237 results on '"Mair R"'
Search Results
2. Evolutionary dynamics of residual disease in human glioblastoma
- Author
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Spiteri, I., Caravagna, G., Cresswell, G.D., Vatsiou, A., Nichol, D., Acar, A., Ermini, L., Chkhaidze, K., Werner, B., Mair, R., Brognaro, E., Verhaak, R.G.W., Sanguinetti, G., Piccirillo, S.G.M., Watts, C., and Sottoriva, A.
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- 2019
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3. Hyperpolarized Long-T1 Silicon Nanoparticles for Magnetic Resonance Imaging
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Aptekar, J. W., Cassidy, M. C., Johnson, A. C., Barton, R. A., Lee, M. Y., Ogier, A. C., Vo, C., Anahtar, M. N., Ren, Y., Bhatia, S. N., Ramanathan, C., Cory, D. G., Hill, A. L., Mair, R. W., Rosen, M. S., Walsworth, R. L., and Marcus, C. M.
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Condensed Matter - Materials Science ,Condensed Matter - Mesoscale and Nanoscale Physics - Abstract
Silicon nanoparticles are experimentally investigated as a potential hyperpolarized, targetable MRI imaging agent. Nuclear T_1 times at room temperature for a variety of Si nanoparticles are found to be remarkably long (10^2 to 10^4 s) - roughly consistent with predictions of a core-shell diffusion model - allowing them to be transported, administered and imaged on practical time scales without significant loss of polarization. We also report surface functionalization of Si nanoparticles, comparable to approaches used in other biologically targeted nanoparticle systems., Comment: supporting material here: http://marcuslab.harvard.edu/Aptekar_hyper1_sup.pdf
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- 2009
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4. Posture-Dependent Human 3He Lung Imaging in an Open Access MRI System: Initial Results
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Tsai, L. L., Mair, R. W., Li, C. -H., Rosen, M. S., Patz, S., and Walsworth, R. L.
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Physics - Medical Physics - Abstract
The human lung and its functions are extremely sensitive to orientation and posture, and debate continues as to the role of gravity and the surrounding anatomy in determining lung function and heterogeneity of perfusion and ventilation. However, study of these effects is difficult. The conventional high-field magnets used for most hyperpolarized 3He MRI of the human lung, and most other common radiological imaging modalities including PET and CT, restrict subjects to lying horizontally, minimizing most gravitational effects. In this paper, we briefly review the motivation for posture-dependent studies of human lung function, and present initial imaging results of human lungs in the supine and vertical body orientations using inhaled hyperpolarized 3He gas and an open-access MRI instrument. The open geometry of this MRI system features a "walk-in" capability that permits subjects to be imaged in vertical and horizontal positions, and potentially allows for complete rotation of the orientation of the imaging subject in a two-dimensional plane. Initial results include two-dimensional lung images acquired with ~ 4 mm in-plane resolution and three-dimensional images with ~ 1.5 cm slice thickness. Effects of posture variation are observed., Comment: single pdf file in manuscript format, 35 pages, 5 figures Submitted to Academic Radiology
- Published
- 2007
5. Using NMR to Validate First-Principles Granular Flow Equations
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Candela, D., Huan, C., Facto, K., Wang, R., Mair, R. W., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter - Abstract
Nuclear magnetic resonance (NMR) experiments are described for two granular-flow systems, the vibrofluidized bed and the gas-fluidized bed. Using pulsed field gradient, magnetic resonance imaging, and hyperpolarized gas NMR, detailed information is obtained for the density and motions of both grains and interstitial gas. For the vibrofluidized bed, the granular temperature profile is measured and compared with a first-principles formulation of granular hydrodynamics. For the gas-fluidized bed, dynamic correlations in the grain density are used to measure the bubble velocity and hyperpolarized xenon gas NMR is used to measure the bubble-emulsion exchange rate. A goal of these measurements is to verify in earth gravity first-principles theories of granular flows, which then can be used to make concrete predictions for granular flows in reduced gravity., Comment: 6 pages, 9 figures
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- 2005
6. Xenon NMR Measurements of Permeability and Tortuosity in Reservoir Rocks
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Wang, R., Pavlin, T., Rosen, M. S., Mair, R. W., Cory, D. G., and Walsworth, R. L.
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Condensed Matter - Materials Science - Abstract
In this work we present measurements of permeability, effective porosity and tortuosity on a variety of rock samples using NMR/MRI of thermal and laser-polarized gas. Permeability and effective porosity are measured simultaneously using MRI to monitor the inflow of laser-polarized xenon into the rock core. Tortuosity is determined from measurements of the time-dependent diffusion coefficient using thermal xenon in sealed samples. The initial results from a limited number of rocks indicate inverse correlations between tortuosity and both effective porosity and permeability. Further studies to widen the number of types of rocks studied may eventually aid in explaining the poorly understood connection between permeability and tortuosity of rock cores., Comment: 9 pages, includes 3 figures. submitted for publication in MaIn this work we present measurements of permeability, effective porosity and tortuosity on a variety of rockgnetic Resonance Imaging
- Published
- 2004
7. Study of Gas-Fluidization Dynamics with Laser-Polarized 129Xe
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Wang, R., Rosen, M. S., Candela, D., Mair, R. W., and Walsworth, R. L.
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Condensed Matter - Materials Science - Abstract
We report initial NMR studies of gas dynamics in a particle bed fluidized by laser-polarized xenon (129Xe) gas. We have made preliminary measurements of two important characteristics: gas exchange between the bubble and emulsion phases; and the gas velocity distribution in the bed. We used T2* contrast to differentiate the bubble and emulsion phases by choosing solid particles with large magnetic susceptibility, in order. Experimental tests demonstrated that this method was successful in eliminating 129Xe magnetization in the emulsion phase, which enabled us to observe the time-dependence of the bubble magnetization. By employing the pulsed field gradient method, we also measured the gas velocity distribution within the bed. These results clearly show the onset of bubbling and can be used to deduce information about gas and particle motion in the fluidized bed., Comment: 12 pages, includes 5 figures. accepted for publication in Magnetic Resonance Imaging
- Published
- 2004
8. 3He Lung Imaging in an Open Access, Very-Low-Field Human MRI System
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Mair, R. W., Hrovat, M. I., Patz, S., Rosen, M. S., Ruset, I. C., Topulos, G. P., Tsai, L. L., Butler, J. P., Hersman, F. W., and Walsworth, R. L.
