1,860 results on '"Karban, A"'
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2. Floristic changes following the chestnut blight may be delayed for decades.
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Karban, Richard and Karban, Claire
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Plant Diseases ,Trees ,Fagaceae ,Virginia ,Quercus - Abstract
A survey conducted in the 1920s, prior to the chestnut blight, indicated that chestnuts and oaks were codominant canopy species in White Oak Canyon, Shenandoah National Park, Virginia. A second survey in 1977 suggested that chestnuts were being replaced by tree species present before the blight, particularly oaks. In 2021, we resurveyed the 10 sites included in our 1977 survey and also recorded canopy and understory trees that grew above remnant chestnut sprouts. The canopy changed more substantially during the second interval (since 1977). Birch and maples were now more abundant. Hemlock declined, and oaks were less common in the canopy. In general, the trees considered as early to mid-successional have replaced oaks and hemlock. Chestnut sprouts have become much less common since 1977, presumably as repeated cycles of diebacks have weakened rootstocks. Those sites where chestnut sprouts have persisted until 2021 differed from neighboring sites without them. Chestnut sprouts were rare in sites with birch and hemlock; chestnut has persisted in locations with red oaks in the canopy and with few other understory competitors. This survey has been conducted over a longer time interval than previous studies that asked similar questions and our results suggest that changes to the forest composition following the loss of the American chestnut may be greater than previously recognized although the relative contribution of losing this codominant species is unclear.
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- 2024
3. Evolution of sensitivity to warning cues from kin in plants with a structured population.
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Yamauchi, Atsushi, Takabayashi, Junji, Shiojiri, Kaori, and Karban, Richard
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HIPVs ,induced anti‐herbivore resistance ,kin competition ,kin recognition - Abstract
Plants exchange a variety of information intra- and interspecifically by using various mediating cues. For example, plant individuals that are injured by herbivores release volatile chemicals, which induce receiver plants to express anti-herbivore resistance. Remarkably, some plant species were known to represent kin specificity in the response, where cues from a damaged individual induce a higher level of resistance in a kin receiver than in a non-kin receiver. Such higher sensitivity to warning cues from kin could be advantageous via two mechanisms. If each herbivore tends to attack plants with a certain genotype, plants should be more sensitive to warning cues from kin that share genetic properties. In addition, if herbivores successively attack the neighboring plant with a high probability, and if related plants tend to grow in close proximity, plants may be more sensitive to warning cues from neighboring kin under the presence of a trade-off between sensitivity to kin and non-kin. In the present study, we constructed a mathematical model including those mechanisms to investigate the evolutionary process of the higher sensitivity to warning cues from kin than sensitivities to cues from non-kin. According to the analysis of evolutionary dynamics, we revealed that both mechanisms could contribute, although higher sensitivity to cues from kin is more likely to evolve when the spatial range of competition is greater than the range of effective alarm cues. This result highlights the importance of the competition regime in the evolution of signaling among kin.
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- 2024
4. Acoustic resolvent analysis of turbulent jets
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Bugeat, B., Karban, U., Agarwal, A., Lesshafft, L., and Jordan, P.
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Physics - Fluid Dynamics - Abstract
We perform a resolvent analysis of a compressible turbulent jet, where the optimisation domain of the response modes is located in the acoustic field, excluding the hydrodynamic region, in order to promote acoustically efficient modes. We examine the properties of the acoustic resolvent and assess its potential for jet-noise modelling, focusing on the subsonic regime. Resolvent forcing modes, consistent with previous studies, are found to contain supersonic waves associated with Mach wave radiation in the response modes. This differs from the standard resolvent in which hydrodynamic instabilities dominate. We compare resolvent modes with SPOD modes educed from LES data. Acoustic resolvent response modes generally have better alignment with acoustic SPOD modes than standard resolvent response modes. For the optimal mode, the angle of the acoustic beam is close to that found in SPOD modes for moderate frequencies. However, there is no significant separation between the singular values of the leading and sub-optimal modes. Some suboptimal modes are furthermore shown to contain irrelevant structure for jet noise. Thus, even though it contains essential acoustic features absent from the standard resolvent approach, the SVD of the acoustic resolvent alone is insufficient to educe a low-rank model for jet noise. But because it identifies the prevailing mechanisms of jet noise, it provides valuable guidelines in the search of a forcing model (Karban \textit{et al.} An empirical model of noise sources in subsonic jets. \textit{Journal of Fluid Mechanics} (2023): A18)., Comment: Accepted for publication in TCFD
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- 2023
5. Modeling closed-loop control of installation noise using Ginzburg-Landau equation
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Karban, Ugur, Martini, Eduardo, and Jordan, Peter
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Physics - Fluid Dynamics - Abstract
Installation noise is a dominant source associated with aircraft jet engines. Recent studies show that linear wavepacket models can be employed for prediction of installation noise, which suggests that linear control strategies can also be adopted for mitigation of it. We present here a simple model to test different control approaches and highlight the potential restrictions on a successful noise control in an actual jet. The model contains all the essential elements for a realistic representation of the actual control problem: a stochastic wavepacket is obtained via a linear Ginzburg-Landau model; the effect of the wing trailing edge is accounted for by introducing a semi-infinite half plane near the wavepacket; and the actuation is achieved by placing a dipolar point source at the trailing edge, which models a piezoelectric actuator. An optimal causal resolvent-based control method is compared against the classical wave-cancellation method. The effect of the causality constraint on the control performance is tested by placing the sensor at different positions. We demonstrate that when the sensor is not positioned sufficiently upstream of the trailing edge, which can be the case for the actual control problem due to geometric restrictions, causality reduces the control performance. We also show that this limitation can be moderated using the optimal causal control together with modelling of the forcing., Comment: 30 pages, 15 figures
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- 2023
6. Modal decomposition of nonlinear interactions in wall turbulence
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Karban, Ugur, Martini, Eduardo, Cavalieri, André V. G., and Jordan, Peter
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Physics - Fluid Dynamics - Abstract
Coherent structures are found in many different turbulent flows and are known to drive self-sustaining processes in wall turbulence. Identifying the triadic interactions which generate coherent structures can provide insights beyond what is possible with linearized models. There are infinite possible interactions that may generate a given structure. Thus, a method to systematically study those, ranking them in terms of their contribution to the structure of interest, is essential. We here use the resolvent-based extended spectral proper orthogonal decomposition (RESPOD) approach (Karban, U. et al. 2022 Self-similar mechanisms in wall turbulence studied using resolvent analysis. Journal of Fluid Mechanics 969, A36) to rank the triadic interactions which give rise to the dominant coherent structures in minimal Couette flows at Reynolds number 400 and 1000. Our analysis identifies that six triadic interactions dominate the most energetic coherent structure, revealing the capability of the methodology to identify and rank nonlinear interactions. The approach can be used to analyse the energy exchange in turbulent flows and may guide the construction of reduced-order models based on the interplay between different flow modes. Based on this framework, we introduce a modelling strategy where the interactions increasing or reducing the energy of a given mode are grouped as sources and sinks, respectively. The effect of the sinks is embedded in the resolvent operator by using an eddy viscosity model. The sources are used for driving this modified resolvent operator and are shown to yield accurate flow predictions at zero frequency. We discuss that this strategy can be useful when analysing nonlinear interactions or modelling forcing at high-Reynolds-number flows., Comment: 25 pages, 20 figures
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- 2023
7. An empirical model of noise sources in subsonic jets
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Karban, Ugur, Bugeat, Benjamin, Towne, Aaron, Lesshafft, Lutz, Agarwal, Anurag, and Jordan, Peter
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Physics - Fluid Dynamics - Abstract
Modelling the noise emitted by turbulent jets is made difficult by their acoustic inefficiency: only a tiny fraction of the near-field turbulent kinetic energy is propagated to the far field as acoustic waves. As a result, jet-noise models must accurately capture this small, acoustically efficient component hidden among comparatively inefficient fluctuations. In this paper, we identify this acoustically efficient near-field source from large-eddy-simulation data and use it to inform a predictive model. Our approach uses the resolvent framework, in which the source takes the form of nonlinear fluctuation terms that act as a forcing on the linearized Navier-Stokes equations. First, we identify the forcing that, when acted on by the resolvent operator, produces the leading spectral proper orthogonal decomposition modes in the acoustic field for a Mach 0.4 jet. Second, the radiating components of this forcing are isolated by retaining only portions with a supersonic phase speed. This component makes up less than 0.05% of the total forcing energy but generates most of the acoustic response, especially at peak (downstream) radiation angles. Finally, we propose an empirical model for the identified acoustically efficient forcing components. The model is tested at other Mach numbers and flight-stream conditions and predicts noise within 2 dB accuracy for a range of frequencies, downstream angles, and flight conditions., Comment: 33 pages, 22 figures
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- 2022
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8. Vehicle pollution is associated with elevated insect damage to street trees
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Meineke, Emily K, Eng, David S, and Karban, Richard
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global change ,herbivore ,herbivory ,plant-insect interactions ,pollution ,Quercus ,urban ecology ,urban forest ,Ecological Applications ,Environmental Science and Management ,Ecology - Abstract
Vehicle pollution is a pervasive aspect of anthropogenic change across rural and urban habitats. The most common emissions are carbon- or nitrogen-based pollutants that may impact diverse interactions between plants and insect herbivores. However, the effects of vehicle pollution on plant-insect interactions are poorly understood. Here, we combine a city-wide experiment across the Sacramento Metropolitan Area and a laboratory experiment to determine how vehicle emissions affect insect herbivory and leaf nutritional quality. We demonstrate that leaf damage to a native oak species (Quercus lobata) commonly planted across the western US is substantially elevated on trees exposed to vehicle emissions. In the laboratory, caterpillars preferred leaves from highway-adjacent trees and performed better on leaves from those same trees. Synthesis and applications. Together, our studies demonstrate that the heterogeneity in vehicle emissions across cities may explain highly variable patterns of insect herbivory on street trees. Our results also indicate that trees next to highways are particularly vulnerable to multiple stressors, including insect damage. To combat these effects, urban foresters may consider planting trees that are less susceptible to insect herbivory along heavily travelled roadways.
