728 results on '"Hooper, R"'
Search Results
2. Preclinical evidence for employing MEK inhibition in NRAS mutated pediatric gastroenteropancreatic neuroendocrine-like tumors
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Quinn, Colin H., Beierle, Andee M., Williams, Adele P., Marayati, Raoud, Bownes, Laura V., Market, Hooper R., Erwin, Michael E., Aye, Jamie M., Stewart, Jerry E., Mroczek-Musulman, Elizabeth, Yoon, Karina J., and Beierle, Elizabeth A.
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- 2024
- Full Text
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3. Expression of Interest for Evolution of the Mu2e Experiment
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Abusalma, F., Ambrose, D., Artikov, A., Bernstein, R., Blazey, G. C., Bloise, C., Boi, S., Bolton, T., Bono, J., Bonventre, R., Bowring, D., Brown, D., Byrum, K., Campbell, M., Caron, J. -F., Cervelli, F., Chokheli, D., Ciampa, K., Ciolini, R., Coleman, R., Cronin-Hennessy, D., Culbertson, R., Cummings, M. A., Daniel, A., Davydov, Y., Demers, S., Denisov, D., Denisov, S., Di Falco, S., Diociaiuti, E., Djilkibaev, R., Donati, S., Donghia, R., Drake, G., Dukes, E. C., Echenard, B., Edmonds, A., Ehrlich, R., Evdokimov, V., Fabbricatore, P., Ferrari, A., Frank, M., Gaponenko, A., Gatto, C., Giorgio, Z., Giovannella, S., Giusti, V., Glass, H., Glenzinski, D., Goodenough, L., Group, C., Happacher, F., Harkness-Brennan, L., Hedin, D., Heller, K., Hitlin, D., Hocker, A., Hooper, R., Horton-Smith, G., Hu, C., Hung, P. Q., Hungerford, E., Jenkins, M., Jones, M., Kargiantoulakis, M., Khaw, K. S., Kiburg, B., Kolomensky, Y., Kozminski, J., Kutschke, R., Lancaster, M., Lin, D., Logashenko, I., Lombardo, V., Luca, A., Lukicov, G., Lynch, K., Martini, M., Mazzacane, A., Miller, J., Miscetti, S., Morescalchi, L., Mott, J., Mueller, S. E., Murat, P., Nagaslaev, V., Neuffer, D., Oksuzian, Y., Pasciuto, D., Pedreschi, E., Pezzullo, G., Pla-Dalmau, A., Pollack, B., Popov, A., Popp, J., Porter, F., Prebys, E., Pronskikh, V., Pushka, D., Quirk, J., Rakness, G., Ray, R., Ricci, M., Röhrken, M., Rusu, V., Saputi, A., Sarra, I., Schmitt, M., Spinella, F., Stratakis, D., Strauss, T., Talaga, R., Tereshchenko, V., Tran, N., Tschirhart, R., Usubov, Z., Velasco, M., Wagner, R., Wang, Y., Werkema, S., Whitmore, J., Winter, P., Xia, L., Zhang, L., Zhu, R. -Y., Zutshi, V., and Zwaska, R.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
We propose an evolution of the Mu2e experiment, called Mu2e-II, that would leverage advances in detector technology and utilize the increased proton intensity provided by the Fermilab PIP-II upgrade to improve the sensitivity for neutrinoless muon-to-electron conversion by one order of magnitude beyond the Mu2e experiment, providing the deepest probe of charged lepton flavor violation in the foreseeable future. Mu2e-II will use as much of the Mu2e infrastructure as possible, providing, where required, improvements to the Mu2e apparatus to accommodate the increased beam intensity and cope with the accompanying increase in backgrounds., Comment: 17 pages, 4 figures, 1 table; Submitted to the Fermilab Physics Advisory Committee
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- 2018
4. Downregulation of PDGFRß Signaling Overcomes Crizotinib Resistance in a TYRO3 and ALK Mutated Neuroendocrine-Like Tumor
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Quinn, Colin H., Beierle, Andee M., Williams, Adele P., Marayati, Raoud, Bownes, Laura V., Markert, Hooper R., Aye, Jamie M., Stewart, Jerry E., Mroczek-Musulman, Elizabeth, Crossman, David K., Yoon, Karina J., and Beierle, Elizabeth A.
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- 2021
- Full Text
- View/download PDF
5. Novel PP2A-Activating Compounds in Neuroblastoma.
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Nazam, Nazia, Bownes, Laura V., Julson, Janet R., Quinn, Colin H., Erwin, Michael H., Marayati, Raoud, Markert, Hooper R., Shirley, Sorina, Stewart, Jerry E., Yoon, Karina J., Aye, Jamie, Ohlmeyer, Michael, and Beierle, Elizabeth A.
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PHOSPHORYLATION ,PHENOMENOLOGICAL biology ,ANTINEOPLASTIC agents ,CELL proliferation ,PHOSPHATASES ,XENOGRAFTS ,CELL motility ,IN vivo studies ,BIOCHEMISTRY ,CELLULAR signal transduction ,ESTERASES ,CELL lines ,GENE expression ,ONCOGENES ,SULFONAMIDES ,CELL survival ,NEUROBLASTOMA ,PHARMACODYNAMICS - Abstract
Simple Summary: Neuroblastoma is the third most common type of childhood cancer but is responsible for over 15% of all pediatric cancer deaths. Children with advanced disease have less than a 50% survival rate and are in desperate need of new treatment options. Protein phosphatase 2A (PP2A) is a protein that inhibits tumors, but it is turned off in neuroblastoma. We have previously shown that we can activate PP2A in neuroblastoma with certain drugs and decrease tumor growth, but these drugs also affect the function of the immune system. We now have new small molecules that activate PP2A without upsetting the immune system. We observed a decrease in tumor growth, proliferation, and motility with our novel PP2A activators. We feel that a better understanding of how activating PP2A inhibits neuroblastoma will lead to better treatments for these children. Background: Neuroblastoma (NB) remains one of the deadliest pediatric solid tumors. Recent advancements aimed at improving outcomes have been insufficient, and patients with high-risk NB continue to have a poor prognosis. Protein phosphatase 2A (PP2A) is a tumor suppressor protein downregulated in many cancers, including NB. PP2A activation has been shown to affect the malignant phenotype in other solid tumors. The present studies aim to investigate the effects of two novel PP2A activators as a NB therapeutic. Methods: Four established NB cell lines and a patient-derived xenoline were utilized to study the effect on cell viability, proliferation, motility, and in vivo tumor growth using two novel tricyclic sulfonamide PP2A activators, ATUX-3364 and ATUX-8385. Results: ATUX-3364 and ATUX-8385 increased PP2A activity. These PP2A activators led to decreased viability, proliferation, and motility of NB cells. Treatment of animals bearing NB tumors with ATUX-3364 or ATUX-8385 resulted in decreased tumor growth in MYCN-amplified SK-N-BE(2) tumors. At the molecular level, PP2A-based reactivation led to dephosphorylation of MYCN-S62 and decreased MYCN protein expression. Conclusions: PP2A activators decreased NB cell viability, proliferation, and motility. In vivo experiments show that PP2A activators have more significant effects on tumorigenesis in MYCN-amplified tumors. Finally, phosphorylation of MYCN protein was decreased following treatment with novel sulfonamide PP2A activators. These data and mechanistic insights may be useful for developing new PP2A-based therapies that target MYCN for the treatment of NB. [ABSTRACT FROM AUTHOR]
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- 2024
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6. Mu2e Technical Design Report
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Bartoszek, L., Barnes, E., Miller, J. P., Mott, J., Palladino, A., Quirk, J., Roberts, B. L., Crnkovic, J., Polychronakos, V., Tishchenko, V., Yamin, P., Cheng, C. -h., Echenard, B., Flood, K., Hitlin, D. G., Kim, J. H., Miyashita, T. S., Porter, F. C., Röhrken, M., Trevor, J., Zhu, R. -Y., Heckmaier, E., Kang, T. I., Lim, G., Molzon, W., You, Z., Artikov, A. M., Budagov, J. A., Davydov, Yu. I., Glagolev, V. V., Simonenko, A. V., Usubov, Z. U., Oh, S. H., Wang, C., Ambrosio, G., Andreev, N., Arnold, D., Ball, M., Bernstein, R. H., Bianchi, A., Biery, K., Bossert, R., Bowden, M., Brandt, J., Brown, G., Brown, H., Buehler, M., Campbell, M., Cheban, S., Chen, M., Coghill, J., Coleman, R., Crowley, C., Deshpande, A., Deuerling, G., Dey, J., Dhanaraj, N., Dinnon, M., Dixon, S., Drendel, B., Eddy, N., Evans, R., Evbota, D., Fagan, J., Feher, S., Fellenz, B., Friedsam, H., Gallo, G., Gaponenko, A., Gardner, M., Gaugel, S., Genser, K., Ginther, G., Glass, H., Glenzinski, D., Hahn, D., Hansen, S., Hartsell, B., Hays, S., Hocker, J. A., Huedem, E., Huffman, D., Ibrahim, A., Johnstone, C., Kashikhin, V., Kashikhin, V. V., Kasper, P., Kiper, T., Knapp, D., Knoepfel, K., Kokoska, L., Kozlovsky, M., Krafczyk, G., Kramp, M., Krave, S., Krempetz, K., Kutschke, R. K., Kwarciany, R., Lackowski, T., Lamm, M. J., Larwill, M., Leavell, F., Leeb, D., Leveling, A., Lincoln, D., Logashenko, V., Lombardo, V., Lopes, M. L., Makulski, A., Martinez, A., McArthur, D., McConologue, F., Michelotti, L., Mokhov, N., Morgan, J., Mukherjee, A., Murat, P., Nagaslaev, V., Neuffer, D. V., Nicol, T., Niehoff, J., Nogiec, J., Olson, M., Orris, D., Ostojic, R., Page, T., Park, C., Peterson, T., Pilipenko, R., Pla-Dalmau, A., Poloubotko, V., Popovic, M., Prebys, E., Prieto, P., Pronskikh, V., Pushka, D., Rabehl, R., Ray, R. E., Rechenmacher, R., Rivera, R., Robotham, W., Rubinov, P., Rusu, V. L., Scarpine, V., Schappert, W., Schoo, D., Stefanik, A., Still, D., Tang, Z., Tanovic, N., Tartaglia, M., Tassotto, G., Tinsley, D., Tschirhart, R. S., Vogel, G., Wagner, R., Wands, R., Wang, M., Werkema, S., White