- Subjects
Physics - Medical Physics ,Physics - Instrumentation and Detectors - Abstract
The human lung and its functions are extremely sensitive to gravity, however the conventional high-field magnets used for most laser-polarized 3He MRI of the human lung restrict subjects to lying horizontally. Imaging of human lungs using inhaled laser-polarized 3He gas is demonstrated in an open-access very-low-magnetic-field (< 5 mT) MRI instrument. This prototype device employs a simple, low-cost electromagnet, with an open geometry that allows variation of the orientation of the imaging subject in a two-dimensional plane. As a demonstration, two-dimensional lung images were acquired with 4 mm in-plane resolution from a subject in two orientations: lying supine, and sitting in a vertical position with one arm raised. Experience with this prototype device will guide optimization of a second-generation very-low-field imager to enable studies of human pulmonary physiology as a function of subject orientation., Comment: single pdf file, approx 19 pages double spaced, including 3 figures. accepted for publication in Magnetic Resonance in Medicine. Magnetic Resonance in Medicine, accepted for publication 2004
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- 2004
9. Simultaneous Measurement of Rock Permeability and Effective Porosity using Laser-Polarized Noble Gas NMR
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Wang, R., Mair, R. W., Rosen, M. S., Cory, D. G., and Walsworth, R. L.
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Condensed Matter - Materials Science - Abstract
We report simultaneous measurements of the permeability and effective porosity of oil-reservoir rock cores using one-dimensional NMR imaging of the penetrating flow of laser-polarized xenon gas. The permeability result agrees well with industry standard techniques, whereas effective porosity is not easily determined by other methods. This novel NMR technique may have applications to the characterization of fluid flow in a wide variety of porous and granular media., Comment: 19 pages, 4 figures, 1 table, pdf format only
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- 2003
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10. NMR Experiments on a Three-Dimensional Vibrofluidized Granular Medium
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Huan, Chao, Yang, Xiaoyu, Candela, D., Mair, R. W., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter - Abstract
A three-dimensional granular system fluidized by vertical container vibrations was studied using pulsed field gradient (PFG) NMR coupled with one-dimensional magnetic resonance imaging (MRI). The system consisted of mustard seeds vibrated vertically at 50 Hz, and the number of layers N_ell <= 4 was sufficiently low to achieve a nearly time-independent granular fluid. Using NMR, the vertical profiles of density and granular temperature were directly measured, along with the distributions of vertical and horizontal grain velocities. The velocity distributions showed modest deviations from Maxwell-Boltzmann statistics, except for the vertical velocity distribution near the sample bottom which was highly skewed and non-Gaussian. Data taken for three values of N_ell and two dimensionless accelerations Gamma=15,18 were fit to a hydrodynamic theory, which successfully models the density and temperature profiles including a temperature inversion near the free upper surface., Comment: 14 pages, 15 figures
- Published
- 2003
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11. Tortuosity Measurement and the Effects of Finite Pulse Widths on Xenon Gas Diffusion NMR Studies of Porous Media
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Mair, R. W., Hurlimann, M. D., Sen, P. N., Schwartz, L. M., Patz, S., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
We have extended the utility of NMR as a technique to probe porous media structure over length scales of ~ 100 - 2000 micron by using the spin 1/2 noble gas 129Xe imbibed into the system's pore space. Such length scales are much greater than can be probed with NMR diffusion studies of water-saturated porous media. We utilized Pulsed Gradient Spin Echo NMR measurements of the time-dependent diffusion coefficient, D(t) of the xenon gas filling the pore space to study further the measurements of both the surface area-pore volume ratio, S/Vp, and the tortuosity (pore connectivity) of the medium. In uniform-size glass bead packs, we observed D(t) decreasing with increasing t, reaching an observed asymptote of ~ 0.62 - 0.65D0, that could be measured over diffusion distances extending over multiple bead diameters. Measurements of D(t)/D0 at differing gas pressures showed this tortuosity limit was not affected by changing the characteristic diffusion length of the spins during the diffusion encoding gradient pulse. This was not the case at the short time limit, where D(t)/D0 was noticeably affected by the gas pressure in the sample. Increasing the gas pressure, and hence reducing D0 and the diffusion during the gradient pulse served to reduce the previously observed deviation of D(t)/D0 from the S/Vp relation. The Pade approximation is used to interpolate between the long and short time limits in D(t). While the short time D(t) point lay above the interpolation line in the case of small beads, due to diffusion during the gradient pulse on the order of the pore size, it was also noted that the experimental D(t) data fell below the Pade line in the case of large beads, most likely due to finite size effects., Comment: single pdf file containing all figures
- Published
- 2002
12. Diffusion NMR Methods Applied to Xenon Gas for Materials Study
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Mair, R. W., Rosen, M. S., Wang, R., Cory, D. G., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
We report initial NMR studies of i) xenon gas diffusion in model heterogeneous porous media, and ii) continuous flow laser-polarized xenon gas. Both areas utilize the Pulsed Gradient Spin Echo techniques in the gas-phase, with the aim of obtaining more sophisticated information than just translational self-diffusion coefficients - a brief overview of this area is provided in the introduction. The heterogeneous or multiple-length scale model porous media consisted of random packs of mixed glass beads of two different sizes. We focus on observing the approach of the time-dependent gas diffusion coefficient, D(t), (an indicator of mean squared displacement) to the long-time asymptote, with the aim of understanding the long-length scale structural information that may be derived from a heterogeneous porous system. The Pade approximation is used to interpolate D(t) data between the short and long time limits. Initial studies of continuous flow laser-polarized xenon gas demonstrate velocity-sensitive imaging of much higher flows than can generally be obtained with liquids (20 - 200 mm/s). Gas velocity imaging is, however, found to be limited to a resolution of about 1 mm/s due to the high diffusivity of gases compared to liquids. We also present the first gas-phase NMR scattering, or diffusive-diffraction, data: namely, flow-enhanced structural features in the echo attenuation data from laser-polarized xenon flowing through a 2 mm glass bead pack., Comment: single pdf file including all figures
- Published
- 2002
13. Applications of controlled-flow laser-polarized xenon gas to porous and granular media study
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Mair, R. W., Wang, R., Rosen, M. S., Candela, D., Cory, D. G., and Walsworth, R. L.
