymal stromal cells.
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Jessica S Elman, Ryan C Murray, Fangjing Wang, Keyue Shen, Shan Gao, Kevin E Conway, Martin L Yarmush, Bakhos A Tannous, Ralph Weissleder, and Biju Parekkadan
- Subjects
Medicine ,Science - Abstract
Transient cell therapy is an emerging drug class that requires new approaches for pharmacological monitoring during use. Human mesenchymal stem cells (MSCs) are a clinically-tested transient cell therapeutic that naturally secrete anti-inflammatory factors to attenuate immune-mediated diseases. MSCs were used as a proof-of-concept with the hypothesis that measuring the release of secreted factors after cell transplantation, rather than the biodistribution of the cells alone, would be an alternative monitoring tool to understand the exposure of a subject to MSCs. By comparing cellular engraftment and the associated serum concentration of secreted factors released from the graft, we observed clear differences between the pharmacokinetics of MSCs and their secreted factors. Exploration of the effects of natural or engineered secreted proteins, active cellular secretion pathways, and clearance mechanisms revealed novel aspects that affect the systemic exposure of the host to secreted factors from a cellular therapeutic. We assert that a combined consideration of cell delivery strategies and molecular pharmacokinetics can provide a more predictive model for outcomes of MSC transplantation and potentially other transient cell therapeutics.
- Published
- 2014
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33. Cloud-enabled microscopy and droplet microfluidic platform for specific detection of Escherichia coli in water.
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Alexander Golberg, Gregory Linshiz, Ilia Kravets, Nina Stawski, Nathan J Hillson, Martin L Yarmush, Robert S Marks, and Tania Konry
- Subjects
Medicine ,Science - Abstract
We report an all-in-one platform - ScanDrop - for the rapid and specific capture, detection, and identification of bacteria in drinking water. The ScanDrop platform integrates droplet microfluidics, a portable imaging system, and cloud-based control software and data storage. The cloud-based control software and data storage enables robotic image acquisition, remote image processing, and rapid data sharing. These features form a "cloud" network for water quality monitoring. We have demonstrated the capability of ScanDrop to perform water quality monitoring via the detection of an indicator coliform bacterium, Escherichia coli, in drinking water contaminated with feces. Magnetic beads conjugated with antibodies to E. coli antigen were used to selectively capture and isolate specific bacteria from water samples. The bead-captured bacteria were co-encapsulated in pico-liter droplets with fluorescently-labeled anti-E. coli antibodies, and imaged with an automated custom designed fluorescence microscope. The entire water quality diagnostic process required 8 hours from sample collection to online-accessible results compared with 2-4 days for other currently available standard detection methods.
- Published
- 2014
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34. Correction for Label Leakage in Fluorimetric Assays of Cell Adhesion
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Carlos L. Aparicio, Louis H. Strong, Martin L. Yarmush, and Francois Berthiaume
- Subjects
Biology (General) ,QH301-705.5 - Abstract
Current fluorescence-based adhesion assays that use a 96-well plate format rely on the assumption that the fluorescent label does not significantly leak from the cells. Thus, we evaluated a calcein-based, in vitro adhesion assay in 96-well plates using five different types of leukocytes (HL60 cells, human neutrophils, rat neutrophils, mouse progenitor T cells and EL4 cells). Each cell type leaked calcein at a different rate, with the highest rates found for rat neutrophils and progenitor T cells, which lost as much as 20%–40% of the label within 90 min, the time required to complete the assay. Thus, we developed a procedure to measure the dye leakage rate during the assay in order to obtain a correction factor, which was then used to calculate the “true” number of adherent cells. Data for the adhesion of FTF1 cells to endothelial monolayers, after correction for calcein leakage, deviated less than 10% of adhesion data obtained with a well-established 51Cr-based assay.
- Published
- 1997
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35. Resuscitation of ischemic donor livers with normothermic machine perfusion: a metabolic flux analysis of treatment in rats.
- Author
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Maria-Louisa Izamis, Herman Tolboom, Basak Uygun, Francois Berthiaume, Martin L Yarmush, and Korkut Uygun
- Subjects
Medicine ,Science - Abstract
Normothermic machine perfusion has previously been demonstrated to restore damaged warm ischemic livers to transplantable condition in animal models. However, the mechanisms of recovery are unclear, preventing rational optimization of perfusion systems and slowing clinical translation of machine perfusion. In this study, organ recovery time and major perfusate shortcomings were evaluated using a comprehensive metabolic analysis of organ function in perfusion prior to successful transplantation. Two groups, Fresh livers and livers subjected to 1 hr of warm ischemia (WI) received perfusion for a total preservation time of 6 hrs, followed by successful transplantation. 24 metabolic fluxes were directly measured and 38 stoichiometrically-related fluxes were estimated via a mass balance model of the major pathways of energy metabolism. This analysis revealed stable metabolism in Fresh livers throughout perfusion while identifying two distinct metabolic states in WI livers, separated at t = 2 hrs, coinciding with recovery of oxygen uptake rates to Fresh liver values. This finding strongly suggests successful organ resuscitation within 2 hrs of perfusion. Overall perfused livers regulated metabolism of perfusate substrates according to their metabolic needs, despite supraphysiological levels of some metabolites. This study establishes the first integrative metabolic basis for the dynamics of recovery during perfusion treatment of marginal livers. Our initial findings support enhanced oxygen delivery for both timely recovery and long-term sustenance. These results are expected to lead the optimization of the treatment protocols and perfusion media from a metabolic perspective, facilitating translation to clinical use.