Jr., H. B., Whitmore, J., Wielgos, R., Woods, R., Worel, C., Zifko, R., Ciambrone, P., Colao, F., Cordelli, M., Corradi, G., Dane, E., Giovannella, S., Happacher, F., Luca, A., Miscetti, S., Ponzio, B., Pileggi, G., Saputi, A., Sarra, I., Soleti, R. S., Stomaci, V., Martini, M., Fabbricatore, P., Farinon, S., Musenich, R., Alexander, D., Daniel, A., Empl, A., Hungerford, E. V., Lau, K., Gollin, G. D., Huang, C., Roderick, D., Trundy, B., Brown, D. Na., Ding, D., Kolomensky, Yu. G., Lee, M. J., Cascella, M., Grancagnolo, F., Ignatov, F., Innocente, A., L'Erario, A., Miccoli, A., Maffezzoli, A., Mazzotta, P., Onorato, G., Piacentino, G. M., Rella, S., Rossetti, F., Spedicato, M., Tassielli, G., Taurino, A., Zavarise, G., Hooper, R., Brown, D. No., Djilkibaev, R., Matushko, V., Ankenbrandt, C., Boi, S., Dychkant, A., Hedin, D., Hodge, Z., Khalatian, V., Majewski, R., Martin, L., Okafor, U., Pohlman, N., Riddel, R. S., Shellito, A., de Gouvea, A. L., Cervelli, F., Carosi, R., Di Falco, S., Donati, S., Lomtadze, T., Pezzullo, G., Ristori, L., Spinella, F., Jones, M., Corcoran, M. D., Orduna, J., Rivera, D., Bennett, R., Caretta, O., Davenne, T., Densham, C., Loveridge, P., Odell, J., Bomgardner, R., Dukes, E. C., Ehrlich, R., Frank, M., Goadhouse, S., Group, R., Ho, E., Ma, H., Oksuzian, Y., Purvis, J., Wu, Y., Hertzog, D. W., Kammel, P., Lynch, K. R., and Popp, J. L.
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Physics - Instrumentation and Detectors ,High Energy Physics - Experiment - Abstract
The Mu2e experiment at Fermilab will search for charged lepton flavor violation via the coherent conversion process mu- N --> e- N with a sensitivity approximately four orders of magnitude better than the current world's best limits for this process. The experiment's sensitivity offers discovery potential over a wide array of new physics models and probes mass scales well beyond the reach of the LHC. We describe herein the preliminary design of the proposed Mu2e experiment. This document was created in partial fulfillment of the requirements necessary to obtain DOE CD-2 approval., Comment: compressed file, 888 pages, 621 figures, 126 tables; full resolution available at http://mu2e.fnal.gov; corrected typo in background summary, Table 3.4
- Published
- 2015
7. End-of-life solution for CCA-treated timber via pyrolysis and arsenic recovery
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Junk, G S, Hooper, R J, and Pang, S
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- 2021
8. Focal Adhesion Kinase Inhibition Contributes to Tumor Cell Survival and Motility in Neuroblastoma Patient-Derived Xenografts
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Laura L. Stafman, Adele P. Williams, Raoud Marayati, Jamie M. Aye, Hooper R. Markert, Evan F. Garner, Colin H. Quinn, Shoeb B. Lallani, Jerry E. Stewart, Karina J. Yoon, Kimberly Whelan, and Elizabeth A. Beierle
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Medicine ,Science - Abstract
Abstract Patient-derived xenografts (PDXs) provide an opportunity to evaluate the effects of therapies in an environment that more closely resembles the human condition than that seen with long-term passage cell lines. In the current studies, we investigated the effects of FAK inhibition on two neuroblastoma PDXs in vitro. Cells were treated with two small molecule inhibitors of FAK, PF-573,228 (PF) and 1,2,4,5-benzentetraamine tetrahydrochloride (Y15). Following FAK inhibition, cell survival and proliferation decreased significantly and cell cycle arrest was seen in both cell lines. Migration and invasion assays were used to determine the effect of FAK inhibition on cell motility, which decreased significantly in both cell lines in the presence of either inhibitor. Finally, tumor cell stemness following FAK inhibition was evaluated with extreme limiting dilution assays as well as with immunoblotting and quantitative real-time PCR for the expression of stem cell markers. FAK inhibition decreased formation of tumorspheres and resulted in a corresponding decrease in established stem cell markers. FAK inhibition decreased many characteristics of the malignant phenotype, including cancer stem cell like features in neuroblastoma PDXs, making FAK a candidate for further investigation as a potential target for neuroblastoma therapy.
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- 2019
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9. Molecular characterisation of NAADP-gated two-pore channels
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Hooper, R.
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570 - Abstract
Nicotinic acid adenine dinucleotide phosphate (NAADP) is a potent intracellular calcium (Ca2+)-mobilising second messenger implicated in a variety of physiological processes. Unusually, NAADP mediates Ca2+ release from acidic organelles, such as the lysosome, and not the endoplasmic reticulum. Recently, members of the voltagegated ion channel super-family, the two-pore channels (TPCs), have been identified as molecular targets of NAADP. The aim of this thesis is to investigate the molecular properties of these poorly characterised ion channels. In this study, I present the cloning of a novel TPC isoform from the sea urchin, an extensively used model organism for NAADP signalling, and the subsequent characterisation of the complete ancestral sea urchin TPC family. Sea urchin TPCs appeared to be Nglycosylated in an isoform-specific manner, displayed anomalous migration upon fractionation, similar to endogenous NAADP-binding proteins, and localised to the endo-lysosomal system. To characterise the properties of human TPCs, antibodies suitable for Western blot and immunocytochemistry analyses were identified. The topology of human TPCs was examined using in silico prediction methods, combined with fluorescence protease protection assays and the mapping of TPC antibody epitopes and N-glycosylation sites. Human TPCs conformed to a twelve transmembrane region model with cytosolic termini. The quaternary structure of TPCs was investigated using FRET analysis, sucrose density gradients, gel filtration, co-immunoprecipitation, and chemical cross-linking of both full-length TPCs and individual hydrophobic domains. TPCs likely assemble as dimers possibly within a high molecular weight protein complex. Finally, I show that the N-terminus of TPC1 regulates NAADP-mediated Ca2+ release and identify a potential physiological role for TPC2 in pigmentation.
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- 2011
10. The responsibility to implement 'The Responsibility to Protect'
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Hooper, R. S.
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327 - Abstract
The Responsibility to Protect offers a morally based policy that places a new responsibility on the international community to protect populations from extremes of harm caused by governments. From the policy’s text, the reason for action seems to lie, most fundamentally, in an expression of ‘our common humanity’. However, The Responsibility to Protect does not offer any justification for its proposals. It responds to the question ‘what ought to be done?’ but answers the question ‘what can be done?’ leaving in between a gap in the moral credibility of action. The thesis explores what this lack of philosophical underpinning means to the persuasive power of the policy. The thesis then examines the claim of sovereignty as responsibility and finds it confused and incomplete and lacking the detail necessary for coherent implementation. It uses the Aristotelian square of opposition to investigate the tripartite nature of the new responsibilities to prevent and rebuild. Finally, the thesis investigates the policy’s apparent assumption that an ethically based policy of humanitarian intervention can be appropriately guided by the ethical rules of war. It asks if war and humanitarian intervention are the same thing and finds that they are not. It then explores the incoherence created by using the Just War Tradition for guide R2P. If The Responsibility to Protect offers no greater generation of will and effective action to humanitarian intervention than the current ad hoc process does, its establishment as UN policy becomes a pyrrhic victory. It will result in further anomalies in response by the UN, and consequent damage to the reputation and credibility of the UN as the guardian of international peace and security.