- Subjects
Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
We report initial NMR studies of continuous flow laser-polarized xenon gas, both in unrestricted tubing, and in a model porous media. The study uses Pulsed Gradient Spin Echo-based techniques in the gas-phase, with the aim of obtaining more sophisticated information than just translational self-diffusion coefficients. Pulsed Gradient Echo studies of continuous flow laser-polarized xenon gas in unrestricted tubing indicate clear diffraction minima resulting from a wide distribution of velocities in the flow field. The maximum velocity experienced in the flow can be calculated from this minimum, and is seen to agree with the information from the complete velocity spectrum, or motion propagator, as well as previously published images. The susceptibility of gas flows to parameters such as gas mixture content, and hence viscosity, are observed in experiments aimed at identifying clear structural features from echo attenuation plots of gas flow in porous media. Gas-phase NMR scattering, or position correlation flow-diffraction, previously clearly seen in the echo attenuation data from laser-polarized xenon flowing through a 2 mm glass bead pack is not so clear in experiments using a different gas mixture. A propagator analysis shows most gas in the sample remains close to static, while a small portion moves through a presumably near-unimpeded path at high velocities., Comment: single pdf file including all figures, in press at "Magnetic Resonance Imaging"
- Published
- 2002
14. The Narrow Pulse Approximation and long length scale determination in xenon gas diffusion NMR studies of model porous media
- Author
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Mair, R. W., Sen, P. N., Hurlimann, M. D., Patz, S., Cory, D. G., and Walsworth, R. L.
- Subjects
Condensed Matter - Soft Condensed Matter ,Condensed Matter - Materials Science - Abstract
We report a systematic study of xenon gas diffusion NMR in simple model porous media: random packs of mono-sized glass beads, and focus on three specific areas peculiar to gas-phase diffusion. These topics are: (i) diffusion of spins on the order of the pore dimensions during the application of the diffusion encoding gradient pulses in a PGSE experiment (breakdown of the 'narrow pulse approximation' and imperfect background gradient cancellation), (ii) the ability to derive long-length scale structural information, and (iii) effects of finite sample size. We find that the time-dependent diffusion coefficient, D(t), of the imbibed xenon gas at short diffusion times in small beads is significantly affected by the gas pressure. In particular, as expected, we find smaller deviations between measured D(t) and theoretical predictions as the gas pressure is increased, resulting from reduced diffusion during the application of the gradient pulse. The deviations are then completely removed when water D(t) is observed in the same samples. The use of gas also allows us to probe D(t) over a wide range of length scales, and observe the long-time asymptotic limit which is proportional to the inverse tortuosity of the sample, as well as the diffusion distance where this limit takes effect (~ 1 - 1.5 bead diameters). The Pade approximation can be used as a reference for expected xenon D(t) data between the short and long time limits, allowing us to explore deviations from the expected behaviour at intermediate times as a result of finite sample size effects. Finally, the application of the Pade interpolation between the long and short time asymptotic limits yields a fitted length scale (the "Pade length"), which is found to be ~ 0.13b for all bead packs, where b is the bead diameter., Comment: single pdf file including figures
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- 2002
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15. Measuring surface-area-to-volume ratios in soft porous materials using laser-polarized xenon interphase exchange NMR
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Butler, J. P., Mair, R. W., Patz, S., Hoffmann, D., Hrovat, M. I., Rogers, R. A., Topulos, G. P., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter - Abstract
We demonstrate a minimally invasive nuclear magnetic resonance (NMR) technique that enables determination of the surface-area-to-volume ratio (S/V) of soft porous materials from measurements of the diffusive exchange of laser-polarized 129Xe between gas in the pore space and 129Xe dissolved in the solid phase. We apply this NMR technique to porous polymer samples and find approximate agreement with destructive stereological measurements of S/V obtained with optical confocal microscopy. Potential applications of laser-polarized xenon interphase exchange NMR include measurements of in vivo lung function in humans and characterization of gas chromatography columns., Comment: 14 pages of text, 4 figures
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- 2001
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16. Measurements of Grain Motion in a Dense, Three-Dimensional Granular Fluid
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Yang, Xiaoyu, Huan, Chao, Candela, D., Mair, R. W., and Walsworth, R. L.
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Condensed Matter - Soft Condensed Matter ,Condensed Matter - Statistical Mechanics - Abstract
We have used an NMR technique to measure the short-time, three-dimensional displacement of grains in a system of mustard seeds vibrated vertically at 15g. The technique averages over a time interval in which the grains move ballistically, giving a direct measurement of the granular temperature profile. The dense, lower portion of the sample is well described by a recent hydrodynamic theory for inelastic hard spheres. Near the free upper surface the mean free path is longer than the particle diameter and the hydrodynamic description fails., Comment: 4 pages, 4 figures
- Published
- 2001
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17. Valvuloplasty in 103 fetuses with critical aortic stenosis: outcome and new predictors for postnatal circulation
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Tulzer, A., primary, Arzt, W., additional, Gitter, R., additional, Sames‐Dolzer, E., additional, Kreuzer, M., additional, Mair, R., additional, and Tulzer, G., additional
- Published
- 2022
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18. From pilot study to practice: Integrating medical students into COVID-19 contact tracing in a hospital setting
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Mohamed Morgan, Oscar Han, Katie Hullock, Steve Pagden, Mair Richards, and Rachel Foster
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Medical education ,Pandemic ,COVID-19 ,Contact tracing ,Public health ,Community engagement ,Medicine - Abstract
This paper addresses a timely and significant issue in the context of the COVID-19 pandemic. Contact tracing played a crucial role in reducing transmission rates. The challenges faced in inpatient settings are valuable to explore. A pilot study involving medical students revealed gaps in engagement with the NHS Test and Trace service. An Inpatient Contact Tracing Team (IPCT) was formed to address this issue. Medical students later assisted in contact tracing.The study was conducted from September to November 2021 and involved 305 inpatients with COVID-19.This initiative demonstrates the benefits of involving medical students in inpatient contact tracing for public health gain and education. The students also engaged in community initiatives, addressing barriers to vaccination in disadvantaged areas. A demographic analysis revealed patterns which guided vaccine education efforts by the IPCT.This collaboration between healthcare professionals and medical students showcases the adaptability of medical education in the face of global health challenges.