- Published
- 2013
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36. Supercooling as a viable non-freezing cell preservation method of rat hepatocytes.
- Author
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O Berk Usta, Yeonhee Kim, Sinan Ozer, Bote G Bruinsma, Jungwoo Lee, Esin Demir, Tim A Berendsen, Catheleyne F Puts, Maria-Louisa Izamis, Korkut Uygun, Basak E Uygun, and Martin L Yarmush
- Subjects
Medicine ,Science - Abstract
Supercooling preservation holds the potential to drastically extend the preservation time of organs, tissues and engineered tissue products, and fragile cell types that do not lend themselves well to cryopreservation or vitrification. Here, we investigate the effects of supercooling preservation (SCP at -4(o)C) on primary rat hepatocytes stored in cryovials and compare its success (high viability and good functional characteristics) to that of static cold storage (CS at +4(o)C) and cryopreservation. We consider two prominent preservation solutions a) Hypothermosol (HTS-FRS) and b) University of Wisconsin solution (UW) and a range of preservation temperatures (-4 to -10 (o)C). We find that there exists an optimum temperature (-4(o)C) for SCP of rat hepatocytes which yields the highest viability; at this temperature HTS-FRS significantly outperforms UW solution in terms of viability and functional characteristics (secretions and enzymatic activity in suspension and plate culture). With the HTS-FRS solution we show that the cells can be stored for up to a week with high viability (~56%); moreover we also show that the preservation can be performed in large batches (50 million cells) with equal or better viability and no loss of functionality as compared to smaller batches (1.5 million cells) performed in cryovials.
- Published
- 2013
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37. Highly upregulated Lhx2 in the Foxn1-/- nude mouse phenotype reflects a dysregulated and expanded epidermal stem cell niche.
- Author
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Stefan Bohr, Suraj J Patel, Radovan Vasko, Keyue Shen, Guofeng Huang, Martin L Yarmush, and Francois Berthiaume
- Subjects
Medicine ,Science - Abstract
Hair cycling is a prime example of stem cell dependent tissue regeneration and replenishment, and its regulatory mechanisms remain poorly understood. In the present study, we evaluated the effect of a blockage in terminal keratinocytic lineage differentiation in the Foxn1(-/-) nude phenotype on the epithelial progeny. Most notably we found a constitutive upregulation of LIM homeobox protein 2 (Lhx2), a marker gene of epithelial stem cellness indispensible for hair cycle progression. However, histological evidence along with an erratic, acyclic rise of otherwise suppressed CyclinD1 levels along with several key markers of keratinocyte lineage differentiation indicate a frustrated expansion of epithelial stem cell niches in skin. In addition, CD49f/CD34/CD200-based profiling demonstrated highly significant shifts in subpopulations of epithelial progeny. Intriguingly this appeared to include the expansion of Oct4+ stem cells in dermal fractions of skin isolates in the Foxn1 knock-out opposed to wild type. Overall our findings indicate that the Foxn1(-/-) phenotype has a strong impact on epithelial progeny and thus offers a promising model to study maintenance and regulation of stem cell niches within skin not feasible in other in vitro or in vivo models.
- Published
- 2013
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38. Metabolic Flux Distribution during Defatting of Steatotic Human Hepatoma (HepG2) Cells
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Gabriel Yarmush, Lucas Santos, Joshua Yarmush, Srivathsan Koundinyan, Mubasher Saleem, Nir I. Nativ, Rene S. Schloss, Martin L. Yarmush, Timothy J. Maguire, and Francois Berthiaume
- Subjects
fatty liver ,steatosis ,defatting ,beta-oxidation ,mass balances ,liver transplantation ,hepatocytes ,Microbiology ,QR1-502 - Abstract
Methods that rapidly decrease fat in steatotic hepatocytes may be helpful to recover severely fatty livers for transplantation. Defatting kinetics are highly dependent upon the extracellular medium composition; however, the pathways involved are poorly understood. Steatosis was induced in human hepatoma cells (HepG2) by exposure to high levels of free fatty acids, followed by defatting using plain medium containing no fatty acids, or medium supplemented with a cocktail of defatting agents previously described before. We measured the levels of 28 extracellular metabolites and intracellular triglyceride, and fed the data into a steady-state mass balance model to estimate strictly intracellular fluxes. We found that during defatting, triglyceride content decreased, while beta-oxidation, the tricarboxylic acid cycle, and the urea cycle increased. These fluxes were augmented by defatting agents, and even more so by hyperoxic conditions. In all defatting conditions, the rate of extracellular glucose uptake/release was very small compared to the internal supply from glycogenolysis, and glycolysis remained highly active. Thus, in steatotic HepG2 cells, glycolysis and fatty acid oxidation may co-exist. Together, these pathways generate reducing equivalents that are supplied to mitochondrial oxidative phosphorylation.
