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The age, growth rates and length to weight relationships for the south-eastern Australian population of largehead hairtail (Trichiurus lepturus) were investigated for the first time. Age was estimated by counting annuli in sectioned sagittal otoliths, with a maximum age of 8 years estimated for males and females. We found no significant differences in the growth rates of males and females over the size (12–78 cm pre-anal length (PL)) and age (0–8 years) ranges sampled. However, females in our collection were larger on average than males, and all fish sampled >60 cm PL were female, suggesting that females may grow to larger sizes than males and that sampling of greater numbers of larger and older fish may be required in future. T. lepturus growth was described by the von Bertalanffy growth function parameters L∝ = 74.89 cm PL, K = 0.13yr−1 and t0 = −0.80 yr, with the L∝ being amongst the largest reported for the species. Growth was variable, with the sizes at any given age spanning up to 50 cm PL. Female T. lepturus increased in body weight relative to length faster than males, as has been reported in other populations. The length/weight relationship for the south-eastern Australian population was significantly different, with almost no overlap, from that reported for T. lepturus in the Arabian Sea. The substantial differences in growth rates, maximum sizes and body morphometrics of T. lepturus from south-eastern Australia in comparison to other populations globally are consistent with the hypotheses that it represents a distinct population, although investigations using additional population markers are required to verify this.

Knowledge of reproductive biology and life-history traits of populations exploited by fisheries is important for their sustainable management. We investigated the life-history traits of Trichiurus lepturus (largehead hairtail) in south-eastern Australia; a region of low exploitation for this otherwise heavily exploited circumglobal species, to investigate whether there were differences in the reproductive biology and life-history traits in the south-east Australian population compared with those in other regions. We also used histological sections to examine male and female gonads at a microscopic level. Trichiurus lepturus in south-eastern Australia had a greater maximum length (193 cm total length (TL)), matured at a larger length (108 cm TL at 50% mature) and had a spawning period (March to September, Austral winter) that was inconsistent with other regions. The overall sex ratio of 1:0.4 females: males was consistent with a female dominant sex ratio observed in other regions, particularly in larger length classes. However, females in the current study dominated samples from both estuarine and coastal habitats, as well as during the spawning and non-spawning periods, which is not consistent with the patterns found in other regions. Differences in south-eastern Australia may relate to limited fishing pressure, genetic variation, or differences in environmental factors that influence reproductive development, including temperature, trophic resources and habitat.

Earth’s biodiversity and human societies face pollution, overconsumption of natural resources, urbanization, demographic shifts, social and economic inequalities, and habitat loss, many of which are exacerbated by climate change. Here, we review links among climate, biodiversity, and society and develop a roadmap toward sustainability. These include limiting warming to 1.5°C and effectively conserving and restoring functional ecosystems on 30 to 50% of land, freshwater, and ocean “scapes.” We envision a mosaic of interconnected protected and shared spaces, including intensively used spaces, to strengthen self-sustaining biodiversity, the capacity of people and nature to adapt to and mitigate climate change, and nature’s contributions to people. Fostering interlinked human, ecosystem, and planetary health for a livable future urgently requires bold implementation of transformative policy interventions through interconnected institutions, governance, and social systems from local to global levels.

Copper membrane monooxygenases (CuMMOs) play critical roles in the global carbon and nitrogen cycles. Organisms harboring these enzymes perform the first, and rate limiting, step in aerobic oxidation of ammonia, methane, or other simple hydrocarbons. Within archaea, only organisms in the order Nitrososphaerales (Thaumarchaeota) encode CuMMOs, which function exclusively as ammonia monooxygenases. From grassland and hillslope soils and aquifer sediments, we identified 20 genomes from distinct archaeal species encoding divergent CuMMO sequences. These archaea are phylogenetically clustered in a previously unnamed Thermoplasmatota order, herein named the Ca. Angelarchaeales. The CuMMO proteins in Ca. Angelarchaeales are more similar in structure to those in Nitrososphaerales than those of bacteria, and contain all functional residues required for general monooxygenase activity. Ca. Angelarchaeales genomes are significantly enriched in blue copper proteins (BCPs) relative to sibling lineages, including plastocyanin-like electron carriers and divergent nitrite reductase-like (nirK) 2-domain cupredoxin proteins co-located with electron transport machinery. Ca. Angelarchaeales also encode significant capacity for peptide/amino acid uptake and degradation and share numerous electron transport mechanisms with the Nitrososphaerales. Ca. Angelarchaeales are detected at high relative abundance in some of the environments where their genomes originated from. While the exact substrate specificities of the novel CuMMOs identified here have yet to be determined, activity on ammonia is possible given their metabolic and ecological context. The identification of an archaeal CuMMO outside of the Nitrososphaerales significantly expands the known diversity of CuMMO enzymes in archaea and suggests previously unaccounted organisms contribute to critical global nitrogen and/or carbon cycling functions.