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- 2023
9. To the ring-shaped nucleolus seen by microscopy using human lymphocytes of blood donors and chronic lymphocytic leukemia patients
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Karel Smetana, Dana Mikulenková, Josef Karban, and Marek Trněný
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Ring-shaped nucleolus ,human lymphocytes ,Biology (General) ,QH301-705.5 - Abstract
The present study was undertaken to provide more information on the peripheral RNA containing ring of ringshaped nucleoli (RSNo). Human lymphocytes of blood donors and patients suffering from B chronic lymphocytic leukemia mostly characterized by RSNo represented very convenient cell models for such study. According to the light microscopy the peripheral RNA ring possessed several highly condensed foci. Such regions represented accumulated dense RNA fibrillar components (DFCs) seen by the electron microscopy. In contrary, the incidence of dense granular RNA-containing components (GCs) in surrounding portions of the RNA ring was small. Thus, the structural and morphological organization of the peripheral RNA ring of RSNo apparently reflects sites of micro-segregated foci of DFCs and a small incidence of GCs. That structural organization of the peripheral RNA ring of RSNo appeared to be a prerequisite for further regressive nucleolar changes resulting in the development of micronucleoli in terminal lymphocytes.
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- 2024
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10. Features of lactation and quality of milk of different breeds of goats
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Y. Karban
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goats, alpine, zaanen, anglo-nubian breeds, lactation, milk ,Veterinary medicine ,SF600-1100 - Abstract
Milk productivity during the lactation period (305 days) and evaluation of milk according to different quality indicators in periods of the year were studied. The experiments were carried out on 3 groups of goats of Zaanen, Alpine, and Anglo-Nubian breeds at 3–4 years old. Milk productivity was evaluated from the 1st to the 11th month of lactation, and milk quality indicators (fat, protein, SOMO, density) were analyzed using the Lactan 1-4 milk analyzer. It was established that the most incredible intensity of lactation in goats occurs during the 4–5th month after farrowing; the exceptional dynamics of the lactation curve is that it increases from the 1st to the 4th month and decreases from the 5th to the 10th. An interbreeding difference in milk yield was established (Р < 0.001, Р < 0.05) in the 4th, 5th, and 7th months of lactation, where the Anglo-Nubian, Alpine, and Zaanen breeds were arranged in the order of decreasing milk yield. The total lactation rate was maximum in Zaanen animals, and in Anglo-Nubian and Alpine goats, it was lower by 16.4 % (Р < 0.001) and 5 % (Р < 0.001), respectively. It was found that the average daily fertility of goats was in Zaanen animals, and the minimum and maximum in Anglo-Nubian and Alpine breeds about the season of the year, correspondingly spring – 15.9 %, 6.5 %; summer – 16.04 %, 3.74 %; autumn – 23.2 %, 8 %. The study of the physicochemical parameters of goat milk of various species revealed that, according to qualitative parameters, in the spring, summer, and autumn periods, there is an interspecies difference in the content of protein and fat, with the highest content in Anglo-Nubian animals, respectively by 5% (Р < 0.001), 38.6 % (P < 0.01), 36.1 % (P < 0.01). According to indicators of consistency and smell of milk, the three breeds of goats did not have a probable difference. The following discrepancies were established regarding taste qualities: a sweet taste in Anglo-Nubian animals, a rich one in Alpine animals, and no extraneous aftertaste in Zaanen animals. A light cream color is noted in the Anglo-Nubian circles, and a color variation from white to light cream is present in the Alpine and Zaanen peoples.
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- 2024
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11. Solutions to aliasing in time-resolved flow data
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Karban, Ugur, Martini, Eduardo, Jordan, Peter, Brès, Guillaume A., and Towne, Aaron
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Physics - Fluid Dynamics - Abstract
Avoiding aliasing in time-resolved flow data obtained through high fidelity simulations while keeping the computational and storage costs at acceptable levels is often a challenge. Well-established solutions such as increasing the sampling rate or low-pass filtering to reduce aliasing can be prohibitively expensive for large data sets. This paper provides a set of alternative strategies for identifying and mitigating aliasing that are applicable even to large data sets. We show how time-derivative data, which can be obtained directly from the governing equations, can be used to detect aliasing and to turn the ill-posed problem of removing aliasing from data into a well-posed problem, yielding a prediction of the true spectrum. Similarly, we show how spatial filtering can be used to remove aliasing for convective systems. We also propose strategies to prevent aliasing when generating a database, including a method tailored for computing nonlinear forcing terms that arise within the resolvent framework. These methods are demonstrated using a non-linear Ginzburg-Landau model and large-eddy simulation (LES) data for a subsonic turbulent jet., Comment: 31 pages, 18 figures
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- 2022
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12. Hilltopping influences spatial dynamics in a patchy population of tiger moths
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Pepi, Adam, Grof-Tisza, Patrick, Holyoak, Marcel, and Karban, Richard
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Animals ,Ecosystem ,Models ,Biological ,Moths ,Population Dynamics ,Wind ,connectivity ,metapopulation ,hilltopping ,dispersal ,tiger moth ,Bodega Marine Lab ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences - Abstract
Dispersal is a key driver of spatial population dynamics. Dispersal behaviour may be shaped by many factors, such as mate-finding, the spatial distribution of resources, or wind and currents, yet most models of spatial dynamics assume random dispersal. We examined the spatial dynamics of a day-flying moth species (Arctia virginalis) that forms mating aggregations on hilltops (hilltopping) based on long-term adult and larval population censuses. Using time-series models, we compared spatial population dynamics resulting from empirically founded hilltop-based connectivity indices and modelled the interactive effects of temperature, precipitation and density dependence. Model comparisons supported hilltop-based connectivity metrics including hilltop elevation over random connectivity, suggesting an effect of hilltopping behaviour on dynamics. We also found strong interactive effects of temperature and precipitation on dynamics. Simulations based on fitted time-series models showed lower patch occupancy and regional synchrony, and higher colonization and extinction rates when hilltopping was included, with potential implications for the probability of persistence of the patch network. Overall, our results show the potential for dispersal behaviour to have important effects on spatial population dynamics and persistence, and we advocate the inclusion of such non-random dispersal in metapopulation models.
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- 2022
13. Consistent individual variation in plant communication: do plants have personalities?
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Karban, Richard, Grof-Tisza, Patrick, and Couchoux, Charline
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Animals ,Plants ,Artemisia ,Personality ,Volatile Organic Compounds ,Herbivory ,Alarm call ,Behavior ,Plant communication ,Repeatability ,Volatiles ,Ecology - Abstract
Animal biologists have recently focused on individual variation in behavioral traits and have found that individuals of many species have personalities. These are defined as consistent intraspecific differences in behaviors that are repeatable across different situations and stable over time. When animals sense danger, some individuals will alert neighbors with alarm calls and both calling and responding vary consistently among individuals. Plants, including sagebrush, emit volatile cues when they are attacked by herbivores and neighbors perceive these cues and reduce their own damage. We experimentally transferred volatiles between pairs of sagebrush plants to evaluate whether individuals showed consistent variation in their effectiveness as emitters and as receivers of cues, measured in terms of reduced herbivore damage. We found that 64% of the variance in chewing damage to branches over the growing season was attributable to the identity of the individual receiving the cues. This variation could have been caused by inherent differences in the plants as well as by differences in the environments where they grew and their histories. We found that 5% of the variance in chewing damage was attributable to the identity of the emitter that provided the cue. This fraction of variation was statistically significant and could not be attributed to the environmental conditions of the receiver. Effective receivers were also relatively effective emitters, indicating consistency across different situations. Pairs of receivers and emitters that were effective communicators in 2018 were again relatively effective in 2019, indicating consistency over time. These results suggest that plants have repeatable individual personalities with respect to alarm calls.