- Published
- 2016
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39. Multiorgan Metabolomics and Lipidomics Provide New Insights Into Fat Infiltration in the Liver, Muscle Wasting, and Liver-Muscle Crosstalk Following Burn Injury
- Author
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Safak Mert, Martin L. Yarmush, Christopher Chu, Korkut Uygun, Robert L. Sheridan, Beyza Bulutoglu, Yong-Ming Yu, Maggie L. Dylewski, and Florence M Lin
- Subjects
Muscle tissue ,medicine.medical_specialty ,Burn injury ,Muscle Proteins ,Rats, Sprague-Dawley ,03 medical and health sciences ,0302 clinical medicine ,Internal medicine ,Lipidomics ,medicine ,Animals ,Glycolysis ,Muscle, Skeletal ,Wasting ,030304 developmental biology ,0303 health sciences ,business.industry ,Rehabilitation ,Rats ,Glutamine ,Disease Models, Animal ,medicine.anatomical_structure ,Endocrinology ,Gluconeogenesis ,Liver ,030220 oncology & carcinogenesis ,Emergency Medicine ,Hypermetabolism ,Surgery ,medicine.symptom ,business ,Burns - Abstract
Burn injury mediated hypermetabolic syndrome leads to increased mortality among severe burn victims, due to liver failure and muscle wasting. Metabolic changes may persist up to 2 years following the injury. Thus, understanding the underlying mechanisms of the pathology is crucially important to develop appropriate therapeutic approaches. We present detailed metabolomic and lipidomic analyses of the liver and muscle tissues in a rat model with a 30% body surface area burn injury located at the dorsal skin. Three hundred and thirty-eight of 1587 detected metabolites and lipids in the liver and 119 of 1504 in the muscle tissue exhibited statistically significant alterations. We observed excessive accumulation of triacylglycerols, decreased levels of S-adenosylmethionine, increased levels of glutamine and xenobiotics in the liver tissue. Additionally, the levels of gluconeogenesis, glycolysis, and tricarboxylic acid cycle metabolites are generally decreased in the liver. On the other hand, burn injury muscle tissue exhibits increased levels of acyl-carnitines, alpha-hydroxyisovalerate, ophthalmate, alpha-hydroxybutyrate, and decreased levels of reduced glutathione. The results of this preliminary study provide compelling observations that liver and muscle tissues undergo distinctly different changes during hypermetabolism, possibly reflecting liver–muscle crosstalk. The liver and muscle tissues might be exacerbating each other’s metabolic pathologies, via excessive utilization of certain metabolites produced by each other.
- Published
- 2020
40. Improvement of steatotic rat liver function with a defatting cocktail during ex situ normothermic machine perfusion is not directly related to liver fat content
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Stephanie Griffith, Cailah Carroll, Korkut Uygun, Rafic Beydoun, Martin L. Yarmush, Heidi Yeh, Ivy A. Rosales, Hany Deirawan, Siavash Raigani, and Casie A. Pendexter
- Subjects
Male ,Steatosis ,Physiology ,medicine.medical_treatment ,Gene Expression ,030230 surgery ,Liver transplantation ,Pathology and Laboratory Medicine ,Biochemistry ,Cytopathology ,chemistry.chemical_compound ,0302 clinical medicine ,Medicine and Health Sciences ,Bile ,Multidisciplinary ,Chemistry ,Organic Compounds ,Liver Diseases ,Fatty liver ,Fatty Acids ,Monosaccharides ,Organ Preservation ,Lipids ,Tissue Donors ,Body Fluids ,Perfusion ,Liver ,Physical Sciences ,Medicine ,Cytokines ,030211 gastroenterology & hepatology ,Anatomy ,Research Article ,Bicarbonate ,Science ,Carbohydrates ,Surgical and Invasive Medical Procedures ,Gastroenterology and Hepatology ,Defatting ,Andrology ,03 medical and health sciences ,Digestive System Procedures ,medicine ,Genetics ,Animals ,Lactic Acid ,Machine perfusion ,Transplantation ,Organic Chemistry ,Chemical Compounds ,Biology and Life Sciences ,Organ Transplantation ,medicine.disease ,Liver Transplantation ,Rats ,Fatty Liver ,Bicarbonates ,Disease Models, Animal ,Glucose ,Gene Expression Regulation ,Anatomical Pathology - Abstract
There is a significant organ shortage in the field of liver transplantation, partly due to a high discard rate of steatotic livers from donors. These organs are known to function poorly if transplanted but make up a significant portion of the available pool of donated livers. This study demonstrates the ability to improve the function of steatotic rat livers using a combination of ex situ machine perfusion and a "defatting" drug cocktail. After 6 hours of perfusion, defatted livers demonstrated lower perfusate lactate levels and improved bile quality as demonstrated by higher bile bicarbonate and lower bile lactate. Furthermore, defatting was associated with decreased gene expression of pro-inflammatory cytokines and increased expression of enzymes involved in mitochondrial fatty acid oxidation. Rehabilitation of marginal or discarded steatotic livers using machine perfusion and tailored drug therapy can significantly increase the supply of donor livers for transplantation.