Purpose To explore and describe the extent and quality of Mental Health Literacy (MHL) resources, information and education currently available within the Australian Football League (AFL) Next Generation Academy (NGA) programs and identify limitations/gaps in existing MHL practices within these programs. Methods An exploratory mixed-method descriptive design was utilised in two phases. Phase One consisted of a researcher led MHL audit of publicly available data associated with each NGA program. Phase Two included a web-based open-ended questionnaire distributed to key NGA personnel and focused on mental health practices within the programs. Descriptive statistics were used to present Phase One data and thematic analysis was utilised in Phase Two. Results In Phase One, the total mean standardised score for resources on mental health, raising awareness on mental health and culture of support within the clubs were 47% (SD = 16, range 18–89), 51% (SD = 23, range 0–77) and 61% (SD = 27, range of 9–97). In Phase Two, eight participants responded to the questionnaire (44% response rate). Three themes emerged from the thematic analysis: 1) current initiatives and resources within the club; 2) training, education and support for staff; 3) the gender divide. Conclusion Mainstream mental health resources do exist within the AFL and there is some support within the professional league. However, these are not effectively tailored for youth elite athletes, nor have they been implemented into NGA programs despite the willingness of staff in supporting the mental health of these athletes.

Electrostatic charging affects the many-body spectrum of Andreev states, yet its influence on their microwave properties has not been elucidated. We developed a circuit quantum electrodynamics probe that, in addition to transition spectroscopy, measures the microwave susceptibility of different states of a semiconductor nanowire weak link with a single dominant (spin-degenerate) Andreev level. We found that the microwave susceptibility does not exhibit a particle-hole symmetry, which we qualitatively explain as an influence of Coulomb interaction. Moreover, our state-selective measurement reveals a large, p-phase shifted contribution to the response common to all many-body states which can be interpreted as arising from a phase-dependent continuum in the superconducting density of states.

Electrostatic charging affects the many-body spectrum of Andreev states, yet its influence on their microwave properties has not been elucidated. We developed a circuit quantum electrodynamics probe that, in addition to transition spectroscopy, measures the microwave susceptibility of different states of a semiconductor nanowire weak link with a single dominant (spin-degenerate) Andreev level. We found that the microwave susceptibility does not exhibit a particle-hole symmetry, which we qualitatively explain as an influence of Coulomb interaction. Moreover, our state-selective measurement reveals a large, ?-phase shifted contribution to the response common to all many-body states which can be interpreted as arising from a phase-dependent continuum in the superconducting density of states., BUS/Quantum Delft, QRD/Geresdi Lab

Several evidence-based programs to improve mental health literacy (MHL) are available; however, few have been adapted for youth athletes and sport-club settings. This systematic review aimed to investigate the impact of MHL initiatives, inclusive of education, resources and information, on the mental health of youth elite athletes. Studies were included if they examined a mental health program for young athletes (10–24 years) and reported MHL outcomes in either young people or their extended support network. A systematic search of the PubMed, Scopus and SPORTDiscus databases was conducted with no language or publication restrictions from July 2020 until September 2020. Thirteen studies were included for analysis in the review. Six studies included adolescent athletes, four studies included parents of adolescent athletes, six studies included coaching staff and three studies included female athletic populations. Five of these studies were qualitative and eight quantitative. The broad study search identified a lack of well designed, intervention-based research on MHL programs for youth elite athletes despite high demand for context specific programs. No literature that met eligibility criteria addressed MHL in youth female elite athletes exclusively. These findings limit dissemination and program transferability. This study also reinforces the influence parents and coaches have on the mental wellbeing of young elite athletes. To enhance the quality of MHL initiatives, programs developers should focus on the development of tailored resources for youth athletes with a gendered focus and incorporating opportunities for coach and parent engagement.

BACKGROUND: Biogeochemical exports from watersheds are modulated by the activity of microorganisms that function over micron scales. Here, we tested the hypothesis that meander-bound regions share a core microbiome and exhibit patterns of metabolic potential that broadly predict biogeochemical processes in floodplain soils along a river corridor. RESULTS: We intensively sampled the microbiomes of floodplain soils located in the upper, middle, and lower reaches of the East River, Colorado. Despite the very high microbial diversity and complexity of the soils, we reconstructed 248 quality draft genomes representative of subspecies. Approximately one third of these bacterial subspecies was detected across all three locations at similar abundance levels, and ~ 15% of species were detected in two consecutive years. Within the meander-bound floodplains, we did not detect systematic patterns of gene abundance based on sampling position relative to the river. However, across meanders, we identified a core floodplain microbiome that is enriched in capacities for aerobic respiration, aerobic CO oxidation, and thiosulfate oxidation with the formation of elemental sulfur. Given this, we conducted a transcriptomic analysis of the middle floodplain. In contrast to predictions made based on the prominence of gene inventories, the most highly transcribed genes were relatively rare amoCAB and nxrAB (for nitrification) genes, followed by genes involved in methanol and formate oxidation, and nitrogen and CO2 fixation. Within all three meanders, low soil organic carbon correlated with high activity of genes involved in methanol, formate, sulfide, hydrogen, and ammonia oxidation, nitrite oxidoreduction, and nitrate and nitrite reduction. Overall, the results emphasize the importance of sulfur, one-carbon and nitrogen compound metabolism in soils of the riparian corridor. CONCLUSIONS: The disparity between the scale of a microbial cell and the scale of a watershed currently limits the de