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- 2022
14. Reconfigurable Antenna Array Testbed for Quantized Controlling
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Michal Pokorny, Ivo Vertat, David Panek, Pavel Hazdra, Milan Svanda, Jan Kracek, Milos Mazanek, Jiri Masopust, and Pavel Karban
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Antenna array ,quantization ,mutual coupling ,Electrical engineering. Electronics. Nuclear engineering ,TK1-9971 - Abstract
Contemporary beam-forming antenna arrays often use a large number of individual elements, sometimes hundreds or more, to achieve high gain for advanced applications like radar, space communication, and next-gen cellular networks. These arrays are complex and costly due to the need for precise amplitude and phase adjustments across the elements. The feeding network complexity leads to signal losses, reduced efficiency, and higher noise. Current research aims to simplify arrays, reduce active elements needing frontends, and streamline the feeding network, considering non-uniform, sparse, parasitic, or reflective arrays. Challenges arise from element coupling and imperfect models of high-frequency materials and electronic components. Therefore, in addition to simulations, practical experimentation remains vital. This paper focuses on designing a novel $3 \times 3$ element antenna array with digital quantized control. We explore the impact of quantized control on beamforming and plan to validate simplified orthogonal optimization methods with limited quantization depth. The proposed antenna array is applicable to 2400 MHz band research, including arrays with parasitic elements and switchable polarization for individual elements.
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- 2024
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15. Differences between repeated lipid profile measurements in a tertiary hospital over a short time period
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Or Porat, Marriele Kaplan, Smadar Atlibenkin, Dalia Hasson-Gilad, Amir Karban, and Ronen Zalts
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Low-density lipoprotein cholesterol ,LDL-C calculation ,Lipid profile ,Fasting ,Repeated tests ,Nutritional diseases. Deficiency diseases ,RC620-627 - Abstract
Abstract Background Measurement of the plasma lipid profile, mainly low-density lipoprotein cholesterol (LDL-C), is widely used in the management of hospitalized patients as part of their cardiometabolic risk assessment. In common practice, LDL-C is calculated indirectly by the Friedewald equation. For many years, fasting of 8–14 h is needed to obtain an accurate lipid profile measurement, although recent guidelines do not necessitate it. The aim of this study was to find patients with two consecutive LDL-C measurements taken over a short time period on the same admission to see if a significant difference exists and to suggest reasons that may explain it. We also aim to define whether the difference between LDL-C calculated by the Friedewald equation is diminished while using the newer Martin/Hopkins, de Cordova or Sampson/NIH equations. Methods This was a retrospective cohort study performed in one medical center in Israel. In a five-year time period, 772 patients with two repeated LDL-C measurements taken on the same admission were found. The median time gap between tests was 2 days. Correlations between laboratory results and LDL-C measurements were determined. Results A total of 414 patients (53.6%) had a difference greater than the acceptable total error of 8.9% in LDL-C calculation using the Friedewald equation, with a mean 25.8% difference between the two tests. Newer LDL-C calculations showed less diversity. Non-HDL-C was found as the only variable with a major correlation with LDL-C results in all equations. A weaker correlation was found with HDL-C. Triglycerides showed an even weaker correlation, and glucose differences had no correlation with LDL-C differences. Conclusions Repeated LDL-C measurements can vary widely, even during a short period of hospitalization. In this study, more than half of the patients had a significant difference between their consecutive LDL-C results. This wide difference between two consecutive tests was diminished using newer calculations, yet not well explained. The fasting state likely has no effect on LDL-C levels. The results of this study might emphasize that many factors influence LDL-C calculation, especially in the disease state. Further research is needed, especially in looking for a more accurate LDL-C calculation from existing formulas.
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- 2024
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16. Hospital Care Efficiency – Measuring Lipid Profile During Hospitalization
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Atlibenkin S, Dwolatzky T, Porat O, Karban A, and Zalts R
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lipid profile measurement ,hospitalization ,efficiency ,discharge recommendations ,Medicine (General) ,R5-920 - Abstract
Smadar Atlibenkin,1 Tzvi Dwolatzky,1,2 Or Porat,1 Amir Karban,1,3,* Ronen Zalts1,3,* 1Rappaport Faculty of Medicine, Technion – Israel Institute of Technology, Haifa, 3109601, Israel; 2Geriatrics Unit, Rambam Health Care Campus, Haifa, Israel; 3Department of Internal Medicine C, Rambam Health Care Campus, Haifa, Israel*These authors contributed equally to this workCorrespondence: Ronen Zalts, Department of Internal Medicine C, Rambam Health Care Campus, Ha’Aliyah Street 8, Box 9602, Haifa, 3109601, Israel, Tel +972 4 7772321, Fax +972 4 7772260, Email r_zalts@rambam.health.gov.ilBackground: Lipid profile measurement in order to identify patients with elevated low-density lipoprotein cholesterol (LDL-C) is clearly recommended for all age groups. However, the value of screening patients for elevated LDL-C during hospitalization has not been determined. The aim of this study was to investigate the value of lipid screening tests in patients admitted to internal medicine wards, and as part of our efforts to promote a more intelligent and efficient use of laboratory and imaging tests during hospital care.Methods: We conducted this retrospective, observational study, in which medical charts of patients for whom at least one lipid profile measurement was performed during hospitalization were reviewed. The patients were categorized into 5 groups according to admission diagnosis, and for each patient, we looked if the lipid profile was mentioned or referred to, based on guidelines, in the discharge summary.Results: Lipid profile taken during hospitalization was referred to in the discharge letter in only 38.7% of patients, and even in the case of a need to consider according to guidelines, only a 45.7% consideration rate was found.Conclusion: This study highlights the need for a more efficient and focused approach to the use of lipid profile measurement during hospitalization.Keywords: lipid profile measurement, hospitalization, efficiency, discharge recommendations
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- 2023
17. Synthesis and unexpected binding of monofluorinated N,Nʹ-diacetylchitobiose and LacdiNAc to wheat germ agglutinin
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Kurfiřt, Martin, Hamala, Vojtěch, Beránek, Jan, Červenková Šťastná, Lucie, Červený, Jakub, Dračínský, Martin, Bernášková, Jana, Spiwok, Vojtěch, Bosáková, Zuzana, Bojarová, Pavla, and Karban, Jindřich
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- 2024
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18. Exploring long-range fluorine–carbon J-coupling for conformational analysis of deoxyfluorinated disaccharides: A combined computational and NMR study
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Chaloupecká, Ema, Kurfiřt, Martin, Červenková Šťastná, Lucie, Karban, Jindřich, and Dračínský, Martin
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- 2024
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19. Self-similar mechanisms in wall turbulence studied using of resolvent analysis
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Karban, U., Martini, E., Cavalieri, A. V. G., Lesshafft, L., and Jordan, P.
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Physics - Fluid Dynamics - Abstract
Self-similarity of wall-attached coherent structures in a turbulent channel at $Re_\tau=543$ is explored by means of resolvent analysis. In this modelling framework, coherent structures are understood to arise as a response of the linearised mean-flow operator to generalised, frequency-dependent Reynolds stresses, considered to act as an endogenous forcing. We assess the self-similarity of both the wall-attached flow structures and the associated forcing. The former are educed from direct numerical simulation data by finding the flow field correlated with the wall shear, whereas the latter is identified using a frequency space version of Extended Proper Orthogonal Decomposition (Bor\'{e}e, J. 2003 Extended proper orthogonal decomposition: a tool to analyse correlated events in turbulent flows. Experiments in fluids 35 (2), 188-192). The forcing structures identified are compared to those obtained using the resolvent-based estimation introduced by Towne \emph{et al}. (Towne, A., Lozano-Dur\'{a}n, A. & Yang, X. 2020 Resolvent-based estimation of space-time flow statistics. Journal of Fluid Mechanics 883, A17). The analysis reveals self-similarity of both wall-attached structures$-$in quantitative agreement with Townsend's hypothesis of self-similar attached eddies$-$and the underlying forcing, at least in certain components., Comment: 30 pages, 18 figures
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- 2021
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20. Why cicadas (Hemiptera: Cicadidae) develop so slowly
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Karban, Richard
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Good Health and Well Being ,body size ,Cercopidae ,generation time ,growth rate ,life history ,longevity ,spittlebugs ,survival ,xylem feeding ,Biological Sciences ,Evolutionary Biology - Abstract
Cicadas have amongst the longest development times and are also amongst the largest insects. Cicadas feed exclusively on xylem fluid, which is nutritionally dilute and difficult to obtain. One possible explanation for their slow development is that poor nutrition limits their growth rate. An analysis of 30 cicada species with known development times is consistent with this hypothesis as species with more equatorial distributions grew more rapidly than those at higher latitudes. A second possible explanation is that prolonged development maximizes net reproductive rate because there is little risk of mortality once early instar cicada nymphs establish feeding sites. Extended development probably allows nymphs to store resources and produce more offspring. Spittlebugs also feed obligately on xylem fluid and grow at similarly slow rates although they attain small adult sizes. Unlike cicadas, spittlebugs do not have steep survivorship curves and have shorter development times. The life histories of cicadas and spittlebugs are therefore consistent with both hypotheses. Cicada development times may be limited if (1) the risk of nymphal mortality equals increased fecundity associated with prolonging development, (2) fluctuating conditions sometimes favour rapid development times, or (3) host plant quality changes over time and penalizes nymphs that cannot relocate feeding sites.