- Published
- 2020
41. A comparison of hepato-cellular in vitro platforms to study CYP3A4 induction
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Safak Mert, O. Berk Usta, Camilo Rey-Bedón, Beyza Bulutoglu, Martin L. Yarmush, Yoon Young Jang, and Lipeng Tian
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0301 basic medicine ,Cellular differentiation ,Cell Lines ,Drug Evaluation, Preclinical ,Biochemistry ,0302 clinical medicine ,Drug Metabolism ,Animal Cells ,Medicine and Health Sciences ,Cytochrome P-450 CYP3A ,Drug Interactions ,Induced pluripotent stem cell ,Multidisciplinary ,Stem Cells ,Pregnane X Receptor ,Cytochrome P-450 CYP3A Inducers ,Cell Differentiation ,Cell biology ,Up-Regulation ,medicine.anatomical_structure ,Drug development ,Liver ,030220 oncology & carcinogenesis ,Hepatocyte ,Medicine ,Biological Cultures ,Metabolic Pathways ,Cellular Types ,Anatomy ,Research Article ,Science ,Induced Pluripotent Stem Cells ,Drug-Drug Interactions ,Biology ,Research and Analysis Methods ,Cell Line ,03 medical and health sciences ,Albumins ,Toxicity Tests ,medicine ,Xenobiotic Metabolism ,Humans ,Pharmacokinetics ,Pharmacology ,Biology and Life Sciences ,Proteins ,Reproducibility of Results ,Cell Biology ,In vitro ,030104 developmental biology ,Metabolism ,Cell culture ,Hepatic stellate cell ,Hepatocytes ,Stem Cell Lines ,Drug metabolism ,Developmental Biology - Abstract
In vitro studies of drug toxicity and drug-drug interactions are crucial for drug development efforts. Currently, the utilization of primary human hepatocytes (PHHs) is the de facto standard for this purpose, due to their functional xenobiotic response and drug metabolizing CYP450 enzyme metabolism. However, PHHs are scarce, expensive, require laborious maintenance, and exhibit lot-to-lot heterogeneity. Alternative human in vitro platforms include hepatic cell lines, which are easy to access and maintain, and induced pluripotent stem cell (iPSC) derived hepatocytes. In this study, we provide a direct comparison of drug induced CYP3A4 and PXR expression levels of PHHs, hepatic cell lines Huh7 and HepG2, and iPSC derived hepatocyte like cells. Confluently cultured Huh7s exhibited an improved CYP3A4 expression and were inducible by up to 4.9-fold, and hepatocytes differentiated from human iPSCs displayed a 3.3-fold CYP3A4 induction. In addition, an increase in PXR expression levels was observed in both hepatic cell lines and iPSC derived hepatocytes upon rifampicin treatment, whereas a reproducible increase in PXR expression was not achieved in PHHs. Our results indicate that both hepatoma originated cell lines and iPSCs may provide alternative sources to primary hepatocytes, providing reliable and reproducible results for CYP3A4/PXR metabolism, upon in vitro maturation. This study may serve as a guide for the selection of suitable and feasible in vitro platforms for drug-drug interaction and toxicology studies.