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- 2010
11. Development of techniques for the study of protein systems
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Hooper, R. J.
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572.8 - Abstract
This dissertation descries work undertaken to investigate protein systems on nano- and micro-levels. The principal objective was the application of fluid dynamic gauging with simultaneous direct imaging of the changes in microstructure occurring during the cleaning of whey protein foulants. Laser confocal microscopy allowed images of the internal microstructure, on the micron and tens-of-microns scales, to be matched against the changing macro-properties of a whey protein film during cleaning, as measured by the gauge on the tens-of-microns scale. This work constitutes proof of concept; the successful capture of gauging and microscopy data displaying consistent, complementary phenomena proved the efficacy of the experimental concept. Achievement of this goal required first establishing the operating range within which use of the gauge caused minimal interference with the film being studied and, secondly, the development of a whey protein foulant that reproduced behavioural characteristics of fouling layers studied by previous researchers while also being suitable for microscopy. Both these objectives were achieved. That minimal interference range was established by comparing gauging cleaning profiles of particular deposits within duct flows against alternative cleaning profiles obtained by measuring the changing thermal resistances of the deposits. It was shown that the suitability of the operating regime was dependent on the capacity of the deposit to resist the suction pressure of the gauge. Stresses that exceed the cohesive and adhesive strengths of a deposit were used to explore in more detail the adhesive properties of foulant layers, using dried tomato purée as a model system. A quasi-stagnant system was used, in which the only flow present was that through the gauge. Thus the gauge was the source of all stresses imposed on the deposit by flow; this enabled accurate inference of the imposed normal stress.
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- 2006
12. Using 3D-bioprinted models to study pediatric neural crest-derived tumors
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Colin H. Quinn, Andee M. Beierle, Janet R. Julson, Michael E. Erwin, Hasan Alrefai, Hooper R. Markert, Jerry E. Stewart, Sara Claire Hutchins, Laura V. Bownes, Jamie M. Aye, Elizabeth Mroczek-Musulman, Patricia H. Hicks, Karina J. Yoon, Christopher D. Willey, and Elizabeth A. Beierle
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Materials Science (miscellaneous) ,Industrial and Manufacturing Engineering ,Biotechnology - Abstract
The use of three-dimensional (3D) bioprinting has remained at the forefront of tissue engineering and has recently been employed for generating bioprinted solid tumors to be used as cancer models to test therapeutics. In pediatrics, neural crest-derived tumors are the most common type of extracranial solid tumors. There are only a few tumor-specific therapies that directly target these tumors, and the lack of new therapies remains detrimental to improving the outcomes for these patients. The absence of more efficacious therapies for pediatric solid tumors, in general, may be due to the inability of the currently employed preclinical models to recapitulate the solid tumor phenotype. In this study, we utilized 3D bioprinting to generate neural crest-derived solid tumors. The bioprinted tumors consisted of cells from established cell lines and patient-derived xenograft tumors mixed with a 6% gelatin/1% sodium alginate bioink. The viability and morphology of the bioprints were analyzed via bioluminescence and immunohisto chemistry, respectively. We compared the bioprints to traditional two-dimensional (2D) cell culture under conditions such as hypoxia and therapeutics. We successfully produced viable neural crest-derived tumors that retained the histology and immunostaining characteristics of the original parent tumors. The bioprinted tumors propagated in culture and grew in orthotopic murine models. Furthermore, compared to cells grown in traditional 2D culture, the bioprinted tumors were resistant to hypoxia and chemotherapeutics, suggesting that the bioprints exhibited a phenotype that is consistent with that seen clinically in solid tumors, thus potentially making this model superior to traditional 2D culture for preclinical investigations. Future applications of this technology entail the potential to rapidly print pediatric solid tumors for use in high-throughput drug studies, expediting the identification of novel, individualized therapies.
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- 2023
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13. Exercise training as a novel primary treatment for localised prostate cancer: a multi-site randomised controlled phase II study
- Author
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Bourke, L., Stevenson, R., Turner, R., Hooper, R., Sasieni, P., Greasley, R., Morrissey, D., Loosemore, M., Fisher, A., Payne, H., Taylor, S. J. C., and Rosario, D. J.
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- 2018
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14. Rapid Characterization of Solid Tumors Using Resonant Sensors
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Beierle, Andee M., primary, Quinn, Colin H., additional, Markert, Hooper R., additional, Carr, Adam, additional, Marayati, Raoud, additional, Bownes, Laura V., additional, Hutchins, Sara Claire, additional, Stewart, Jerry E., additional, Hill, Benjamin, additional, Ohlmeyer, Michael, additional, Reuel, Nigel F., additional, and Beierle, Elizabeth A., additional
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- 2022
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15. Long-term density-dependent changes in habitat selection in red deer (Cervus elaphus)
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Pérez-Barbería, F. J., Hooper, R. J., and Gordon, I. J.
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- 2013
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16. Rapid Characterization of Solid Tumors Using Resonant Sensors
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Andee M. Beierle, Colin H. Quinn, Hooper R. Markert, Adam Carr, Raoud Marayati, Laura V. Bownes, Sara Claire Hutchins, Jerry E. Stewart, Benjamin Hill, Michael Ohlmeyer, Nigel F. Reuel, and Elizabeth A. Beierle
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General Chemical Engineering ,General Chemistry - Abstract
Cancer continues to be a significant cause of non-traumatic pediatric mortality. Diagnosis of pediatric solid tumors is paramount to prescribing the correct treatment regimen. Recent efforts have focused on non-invasive methods to obtain tumor tissues, but one of the challenges encountered is the ability to obtain an adequate amount of viable tissue. In this study, a wireless, inductor-capacitor (LC) sensor was employed to detect relative permittivity of pediatric tumor tissues. There is a comparison of resonant frequencies of tumor tissues between live versus dead tissues, the primary tumor tissue versus tissue from the organs of origin or metastasis, and treated versus untreated tumors. The results show significant shifts in resonant frequencies between the comparison groups. Dead tissues demonstrated a significant shift in resonant frequencies compared to alive tissues. There were significant differences between the resonant frequencies of normal tissues versus tumor tissues. Resonant frequencies were also significantly different between primary tumors compared to their respective metastases. These data indicate that there are potential clinical applications of LC technology in the detection and diagnosis of pediatric solid tumors.
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- 2022
17. The batched stepped wedge design: A design robust to delays in cluster recruitment
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Kasza, J, Bowden, R, Hooper, R, Forbes, AB, Kasza, J, Bowden, R, Hooper, R, and Forbes, AB
- Abstract
Stepped wedge designs are an increasingly popular variant of longitudinal cluster randomized trial designs, and roll out interventions across clusters in a randomized, but step-wise fashion. In the standard stepped wedge design, assumptions regarding the effect of time on outcomes may require that all clusters start and end trial participation at the same time. This would require ethics approvals and data collection procedures to be in place in all clusters before a stepped wedge trial can start in any cluster. Hence, although stepped wedge designs are useful for testing the impacts of many cluster-based interventions on outcomes, there can be lengthy delays before a trial can commence. In this article, we introduce "batched" stepped wedge designs. Batched stepped wedge designs allow clusters to commence the study in batches, instead of all at once, allowing for staggered cluster recruitment. Like the stepped wedge, the batched stepped wedge rolls out the intervention to all clusters in a randomized and step-wise fashion: a series of self-contained stepped wedge designs. Provided that separate period effects are included for each batch, software for standard stepped wedge sample size calculations can be used. With this time parameterization, in many situations including when linear models are assumed, sample size calculations reduce to the setting of a single stepped wedge design with multiple clusters per sequence. In these situations, sample size calculations will not depend on the delays between the commencement of batches. Hence, the power of batched stepped wedge designs is robust to unexpected delays between batches.
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- 2022
18. Influence of a Thermal Discharge on Parasites of a Cold-Water Flatfish, Pleuronectes americanus, as a Bioindicator of Subtle Environmental Change
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Khan, R. A. and Hooper, R. G.