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- 2022
21. Association of DGAT1 with goat milk and meat production traits
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O. Kravchenko and Y. Karban
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genes, milk, dgat1 gene, goat genetics, milk fat, milk protein ,Veterinary medicine ,SF600-1100 - Abstract
Genetic factors can influence the composition of milk fat and its genetic variation. The purpose of our work was to familiarize and study the structure, role, and influence of the DGAT1 (or diacylglycerol-O-acyltransferase 1) gene on goat milk production, its structure, and relationship with milk fat for further research in improving the goat selection system. The selection of goats, aimed at increasing the frequency of alleles with a positive effect on this trait, was initiated by geneticists. In general, identifying and evaluating genetic markers for milk performance traits are the initial and crucial steps for establishing a marker-assisted selection system (MAS). Thus, increasing productivity through genetic selection is a common goal for many animal breeding programs worldwide. The amount of milk, milk fat, and proteins are essential features of dairy farming. In cheese production, milk fatty acids perform a crucial technical function, as they are the main building blocks of milk fat, giving the cheese its unique taste and textural properties. Milk fatty acids are necessary for producing many dairy products, while intramuscular fat is associated with meat quality. Triacylglycerols (TAG) are the main components of intramuscular fat and milk fat. Therefore, understanding polymorphisms and genes related to fat synthesis is essential for animal husbandry. The identification of quantitative trait loci (QTL) and genes associated with milk production traits has been supported by various studies over the past decade. It was established that QTL genes on chromosomes 14, 15, and 9 are related to the properties of milk and meat production in goats. The presence of the diacylglycerol-O-acyltransferase 1 (DGAT1) gene in goat chromosomes 14, 15, and 9 has been reported. Having a key role in fat metabolism and TAG synthesis, DGAT1 genes have attracted considerable attention, especially in animal milk production. Several polymorphisms have been documented in DGAT1 in different animal species, including many cattle and small cattle, for their association with milk production traits. The critical role of the DGAT1 gene in milk fat metabolism makes it an exciting candidate for genetic variation in milk characteristics in dairy goats.
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- 2023
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22. Evolution of sensitivity to warning cues from kin in plants with a structured population
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Atsushi Yamauchi, Junji Takabayashi, Kaori Shiojiri, and Richard Karban
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HIPVs ,induced anti‐herbivore resistance ,kin competition ,kin recognition ,Ecology ,QH540-549.5 - Abstract
Abstract Plants exchange a variety of information intra‐ and interspecifically by using various mediating cues. For example, plant individuals that are injured by herbivores release volatile chemicals, which induce receiver plants to express anti‐herbivore resistance. Remarkably, some plant species were known to represent kin specificity in the response, where cues from a damaged individual induce a higher level of resistance in a kin receiver than in a non‐kin receiver. Such higher sensitivity to warning cues from kin could be advantageous via two mechanisms. If each herbivore tends to attack plants with a certain genotype, plants should be more sensitive to warning cues from kin that share genetic properties. In addition, if herbivores successively attack the neighboring plant with a high probability, and if related plants tend to grow in close proximity, plants may be more sensitive to warning cues from neighboring kin under the presence of a trade‐off between sensitivity to kin and non‐kin. In the present study, we constructed a mathematical model including those mechanisms to investigate the evolutionary process of the higher sensitivity to warning cues from kin than sensitivities to cues from non‐kin. According to the analysis of evolutionary dynamics, we revealed that both mechanisms could contribute, although higher sensitivity to cues from kin is more likely to evolve when the spatial range of competition is greater than the range of effective alarm cues. This result highlights the importance of the competition regime in the evolution of signaling among kin.
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- 2024
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23. Semi-Analytical Solution for a Multi-Objective TEAM Benchmark Problem
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Karban, Pavel, Pánek, David, Orosz, Tamás, and Doležel, Ivo
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Mathematics - Numerical Analysis ,G.1.10 - Abstract
Benchmarking is essential for testing new numerical analysis codes. Their solution is crucial both for testing the partial differential equation solvers and both for the optimization methods. Especially, nature-inspired optimization algorithm-based solvers, where is an important study is to use benchmark functions to test how the new algorithm may perform, in comparison with other algorithms or fine-tune the optimizer parameters. This paper proposes a novel semi-analytical solution of the multi-objective T.E.A.M benchmark problem. The goal of the benchmark problem is to optimize the layout of a coil and provide a uniform magnetic field in the given region. The proposed methodology was realized in the open-source robust design optimization framework \=Artap, and the precision of the solution is compared with the result of a fully hp-adaptive numerical solver: Agros-suite. The coil layout optimization was performed by derivative-free non-linear methods and the NSGA-II algorithm., Comment: 15 pages, 7 figures
- Published
- 2020
24. Ambiguity in mean-flow-based linear analysis
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Karban, U., Bugeat, B., Martini, E., Towne, A., Cavalieri, A. V. G., Lesshafft, L., Agarwal, A., Jordan, P., and Colonius, T.
- Subjects
Physics - Fluid Dynamics - Abstract
Linearisation of the Navier-Stokes equations about the mean of a turbulent flow forms the foundation of popular models for energy amplification and coherent structures, including resolvent analysis. While the Navier-Stokes equations can be equivalently written using many different sets of dependent variables, we show that the properties of the linear operator obtained via linearisation about the mean depend on the variables in which the equations are written prior to linearisation. For example, we show that using primitive and conservative variables leads to differences in the singular values and modes of the resolvent operator for turbulent jets, and that the differences become more severe as variable-density effects increase. This lack of uniqueness of mean-flow-based linear analysis provides new opportunities for optimizing models by specific choice of variables while also highlighting the importance of carefully accounting for the nonlinear terms that act as a forcing on the resolvent operator., Comment: 11 pages, 3 figures, accepted manuscript
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- 2020
- Full Text
- View/download PDF
25. Risk of herbivory negatively correlates with the diversity of volatile emissions involved in plant communication
- Author
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Grof-Tisza, Patrick, Karban, Richard, Rasheed, Muhammad Usman, Saunier, Amélie, and Blande, James D
- Subjects
Animals ,Artemisia ,Herbivory ,Humans ,Insecta ,Plants ,Volatile Organic Compounds ,Artemisia tridentata ,chemotype ,eavesdropping ,induced resistance ,kin selection ,volatile signalling ,Biological Sciences ,Agricultural and Veterinary Sciences ,Medical and Health Sciences - Abstract
Plant-to-plant volatile-mediated communication and subsequent induced resistance to insect herbivores is common. Less clear is the adaptive significance of these interactions; what selective mechanisms favour plant communication and what conditions allow individuals to benefit by both emitting and responding to cues? We explored the predictions of two non-exclusive hypotheses to explain why plants might emit cues, the kin selection hypothesis (KSH) and the mutual benefit hypothesis (MBH). We examined 15 populations of sagebrush that experience a range of naturally occurring herbivory along a 300 km latitudinal transect. As predicted by the KSH, we found several uncommon chemotypes with some chemotypes occurring only within a single population. Consistent with the MBH, chemotypic diversity was negatively correlated with herbivore pressure; sites with higher levels of herbivory were associated with a few common cues broadly recognized by most individuals. These cues varied among different populations. Our results are similar to those reported for anti-predator signalling in vertebrates.
- Published
- 2021
26. Effects of experimental watering but not warming on herbivory vary across a gradient of precipitation
- Author
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Pepi, Adam and Karban, Richard
- Subjects
Biological Sciences ,Ecology ,Climate Action ,Bodega Marine Reserve ,climate gradient ,Humboldt Bay National Wildlife Refuge ,open-top chamber ,precipitation ,open‐top chamber ,Evolutionary Biology ,Evolutionary biology ,Ecological applications - Abstract
Climate change can affect biotic interactions, and the impacts of climate on biotic interactions may vary across climate gradients. Climate affects biotic interactions through multiple drivers, although few studies have investigated multiple climate drivers in experiments. We examined the effects of experimental watering, warming, and predator access on leaf water content and herbivory rates of woolly bear caterpillars (Arctia virginalis) on a native perennial plant, pacific silverweed (Argentina anserina ssp. pacifica), at two sites across a gradient of precipitation in coastal California. Based on theory, we predicted that watering should increase herbivory at the drier end of the gradient, predation should decrease herbivory, and watering and warming should have positive interacting effects on herbivory. Consistent with our predictions, we found that watering only increased herbivory under drier conditions. However, watering increased leaf water content at both wetter and drier sites. Warming increased herbivory irrespective of local climate and did not interact with watering. Predation did not affect herbivory rates. Given predictions that the study locales will become warmer and drier with climate change, our results suggest that the effects of future warming and drying on herbivory may counteract each other in drier regions of the range of Argentina anserina. Our findings suggest a useful role for range-limit theory and the stress-gradient hypothesis in predicting climate change effects on herbivory across stress gradients. Specifically, if climate change decreases stress, herbivory may increase, and vice versa for increasing stress. In addition, our work supports previous suggestions that multiple climate drivers are likely to have dampening effects on biotic interactions due to effects in different directions, though this is context-dependent.