- Published
- 2020
42. Metabolic and lipidomic profiling of steatotic human livers during ex situ normothermic machine perfusion guides resuscitation strategies
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Korkut Uygun, Martin L. Yarmush, Sharon Geerts, Negin Karimian, Ehab O A Hafiz, Siavash Raigani, Mohamed M. Aburawi, Fermin Fontan, Heidi Yeh, Paria Mahboub, Robert J. Porte, Viola Huang, Anna M Zhang, James F. Markmann, Irene Beijert, Sonal Nagpal, and Groningen Institute for Organ Transplantation (GIOT)
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Resuscitation ,Physiology ,Biopsy ,030230 surgery ,Biochemistry ,0302 clinical medicine ,Adenosine Triphosphate ,Liver Function Tests ,Medicine and Health Sciences ,Medicine ,Bile ,chemistry.chemical_classification ,Multidisciplinary ,Liver Diseases ,Fatty Acids ,Temperature ,Lipids ,Lipid Profiles ,Body Fluids ,Perfusion ,Liver ,Ketone bodies ,030211 gastroenterology & hepatology ,Anatomy ,Oxidation-Reduction ,Polyunsaturated fatty acid ,Research Article ,Science ,Surgical and Invasive Medical Procedures ,Gastroenterology and Hepatology ,Carbohydrate metabolism ,Andrology ,Bile Acids and Salts ,03 medical and health sciences ,Digestive System Procedures ,Lipidomics ,Humans ,Metabolomics ,Machine perfusion ,Transplantation ,business.industry ,Hemodynamics ,Biology and Life Sciences ,Lipid metabolism ,Organ Transplantation ,Lipid Metabolism ,Liver Transplantation ,Fatty Liver ,Oxidative Stress ,Glucose ,Metabolism ,chemistry ,Vascular Resistance ,business - Abstract
There continues to be a significant shortage of donor livers for transplantation. One impediment is the discard rate of fatty, or steatotic, livers because of their poor post-transplant function. Steatotic livers are prone to significant ischemia-reperfusion injury (IRI) and data regarding how best to improve the quality of steatotic livers is lacking. Herein, we use normothermic (37°C) machine perfusion in combination with metabolic and lipidomic profiling to elucidate deficiencies in metabolic pathways in steatotic livers, and to inform strategies for improving their function. During perfusion, energy cofactors increased in steatotic livers to a similar extent as non-steatotic livers, but there were significant deficits in anti-oxidant capacity, efficient energy utilization, and lipid metabolism. Steatotic livers appeared to oxidize fatty acids at a higher rate but favored ketone body production rather than energy regeneration via the tricyclic acid cycle. As a result, lactate clearance was slower and transaminase levels were higher in steatotic livers. Lipidomic profiling revealed ω-3 polyunsaturated fatty acids increased in non-steatotic livers to a greater extent than in steatotic livers. The novel use of metabolic and lipidomic profiling during ex situ normothermic machine perfusion has the potential to guide the resuscitation and rehabilitation of steatotic livers for transplantation.
- Published
- 2020
43. Machine‐Assisted Discovery of Chondroitinase ABC Complexes toward Sustained Neural Regeneration
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Shashank Kosuri, Carlos H. Borca, Heloise Mugnier, Matthew Tamasi, Roshan A. Patel, Isabel Perez, Suneel Kumar, Zachary Finkel, Rene Schloss, Li Cai, Martin L. Yarmush, Michael A. Webb, and Adam J. Gormley
- Subjects
Biomaterials ,Biomedical Engineering ,Humans ,Pharmaceutical Science ,Bayes Theorem ,Chondroitin ABC Lyase ,Axons ,Spinal Cord Injuries ,Article ,Nerve Regeneration - Abstract
Among the many molecules that contribute to glial scarring, chondroitin sulfate proteoglycans (CSPGs) are known to be potent inhibitors of neuronal regeneration. Chondroitinase ABC (ChABC), a bacterial lyase, is known to degrade the glycosaminoglycan (GAG) side chains of CSPGs and promote tissue regeneration. However, ChABC is thermally unstable and loses all activity within a few hours at 37°C under dilute conditions. To overcome this limitation, we report the discovery of a diverse set of tailor-made random copolymers that complex and stabilize ChABC at physiological temperature. The copolymer designs, which are based on chain length and composition of the copolymers, were identified using an active machine learning paradigm, which involves iterative copolymer synthesis, testing for ChABC thermostability upon copolymer complexation, Gaussian Process Regression modeling, and Bayesian optimization. Copolymers are synthesized by automated PET-RAFT and thermostability of ChABC is assessed by retained enzyme activity (REA) after 24 hrs at 37°C. We demonstrated significant improvements in REA in three iterations of active learning while identifying exceptionally high-performing copolymers. Most remarkably, one designed copolymer promoted residual ChABC activity near 30%, even after one week and notably outperformed other common stabilization methods for ChABC. Together, these results highlight a promising pathway towards sustained tissue regeneration.
- Published
- 2022
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44. Correction: Enhancement of Naringenin Bioavailability by Complexation with Hydroxypropoyl-β-Cyclodextrin.