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- 2025
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19. Fetal aortic valvuloplasty: investigating institutional bias in surgical decision-making
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Kovacevic, A., Roughton, M., Mellander, M., Öhman, A., Tulzer, G., Dangel, J., Magee, A. G., Mair, R., Ghez, O., Schmidt, K. G., and Gardiner, H. M.
- Published
- 2014
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20. Inactivation of VicK affects acid production and acid survival of Streptococcus mutans
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Senadheera, D., Krastel, K., Mair, R., Persadmehr, A., Abranches, J., Burne, R.A., and Cvitkovitch, Dennis G.
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Streptococcus -- Physiological aspects ,Streptococcus -- Genetic aspects ,Streptococcus -- Research ,Virulence (Microbiology) -- Genetic aspects ,Virulence (Microbiology) -- Research ,Hydrogen-ion concentration -- Physiological aspects ,Hydrogen-ion concentration -- Genetic aspects ,Biological sciences - Abstract
The regulation of acid production in and the tolerance to low pH of the cariogenic bacterium Streptococcus mutans have garnered considerable attention since both of these properties contribute substantially to the virulence of this organism. Frequent or prolonged exposure to acid end products, mainly lactic acid, that are present following the consumption of dietary sugars erodes the dental enamel, thereby initiating dental caries. Here we report the involvement of the S. mutans VicK sensor kinase in both the acidogenicity and the aciduricity of this bacterium. When cultures were supplemented with glucose, the glycolytic rate of a VicK null mutant was significantly decreased compared to the glycolytic rate of the wild type (P < 0.05), suggesting that there was impaired acid production. Not surprisingly, the VicK deletion mutant produced less lactic acid, while an acid tolerance response assay revealed that loss of VicK significantly enhanced the survival of S. mutaus (P < 0.05). Compared to the survival rates of the wild type, the survival rates of the VicK-deficient mutant were drastically increased when cultures were grown at pH 3.5 with or without preexposure to a signal pH (pH 5.5). Global transcriptional analysis using DNA microarrays and S. mutans wild-type UA159 and VicK deletion mutant strains grown at neutral and low pH values revealed that loss of VicK significantly affected expression of 89 transcripts more than twofold at pH 5.5 (P < 0.001). The affected transcripts included genes with putative functions in transport and maintenance of cell membrane integrity. While our results provide insight into the acid-inducible regulon of S. mutans, here we imply a novel role for VicK in regulating intracellular pH homeostasis in S. mutans. doi: 10.1128/JB.00793-09
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- 2009
21. Acid-stress-induced changes in enterohaemorrhagic Escherichia coli O157 : H7 virulence
- Author
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House, B., Kus, J.V., Prayitno, N., Mair, R., Que, L., Chingcuanco, F., Gannon, V., Cvitkovitch, D.G., and Foster, D. Barnett
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DNA microarrays -- Usage ,Escherichia coli -- Health aspects ,Escherichia coli -- Genetic aspects ,Escherichia coli -- Research ,Gastrointestinal diseases -- Risk factors ,Gastrointestinal diseases -- Genetic aspects ,Gastrointestinal diseases -- Care and treatment ,Gastrointestinal diseases -- Research ,Biological sciences - Abstract
Enterohaemorrhagic Escherichia coli (EHEC) O157 : H7 is naturally exposed to a wide variety of stresses including gastric acid shock, and yet little is known about how this stress influences virulence. This study investigated the impact of acid stress on several critical virulence properties including survival, host adhesion, Shiga toxin production, motility and induction of host-cell apoptosis. Several acid-stress protocols with relevance for gastric passage as well as external environmental exposure were included. Acute acid stress at pH 3 preceded by acid adaptation at pH 5 significantly enhanced the adhesion of surviving organisms to epithelial cells and bacterial induction of host-cell apoptosis. Motility was also significantly increased after acute acid stress. Interestingly, neither secreted nor periplasmic levels of Shiga toxin were affected by acid shock. Pretreatment of bacteria with erythromycin eliminated the acid-induced adhesion enhancement, suggesting that de novo protein synthesis was required for the enhanced adhesion of acid-shocked organisms. DNA microarray was used to analyse the transcriptome of an EHEC O157 : H7 strain exposed to three different acid-stress treatments. Expression profiles of acid-stressed EHEC revealed significant changes in virulence factors associated with adhesion, motility and type III secretion. These results document profound changes in the virulence properties of EHEC O157 : H7 after acid stress, provide a comprehensive genetic analysis to substantiate these changes and suggest strategies that this pathogen may use during gastric passage and colonization in the human gastrointestinal tract.
- Published
- 2009
22. NMR measurements of grain and gas motion in a gas-fluidized granular bed
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Candela, D., Huan, C., Facto, K., Wang, R., Mair, R. W., and Walsworth, R. L.