- Published
- 2021
27. Critical success factor of PPP for affordable housing provision in Makkah, Saudi Arabia
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Alshahrani, Adnan, Alaboud, Naif, Ahmed, Yahaya, Karban, Abdullah, Majrashi, Abdurahman A., and Altowerqi, Zayed
- Published
- 2023
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28. Rating the significance of the factors influencing shortage of skilled labours for sustainable construction: a perception of Makkah construction practitioner
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Alshahrani, Adnan, Alaboud, Naif, Leje, Mohammed Isah, Karban, Abdullah, and Altowerqi, Zayed
- Published
- 2023
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- View/download PDF
29. Artap: Robust Design Optimization Framework for Engineering Applications
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Pánek, David, Orosz, Tamás, and Karban, Pavel
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Mathematics - Optimization and Control ,Electrical Engineering and Systems Science - Systems and Control ,G.4 - Abstract
The main goal of the Artap project is to provide an extensive infrastructure for robust design optimization, where usually many different numerical solvers have to be used together and the impact of the manufacturing uncertainties have to be minimized. Artap is an open-source software platform, developed jointly with the coupled numerical field solver, Agros Suite. Artap ensures interfaces for a broad collection of optimization algorithms (genetic and evolutionary algorithms, various interfaces to libraries such as Nlopt, Bayesopt, etc .), tools for machine learning (neural networks, Gaussian processes, etc. ), finite element solvers (Agros Suite, Comsol, Multiphysics, deal.II). The implemented tools offers an easy and straightforward solution not only for robust design optimization but parameter identification, model order reduction, and shape optimization, as well. Moreover, Artap provides automatic parallelization of the optimization process. The paper presents the structure of the framework and technologies powering the project. The main features of Artap are demonstrated on an induction brazing process design tasks., Comment: 6 pages, 10 figures, the paper presented in ICDS 2019 and accepted for publication in IEEE Xplore
- Published
- 2019
- Full Text
- View/download PDF
30. Feeding and damage-induced volatile cues make beetles disperse and produce a more even distribution of damage for sagebrush.
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Karban, Richard and Yang, Louie H
- Subjects
Trirhabda ,dispersion ,herbivore behaviour ,induced resistance ,movement ,over-dispersed ,plant communication ,spatial distribution ,Trirhabda ,herbivore behavior ,Ecology ,Environmental Sciences ,Biological Sciences ,Agricultural and Veterinary Sciences - Abstract
Induced plant responses to herbivory are common, and we have learned a lot about the mechanisms of induced resistance and their effects on herbivore performance. We know less about their effects on herbivore behaviour and especially on spatial patterns of damage. Theoretical models predict that induced responses can cause patterns of damage to become aggregated, random or even. A recent model predicted that informed herbivore movement coupled with communication between plants would make damage more even within individual plants. We tested these predictions in the field using a specialist beetle Trirhabda pilosa that feeds on sagebrush Artemisia tridentata. Both the beetle and the plant are well-documented to respond to damage-induced volatile cues. Beetle larvae were more likely to move from damaged leaves and leaves that had been exposed to volatiles from nearby damaged leaves compared to undamaged control leaves. Previous laboratory results indicated that beetles were more likely to choose undamaged leaves compared to damaged leaves or those exposed to volatile cues of damage. A comparison of damage patterns early in the season and after completion of beetle feeding revealed that variance in damage among branches decreased as the season progressed; that is, damage became more evenly distributed among the branches within a plant. Larvae damaged many leaves on a plant but removed relatively little tissue from each leaf. Herbivore movement and the spatial patterns of damage that it creates can be important in determining effects on plant fitness and other population processes. Dispersion of damage deserves more consideration in plant-herbivore studies.
- Published
- 2020
31. Assessing plant-to-plant communication and induced resistance in sagebrush using the sagebrush specialist Trirhabda pilosa
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Grof-Tisza, Patrick, Karban, Richard, Pan, Vincent S, and Blande, James D
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Artemisia tridentata ,Behavioral bioassay ,Plant-insect interactions ,Trirhabda pilosa ,Volatile-mediated communication ,Volatile organic compounds ,Ecology ,Plant Biology ,Zoology ,Entomology - Abstract
Plants respond to damage by herbivores or to reliable cues of damage by changing in ways that provide greater resistance and increase their fitness. Sagebrush has been a model system for understanding induced resistance, although resistance in this system is commonly assessed by quantifying damage at the end of the season; this measure is slow and lacks accuracy and interpretability because so many other factors also affect levels of damage. Herbivore choice offers a potentially rapid and accurate alternative assay of induced resistance. Here we evaluate whether feeding behavior of a specialized Chrysomelid beetle, Trirhabda pilosa, could be used to assay induced changes in plant quality. Beetle larvae were offered the choice between two leaves in Petri dish arenas. We found that beetles avoided leaves that were naturally damaged by herbivores, experimentally clipped with scissors, and exposed to the volatiles from naturally or experimentally damaged neighboring leaves compared to control leaves. Experiments varied the source of the damage, the duration of the feeding test, and how damage was measured, still, beetles consistently preferred uninduced controls by a 2:1 ratio over leaves exposed to cues of damage. These results suggest that behavioral assays using T. pilosa larvae can be used to rapidly evaluate induced resistance in this system. More generally, movement and feeding behaviors of herbivores are an important and underappreciated component of induced plant responses.
- Published
- 2020
32. Longitudinal Metabolome-Wide Signals Prior to the Appearance of a First Islet Autoantibody in Children Participating in the TEDDY Study
- Author
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Li, Qian, Parikh, Hemang, Butterworth, Martha D, Lernmark, Åke, Hagopian, William, Rewers, Marian, She, Jin-Xiong, Toppari, Jorma, Ziegler, Anette-G, Akolkar, Beena, Fiehn, Oliver, Fan, Sili, Krischer, Jeffrey P, Barbour, Aaron, Bautista, Kimberly, Baxter, Judith, Felipe-Morales, Daniel, Driscoll, Kimberly, Frohnert, Brigitte I, Stahl, Marisa, Gesualdo, Patricia, Hoffman, Michelle, Karban, Rachel, Liu, Edwin, Norris, Jill, Peacock, Stesha, Shorrosh, Hanan, Steck, Andrea, Stern, Megan, Villegas, Erica, Waugh, Kathleen, Simell, Olli G, Adamsson, Annika, Ahonen, Suvi, Åkerlund, Mari, Hakola, Leena, Hekkala, Anne, Holappa, Henna, Hyöty, Heikki, Ikonen, Anni, Ilonen, Jorma, Jäminki, Sinikka, Jokipuu, Sanna, Karlsson, Leena, Kero, Jukka, Kähönen, Miia, Knip, Mikael, Koivikko, Minna-Liisa, Koskinen, Merja, Koreasalo, Mirva, Kurppa, Kalle, Kytölä, Jarita, Latva-aho, Tiina, Lindfors, Katri, Lönnrot, Maria, Mäntymäki, Elina, Mattila, Markus, Miettinen, Maija, Multasuo, Katja, Mykkänen, Teija, Niininen, Tiina, Niinistö, Sari, Nyblom, Mia, Oikarinen, Sami, Ollikainen, Paula, Othmani, Zhian, Pohjola, Sirpa, Rajala, Petra, Rautanen, Jenna, Riikonen, Anne, Riski, Eija, Pekkola, Miia, Romo, Minna, Ruohonen, Satu, Simell, Satu, Sjöberg, Maija, Stenius, Aino, Tossavainen, Päivi, Vähä-Mäkilä, Mari, Vainionpää, Sini, Varjonen, Eeva, Veijola, Riitta, Viinikangas, Irene, Virtanen, Suvi M, Schatz, Desmond, Hopkins, Diane, Steed, Leigh, Bryant, Jennifer, Silvis, Katherine, Haller, Michael, Gardiner, Melissa, McIndoe, Richard, Sharma, Ashok, Anderson, Stephen W, Jacobsen, Laura, Marks, John, and Towe, PD
- Subjects
Pediatric ,Autoimmune Disease ,Diabetes ,Prevention ,Nutrition ,Metabolic and endocrine ,Alanine ,Amino Acids ,Branched-Chain ,Autoantibodies ,Child ,Preschool ,Dehydroascorbic Acid ,Diabetes Mellitus ,Type 1 ,Fatty Acids ,Female ,Genetic Predisposition to Disease ,Glutamate Decarboxylase ,Humans ,Infant ,Infant ,Newborn ,Insulin Antibodies ,Longitudinal Studies ,Male ,Metabolome ,Methionine ,Phosphatidylethanolamines ,Prodromal Symptoms ,Proline ,Risk ,Triglycerides ,gamma-Aminobutyric Acid ,TEDDY Study Group ,Medical and Health Sciences ,Endocrinology & Metabolism - Abstract
Children at increased genetic risk for type 1 diabetes (T1D) after environmental exposures may develop pancreatic islet autoantibodies (IA) at a very young age. Metabolic profile changes over time may imply responses to exposures and signal development of the first IA. Our present research in The Environmental Determinants of Diabetes in the Young (TEDDY) study aimed to identify metabolome-wide signals preceding the first IA against GAD (GADA-first) or against insulin (IAA-first). We profiled metabolomes by mass spectrometry from children's plasma at 3-month intervals after birth until appearance of the first IA. A trajectory analysis discovered each first IA preceded by reduced amino acid proline and branched-chain amino acids (BCAAs), respectively. With independent time point analysis following birth, we discovered dehydroascorbic acid (DHAA) contributing to the risk of each first IA, and γ-aminobutyric acid (GABAs) associated with the first autoantibody against insulin (IAA-first). Methionine and alanine, compounds produced in BCAA metabolism and fatty acids, also preceded IA at different time points. Unsaturated triglycerides and phosphatidylethanolamines decreased in abundance before appearance of either autoantibody. Our findings suggest that IAA-first and GADA-first are heralded by different patterns of DHAA, GABA, multiple amino acids, and fatty acids, which may be important to primary prevention of T1D.