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Maria Shulman, Merav Cohen, Alejandro Soto-Gutierrez, Hiroshi Yagi, Hongyun Wang, Jonathan Goldwasser, Carolyn W. Lee-Parsons, Ofra Benny-Ratsaby, Martin L. Yarmush, and Yaakov Nahmias
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Medicine ,Science - Published
- 2012
- Full Text
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45. Secreted Factors from Bone Marrow Stromal Cells Upregulate IL-10 and Reverse Acute Kidney Injury
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Jack M. Milwid, Takaharu Ichimura, Matthew Li, Yunxin Jiao, Jungwoo Lee, Joshua S. Yarmush, Biju Parekkadan, Arno W. Tilles, Joseph V. Bonventre, and Martin L. Yarmush
- Subjects
Internal medicine ,RC31-1245 - Abstract
Acute kidney injury is a devastating syndrome that afflicts over 2,000,000 people in the US per year, with an associated mortality of greater than 70% in severe cases. Unfortunately, standard-of-care treatments are not sufficient for modifying the course of disease. Many groups have explored the use of bone marrow stromal cells (BMSCs) for the treatment of AKI because BMSCs have been shown to possess unique anti-inflammatory, cytoprotective, and regenerative properties in vitro and in vivo. It is yet unresolved whether the primary mechanisms controlling BMSC therapy in AKI depend on direct cell infusion, or whether BMSC-secreted factors alone are sufficient for mitigating the injury. Here we show that BMSC-secreted factors are capable of providing a survival benefit to rats subjected to cisplatin-induced AKI. We observed that when BMSC-conditioned medium (BMSC-CM) is administered intravenously, it prevents tubular apoptosis and necrosis and ameliorates AKI. In addition, we observed that BMSC-CM causes IL-10 upregulation in treated animals, which is important to animal survival and protection of the kidney. In all, these results demonstrate that BMSC-secreted factors are capable of providing support without cell transplantation, and the IL-10 increase seen in BMSC-CM-treated animals correlates with attenuation of severe AKI.
- Published
- 2012
- Full Text
- View/download PDF
46. Improving functional re-endothelialization of acellular liver scaffold using REDV cell-binding domain
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Julie Devalliere, Yibin Chen, Basak E. Uygun, Martin L. Yarmush, and Kevin Dooley
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0301 basic medicine ,Scaffold ,Endothelium ,Cell ,Biomedical Engineering ,02 engineering and technology ,Biochemistry ,Article ,Cell Line ,Biomaterials ,03 medical and health sciences ,Protein Domains ,Tissue engineering ,medicine ,Animals ,Humans ,Molecular Biology ,Decellularization ,Tissue Scaffolds ,Chemistry ,Endothelial Cells ,General Medicine ,021001 nanoscience & nanotechnology ,Fusion protein ,Rats ,Cell biology ,Endothelial stem cell ,Transplantation ,030104 developmental biology ,medicine.anatomical_structure ,Liver ,0210 nano-technology ,Oligopeptides ,Biotechnology - Abstract
Engineering of functional vascularized liver tissues holds great promise in addressing donor organ shortage for transplantation. Whole organ decellularization is a cell removal method that retains the native vascular structures of the organ such that it can be anastomosed with the recipient circulation after recellularization with healthy cells. However, a main hurdle to successful implantation of bioengineered organ is the inability to efficiently re-endothelialize the vasculature with a functional endothelium, resulting in blood clotting which is the primary cause of failure in early transplant studies. Here, we present an efficient approach for enhancing re-endothelialization of decellularized rat liver scaffolds by conjugating the REDV cell-binding domain to improve attachment of endothelial cells (EC) on vascular wall surfaces. In order to facilitate expression and purification of the peptide, REDV was fused with elastin-like peptide (ELP) that confers thermally triggered aggregation behavior to the fusion protein. After validating the adhesive properties of the REDV-ELP peptide, we covalently coupled REDV-ELP to the blood vasculature of decellularized rat livers and seeded EC using perfusion of the portal vein. We showed that REDV-ELP increased cell attachment, spreading and proliferation of EC within the construct resulting in uniform endothelial lining of the scaffold vasculature. We further observed that REDV-ELP conjugation dramatically reduced platelet adhesion and activation. Altogether, our results demonstrate that this method allowed functional re-endothelialization of liver scaffold and show great potential toward the generation of functional bioengineered liver for long-term transplantation. Statement of Significance There is a critical need for novel organ replacement therapies as the grafts for transplantation fall short of demand. Recent advances in tissue engineering, through the use of decellularized scaffolds, have opened the possibility that engineered grafts could be used as substitutes for donor livers. However, successful implantation has been challenged by the inability to create a functional vasculature. Our research study reports a new strategy to increase efficiency of endothelialization by increasing the affinity of the vascular matrix for endothelial cells. We functionalized decellularized liver scaffold using elastin-like peptides grafted with REDV cell binding domain. We showed that REDV-ELP conjugation improve endothelial cell attachment and proliferation within the scaffold, demonstrating the feasibility of re-endothelializing a whole liver vasculature using our technique.