- Published
- 2007
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23. Fragmentation patterns and personalized sequencing of cell-free DNA in urine and plasma of glioma patients
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Mouliere, F, Smith, CG, Heider, K, Su, J, van der Pol, Y, Thompson, M, Morris, J, Wan, JCM, Chandrananda, D, Hadfield, J, Grzelak, M, Hudecova, I, Couturier, D-L, Cooper, W, Zhao, H, Gale, D, Eldridge, M, Watts, C, Brindle, K, Rosenfeld, N, Mair, R, Mouliere, F, Smith, CG, Heider, K, Su, J, van der Pol, Y, Thompson, M, Morris, J, Wan, JCM, Chandrananda, D, Hadfield, J, Grzelak, M, Hudecova, I, Couturier, D-L, Cooper, W, Zhao, H, Gale, D, Eldridge, M, Watts, C, Brindle, K, Rosenfeld, N, and Mair, R
- Abstract
Glioma-derived cell-free DNA (cfDNA) is challenging to detect using liquid biopsy because quantities in body fluids are low. We determined the glioma-derived DNA fraction in cerebrospinal fluid (CSF), plasma, and urine samples from patients using sequencing of personalized capture panels guided by analysis of matched tumor biopsies. By sequencing cfDNA across thousands of mutations, identified individually in each patient's tumor, we detected tumor-derived DNA in the majority of CSF (7/8), plasma (10/12), and urine samples (10/16), with a median tumor fraction of 6.4 × 10-3 , 3.1 × 10-5 , and 4.7 × 10-5 , respectively. We identified a shift in the size distribution of tumor-derived cfDNA fragments in these body fluids. We further analyzed cfDNA fragment sizes using whole-genome sequencing, in urine samples from 35 glioma patients, 27 individuals with non-malignant brain disorders, and 26 healthy individuals. cfDNA in urine of glioma patients was significantly more fragmented compared to urine from patients with non-malignant brain disorders (P = 1.7 × 10-2 ) and healthy individuals (P = 5.2 × 10-9 ). Machine learning models integrating fragment length could differentiate urine samples from glioma patients (AUC = 0.80-0.91) suggesting possibilities for truly non-invasive cancer detection.
- Published
- 2021
24. Activated thrombelastogram in neonates and infants with complex congenital heart disease in comparison with healthy children
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Haizinger, B., Gombotz, H., Rehak, P., Geiselseder, G., and Mair, R.
- Published
- 2006
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25. Centrifugal modelling of tunnel construction in soft clay
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Mair, R. J.
- Subjects
624.15 - Published
- 1980
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26. Tunnelling and geotechnics: new horizons. Vote of thanks
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Mair, R. and Gens, Antonio
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Engineering, Manufacturing ,Engineering, Mechanical ,Engineering, Civil ,Engineering, Industrial ,Engineering, Multidisciplinary ,Engineering, Ocean ,Computer Science, Software Engineering ,Engineering, Aerospace ,Engineering, Biomedical ,Engineering, Marine - Abstract
New developments in both the theory and the practice of tunnelling are covered in the lecture. The important relationship between tunnelling and geotechnics is highlighted, and recent advances in research and practice are described, drawing on model studies, theoretical developments and field measurements from case histories from around the world. Simplified plasticity models are presented that can be used by designers to assess ground movements and tunnel lining loads in complex ground conditions. The important role of pilot tunnels and in situ measurements to validate such models, drawing on a case history from Bolu, Turkey, and on other tunnelling projects, is described. Recent technical advances in earth pressure balance tunnelling are considered, illustrated by measurements from the Channel Tunnel Rail Link project, with emphasis on key factors influencing volume loss, such as face pressure, soil conditioning and effective screw conveyor operation. A recent case history in Bologna is described, in which the innovative use of directional drilling to install curved grout tubes was employed for a compensation grouting project in granular soils. Time-dependent ground movements and tunnel lining distortions occurring after tunnelling are discussed, their magnitude depending on the relative permeability of the tunnel lining and soil, the degree of anisotropy of the soil permeability, and the initial pore pressure prior to tunnelling. The effects of tunnelling-induced settlements on pipelines are considered, drawing on centrifuge tests and analytical solutions, and a new design approach is presented, taking into account the reduction of soil stiffness with increasing shear strain as a result of tunnel volume loss. The lecture concludes with a description of a distributed strain sensing technique using fibre optic technology, based on Brillouin optical time domain reflectometry (BOTDR), and its innovative application to field monitoring of a masonry tunnel subjected to new tunnel construction beneath it.
- Published
- 2020
27. ctDNA monitoring using patient-specific sequencing and integration of variant reads
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Wan, JCM, Heider, K, Gale, D, Murphy, S, Fisher, E, Mouliere, F, Ruiz-Valdepenas, A, Santonja, A, Morris, J, Chandrananda, D, Marshall, A, Gill, AB, Chan, PY, Barker, E, Young, G, Cooper, WN, Hudecova, I, Marass, F, Mair, R, Brindle, KM, Stewart, GD, Abraham, JE, Caldas, C, Rassl, DM, Rintoul, RC, Alifrangis, C, Middleton, MR, Gallagher, FA, Parkinson, C, Durrani, A, McDermott, U, Smith, CG, Massie, C, Corrie, PG, Rosenfeld, N, Wan, JCM, Heider, K, Gale, D, Murphy, S, Fisher, E, Mouliere, F, Ruiz-Valdepenas, A, Santonja, A, Morris, J, Chandrananda, D, Marshall, A, Gill, AB, Chan, PY, Barker, E, Young, G, Cooper, WN, Hudecova, I, Marass, F, Mair, R, Brindle, KM, Stewart, GD, Abraham, JE, Caldas, C, Rassl, DM, Rintoul, RC, Alifrangis, C, Middleton, MR, Gallagher, FA, Parkinson, C, Durrani, A, McDermott, U, Smith, CG, Massie, C, Corrie, PG, and Rosenfeld, N
- Abstract
Circulating tumor-derived DNA (ctDNA) can be used to monitor cancer dynamics noninvasively. Detection of ctDNA can be challenging in patients with low-volume or residual disease, where plasma contains very few tumor-derived DNA fragments. We show that sensitivity for ctDNA detection in plasma can be improved by analyzing hundreds to thousands of mutations that are first identified by tumor genotyping. We describe the INtegration of VAriant Reads (INVAR) pipeline, which combines custom error-suppression methods and signal-enrichment approaches based on biological features of ctDNA. With this approach, the detection limit in each sample can be estimated independently based on the number of informative reads sequenced across multiple patient-specific loci. We applied INVAR to custom hybrid-capture sequencing data from 176 plasma samples from 105 patients with melanoma, lung, renal, glioma, and breast cancer across both early and advanced disease. By integrating signal across a median of >105 informative reads, ctDNA was routinely quantified to 1 mutant molecule per 100,000, and in some cases with high tumor mutation burden and/or plasma input material, to parts per million. This resulted in median area under the curve (AUC) values of 0.98 in advanced cancers and 0.80 in early-stage and challenging settings for ctDNA detection. We generalized this method to whole-exome and whole-genome sequencing, showing that INVAR may be applied without requiring personalized sequencing panels so long as a tumor mutation list is available. As tumor sequencing becomes increasingly performed, such methods for personalized cancer monitoring may enhance the sensitivity of cancer liquid biopsies.