- Published
- 2020
33. The ecology and evolution of induced responses to herbivory and how plants perceive risk
- Author
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Karban, Richard
- Subjects
Communication ,cues ,defence ,perception ,priming ,resistance ,Ecological Applications ,Ecology ,Zoology ,Entomology - Abstract
1. Plants perceive herbivore damage or increased risk and respond. These changes may increase plant fitness, although effects on fitness have often been assumed without supporting evidence. 2. Three models have been proposed to explain induced rather than constitutive defence. The optimal defence model posits that induction allow plants to reduce allocation costs; it predicts demonstrably lower costs when defences are not needed. The moving target model posits that induction increases spatial and temporal variability; it predicts that variability will be difficult for herbivores and will provide defence. The information transfer model posits that induced responses provide cues to other tissues on that individual plant and to other organisms in the community; it predicts that induced cues will provide systemic resistance, deter herbivores, and/or attract enemies of herbivores, thereby benefiting the induced plant. 3. All three models predict that cues must be reliable to be useful. In some cases, cues provide specific information about the damaged plant tissue and the herbivore and this specific information may allow plants to fine-tune responses. Recent theory posits that selection should favour plants that minimise recognition errors and reduce fitness costs associated with errors. 4. Future research should focus on exploring different modalities used by plants to perceive herbivore risk, the benefits and costs of perceiving cues and inducing resistance, and the basic natural history of these phenomena. Induced responses have great unrealised potential in agriculture, and research should focus on host plant resistance rather than attempting to involve other trophic levels.
- Published
- 2020
34. A lever action hypothesis for pendulous hummingbird flowers: experimental evidence from a columbine.
- Author
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LoPresti, EF, Goidell, J, Mola, JM, Page, ML, Specht, CD, Stuligross, C, Weber, MG, Williams, NM, and Karban, R
- Subjects
Animals ,Aquilegia ,Bees ,Birds ,Flowers ,Pollination ,Reproduction ,Ornithophily ,pollination syndrome ,floral movement ,floral morphology ,pendulous flower ,floral symmetry ,Aquilegia eximia ,Ranunculaceae ,columbine ,Aquilegia eximia ,Ecology ,Plant Biology ,Forestry Sciences ,Plant Biology & Botany - Abstract
Background and aimsPendulous flowers (due to a flexible pedicel) are a common, convergent trait of hummingbird-pollinated flowers. However, the role of flexible pedicels remains uncertain despite several functional hypotheses. Here we present and test the 'lever action hypothesis': flexible pedicels allow pendulous flowers to move upwards from all sides, pushing the stigma and anthers against the underside of the feeding hummingbird regardless of which nectary is being visited.MethodsTo test whether this lever action increased pollination success, we wired emasculated flowers of serpentine columbine, Aquilegia eximia, to prevent levering and compared pollination success of immobilized flowers with emasculated unwired and wire controls.Key resultsSeed set was significantly lower in wire-immobilized flowers than unwired control and wire control flowers. Video analysis of visits to wire-immobilized and unwired flowers demonstrated that birds contacted the stigmas and anthers of immobilized flowers less often than those of flowers with flexible pedicels.ConclusionsWe conclude that flexible pedicels permit the levering of reproductive structures onto a hovering bird. Hummingbirds, as uniquely large, hovering pollinators, differ from flies or bees which are too small to cause levering of flowers while hovering. Thus, flexible pedicels may be an adaptation to hummingbird pollination, in particular due to hummingbird size. We further speculate that this mechanism is effective only in radially symmetric flowers; in contrast, zygomorphic hummingbird-pollinated flowers are usually more or less horizontally oriented rather than having pendulous flowers and flexible pedicels.
- Published
- 2020
35. Induction of the sticky plant defense syndrome in wild tobacco
- Author
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Karban, Richard, LoPresti, Eric, Pepi, Adam, and Grof‐Tisza, Patrick
- Subjects
Plant Biology ,Biological Sciences ,Ecology ,Environmental Sciences ,Animals ,Herbivory ,Insecta ,Plant Leaves ,Plant Nectar ,Tobacco ,herbivory ,induced defense ,plant fitness ,predators ,protective mutualism ,structural equation modeling ,structural equation modeling ,Ecological Applications ,Evolutionary Biology ,Zoology ,Ecological applications - Abstract
Many plants engage in protective mutualisms, offering resources such as extrafloral nectar and shelters to predatory arthropods in exchange for protection against herbivores. Recent work indicates that sticky plants catch small insects and provide this carrion to predators who defend the plants against herbivores. In this study, we investigated whether wild tobacco, Nicotiana attenuata, fits this sticky plant defense syndrome that has been described for other sticky plants. We developed a bioassay for stickiness involving the number of flies that adhered to flowers, the stickiest tissues. In surveys conducted over three field seasons at four sites, we found that the number of carrion that adhered to a plant was positively correlated with the number of predators that we observed foraging over its surfaces. The number of predators was positively correlated with the number of seed capsules that the plant produced, a measure of lifetime female reproductive success. Structural equation modeling indicated strong support for the causal path linking carrion numbers to predator numbers to capsule production. We investigated whether stickiness was an inducible trait and examined two potential cues. We found that experimental clipping of rosette leaves induced greater stickiness, although clipping of neighboring sagebrush leaves did not. Damage to leaf tissue is likely to be a more reliable predictor of risk than is damage to a neighboring plant. The sticky plant defense syndrome is a widespread protective mutualism; its strength and ecological relevance can adjust as risk of herbivory changes.
- Published
- 2019
36. The effects of pulsed fertilization and chronic herbivory by periodical cicadas on tree growth
- Author
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Yang, Louie H and Karban, Richard
- Subjects
Environmental Sciences ,Biological Sciences ,Ecology ,Animals ,Hemiptera ,Herbivory ,Trees ,absolute and relative growth rates ,amplification ,attenuation ,chronic belowground herbivory ,Magicicada spp ,periodical cicadas ,pulsed detrital subsidy ,pulsed fertilization ,resource pulses ,root herbivores ,temporally explicit ecology ,tree growth ,Magicicada spp. ,Ecological Applications ,Evolutionary Biology ,Zoology ,Ecological applications - Abstract
Although many studies have investigated plant growth in the context of episodic herbivory and pressed resource availability, relatively few have examined how plant growth is affected by pulsed resources and chronic herbivory. Periodical cicada (Magicicada spp.) adults represent a pulsed detrital subsidy that fertilizes plants, and live cicada nymphs are long-lived root-feeding herbivores. Previous studies of cicada herbivory effects have been inconclusive, and previous studies of cicada-mediated fertilization did not examine effects on trees, or on a multiyear timescale. Here, we describe the results of a 3-yr experiment that factorially manipulated the presence and absence of cicada fertilization and herbivory in a population of 100 American sycamore (Platanus occidentalis) trees. We found that cicada fertilization strongly increased tree growth in the year of emergence, creating differences in tree size that persisted at least 2 yr later. By comparison, we did not detect reductions in tree growth associated with cicada herbivory in any year of this experiment. However, cicada herbivory reduced the densities of, and damage from, other aboveground herbivores. These results suggest that cicadas affect the size structure of forests over multiple years, and raise questions about how cicada-mediated fertilization and herbivory will affect tree growth over longer timescales.