- Published
- 2018
- Full Text
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47. Hepatic connexin 32 associates with nonalcoholic fatty liver disease severity
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Ashwin N. Ananthakrishnan, Lee M. Kaplan, Ricard Masia, Russell P. Goodman, Manish Gala, Kathleen E. Corey, N. Borren, Andrew Warren, Raymond T. Chung, Suraj J. Patel, Martin L. Yarmush, Alyssa C. Ehrlich, Sangeeta N. Bhatia, Erik DiGiacomo, Ida J Hatoum Moeller, Jay Luther, and Harvard University--MIT Division of Health Sciences and Technology
- Subjects
0301 basic medicine ,medicine.medical_specialty ,Inflammation ,Disease ,Gastroenterology ,03 medical and health sciences ,0302 clinical medicine ,Fibrosis ,Internal medicine ,Nonalcoholic fatty liver disease ,medicine ,education ,Liver injury ,education.field_of_study ,Hepatology ,urogenital system ,business.industry ,nutritional and metabolic diseases ,Original Articles ,medicine.disease ,digestive system diseases ,3. Good health ,030104 developmental biology ,Connexin 32 ,Original Article ,030211 gastroenterology & hepatology ,medicine.symptom ,Steatohepatitis ,business - Abstract
Emerging data highlight the critical role for the innate immune system in the progression of nonalcoholic fatty liver disease (NAFLD). Connexin 32 (Cx32), the primary liver gap junction protein, is capable of modulating hepatic innate immune responses and has been studied in dietary animal models of steatohepatitis. In this work, we sought to determine the association of hepatic Cx32 with the stages of human NAFLD in a histologically characterized cohort of 362 patients with NAFLD. We also studied the hepatic expression of the genes and proteins known to interact with Cx32 (known as the connexome) in patients with NAFLD. Last, we used three independent dietary mouse models of nonalcoholic steatohepatitis to investigate the role of Cx32 in the development of steatohepatitis and fibrosis. In a univariate analysis, we found that Cx32 hepatic expression associates with each component of the NAFLD activity score and fibrosis severity. Multivariate analysis revealed that Cx32 expression most closely associated with the NAFLD activity score and fibrosis compared to known risk factors for the disease. Furthermore, by analyzing the connexome, we identified novel genes related to Cx32 that associate with NAFLD progression. Finally, we demonstrated that Cx32 deficiency protects against liver injury, inflammation, and fibrosis in three murine models of nonalcoholic steatohepatitis by limiting initial diet-induced hepatoxicity and subsequent increases in intestinal permeability. Conclusion: Hepatic expression of Cx32 strongly associates with steatohepatitis and fibrosis in patients with NAFLD. We also identify novel genes associated with NAFLD and suggest that Cx32 plays a role in promoting NAFLD development. (Hepatology Communications 2018;2:786-797).
- Published
- 2018
- Full Text
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48. Automated end-to-end blood testing at the point-of-care: Integration of robotic phlebotomy with downstream sample processing
- Author
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Anil B. Shrirao, Josh M. Leipheimer, Tim Maguire, Alvin I. Chen, Martin L. Yarmush, and Max L. Balter
- Subjects
medicine.medical_specialty ,Spectrum analyzer ,Hematology ,Venipuncture ,Computer science ,030204 cardiovascular system & hematology ,Phlebotomy ,Article ,03 medical and health sciences ,0302 clinical medicine ,medicine.anatomical_structure ,030220 oncology & carcinogenesis ,White blood cell ,Internal medicine ,medicine ,Blood vessel ,Blood drawing ,Biomedical engineering ,Point of care - Abstract
Diagnostic blood testing is the most commonly performed clinical procedure in the world, and influences the majority of medical decisions made in hospital and laboratory settings. However, manual blood draw success rates are dependent on clinician skill and patient physiology, and results are generated almost exclusively in centralized labs from large-volume samples using labor-intensive analytical techniques. This paper presents a medical device that enables end-to-end blood testing by performing blood draws and providing diagnostic results in a fully automated fashion at the point-of-care. The system couples an image-guided venipuncture robot, developed to address the challenges of routine venous access, with a centrifuge-based blood analyzer to obtain quantitative measurements of hematology. We first demonstrate a white blood cell assay on the analyzer, using a blood mimicking fluid spiked with fluorescent microbeads, where the area of the packed bead layer is correlated with the bead concentration. Next we perform experiments to evaluate the pumping efficiency of the sample handling module. Finally, studies are conducted on the integrated device — from blood draw to analysis — using blood vessel phantoms to assess the accuracy and repeatability of the resulting white blood cell assay.