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- 2007
19. Targeting High-Risk Neuroblastoma Patient-Derived Xenografts with Oncolytic Virotherapy
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Colin H. Quinn, Andee M. Beierle, Sara Claire Hutchins, Raoud Marayati, Laura V. Bownes, Jerry E. Stewart, Hooper R. Markert, Michael H. Erwin, Jamie M. Aye, Karina J. Yoon, Gregory K. Friedman, Christopher D. Willey, James M. Markert, and Elizabeth A. Beierle
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Cancer Research ,neuroblastoma ,Oncology ,oncolytic viruses ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,immunotherapy ,three-dimensional printing ,patient-derived xenografts ,RC254-282 - Abstract
Cancer is the leading cause of death by disease in children, and over 15% of pediatric cancer-related mortalities are due to neuroblastoma. Current treatment options for neuroblastoma remain suboptimal as they often have significant toxicities, are associated with long-term side effects, and result in disease relapse in over half of children with high-risk disease. There is a dire need for new therapies, and oncolytic viruses may represent an effective solution. Oncolytic viruses attack tumor cells in two ways: direct infection of tumor cells leading to cytolysis, and production of a debris field that stimulates an anti-tumor immune response. Our group has previously shown that M002, an oncolytic herpes simplex virus (oHSV), genetically engineered to express murine interleukin-12 (mIL-12), was effective at targeting and killing long term passage tumor cell lines. In the current study, we investigated M002 in three neuroblastoma patient-derived xenografts (PDXs). PDXs better recapitulate the human condition, and these studies were designed to gather robust data for translation to a clinical trial. We found that all three PDXs expressed viral entry receptors, and that the virus actively replicated in the cells. M002 caused significant tumor cell death in 2D culture and 3D bioprinted tumor models. Finally, the PDXs displayed variable susceptibility to M002, with a more profound effect on high-risk neuroblastoma PDXs compared to low-risk PDX. These findings validate the importance of incorporating PDXs for preclinical testing of oncolytic viral therapeutics and showcase a novel technique, 3D bioprinting, to test therapies in PDXs. Collectively, our data indicate that oHSVs effectively target high-risk neuroblastoma, and support the advancement of this therapy to the clinical setting.
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- 2022
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20. Metastatic human hepatoblastoma cells exhibit enhanced tumorigenicity, invasiveness and a stem cell-like phenotype
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Raoud Marayati, Janet R. Julson, Laura V. Bownes, Colin H. Quinn, Sara C. Hutchins, Adele P. Williams, Hooper R. Markert, Andee M. Beierle, Jerry E. Stewart, Anita B. Hjelmeland, Elizabeth Mroczek-Musulman, and Elizabeth A. Beierle
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Hepatoblastoma ,Mice ,Phenotype ,Cell Line, Tumor ,Stem Cells ,Pediatrics, Perinatology and Child Health ,Liver Neoplasms ,Animals ,Humans ,Surgery ,General Medicine ,Article - Abstract
BACKGROUND/PURPOSE: Metastatic hepatoblastoma continues to pose a significant treatment challenge, primarily because the precise mechanisms involved in metastasis are not fully understood, making cell lines and preclinical models that depict the progression of disease and metastasis-related biology paramount. We aimed to generate and characterize a metastatic hepatoblastoma cell line to create a model for investigation of the molecular mechanisms associated with metastasis. MATERIALS/METHODS: Using a murine model of serial tail vein injections of the human hepatoblastoma HuH6 cell line, non-invasive bioluminescence imaging, and dissociation of metastatic pulmonary lesions, we successfully established and characterized the metastatic human hepatoblastoma cell line, HLM_3. RESULTS: The HLM_3 cells exhibited enhanced tumorigenicity and invasiveness, both in vitro and in vivo compared to the parent HuH6 cell line. Moreover, HLM_3 metastatic hepatoblastoma cells exhibited a stem cell-like phenotype and were more resistant to the standard chemotherapeutic cisplatin. CONCLUSION: This newly described metastatic hepatoblastoma cell line offers a novel tool to study mechanisms of tumor metastasis and evaluate new therapeutic strategies for metastatic hepatoblastoma.
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- 2022
21. Medical Downgrading, Self-Perception of Health, and Psychological Symptoms in the British Armed Forces
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Rona, R. J., Hooper, R., Greenberg, N., Jones, M., and Wessely, S.
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- 2006
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22. External validation of prognostic models predicting pre-eclampsia: individual participant data meta-analysis
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Snell, K, Allotey, J, Smuk, M, Hooper, R, Chan, C, Ahmed, A, Chappell, L, Von Dadelszen, P, Green, M, Kenny, L, Khalil, A, Khan, K, Mol, B, Myers, J, Poston, L, Thilaganathan, B, Staff, A, Smith, G, Ganzevoort, W, Laivuori, H, Odibo, A, Arenas Ramirez, J, Kingdom, J, Daskalakis, G, Farrar, D, Baschat, A, Seed, P, Prefumo, F, da Silva Costa, F, Groen, H, Audibert, F, Masse, J, Skrastad, R, Salvesen, K, Haavaldsen, C, Nagata, C, Rumbold, A, Heinonen, S, Askie, L, Smits, L, Vinter, C, Magnus, P, Eero, K, Villa, P, Jenum, A, Andersen, L, Norman, J, Ohkuchi, A, Eskild, A, Bhattacharya, S, Mcauliffe, F, Galindo, A, Herraiz, I, Carbillon, L, Klipstein-Grobusch, K, Yeo, S, Browne, J, Moons, K, Riley, R, Thangaratinam, S, Vergani, P, Snell K. I. E., Allotey J., Smuk M., Hooper R., Chan C., Ahmed A., Chappell L. C., Von Dadelszen P., Green M., Kenny L., Khalil A., Khan K. S., Mol B. W., Myers J., Poston L., Thilaganathan B., Staff A. C., Smith G. C. S., Ganzevoort W., Laivuori H., Odibo A. O., Arenas Ramirez J., Kingdom J., Daskalakis G., Farrar D., Baschat A. A., Seed P. T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R. B., Salvesen K. A., Haavaldsen C., Nagata C., Rumbold A. R., Heinonen S., Askie L. M., Smits L. J. M., Vinter C. A., Magnus P., Eero K., Villa P. M., Jenum A. K., Andersen L. B., Norman J. E., Ohkuchi A., Eskild A., Bhattacharya S., McAuliffe F. M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S. A., Browne J. L., Moons K. G. M., Riley R. D., Thangaratinam S., Vergani P., Snell, K, Allotey, J, Smuk, M, Hooper, R, Chan, C, Ahmed, A, Chappell, L, Von Dadelszen, P, Green, M, Kenny, L, Khalil, A, Khan, K, Mol, B, Myers, J, Poston, L, Thilaganathan, B, Staff, A, Smith, G, Ganzevoort, W, Laivuori, H, Odibo, A, Arenas Ramirez, J, Kingdom, J, Daskalakis, G, Farrar, D, Baschat, A, Seed, P, Prefumo, F, da Silva Costa, F, Groen, H, Audibert, F, Masse, J, Skrastad, R, Salvesen, K, Haavaldsen, C, Nagata, C, Rumbold, A, Heinonen, S, Askie, L, Smits, L, Vinter, C, Magnus, P, Eero, K, Villa, P, Jenum, A, Andersen, L, Norman, J, Ohkuchi, A, Eskild, A, Bhattacharya, S, Mcauliffe, F, Galindo, A, Herraiz, I, Carbillon, L, Klipstein-Grobusch, K, Yeo, S, Browne, J, Moons, K, Riley, R, Thangaratinam, S, Vergani, P, Snell K. I. E., Allotey J., Smuk M., Hooper R., Chan C., Ahmed A., Chappell L. C., Von Dadelszen P., Green M., Kenny L., Khalil A., Khan K. S., Mol B. W., Myers J., Poston L., Thilaganathan B., Staff A. C., Smith G. C. S., Ganzevoort W., Laivuori H., Odibo A. O., Arenas Ramirez J., Kingdom J., Daskalakis G., Farrar D., Baschat A. A., Seed P. T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R. B., Salvesen K. A., Haavaldsen C., Nagata C., Rumbold A. R., Heinonen S., Askie L. M., Smits L. J. M., Vinter C. A., Magnus P., Eero K., Villa P. M., Jenum A. K., Andersen L. B., Norman J. E., Ohkuchi A., Eskild A., Bhattacharya S., McAuliffe F. M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S. A., Browne J. L., Moons K. G. M., Riley R. D., Thangaratinam S., and Vergani P.