- Published
- 2020
28. Invasive intrauterine treatment of pulmonary atresia/intact ventricular septum with heart failure
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ARZT, W., TULZER, G., AIGNER, M., MAIR, R., and HAFNER, E.
- Published
- 2003
29. Semantics of metaphorical statements: paradigm of metaphors in the contemporary analytical philosophy
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Mair R. Makhaev
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Analytic philosophy ,Philosophy ,Semantics ,Linguistics ,Epistemology - Published
- 2016
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30. Diffusion NMR methods applied to xenon gas for materials study
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Mair, R. W, Rosen, M. S, Wang, R, Cory, D. G, and Walsworth, R. L
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Life Sciences (General) - Abstract
We report initial NMR studies of (i) xenon gas diffusion in model heterogeneous porous media and (ii) continuous flow laser-polarized xenon gas. Both areas utilize the pulsed gradient spin-echo (PGSE) techniques in the gas phase, with the aim of obtaining more sophisticated information than just translational self-diffusion coefficients--a brief overview of this area is provided in the Introduction. The heterogeneous or multiple-length scale model porous media consisted of random packs of mixed glass beads of two different sizes. We focus on observing the approach of the time-dependent gas diffusion coefficient, D(t) (an indicator of mean squared displacement), to the long-time asymptote, with the aim of understanding the long-length scale structural information that may be derived from a heterogeneous porous system. We find that D(t) of imbibed xenon gas at short diffusion times is similar for the mixed bead pack and a pack of the smaller sized beads alone, hence reflecting the pore surface area to volume ratio of the smaller bead sample. The approach of D(t) to the long-time limit follows that of a pack of the larger sized beads alone, although the limiting D(t) for the mixed bead pack is lower, reflecting the lower porosity of the sample compared to that of a pack of mono-sized glass beads. The Pade approximation is used to interpolate D(t) data between the short- and long-time limits. Initial studies of continuous flow laser-polarized xenon gas demonstrate velocity-sensitive imaging of much higher flows than can generally be obtained with liquids (20-200 mm s-1). Gas velocity imaging is, however, found to be limited to a resolution of about 1 mm s-1 owing to the high diffusivity of gases compared with liquids. We also present the first gas-phase NMR scattering, or diffusive-diffraction, data, namely flow-enhanced structural features in the echo attenuation data from laser-polarized xenon flowing through a 2 mm glass bead pack. c2002 John Wiley & Sons, Ltd.
- Published
- 2002
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31. Measurement of persistence in 1D diffusion
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Wong, G. P, Mair, R. W, Walsworth, R. L, and Cory, D. G
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Life Sciences (General) - Abstract
Using a novel NMR scheme we observed persistence in 1D gas diffusion. Analytical approximations and numerical simulations have indicated that for an initially random array of spins undergoing diffusion, the probability p(t) that the average spin magnetization in a given region has not changed sign (i.e., "persists") up to time t follows a power law t(-straight theta), where straight theta depends on the dimensionality of the system. Using laser-polarized 129Xe gas, we prepared an initial "quasirandom" 1D array of spin magnetization and then monitored the ensemble's evolution due to diffusion using real-time NMR imaging. Our measurements are consistent with analytical and numerical predictions of straight theta approximately 0.12.
- Published
- 2001
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32. Tortuosity measurement and the effects of finite pulse widths on xenon gas diffusion NMR studies of porous media
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Mair, R. W, Hurlimann, M. D, Sen, P. N, Schwartz, L. M, Patz, S, and Walsworth, R. L
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Life Sciences (General) - Abstract
We have extended the utility of NMR as a technique to probe porous media structure over length scales of approximately 100-2000 microm by using the spin 1/2 noble gas 129Xe imbibed into the system's pore space. Such length scales are much greater than can be probed with NMR diffusion studies of water-saturated porous media. We utilized Pulsed Gradient Spin Echo NMR measurements of the time-dependent diffusion coefficient, D(t), of the xenon gas filling the pore space to study further the measurements of both the pore surface-area-to-volume ratio, S/V(p), and the tortuosity (pore connectivity) of the medium. In uniform-size glass bead packs, we observed D(t) decreasing with increasing t, reaching an observed asymptote of approximately 0.62-0.65D(0), that could be measured over diffusion distances extending over multiple bead diameters. Measurements of D(t)/D(0) at differing gas pressures showed this tortuosity limit was not affected by changing the characteristic diffusion length of the spins during the diffusion encoding gradient pulse. This was not the case at the short time limit, where D(t)/D(0) was noticeably affected by the gas pressure in the sample. Increasing the gas pressure, and hence reducing D(0) and the diffusion during the gradient pulse served to reduce the previously observed deviation of D(t)/D(0) from the S/V(p) relation. The Pade approximation is used to interpolate between the long and short time limits in D(t). While the short time D(t) points lay above the interpolation line in the case of small beads, due to diffusion during the gradient pulse on the order of the pore size, it was also noted that the experimental D(t) data fell below the Pade line in the case of large beads, most likely due to finite size effects.