- Published
- 2018
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49. Microfluidic flow cytometry: The role of microfabrication methodologies, performance and functional specification
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Anil B. Shrirao, Eric M. Novik, Rene S. Schloss, Jeffrey D. Zahn, Gabriel M. Yarmush, Martin L. Yarmush, and Zachary Fritz
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Functional specification ,business.industry ,Computer science ,010401 analytical chemistry ,Microfluidics ,Sorting ,Micropump ,02 engineering and technology ,021001 nanoscience & nanotechnology ,01 natural sciences ,Automation ,Article ,0104 chemical sciences ,Software portability ,Flow focusing ,Systems engineering ,0210 nano-technology ,business ,Throughput (business) - Abstract
Flow cytometry is an invaluable tool utilized in modern biomedical research and clinical applications requiring high throughput, high resolution particle analysis for cytometric characterization and/or sorting of cells and particles as well as for analyzing results from immunocytometric assays. In recent years, research has focused on developing microfluidic flow cytometers with the motivation of creating smaller, less expensive, simpler, and more autonomous alternatives to conventional flow cytometers. These devices could ideally be highly portable, easy to operate without extensive user training, and utilized for research purposes and/or point-of-care diagnostics especially in limited resource facilities or locations requiring on-site analyses. However, designing a device that fulfills the criteria of high throughput analysis, automation and portability, while not sacrificing performance is not a trivial matter. This review intends to present the current state of the field and provide considerations for further improvement by focusing on the key design components of microfluidic flow cytometers. The recent innovations in particle focusing and detection strategies are detailed and compared. This review outlines performance matrix parameters of flow cytometers that are interdependent with each other, suggesting trade offs in selection based on the requirements of the applications. The ongoing contribution of microfluidics demonstrates that it is a viable technology to advance the current state of flow cytometry and develop automated, easy to operate and cost-effective flow cytometers.
- Published
- 2018
- Full Text
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50. Live cell imaging of cytosolic NADH/NAD+ratio in hepatocytes and liver slices
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Raymond T. Chung, William J. McCarty, Ricard Masia, Carolina Lahmann, Jay Luther, Martin L. Yarmush, and Gary Yellen
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0301 basic medicine ,Hepatology ,biology ,Physiology ,Gastroenterology ,Nadh nad ,Fluorescence ,03 medical and health sciences ,Cytosol ,030104 developmental biology ,0302 clinical medicine ,Glycerol-3-phosphate dehydrogenase ,Biochemistry ,Live cell imaging ,Physiology (medical) ,biology.protein ,NAD+ kinase ,Biosensor ,030217 neurology & neurosurgery ,Alcohol dehydrogenase - Abstract
Fatty liver disease (FLD), the most common chronic liver disease in the United States, may be caused by alcohol or the metabolic syndrome. Alcohol is oxidized in the cytosol of hepatocytes by alcohol dehydrogenase (ADH), which generates NADH and increases cytosolic NADH/NAD+ratio. The increased ratio may be important for development of FLD, but our ability to examine this question is hindered by methodological limitations. To address this, we used the genetically encoded fluorescent sensor Peredox to obtain dynamic, real-time measurements of cytosolic NADH/NAD+ratio in living hepatocytes. Peredox was expressed in dissociated rat hepatocytes and HepG2 cells by transfection, and in mouse liver slices by tail-vein injection of adeno-associated virus (AAV)-encoded sensor. Under control conditions, hepatocytes and liver slices exhibit a relatively low (oxidized) cytosolic NADH/NAD+ratio as reported by Peredox. The ratio responds rapidly and reversibly to substrates of lactate dehydrogenase (LDH) and sorbitol dehydrogenase (SDH). Ethanol causes a robust dose-dependent increase in cytosolic NADH/NAD+ratio, and this increase is mitigated by the presence of NAD+-generating substrates of LDH or SDH. In contrast to hepatocytes and slices, HepG2 cells exhibit a relatively high (reduced) ratio and show minimal responses to substrates of ADH and SDH. In slices, we show that comparable results are obtained with epifluorescence imaging and two-photon fluorescence lifetime imaging (2p-FLIM). Live cell imaging with Peredox is a promising new approach to investigate cytosolic NADH/NAD+ratio in hepatocytes. Imaging in liver slices is particularly attractive because it allows preservation of liver microanatomy and metabolic zonation of hepatocytes.NEW & NOTEWORTHY We describe and validate a new approach for measuring free cytosolic NADH/NAD+ratio in hepatocytes and liver slices: live cell imaging with the fluorescent biosensor Peredox. This approach yields dynamic, real-time measurements of the ratio in living, functioning liver cells, overcoming many limitations of previous methods for measuring this important redox parameter. The feasibility of using Peredox in liver slices is particularly attractive because slices allow preservation of hepatic microanatomy and metabolic zonation of hepatocytes.
- Published
- 2018
- Full Text
- View/download PDF
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