- Published
- 2019
37. Chewing and other cues induce grass spines that protect meristems
- Author
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Karban, Richard and Takabayashi, Junji
- Subjects
Plant behavior ,Defense ,Resistance ,Hairs ,Prickles ,Unidirectional ,Anisotropic ,Herbivores ,Grasshoppers ,Volatile ,Plant communication ,Ecology ,Plant Biology ,Zoology ,Entomology - Abstract
Grasses frequently have unidirectional hairs, prickles, and spines; these leaf features have been hypothesized to move herbivores and their chewing damage away from grass meristems, which are located basally. Observations of chewing damage to two grasses, Andropogon virginicus and Phragmites australis, were consistent with this hypothesis as leaf tips received 10 × and 2 × more damage than bases. Grasshoppers were no more likely to land on leaf tips than bases although they oriented towards the tips after landing. Leaves of A. virginicus that were damaged by chewing herbivores had fewer spines than leaves on the same or neighboring plants that lacked damage. This suggests that herbivores chose less spiny leaves. At a larger spatial scale, plants in neighborhoods favorable for grasshoppers had more spines than plants in less favorable neighborhoods. We found no evidence that marginal spines allowed leaves to shed water more rapidly, a potential alternative benefit. The density of spines on new leaves increased following cues of damage. A. virginicus leaves produced after an adjacent leaf had been clipped with scissors had 13% more spines than new leaves on unclipped plants. Clipping with scissors failed to increase spine density for new P. australis leaves although experimental chewing by caterpillars led to the production of new leaves with 24% more spines than controls. Unchewed new leaves within 20 cm of a chewed neighbor had 13% more spines than controls. Grasses are capable of responding to cues of tissue damage to their own and neighboring leaves, potentially reducing herbivory to meristems.
- Published
- 2019
38. Unidirectional grass hairs usher insects away from meristems.
- Author
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Karban, Richard, LoPresti, Eric, Vermeij, Geerat J, and Latta, Robert
- Subjects
Hair ,Animals ,Poaceae ,Plant Leaves ,Meristem ,Ecosystem ,Herbivory ,Defense ,Leaf hairs ,Movement ,Pubescence ,Tolerance ,Ecology - Abstract
Grasses are major agricultural products worldwide and they are critical to ecosystem function in many terrestrial habitats. Despite their global importance, we know relatively little about their defenses against herbivory. Grasses tend to be tolerant of leaf loss because their valuable meristems are located underground, out of reach for above ground herbivores. Many grasses have unidirectional leaf hairs, prickles, and spines that make moving up the leaf blade easy, but make moving down, toward the meristem, difficult. We tested the hypothesis that unidirectional grass hairs direct small arthropod herbivores away from the meristems. In a field survey of the distribution of herbivore damage, we found that leaf tips received five times more damage than leaf bases for Avena barbata. Early-instar grasshoppers fed three times as often on leaf tops as on leaf bases of pubescent individuals in a common garden laboratory experiment. This effect was not observed for glabrous individuals where grasshoppers damaged leaf bases as often as leaf tops. A common generalist caterpillar, Heliothus virescens, was more than twice as likely to turn in the direction of the hairs, away from the meristems, when it encountered pubescent leaves of A. barbata. However, larger caterpillars of the generalist feeder Arctia virginalis showed no directional bias when they encountered pubescent leaves. In common garden experiments, selection on pubescence was weak and inconsistent over space and time. Under some circumstances, individuals of A. barbata with pubescent leaves were more likely to produce seeds than were individuals with fewer hairs. The surveys, behavioral experiments with small insects, and estimates of lifetime reproduction all support the hypothesis that unidirectional leaf hairs on A. barbata, and perhaps other grasses, serve as an unstudied defense that direct small herbivores away from the meristems.
- Published
- 2019
39. (Re)Writing the City from Within: An Exploratory Approach to Sustainable Urban Morphologies from the Dialogue Between Public Space and Public Transport in Barcelona's Trambesòs.
- Author
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Reyes-Schade, Emilio, Grande-Ayala, Carlos, Imam, Ayman, M. Gbban, Abdulrhman, Summan, Maher, Karban, Abdullah Saeed, Majrashi, Abdulrahman Abdulaziz, and Alamoudi, Mohammed
- Abstract
Research on urban transport and mobility through everyday practices has generated new theoretical and methodological approaches to achieve more sustainable urban morphologies. This paper focuses on the characterization of the process of urban (re)qualification through the binomial of public space–public transport, based on the analysis of Trambesòs tramway in Barcelona, from 2004 to the present. This methodology consisted of an exploratory morphological analysis that identified patterns derived from punctual interventions, articulation axes, and saturation pieces in the urban fabric. The results revealed three main morphological patterns: the configuration of a particular character in each public space intervention associated with the tramway, the morphological improvement and dynamization of the urban fabric, and the transformation of the city's image through the standardization of accessibility conditions, a key social sustainability indicator. In the discussion, the results are triangulated with the concepts of urban morphology and social processes and compared with quantitative studies, which can serve as a foundation for further in-depth research. In conclusion, the tramway has facilitated a transition from urban discontinuity and segregation to continuity and cohesion, highlighting the impact of the public space–public transport binomial on more sustainable urban morphologies. This contributes to how urban morphological analysis provides new approaches to understanding public transport as an extension of public space and support for urban habitability. [ABSTRACT FROM AUTHOR]
- Published
- 2024
- Full Text
- View/download PDF
40. Plant trait covariance and nonlinear averaging: a reply to Koussoroplis et al.
- Author
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Wetzel, William, Kharouba, Heather, Robinson, Moria, Holyoak, Marcel, and Karban, Richard
- Abstract
SADIE (Spatial Analysis by Distance Indices) is designed specifically to quantify patterns in spatially-referenced count-based data. It was developed for dealing with data that can be considered ‘patchy’. Such distributions are commonly found, for example, in insect populations where discrete patches of individuals are often evident. The distributions of such populations have ‘hard edges’, with patches and gaps occurring spatially. In these cases variance of abundance does not vary smoothly, but discontinuously. In this paper we outline the use of SADIE and provide free access to the SADIE software suite, establishing Rethinking Ecology as its permanent home. Finally, we review the use of SADIE and demonstrate its use in a wide variety of sub-disciplines within the general field of ecology.
- Published
- 2019
41. Plant trait covariance and nonlinear averaging: A reply to Koussoroplis et al.
- Author
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Wetzel, W, Kharouba, H, Robinson, M, Holyoak, M, and Karban, R
- Abstract
SADIE (Spatial Analysis by Distance Indices) is designed specifically to quantify patterns in spatially-referenced count-based data. It was developed for dealing with data that can be considered ‘patchy’. Such distributions are commonly found, for example, in insect populations where discrete patches of individuals are often evident. The distributions of such populations have ‘hard edges’, with patches and gaps occurring spatially. In these cases variance of abundance does not vary smoothly, but discontinuously. In this paper we outline the use of SADIE and provide free access to the SADIE software suite, establishing Rethinking Ecology as its permanent home. Finally, we review the use of SADIE and demonstrate its use in a wide variety of sub-disciplines within the general field of ecology.
- Published
- 2019
42. Decline of meadow spittlebugs, a previously abundant insect, along the California coast
- Author
-
Karban, Richard and Huntzinger, Mikaela
- Subjects
Ecological Applications ,Biological Sciences ,Ecology ,Zoology ,Environmental Sciences ,Animals ,California ,Grassland ,Insecta ,Plant Diseases ,Evolutionary Biology ,Ecological applications - Published
- 2018
43. A judgment and decision‐making model for plant behavior
- Author
-
Karban, Richard and Orrock, John L
- Subjects
Plant Biology ,Biological Sciences ,Behavioral and Social Science ,Animals ,Bayes Theorem ,Biological Evolution ,Herbivory ,Judgment ,Plants ,cognition ,defense ,error ,herbivory ,information ,psychology ,signal ,Ecological Applications ,Ecology ,Evolutionary Biology ,Zoology ,Ecological applications - Abstract
Recently plant biologists have documented that plants, like animals, engage in many activities that can be considered as behaviors, although plant biologists currently lack a conceptual framework to understand these processes. Borrowing the well-established framework developed by psychologists, we propose that plant behaviors can be constructively modeled by identifying four distinct components: (1) a cue or stimulus that provides information, (2) a judgment whereby the plant perceives and processes this informative cue, (3) a decision whereby the plant chooses among several options based on their relative costs and benefits, and (4) action. Judgment for plants can be determined empirically by monitoring signaling associated with electrical, calcium, or hormonal fluxes. Decision-making can be evaluated empirically by monitoring gene expression or differential allocation of resources. We provide examples of the utility of this judgment and decision-making framework by considering cases in which plants either successfully or unsuccessfully induced resistance against attacking herbivores. Separating judgment from decision-making suggests new analytical paradigms (i.e., Bayesian methods for judgment and economic utility models for decision-making). Following this framework, we propose an experimental approach to plant behavior that explicitly manipulates the stimuli provided to plants, uses plants that vary in sensory abilities, and examines how environmental context affects plant responses. The concepts and approaches that follow from the judgment and decision-making framework can shape how we study and understand plant-herbivore interactions, biological invasions, plant responses to climate change, and the susceptibility of plants to evolutionary traps.