- Published
- 2001
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33. Reduced xenon diffusion for quantitative lung study--the role of SF(6)
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Mair, R. W, Hoffmann, D, Sheth, S. A, Wong, G. P, Butler, J. P, Patz, S, Topulos, G. P, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
The large diffusion coefficients of gases result in significant spin motion during the application of gradient pulses that typically last a few milliseconds in most NMR experiments. In restricted environments, such as the lung, this rapid gas diffusion can lead to violations of the narrow pulse approximation, a basic assumption of the standard Stejskal-Tanner NMR method of diffusion measurement. We therefore investigated the effect of a common, biologically inert buffer gas, sulfur hexafluoride (SF(6)), on (129)Xe NMR and diffusion. We found that the contribution of SF(6) to (129)Xe T(1) relaxation in a 1:1 xenon/oxygen mixture is negligible up to 2 bar of SF(6) at standard temperature. We also measured the contribution of SF(6) gas to (129)Xe T(2) relaxation, and found it to scale inversely with pressure, with this contribution approximately equal to 1 s for 1 bar SF(6) pressure and standard temperature. Finally, we found the coefficient of (129)Xe diffusion through SF(6) to be approximately 4.6 x 10(-6) m(2)s(-1) for 1 bar pressure of SF(6) and standard temperature, which is only 1.2 times smaller than the (129)Xe self diffusion coefficient for 1 bar (129)Xe pressure and standard temperature. From these measurements we conclude that SF(6) will not sufficiently reduce (129)Xe diffusion to allow accurate surface-area/volume ratio measurements in human alveoli using time-dependent gas diffusion NMR.
- Published
- 2000
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34. Magnetic resonance imaging of convection in laser-polarized xenon
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Mair, R. W, Tseng, C. H, Wong, G. P, Cory, D. G, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
We demonstrate nuclear magnetic resonance (NMR) imaging of the flow and diffusion of laser-polarized xenon (129Xe) gas undergoing convection above evaporating laser-polarized liquid xenon. The large xenon NMR signal provided by the laser-polarization technique allows more rapid imaging than one can achieve with thermally polarized gas-liquid systems, permitting shorter time-scale events such as rapid gas flow and gas-liquid dynamics to be observed. Two-dimensional velocity-encoded imaging shows convective gas flow above the evaporating liquid xenon, and also permits the measurement of enhanced gas diffusion near regions of large velocity variation.
- Published
- 2000
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35. A system for low field imaging of laser-polarized noble gas
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Wong, G. P, Tseng, C. H, Pomeroy, V. R, Mair, R. W, Hinton, D. P, Hoffmann, D, Stoner, R. E, Hersman, F. W, Cory, D. G, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
We describe a device for performing MRI with laser-polarized noble gas at low magnetic fields (<50 G). The system is robust, portable, inexpensive, and provides gas-phase imaging resolution comparable to that of high field clinical instruments. At 20.6 G, we have imaged laser-polarized (3)He (Larmor frequency of 67 kHz) in both sealed glass cells and excised rat lungs, using approximately 0.1 G/cm gradients to achieve approximately 1 mm(2) resolution. In addition, we measured (3)He T(2)(*) times greater than 100 ms in excised rat lungs, which is roughly 20 times longer than typical values observed at high ( approximately 2 T) fields. We include a discussion of the practical considerations for working at low magnetic fields and conclude with evidence of radiation damping in this system. Copyright 1999 Academic Press.
- Published
- 1999
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36. Probing porous media with gas diffusion NMR
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Mair, R. W, Wong, G. P, Hoffmann, D, Hurlimann, M. D, Patz, S, Schwartz, L. M, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
We show that gas diffusion nuclear magnetic resonance (GD-NMR) provides a powerful technique for probing the structure of porous media. In random packs of glass beads, using both laser-polarized and thermally polarized xenon gas, we find that GD-NMR can accurately measure the pore space surface-area-to-volume ratio, S/V rho, and the tortuosity, alpha (the latter quantity being directly related to the system's transport properties). We also show that GD-NMR provides a good measure of the tortuosity of sandstone and complex carbonate rocks.
- Published
- 1999
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37. Single-shot diffusion measurement in laser-polarized Gas
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Peled, S, Tseng, C. H, Sodickson, A. A, Mair, R. W, Walsworth, R. L, and Cory, D. G
- Subjects
Life Sciences (General) - Abstract
A single-shot pulsed gradient stimulated echo sequence is introduced to address the challenges of diffusion measurements of laser polarized 3He and 129Xe gas. Laser polarization enhances the NMR sensitivity of these noble gases by >10(3), but creates an unstable, nonthermal polarization that is not readily renewable. A new method is presented which permits parallel acquisition of the several measurements required to determine a diffusive attenuation curve. The NMR characterization of a sample's diffusion behavior can be accomplished in a single measurement, using only a single polarization step. As a demonstration, the diffusion coefficient of a sample of laser-polarized 129Xe gas is measured via this method. Copyright 1999 Academic Press.
- Published
- 1999
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38. Die verwendung der autologen vena femoralis bei vena-cava-superior-thrombose: Fallbericht mit literaturübersicht
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Klima, U., Mair, R., Groß, C., Peschl, R, Wimmer-Greinecker, G., and Brücke, P.
- Published
- 1994
- Full Text
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39. Pulsed-field-gradient measurements of time-dependent gas diffusion
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Mair, R. W, Cory, D. G, Peled, S, Tseng, C. H, Patz, S, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
Pulsed-field-gradient NMR techniques are demonstrated for measurements of time-dependent gas diffusion. The standard PGSE technique and variants, applied to a free gas mixture of thermally polarized xenon and O2, are found to provide a reproducible measure of the xenon diffusion coefficient (5.71 x 10(-6) m2 s-1 for 1 atm of pure xenon), in excellent agreement with previous, non-NMR measurements. The utility of pulsed-field-gradient NMR techniques is demonstrated by the first measurement of time-dependent (i.e., restricted) gas diffusion inside a porous medium (a random pack of glass beads), with results that agree well with theory. Two modified NMR pulse sequences derived from the PGSE technique (named the Pulsed Gradient Echo, or PGE, and the Pulsed Gradient Multiple Spin Echo, or PGMSE) are also applied to measurements of time dependent diffusion of laser polarized xenon gas, with results in good agreement with previous measurements on thermally polarized gas. The PGMSE technique is found to be superior to the PGE method, and to standard PGSE techniques and variants, for efficiently measuring laser polarized noble gas diffusion over a wide range of diffusion times. Copyright 1998 Academic Press.