- Abstract
BACKGROUND: Pre-eclampsia is a leading cause of maternal and perinatal mortality and morbidity. Early identification of women at risk during pregnancy is required to plan management. Although there are many published prediction models for pre-eclampsia, few have been validated in external data. Our objective was to externally validate published prediction models for pre-eclampsia using individual participant data (IPD) from UK studies, to evaluate whether any of the models can accurately predict the condition when used within the UK healthcare setting. METHODS: IPD from 11 UK cohort studies (217,415 pregnant women) within the International Prediction of Pregnancy Complications (IPPIC) pre-eclampsia network contributed to external validation of published prediction models, identified by systematic review. Cohorts that measured all predictor variables in at least one of the identified models and reported pre-eclampsia as an outcome were included for validation. We reported the model predictive performance as discrimination (C-statistic), calibration (calibration plots, calibration slope, calibration-in-the-large), and net benefit. Performance measures were estimated separately in each available study and then, where possible, combined across studies in a random-effects meta-analysis. RESULTS: Of 131 published models, 67 provided the full model equation and 24 could be validated in 11 UK cohorts. Most of the models showed modest discrimination with summary C-statistics between 0.6 and 0.7. The calibration of the predicted compared to observed risk was generally poor for most models with observed calibration slopes less than 1, indicating that predictions were generally too extreme, although confidence intervals were wide. There was large between-study heterogeneity in each model's calibration-in-the-large, suggesting poor calibration of the predicted overall risk across populations. In a subset of models, the net benefit of using the models to inform clinical decisions
- Published
- 2020
23. Targeting High-Risk Neuroblastoma Patient-Derived Xenografts with Oncolytic Virotherapy
- Author
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Quinn, Colin H., primary, Beierle, Andee M., additional, Hutchins, Sara Claire, additional, Marayati, Raoud, additional, Bownes, Laura V., additional, Stewart, Jerry E., additional, Markert, Hooper R., additional, Erwin, Michael H., additional, Aye, Jamie M., additional, Yoon, Karina J., additional, Friedman, Gregory K., additional, Willey, Christopher D., additional, Markert, James M., additional, and Beierle, Elizabeth A., additional
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- 2022
- Full Text
- View/download PDF
24. The effects of focal adhesion kinase and platelet-derived growth factor receptor beta inhibition in a patient-derived xenograft model of primary and metastatic Wilms tumor
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Joshua C. Anderson, Caroline D. Goolsby, Kimberly Whelan, Elizabeth Mroczek-Musulman, Jamie M. Aye, Jerry E. Stewart, Raoud Marayati, Elizabeth A. Beierle, Evan F. Garner, Hooper R. Markert, Adele P. Williams, Colin H. Quinn, Christopher D. Willey, Karina J. Yoon, Mary G. Waldrop, Laura L. Stafman, and Smitha Mruthyunjayappa
- Subjects
0301 basic medicine ,Chemistry ,Wilms tumor ,Wilms' tumor ,medicine.disease ,3. Good health ,kinase inhibition ,Focal adhesion ,03 medical and health sciences ,030104 developmental biology ,0302 clinical medicine ,Oncology ,Growth factor receptor ,030220 oncology & carcinogenesis ,medicine ,Cancer research ,Platelet-Derived Growth Factor Receptor Beta ,Phosphorylation ,Immunohistochemistry ,Viability assay ,Tyrosine kinase ,Research Paper - Abstract
Aggressive therapies for patients with metastatic Wilms tumor (WT) with subsequent severe late effects warrant the search for novel therapies. The role of focal adhesion kinase (FAK), a non-receptor tyrosine kinase important in pediatric solid tumor development and progression, has not been examined in metastatic WT. Using a novel patient-derived xenograft (PDX) of a primary and matched, isogenic, metastatic WT, the hypothesis of the current study was that FAK would contribute to metastatic WT and small molecule inhibition would decrease tumor growth. Immunohistochemical staining, immunoblotting, cell viability and proliferation assays, cell cycle analysis, and cellular motility and attachment-independent growth assays were performed. FAK was present and phosphorylated in both WT PDXs and in the human samples from which they were derived. FAK inhibition decreased cellular survival, proliferation, and cell cycle progression in both PDXs but only significantly decreased migration, invasion, and attachment-independent growth in the primary WT PDX. Kinomic profiling revealed that platelet-derived growth factor receptor beta (PDGFRβ) may be affected by FAK inhibition in WT. Pharmacologic inhibition of FAK and PDGFRβ was synergistic in primary WT PDX cells. These findings broaden the knowledge of metastatic WT and support further investigations on the potential use of FAK and PDGFRβ inhibitors.
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- 2019
- Full Text
- View/download PDF
25. Downregulation of PDGFRß Signaling Overcomes Crizotinib Resistance in a TYRO3 and ALK Mutated Neuroendocrine-Like Tumor
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Andee M. Beierle, Colin H. Quinn, Elizabeth Mroczek-Musulman, Jamie M. Aye, David K. Crossman, Adele P. Williams, Hooper R. Markert, Jerry E. Stewart, Raoud Marayati, Karina J. Yoon, Laura V. Bownes, and Elizabeth A. Beierle
- Subjects
0301 basic medicine ,MAPK/ERK pathway ,Cancer Research ,medicine.medical_treatment ,Receptor expression ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,Crizotinib ,Neuroendocrine tumor ,In vivo ,medicine ,RC254-282 ,Original Research ,business.industry ,Sunitinib ,Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,Drug resistance ,Cancer research ,business ,Patient derived xenoline ,TYRO3 ,medicine.drug - Abstract
Highlights • Rare, high grade neuroendocrine-like pediatric tumor has TYRO3 and ALK mutations. • Crizotinib downregulates STAT3 and ERK1/2 signaling in tumor. • In vivo analysis demonstrated crizotinib resistance. • Crizotinib resistant cells have upregulation of PDGFRß signaling. • PDGFRß inhibition overrides resistance., Patient-derived xenografts provide significant advantages over long-term passage cell lines when investigating efficacy of treatments for solid tumors. Our laboratory encountered a high-grade, metastatic, neuroendocrine-like tumor from a pediatric patient that presented with a unique genetic profile. In particular, mutations in TYRO3 and ALK were identified. We established a human patient-derived xenoline (PDX) of this tumor for use in the current study. We investigated the effect of crizotinib, a chemotherapeutic known to effectively target both TYRO3 and ALK mutations. Crizotinib effectively decreased viability, proliferation, growth, and the metastatic properties of the PDX tumor through downregulation of STAT3 signaling, but expression of PDGFRß was increased. Sunitinib is a small molecule inhibitor of PDGFRß and was studied in this PDX independently and in combination with crizotinib. Sunitinib alone decreased viability, proliferation, and growth in vitro and decreased tumor growth in vivo. In combination, sunitinib was able to overcome potential crizotinib-induced resistance through downregulation of ERK 1/2 activity and PDGFRß receptor expression; consequently, tumor growth was significantly decreased both in vitro and in vivo. Through the use of the PDX, it was possible to identify crizotinib as a less effective therapeutic for this tumor and suggest that targeting PDGFRß would be more effective. These findings may translate to other solid tumors that present with the same genetic mutations.
- Published
- 2021
26. Two Corophioid Amphipods Commensal on Spider Crabs in Newfoundland
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Steele, D. H., Hooper, R. G., and Keats, D.
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- 1986
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27. X-Ray Topographic Investigations of Solid State Reactions. I. Changes in Surface and Bulk Substructure During Incipient Thermal Decomposition in Sodium Chlorate Monocrystals
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Begg, I. D., Halfpenny, P. J., Hooper, R. M., Narang, R. S., Roberts, K. J., and Sherwood, J. N.
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- 1983
28. Songbird Population Response to Silvicultural Practices in Central Appalachian Hardwoods
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Crawford, H. S., Hooper, R. G., and Titterington, R. W.
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- 1981
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29. Response of Eucalyptus Forest and Woodland to Four Fire Regimes at Munmarlary, Northern Territory, Australia
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Wilson, B. A. and Hooper, R. J.
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- 1988
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30. Locally Compact Subgroups of Metrizable Topological Abelian Groups
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Hooper, R. C.
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- 1976
- Full Text
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31. Challenges of sustainable broadcasting training in contemporary Pacific.
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Hooper, R. A.
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- 1998
32. Many Topological Abelian Groups Have Dense Divisible Subgroups
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Hooper, R. C.
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- 1969
- Full Text
- View/download PDF
33. Place-based household vouchers for locally supplied fruit and vegetables: the Fresh Street pilot cluster randomised controlled trial
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Relton, C., Blake, M. K., Bridge, G., Umney, D., Taylor, S. J. C., Adams, J., Mihaylova, B., Griffiths, C., Hooper, R., Phillips, R., Palmer, L., Gamston, A., and Williamson, K.
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- 2025
- Full Text
- View/download PDF
34. Use of a common food frequency questionnaire (FFQ) to assess dietary patterns and their relation to allergy and asthma in Europe: pilot study of the GA2LEN FFQ
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Garcia-Larsen, V, Luczynska, M, Kowalski, M L, Voutilainen, H, Ahlström, M, Haahtela, T, Toskala, E, Bockelbrink, A, Lee, H-H, Vassilopoulou, E, Papadopoulos, N G, Ramalho, R, Moreira, A, Delgado, L, Castel-Branco, M G, Calder, P C, Childs, C E, Bakolis, I, Hooper, R, and Burney, P G
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- 2011
- Full Text
- View/download PDF
35. Novel second-generation rexinoid induces growth arrest and reduces cancer cell stemness in human neuroblastoma patient-derived xenografts
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Venkatram R. Atigadda, Adele P. Williams, Elizabeth A. Beierle, Colin H. Quinn, Nikita Wadhwani, Jamie M. Aye, Raoud Marayati, Karina J. Yoon, Laura V. Bownes, Hooper R. Markert, and Jerry E. Stewart
- Subjects
Homeobox protein NANOG ,Retinoic acid ,Motility ,Article ,Flow cytometry ,03 medical and health sciences ,chemistry.chemical_compound ,Neuroblastoma ,0302 clinical medicine ,SOX2 ,Cancer stem cell ,030225 pediatrics ,Cell Line, Tumor ,medicine ,Humans ,Child ,Cell Proliferation ,medicine.diagnostic_test ,business.industry ,Cell Differentiation ,General Medicine ,medicine.disease ,chemistry ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Cancer cell ,Cancer research ,Neoplastic Stem Cells ,Heterografts ,Surgery ,Neoplasm Recurrence, Local ,business - Abstract
Introduction The poor therapeutic efficacy seen with current treatments for neuroblastoma may be attributed to stem cell-like cancer cells (SCLCCs), a subpopulation of cancer cells associated with poor prognosis and disease recurrence. Retinoic acid (RA) is a differentiating agent used as maintenance therapy for high-risk neuroblastoma but nearly half of children treated with RA relapse. We hypothesized that 6-Methyl-UAB30 (6-Me), a second-generation rexinoid recently developed with a favorable toxicity profile compared to RA, would reduce cancer cell stemness in human neuroblastoma patient-derived xenografts (PDXs). Methods Cells from three neuroblastoma PDXs were treated with 6-Me and proliferation, viability, motility, and cell-cycle progression were assessed. CD133 expression, sphere formation, and mRNA abundance of stemness and differentiation markers were evaluated using flow cytometry, in vitro extreme limiting dilution analysis, and real-time PCR, respectively. Results Treatment with 6-Me decreased proliferation, viability, and motility, and induced cell-cycle arrest and differentiation in all three neuroblastoma PDXs. In addition, 6-Me treatment led to decreased CD133 expression, decreased sphere-forming ability, and decreased mRNA abundance of Oct4, Nanog, and Sox2, indicating decreased cancer cell stemness. Conclusions 6-Me decreased oncogenicity and reduced cancer cell stemness of neuroblastoma PDXs, warranting further exploration of 6-Me as potential novel therapy for neuroblastoma.