- Published
- 2018
44. As temperature increases, predator attack rate is more important to survival than a smaller window of prey vulnerability
- Author
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Pepi, Adam, Grof‐Tisza, Patrick, Holyoak, Marcel, and Karban, Richard
- Subjects
Climate Action ,Animals ,Ants ,Climate Change ,Lepidoptera ,Predatory Behavior ,Temperature ,ants ,caterpillars ,climate change ,predation ,temperature dependence ,trophic interactions ,window of vulnerability ,Ecological Applications ,Ecology ,Evolutionary Biology - Abstract
Climate change can have strong effects on species interactions and community structure. Temperature-dependent effects on predator-prey interactions are a major mechanism through which these effects occur. To understand the net effects of predator attack rates and dynamic windows of prey vulnerability, we examined the impacts of temperature on the interaction of a caterpillar (Arctia virginalis) and its ant predator (Formica lasioides). We conducted field experiments to examine attack rates on caterpillars relative to temperature, ant abundance, and body size, and laboratory experiments to determine the effects of temperature on caterpillar growth. We modeled temperature-dependent survival based on the integrated effects of temperature-dependent growth and temperature- and size-dependent predation. Attack rates on caterpillars increased with warming and ant recruitment, but decreased with caterpillar size. Caterpillar growth rates increased with temperature, narrowing the window of vulnerability. The model predicted that net caterpillar survival would decrease with temperature, suggesting that A. virginalis populations could be depressed with future climate warming. Theoretical work suggests that the net outcome of predator-prey interactions with increasing temperature depends on the respective responses of interacting species in terms of velocity across space, whereas the present study suggests the importance of effects of temperature on prey window of vulnerability, or "velocity" across time.
- Published
- 2018
45. In vivo fitness of carbapenem-resistant Acinetobacter baumannii strains in murine infection is associated with treatment failure in human infections
- Author
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Paul, Mical, Benattar, Yael Dishon, Dickstein, Yaakov, Bitterman, Roni, Zayyad, Hiba, Koppel, Fidi, Zak-Doron, Yael, Altunin, Sergey, Andria, Nizar, Neuberger, Ami, Stern, Anat, Petersiel, Neta, Raines, Marina, Karban, Amir, Leibovici, Leonard, Yahav, Dafna, Eliakim-Raz, Noa, Zusman, Oren, Elbaz, Michal, Atamna, Heyam, Daitch, Vered, Babich, Tanya, Carmeli, Yehuda, Nutman, Amir, Adler, Amos, Levi, Inbar, Daikos, George L., Skiada, Anna, Pavleas, Ioannis, Antoniadou, Anastasia, Kotsaki, Antigoni, Durante-Mangoni, Emanuele, Andini, Roberto, Iossa, Domenico, Bernardo, Mariano, Cavezza, Giusi, Bertolino, Lorenzo, Giuffre, Giuseppe, Giurazza, Roberto, Ruocco, Giuseppe, Galdo, Maria, Murino, Patrizia, Cristinziano, Adriano, Corcione, Antonio, Zampino, Rosa, Mouton, Johan, Friberg, Lena, Theuretzbacher, Ursula, Temkin, Elizabeth, Lellouche, Jonathan, Rakovitsky, Nadya, Hameir, Amichay, Daikos, George, Dishon, Yael, Eliakim, Noa, and Friberg, Lena E.
- Published
- 2022
- Full Text
- View/download PDF
46. Consequences of Piñon-Juniper Woodland Fuel Reduction: Prescribed Fire Increases Soil Erosion While Mastication Does Not
- Author
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Karban, Claire C., Miller, Mark E., Herrick, Jeffrey E., and Barger, Nichole N.
- Published
- 2022
- Full Text
- View/download PDF
47. Wet years have more caterpillars: interacting roles of plant litter and predation by ants
- Author
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Karban, Richard, Grof-Tisza, Patrick, and Holyoak, Marcel
- Published
- 2017
48. Tradeoff between resistance induced by volatile communication and over-topping vertical growth
- Author
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Karban, Richard
- Subjects
Biological Sciences ,Ecology ,Artemisia ,Cues ,Herbivory ,Plant Development ,Volatile Organic Compounds ,Costs ,cues ,herbivory ,plant defense ,sagebrush ,Artemisia tridentata ,Biochemistry and Cell Biology ,Plant Biology ,Horticultural Production ,Plant Biology & Botany ,Plant biology - Abstract
Plants commonly respond to reliable cues about herbivores by inducing greater defenses. Defenses are assumed to incur costs for plants when they are not needed. Sagebrush responds to volatile cues from experimentally clipped neighbors to induce resistance against chewing herbivores. Rather than experiencing costs, sagebrush seedlings that responded to dishonest cues were previously found to have increased survival and established plants that responded produced more inflorescences and new lateral branches. Here I report that young sagebrush plants that responded to cues added less vertical growth than controls that were not presented with volatile cues. This tradeoff between induced resistance and vertical, overtopping growth may allow agronomists to increase defense without sacrificing desirable traits. Overtopping growth is often beneficial for wild plants but often detrimental in agriculture.
- Published
- 2017
49. Precipitation affects plant communication and defense
- Author
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Pezzola, Enrico, Mancuso, Stefano, and Karban, Richard
- Subjects
Plant Biology ,Biological Sciences ,Ecology ,Environmental Sciences ,Artemisia ,Herbivory ,Plants ,Seasons ,Volatile Organic Compounds ,Artemisia tridentata ,communication ,eavesdropping ,herbivory ,precipitation ,volatiles ,water availability ,Artemisia tridentata ,Ecological Applications ,Evolutionary Biology ,Zoology ,Ecological applications - Abstract
Anti-herbivore defense shows high levels of both inter- and intraspecific variability. Defending against herbivores may be costly to the plant when it requires a tradeoff in allocation between defense and other missed opportunities, such as reproduction. Indeed, the plastic expression of defensive traits allows the plant to invest resources in defense only when the risk of being damaged actually increases, avoiding wasted resources. Plants may assess risk by responding to volatile cues emitted by neighbors that are under attack. Most plastic responses likely depend on environmental conditions. In this experiment, we investigated the effect of water availability on resistance induced by volatile cues in sagebrush. We found that plants receiving additional water over summer and/or volatile cues from neighbor donor plants showed reduced herbivore damage compared to control plants. Interestingly, we found no evidence of interactions between additional water and volatile cues. We performed an inferential analysis comparing historical records of the levels of herbivore damage during different years that had different temperature and precipitation accumulations. Results confirmed findings from the experiment, as the regression model indicated that sagebrush was better defended during wetter and hotter seasons. Reports from the literature indicated that sagebrush is extremely sensitive to water availability in the soil. We suggest that water availability may directly affect resistance of herbivory as well as sensitivity to cues of damage. Costs and benefits of allocating resources to defensive traits may vary with environmental conditions.
- Published
- 2017
50. Effects of a multi-year drought on a drought-adapted shrub, Artemisia tridentata
- Author
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Karban, Richard and Pezzola, Enrico
- Subjects
Good Health and Well Being ,Chemotype ,Climate change ,Competition ,Mortality ,Reproduction ,Sagebrush ,Shade ,Water stress ,Ecology ,Plant Biology - Abstract
Models of climate change predict more variable precipitation for much of western North America, including more severe multi-year droughts. Droughts are known to increase mortality to trees although less is known about effects on shrubs from arid environments and about effects on reproduction. In this study, we followed a cohort of young sagebrush plants from 2010 to 2016, a period that included a severe drought from 2012 to 2015. Plants experienced little mortality preceding and during the drought. However, in the year following the drought, 14% of individuals died and 33% of branches on living plants died. There was little flowering in the years preceding the drought and flowering increased in each successive year from 2014 to 2016. Plants that produced more flowers in 2015 had more dead branches in 2016. Larger plants had fewer branches that died. Contrary to expectations, afternoon shade was not associated with greater survival or flowering, perhaps because shaded plants were in proximity to large trees which likely competed for water. Plants of the two common chemotypes had similar rates of survival and flowering. Experimental watering during the summer of 2015 did not affect survival and may have increased flowering in 2016. If multi-year droughts become more common in the future, even drought-adapted shrubs may be expected to suffer high rates of mortality.
- Published
- 2017
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