- Published
- 1998
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40. Low-field MRI of laser polarized noble gas
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Tseng, C. H, Wong, G. P, Pomeroy, V. R, Mair, R. W, Hinton, D. P, Hoffmann, D, Stoner, R. E, Hersman, F. W, Cory, D. G, and Walsworth, R. L
- Subjects
Life Sciences (General) - Abstract
NMR images of laser polarized 3He gas were obtained at 21 G using a simple, homebuilt instrument. At such low fields magnetic resonance imaging (MRI) of thermally polarized samples (e.g., water) is not practical. Low-field noble gas MRI has novel scientific, engineering, and medical applications. Examples include portable systems for diagnosis of lung disease, as well as imaging of voids in porous media and within metallic systems.
- Published
- 1998
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41. Influence of building characteristics on tunnelling-induced ground movements
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Ritter, S, Giardina, De Jong, MJ, Mair, R, Ritter, Stefan [0000-0002-1465-6081], De Jong, Matthew [0000-0002-6195-839X], and Apollo - University of Cambridge Repository
- Subjects
centrifuge modelling soil ,structure interaction tunnels & tunnelling - Abstract
The interaction mechanisms between surface structures and tunnelling-induced ground movements were investigated through centrifuge testing. Although numerous studies have considered this soil–structure interaction problem, previous experiments have neglected important building characteristics and field data inherently contain numerous uncertainties related to the soil, the structure and the tunnelling procedure. Consequently, the interpretation of results and validation of computational models can be problematic. In this study, tunnelling beneath three-dimensional printed structural models with varying building characteristics (i.e. position, length and facade openings) was simulated in a centrifuge. The experimental results demonstrate that tunnelling induces soil displacements at the surface and subsurface that are notably altered due to nearby structures. Specifically, different amounts of vertical and horizontal ground movements, soil dilation and widening of settlement troughs were observed. Building distortions and horizontal building strains were also affected by the relative position of the building to the tunnel, the building length and the area of facade openings. The experimental results provide important data for the evaluation of current design methods and verification of computational models., The authors thank the Engineering and Physical Sciences Research Council (grant EP/KP018221/1) and Crossrail for financially supporting this research.
- Published
- 2018
- Full Text
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42. Immediate effects and outcome of in-utero pulmonary valvuloplasty in fetuses with pulmonary atresia with intact ventricular septum or critical pulmonary stenosis
- Author
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Tulzer, A., primary, Arzt, W., additional, Gitter, R., additional, Prandstetter, C., additional, Grohmann, E., additional, Mair, R., additional, and Tulzer, G., additional
- Published
- 2018
- Full Text
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43. The value of cell-free DNA for molecular pathology
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Stewart, CM, Kothari, PD, Mouliere, F, Mair, R, Somnay, S, Benayed, R, Zehir, A, Weigelt, B, Dawson, S-J, Arcila, ME, Berger, MF, Tsui, DWY, Stewart, CM, Kothari, PD, Mouliere, F, Mair, R, Somnay, S, Benayed, R, Zehir, A, Weigelt, B, Dawson, S-J, Arcila, ME, Berger, MF, and Tsui, DWY
- Published
- 2018
44. Reports Of Societies
- Author
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Paget, James, Broadbent, W. H., Mair, R. S., Keetley, C. B., Lucas, R. Clement, Dreschfeld, J., Bidie, G., Stocks, A. W., and Atkinson, E.
- Published
- 1888
45. De gepeste werknemer verdient beter : een rechtsvergelijkend onderzoek naar een effectieve bestrijding van ongewenste omgangsvormen op de werkvloer
- Author
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Mair, R. le, Mair, R. le, Mair, R. le, and Mair, R. le
- Published
- 2004
46. Pile-soil interaction and settlement effects induced by deep excavations
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Korff, M. (author), Mair, R (author), van Tol, A.F. (author), Korff, M. (author), Mair, R (author), and van Tol, A.F. (author)
- Abstract
Geo-engineering
- Published
- 2016
- Full Text
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47. Ontogeny of the olfactory code
- Author
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Mair, R. G.
- Published
- 1986
- Full Text
- View/download PDF
48. Mutation in KRAS prognosticates early recurrence in patients undergoing pulmonary metastasectomy from primary colorectal carcinoma
- Author
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Schweiger, T, Hegedüs, B, Nikolowsky, C, Hegedüs, Z, Birner, P, Döme, B, Mair, R, Lang, G, Klepetko, W, Ankersmit, HJ, and Hoetzenecker, K
- Subjects
ddc: 610 ,610 Medical sciences ,Medicine ,neoplasms ,digestive system diseases - Abstract
Objective: Pulmonary metastasectomy is an integral part of the interdisciplinary treatment of patients with primary colorectal carcinoma (CRC) and pulmonary metastases (PM). KRAS mutations are evident in about one third of primary CRC tissue samples, however, the prognostic value of these mutations [for full text, please go to the a.m. URL], Gemeinsame Jahrestagung der Deutschen, Österreichischen und Schweizerischen Gesellschaft für Thoraxchirurgie
- Published
- 2013
- Full Text
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49. Spread of yield with mild steel: Tests on mild-steel plates indicate that, by variation of heat-treatment procedures, either Dugdale-type or diffuse-type yielding can be obtained
- Author
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Mair, R. I. and Banks, E. E.
- Published
- 1973
- Full Text
- View/download PDF
50. Shale gas extraction in the UK: a review of hydraulic fracturing
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Mair, R., Bickle, M., Goodman, D., Koppelman, B., Roberts, J., Selley, R., Shipton, Z., Thomas, H., Walker, A., Woods, E., and Younger, P.
- Published
- 2012
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