- Published
- 2021
36. PIM447 inhibits oncogenesis and potentiates cisplatin effects in hepatoblastoma
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Nikita Wadhwani, Jamie M. Aye, Jerry E. Stewart, Laura V. Bownes, Elizabeth A. Beierle, Hooper R. Markert, Raoud Marayati, Colin H. Quinn, and Karina J. Yoon
- Subjects
Hepatoblastoma ,medicine.medical_treatment ,Motility ,Apoptosis ,medicine.disease_cause ,Article ,Targeted therapy ,03 medical and health sciences ,0302 clinical medicine ,030225 pediatrics ,Cell Line, Tumor ,medicine ,Humans ,Cell Proliferation ,Cisplatin ,Chemotherapy ,business.industry ,Liver Neoplasms ,General Medicine ,medicine.disease ,digestive system diseases ,Cell Transformation, Neoplastic ,Cell culture ,030220 oncology & carcinogenesis ,Pediatrics, Perinatology and Child Health ,Cancer research ,Surgery ,Carcinogenesis ,business ,medicine.drug - Abstract
Background Novel therapies are needed for patients with hepatoblastoma because of an increasing incidence of disease and poor prognosis for advanced, refractory, and recurrent disease. PIM kinases promote tumorigenesis in hepatoblastoma. A novel PIM inhibitor, PIM447, has shown promise in inhibiting oncogenesis in hematologic and lymphoid malignancies. We hypothesized that PIM inhibition with PIM447 would result in decreased tumorigenesis in hepatoblastoma. Methods The effects of PIM447 on hepatoblastoma viability, proliferation, motility, apoptosis, and tumor cell stemness were assessed in HuH6, a human hepatoblastoma cell line, and COA67, a human hepatoblastoma patient-derived xenograft. Results PIM447 significantly decreased the viability, proliferation, and motility of HuH6 and COA67 cells. Apoptosis significantly increased following PIM447 treatment. PIM447 had a significant impact on tumor cell stemness as evidenced by decreased expression of CD133 and reduced ability of HuH6 and COA67 cells to form tumorspheres. Furthermore, combining PIM447 with cisplatin resulted in a significant decrease in cell viability compared to either treatment alone. Conclusion We showed that PIM447 inhibits oncogenesis and potentiates the effects of cisplatin in hepatoblastoma and, therefore, warrants further investigation as a potential therapeutic agent for hepatoblastoma.
- Published
- 2021
37. PMU56 Health Economic Evaluation Alongside Stepped Wedge Trials: A Methodological Systematic Review and Recommendations of Appropriate Modelling Approaches
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Di, Tanna GL, primary, Lung, T., additional, Si, L., additional, and Hooper, R., additional
- Published
- 2021
- Full Text
- View/download PDF
38. Non-randomised studies should be considered for assessing surgical techniques in rectal prolapse : prospective cohort study
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Lee, M., Dimairo, M., Edwards, J., Hawkins, D., Hind, D., Knowles, C., Hooper, R., and Brown, S.
- Abstract
Objectives\ud \ud Randomised trials comparing surgical techniques for rectal prolapse are not always feasible. We assessed whether non‐randomised comparisons of those who have had surgery with those still waiting would be confounded baseline health status.\ud \ud \ud \ud Study Design and Setting\ud \ud \ud \ud Prospective cohort study in seven UK hospitals. Participants ≥18 years listed for surgical interventions of equivalent intensity for rectal prolapse. Participants were defined as short or long waiters (≤ or >18 weeks, respectively). Time on the waiting list was compared with baseline comorbidity (Charlson Comorbidity Index, CCI) and change from baseline in health status (EQ‐5D‐5L) at the time of surgery.\ud \ud \ud \ud Results\ud \ud 203 patients were analysed. Median (IQR) waiting time was 13.7 weeks (8.1, 20.4) varying across sites. Baseline comorbidity was not an important predictor of waiting time. Median CCI was 2 (0, 3) for short and 1 (0, 3) for long waiters. A change in waiting time by a week was associated with negligible improvement in EQ‐5D‐5L index of 0.001 (95%CI: ‐0.000 to 0.003, p =0.106).\ud \ud \ud \ud Conclusion\ud \ud Negligible change in patient reported health status while on waiting list and lack of effect of comorbidities in influencing waiting time supports the use of non‐randomised pre‐/post‐study to compare the effects of surgical interventions for rectal prolapse.
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- 2020
39. EZH2 inhibition decreases neuroblastoma proliferation and in vivo tumor growth
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Jerry E. Stewart, Elizabeth A. Beierle, Laura L. Stafman, Raoud Marayati, Laura V. Bownes, Elizabeth Mroczek-Musulman, Colin H. Quinn, Hooper R. Markert, Karina J. Yoon, Adele P. Williams, Nikita Wadhwani, and Jamie M. Aye
- Subjects
Cancer Treatment ,Apoptosis ,medicine.disease_cause ,Mice ,Neuroblastoma ,Cell Movement ,Breast Tumors ,Medicine and Health Sciences ,Enzyme Inhibitors ,Cultured Tumor Cells ,Gene knockdown ,Multidisciplinary ,Liver Diseases ,Prostate Cancer ,EZH2 ,Prostate Diseases ,Oncology ,Medicine ,Biological Cultures ,Research Article ,Cell Survival ,Blastoma ,Science ,Urology ,Motility ,macromolecular substances ,Gastroenterology and Hepatology ,Biology ,Research and Analysis Methods ,Malignant Tumors ,In vivo ,Cell Line, Tumor ,Breast Cancer ,Gastrointestinal Tumors ,medicine ,Animals ,Humans ,Enhancer of Zeste Homolog 2 Protein ,Cell Proliferation ,Cell growth ,Carcinoma ,Cancer ,Cancers and Neoplasms ,Hepatocellular Carcinoma ,Cell Cultures ,medicine.disease ,Xenograft Model Antitumor Assays ,Genitourinary Tract Tumors ,Cancer research ,Neuroblastoma Cells ,Carcinogenesis - Abstract
Investigation of the mechanisms responsible for aggressive neuroblastoma and its poor prognosis is critical to identify novel therapeutic targets and improve survival. Enhancer of Zeste Homolog 2 (EZH2) is known to play a key role in supporting the malignant phenotype in several cancer types and knockdown of EZH2 has been shown to decrease tumorigenesis in neuroblastoma cells. We hypothesized that the EZH2 inhibitor, GSK343, would affect cell proliferation and viability in human neuroblastoma. We utilized four long-term passage neuroblastoma cell lines and two patient-derived xenolines (PDX) to investigate the effects of the EZH2 inhibitor, GSK343, on viability, motility, stemness and in vivo tumor growth. Immunoblotting confirmed target knockdown. Treatment with GSK343 led to significantly decreased neuroblastoma cell viability, migration and invasion, and stemness. GSK343 treatment of mice bearing SK-N-BE(2) neuroblastoma tumors resulted in a significant decrease in tumor growth compared to vehicle-treated animals. GSK343 decreased viability, and motility in long-term passage neuroblastoma cell lines and decreased stemness in neuroblastoma PDX cells. These data demonstrate that further investigation into the mechanisms responsible for the anti-tumor effects seen with EZH2 inhibitors in neuroblastoma cells is warranted.
- Published
- 2020
40. Investigation of PP2A and Its Endogenous Inhibitors in Neuroblastoma Cell Survival and Tumor Growth
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Adele P. Williams, Jamie M. Aye, Laura L. Stafman, Alicia M. Waters, Evan F. Garner, Elizabeth A. Beierle, Hooper R. Markert, and Jerry E. Stewart
- Subjects
0301 basic medicine ,Cancer Research ,Original article ,Phosphatase ,Endogeny ,macromolecular substances ,environment and public health ,lcsh:RC254-282 ,03 medical and health sciences ,0302 clinical medicine ,Downregulation and upregulation ,In vivo ,Neuroblastoma ,medicine ,Viability assay ,Chemistry ,Activator (genetics) ,Protein phosphatase 2 ,medicine.disease ,lcsh:Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,3. Good health ,enzymes and coenzymes (carbohydrates) ,030104 developmental biology ,Oncology ,030220 oncology & carcinogenesis ,embryonic structures ,Cancer research - Abstract
High-risk neuroblastoma continues to carry a poor prognosis. Nearly 50% of these tumors relapse following extensive treatment regimens. Protein phosphatase 2A (PP2A), a tumor suppressor, has been shown to be downregulated in many human cancers via multiple mechanisms including upregulation of its endogenous inhibitors, I2PP2A or CIP2A. We hypothesized that inhibition of the endogenous PP2A inhibitors or activation of PP2A would decrease tumorigenicity in human neuroblastoma cells. Four human neuroblastoma cell lines were utilized. Expression of PP2A and its endogenous inhibitors I2PP2A and CIP2A was confirmed by immunoblotting. PP2A activation was measured via phosphatase activation assay. Multiple parallel methods including siRNA inhibition of the endogenous PP2A inhibitors and pharmacologic activation of PP2A were utilized. Cell viability, proliferation, migration, and invasion assays were performed. In vivo studies were utilized to determine the effects of PP2A activation on neuroblastoma tumor growth. Inhibition of the endogenous inhibitors of PP2A or pharmacologic activation of PP2A with the PP2A activator FTY720 led to decreased neuroblastoma cell viability, proliferation, migration, and invasion. Treatment of mice bearing SK-N-AS or SK-N-BE(2) neuroblastoma tumors with FTY720 resulted in a significant decrease in tumor growth compared to vehicle-treated animals. In conclusion, activation of PP2A may provide a novel therapeutic target for neuroblastoma.
- Published
- 2019
41. External validation of prognostic models predicting pre-eclampsia: individual participant data meta-analysis.
- Author
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Kingdom J., Poston L., Thilaganathan B., Staff A.C., Smith G.C.S., Ganzevoort W., Laivuori H., Odibo A.O., Arenas Ramirez J., Daskalakis G., Farrar D., Baschat A.A., Seed P.T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R.B., Salvesen K.A., Haavaldsen C., Nagata C., Rumbold A.R., Heinonen S., Askie L.M., Smits L.J.M., Vinter C.A., Magnus P., Eero K., Villa P.M., Jenum A.K., Andersen L.B., Norman J.E., Ohkuchi A., Eskild A., Bhattacharya S., McAuliffe F.M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S.A., Browne J.L., Moons K.G.M., Riley R.D., Thangaratinam S., Snell K.I.E., Allotey J., Smuk M., Hooper R., Chan C., Ahmed A., Chappell L.C., Von Dadelszen P., Green M., Kenny L., Khalil A., Khan K.S., Mol B.W., Myers J., Kingdom J., Poston L., Thilaganathan B., Staff A.C., Smith G.C.S., Ganzevoort W., Laivuori H., Odibo A.O., Arenas Ramirez J., Daskalakis G., Farrar D., Baschat A.A., Seed P.T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R.B., Salvesen K.A., Haavaldsen C., Nagata C., Rumbold A.R., Heinonen S., Askie L.M., Smits L.J.M., Vinter C.A., Magnus P., Eero K., Villa P.M., Jenum A.K., Andersen L.B., Norman J.E., Ohkuchi A., Eskild A., Bhattacharya S., McAuliffe F.M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S.A., Browne J.L., Moons K.G.M., Riley R.D., Thangaratinam S., Snell K.I.E., Allotey J., Smuk M., Hooper R., Chan C., Ahmed A., Chappell L.C., Von Dadelszen P., Green M., Kenny L., Khalil A., Khan K.S., Mol B.W., and Myers J.
- Abstract
BACKGROUND: Pre-eclampsia is a leading cause of maternal and perinatal mortality and morbidity. Early identification of women at risk during pregnancy is required to plan management. Although there are many published prediction models for pre-eclampsia, few have been validated in external data. Our objective was to externally validate published prediction models for pre-eclampsia using individual participant data (IPD) from UK studies, to evaluate whether any of the models can accurately predict the condition when used within the UK healthcare setting. METHOD(S): IPD from 11 UK cohort studies (217,415 pregnant women) within the International Prediction of Pregnancy Complications (IPPIC) pre-eclampsia network contributed to external validation of published prediction models, identified by systematic review. Cohorts that measured all predictor variables in at least one of the identified models and reported pre-eclampsia as an outcome were included for validation. We reported the model predictive performance as discrimination (C-statistic), calibration (calibration plots, calibration slope, calibration-in-the-large), and net benefit. Performance measures were estimated separately in each available study and then, where possible, combined across studies in a random-effects meta-analysis. RESULT(S): Of 131 published models, 67 provided the full model equation and 24 could be validated in 11 UK cohorts. Most of the models showed modest discrimination with summary C-statistics between 0.6 and 0.7. The calibration of the predicted compared to observed risk was generally poor for most models with observed calibration slopes less than 1, indicating that predictions were generally too extreme, although confidence intervals were wide. There was large between-study heterogeneity in each model's calibration-in-the-large, suggesting poor calibration of the predicted overall risk across populations. In a subset of models, the net benefit of using the models to inform clinical decis
- Published
- 2021
42. Validation and development of models using clinical, biochemical and ultrasound markers for predicting pre-eclampsia: An individual participant data meta-analysis.
- Author
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Allotey J., Smuk M., Hooper R., Chan C.L., Ahmed A., Chappell L.C., von Dadelszen P., Dodds J., Green M., Kenny L., Khalil A., Khan K.S., Mol B.W., Myers J., Poston L., Thilaganathan B., Eskild A., Bhattacharya S., McAuliffe F.M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S., Teede H.J., Browne J.L., Moons K.G.M., Riley R.D., Thangaratinam S., Snell K.I.E., Staff A.C., Smith G.C.S., Ganzevoort W., Laivuori H., Odibo A.O., Ramirez J.A., Kingdom J., Daskalakis G., Farrar D., Baschat A.A., Seed P.T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R.B., Salvesen K.A., Haavaldsen C., Nagata C., Rumbold A.R., Heinonen S., Askie L.M., Smits L.J.M., Vinter C.A., Magnus P.M., Eero K., Villa P.M., Jenum A.K., Andersen L.B., Norman J.E., Ohkuchi A., Allotey J., Smuk M., Hooper R., Chan C.L., Ahmed A., Chappell L.C., von Dadelszen P., Dodds J., Green M., Kenny L., Khalil A., Khan K.S., Mol B.W., Myers J., Poston L., Thilaganathan B., Eskild A., Bhattacharya S., McAuliffe F.M., Galindo A., Herraiz I., Carbillon L., Klipstein-Grobusch K., Yeo S., Teede H.J., Browne J.L., Moons K.G.M., Riley R.D., Thangaratinam S., Snell K.I.E., Staff A.C., Smith G.C.S., Ganzevoort W., Laivuori H., Odibo A.O., Ramirez J.A., Kingdom J., Daskalakis G., Farrar D., Baschat A.A., Seed P.T., Prefumo F., da Silva Costa F., Groen H., Audibert F., Masse J., Skrastad R.B., Salvesen K.A., Haavaldsen C., Nagata C., Rumbold A.R., Heinonen S., Askie L.M., Smits L.J.M., Vinter C.A., Magnus P.M., Eero K., Villa P.M., Jenum A.K., Andersen L.B., Norman J.E., and Ohkuchi A.
- Abstract
Background: Pre-eclampsia is a leading cause of maternal and perinatal mortality and morbidity. Early identification of women at risk is needed to plan management. Objective(s): To assess the performance of existing pre-eclampsia prediction models and to develop and validate models for pre-eclampsia using individual participant data meta-analysis. We also estimated the prognostic value of individual markers. Design(s): This was an individual participant data meta-analysis of cohort studies. Setting(s): Source data from secondary and tertiary care. Predictors: We identified predictors from systematic reviews, and prioritised for importance in an international survey. Primary outcomes: Early-onset (delivery at < 34 weeks' gestation), late-onset (delivery at >= 34 weeks' gestation) and any-onset pre-eclampsia. Analysis: We externally validated existing prediction models in UK cohorts and reported their performance in terms of discrimination and calibration.We developed and validated 12 new models based on clinical characteristics, clinical characteristics and biochemical markers, and clinical characteristics and ultrasound markers in the first and second trimesters. We summarised the data set-specific performance of each model using a random-effects meta-analysis. Discrimination was considered promising for C-statistics of >= 0.7, and calibration was considered good if the slope was near 1 and calibration-in-the-large was near 0. Heterogeneity was quantified using I2 and 2. A decision curve analysis was undertaken to determine the clinical utility (net benefit) of the models. We reported the unadjusted prognostic value of individual predictors for pre-eclampsia as odds ratios with 95% confidence and prediction intervals. Result(s): The International Prediction of Pregnancy Complications network comprised 78 studies (3,570,993 singleton pregnancies) identified from systematic reviews of tests to predict pre-eclampsia. Twenty-four of the 131 published prediction models c
- Published
- 2021
43. Runs of homozygosity in killer whale genomes provide a global record of demographic histories.
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Foote, AD, Hooper, R, Alexander, A, Baird, RW, Baker, CS, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, NJ, Durban, JW, Esteban, R, Excoffier, L, Martin, SLF, Forney, KA, Gerrodette, T, Gilbert, MTP, Guinet, C, Hanson, MB, Li, S, Martin, MD, Robertson, KM, Samarra, FIP, de Stephanis, R, Tavares, SB, Tixier, P, Totterdell, JA, Wade, P, Wolf, JBW, Fan, G, Zhang, Y, Morin, PA, Foote, AD, Hooper, R, Alexander, A, Baird, RW, Baker, CS, Ballance, L, Barlow, J, Brownlow, A, Collins, T, Constantine, R, Dalla Rosa, L, Davison, NJ, Durban, JW, Esteban, R, Excoffier, L, Martin, SLF, Forney, KA, Gerrodette, T, Gilbert, MTP, Guinet, C, Hanson, MB, Li, S, Martin, MD, Robertson, KM, Samarra, FIP, de Stephanis, R, Tavares, SB, Tixier, P, Totterdell, JA, Wade, P, Wolf, JBW, Fan, G, Zhang, Y, and Morin, PA
- Abstract
Runs of homozygosity (ROH) occur when offspring inherit haplotypes that are identical by descent from each parent. Length distributions of ROH are informative about population history; specifically, the probability of inbreeding mediated by mating system and/or population demography. Here, we investigated whether variation in killer whale (Orcinus orca) demographic history is reflected in genome-wide heterozygosity and ROH length distributions, using a global data set of 26 genomes representative of geographic and ecotypic variation in this species, and two F1 admixed individuals with Pacific-Atlantic parentage. We first reconstructed demographic history for each population as changes in effective population size through time using the pairwise sequential Markovian coalescent (PSMC) method. We found a subset of populations declined in effective population size during the Late Pleistocene, while others had more stable demography. Genomes inferred to have undergone ancestral declines in effective population size, were autozygous at hundreds of short ROH (<1 Mb), reflecting high background relatedness due to coalescence of haplotypes deep within the pedigree. In contrast, longer and therefore younger ROH (>1.5 Mb) were found in low latitude populations, and populations of known conservation concern. These include a Scottish killer whale, for which 37.8% of the autosomes were comprised of ROH >1.5 Mb in length. The fate of this population, in which only two adult males have been sighted in the past five years, and zero fecundity over the last two decades, may be inextricably linked to its demographic history and consequential inbreeding depression.
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- 2021
44. The Early Youth Engagement in first episode psychosis (EYE-2) study: pragmatic cluster randomised controlled trial of implementation, effectiveness and cost-effectiveness of a team-based motivational engagement intervention to improve engagement
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Greenwood, K, Webb, R, Gu, J, Fowler, D, de Visser, R, Bremner, S, Abramowicz, I, Perry, N, Clark, S, O’Donnell, A, Charlton, D, Jarvis, R, Garety, P, Nandha, S, Lennox, B, Johns, L, Rathod, S, Phiri, P, French, P, Law, H, Hodgekins, J, Painter, M, Treise, C, Plaistow, J, Irwin, F, Thompson, R, Mackay, T, May, CR, Healey, A, Hooper, R, Peters, E, Greenwood, K, Webb, R, Gu, J, Fowler, D, de Visser, R, Bremner, S, Abramowicz, I, Perry, N, Clark, S, O’Donnell, A, Charlton, D, Jarvis, R, Garety, P, Nandha, S, Lennox, B, Johns, L, Rathod, S, Phiri, P, French, P, Law, H, Hodgekins, J, Painter, M, Treise, C, Plaistow, J, Irwin, F, Thompson, R, Mackay, T, May, CR, Healey, A, Hooper, R, and Peters, E
- Abstract
Background: Early Intervention in Psychosis (EIP) services improve health outcomes for young people with psychosis in the medium–long term, but 25% of young people disengage in the first 12 months with costs to their mental health, families, society and the NHS. This study will evaluate the effectiveness, cost-effectiveness and implementation of a team-based motivational Early Youth Engagement (EYE-2) intervention. Method: The study design is a cluster randomised controlled trial (RCT) with economic evaluation, comparing the EYE-2 intervention + standardised EIP service to standardised EIP service alone, with randomisation at the team level. A process evaluation will evaluate the delivery of the intervention qualitatively and quantitatively across contexts. The setting is 20 EIP teams in 5 sites: Manchester, South London, East Anglia, Thames Valley and Hampshire. Participants are young people (14–35 years) with first episode psychosis, and EIP staff. The intervention is the team-based motivational engagement (EYE-2) intervention, delivered alongside standardised EIP services, and supported by additional training, website, booklets and social groups. The comparator is the standardised EIP service. Both interventions are delivered by EIP clinicians. The primary outcome is time to disengagement (time in days from date of allocation to care coordinator to date of last contact following refusal to engage with EIP service, or lack of response to EIP contact for a consecutive 3-month period). Secondary outcomes include mental and physical health, deaths, social and occupational function, recovery, satisfaction and service use at 6, 12, 18 and 24 months. A 12-month within-trial economic evaluation will investigate cost-effectiveness from a societal perspective and from an NHS perspective. Discussion: The trial will provide the first test of an engagement intervention in standardised care, with the potential for significant impact on the mental health and wellbeing of young
- Published
- 2021
45. The mechanical properties of recovered PMMA bone cement: A preliminary study
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Chaplin, R. P. S., Lee, A. J. C., Hooper, R. M., and Clarke, M.
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- 2006
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- View/download PDF
46. Assessment of wear on the cones of modular stainless steel Exeter hip stems
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Chaplin, R. P. S., Lee, A. J. C., and Hooper, R. M.
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- 2004
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47. Investigation of the mechanical performance of young glass-ionomer cement using dynamic mechanical analysis
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Eden, O. R., Foster, G. M., and Hooper, R. M.
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- 2003
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- View/download PDF
48. Neurodevelopmental delay in small babies at term: a systematic review
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Arcangeli, T., Thilaganathan, B., Hooper, R., Khan, K. S., and Bhide, A.
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- 2012
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49. The hepatocellular uptake of monosaccharides in conscious sheep
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Hooper, R. H.
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611 ,Human anatomy & human histology - Published
- 1975
50. Surgery for constipation: systematic review and practice recommendations
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Pilkington, S. A., Emmett, C., Knowles, C. H., Mason, J., Yiannakou, Y., Brown, S., Campbell, K., Chapman, M., Clarke, A., Cruickshank, N., Dixon, A., Grossi, U., Hooper, R., Horrocks, E., Lacy-Colson, J., Lindsey, I., Mercer-Jones, M., Miller, A., Pares, D., Smart, N., Stevens, N., Tincello, D., Telford, K., Vollebregt, P., and Williams, A.
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medicine.medical_specialty ,Constipation ,Lumbosacral Plexus ,Alternative medicine ,Electric Stimulation Therapy ,Poor quality ,03 medical and health sciences ,0302 clinical medicine ,Device removal ,medicine ,Humans ,neuromodulation ,sacral nerve stimulation ,slow transit constipation ,Chronic Disease ,Device Removal ,Electrodes, Implanted ,Patient Selection ,Practice Guidelines as Topic ,Treatment Outcome ,Electrodes ,Chronic constipation ,business.industry ,Gastroenterology ,Surgery ,Lumbosacral plexus ,Treatment success ,Sacral nerve stimulation ,030220 oncology & carcinogenesis ,Physical therapy ,030211 gastroenterology & hepatology ,Implanted ,medicine.symptom ,business ,RD ,RC - Abstract
Aim\ud \ud To assess the outcomes of sacral nerve stimulation in adults with chronic constipation.\ud Method\ud \ud Standardised methods and reporting of benefits and harms were used for all CapaCiTY reviews that closely adhered to PRISMA 2016 guidance. Main conclusions were presented as summary evidence statements with a summative Oxford Centre for Evidence-Based Medicine (2009) level.\ud \ud Results\ud \ud Seven articles were identified, providing data on outcomes in 375 patients. Length of procedures and length of stay was not reported. Data on harms were inconsistently reported and heterogeneous, making estimates of harm tentative and imprecise. Morbidity rates ranged between 13 and 34%, with overall device removal rate between 8 and 23%. Although inconsistently reported, pooled treatment success was typically 57–87% for patients receiving permanent implants, although there was significant variation between studies. Patient selection was inconsistently documented. No conclusions could be drawn regarding particular phenotypes that responded favourably or unfavourably to sacral nerve stimulation.\ud \ud Conclusion\ud \ud Evidence supporting sacral nerve stimulation is derived from poor quality studies. Three methodologically robust trials are have reported since this review and all have all urged greater caution.
- Published
- 2017
- Full Text
- View/download PDF
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