Gut microbiome succession affects infant development. However, it remains unclear what factors promote persistence of initial bacterial colonizers in the developing gut. Here, we perform strain-resolved analyses to compare gut colonization of preterm and full-term infants throughout the first year of life and evaluate associations between strain persistence and strain origin as well as genetic potential. Analysis of fecal metagenomes collected from 13 full-term and 9 preterm infants reveals that infants' initially distinct microbiomes converge by age 1 year. Approximately 11% of early colonizers, primarily Bacteroides and Bifidobacterium, persist during the first year of life, and those are more prevalent in full-term, compared with preterm infants. Examination of 17 mother-infant pairs reveals maternal gut strains are significantly more likely to persist in the infant gut than other strains. Enrichment in genes for surface adhesion, iron acquisition, and carbohydrate degradation may explain persistence of some strains through the first year of life.

Recent studies have demonstrated that drought leads to dramatic, highly conserved shifts in the root microbiome. At present, the molecular mechanisms underlying these responses remain largely uncharacterized. Here we employ genome-resolved metagenomics and comparative genomics to demonstrate that carbohydrate and secondary metabolite transport functionalities are overrepresented within drought-enriched taxa. These data also reveal that bacterial iron transport and metabolism functionality is highly correlated with drought enrichment. Using time-series root RNA-Seq data, we demonstrate that iron homeostasis within the root is impacted by drought stress, and that loss of a plant phytosiderophore iron transporter impacts microbial community composition, leading to significant increases in the drought-enriched lineage, Actinobacteria. Finally, we show that exogenous application of iron disrupts the drought-induced enrichment of Actinobacteria, as well as their improvement in host phenotype during drought stress. Collectively, our findings implicate iron metabolism in the root microbiome's response to drought and may inform efforts to improve plant drought tolerance to increase food security.

The Scientific Outcome was produced by participants in the first-ever IPCC-IPBES co-sponsored workshop which took place in December 2020.  This workshop is placed in the context of recent international agreements including the Paris Agreement, the Strategic Plan for Biodiversity 2011-2020 and ongoing preparation for the post-2020 global biodiversity framework, the Sendai Framework for Disaster Risk Reduction and the 2030 Agenda for Sustainable Development that converge on solving the dual crises of climate change and biodiversity loss as essential to support human well-being.The Scientific Outcome further develops and substantiates the conclusions of the Synopsis, summarizes the emerging state of knowledge involving climate change and biodiversity with the objective to inform decision making and highlight options for action, and to identify knowledge gaps to be filled by scientific research. The Scientific Outcome includes seven sections, the references outlining the evidence reviewed within those sections and the report glossary.

Bacteria isolated from soils are major sources of specialized metabolites, including antibiotics and other compounds with clinical value that likely shape interactions among microbial community members and impact biogeochemical cycles. Yet, isolated lineages represent a small fraction of all soil bacterial diversity. It remains unclear how the production of specialized metabolites varies across the phylogenetic diversity of bacterial species in soils and whether the genetic potential for production of these metabolites differs with soil depth and vegetation type within a geographic region. We sampled soils and saprolite from three sites in a northern California Critical Zone Observatory with various vegetation and bedrock characteristics and reconstructed 1,334 metagenome-assembled genomes containing diverse biosynthetic gene clusters (BGCs) for secondary metabolite production. We obtained genomes for prolific producers of secondary metabolites, including novel groups within the Actinobacteria, Chloroflexi, and candidate phylum "Candidatus Dormibacteraeota." Surprisingly, one genome of a candidate phyla radiation (CPR) bacterium coded for a ribosomally synthesized linear azole/azoline-containing peptide, a capacity we found in other publicly available CPR bacterial genomes. Overall, bacteria with higher biosynthetic potential were enriched in shallow soils and grassland soils, with patterns of abundance of BGC type varying by taxonomy.IMPORTANCE Microbes produce specialized compounds to compete or communicate with one another and their environment. Some of these compounds, such as antibiotics, are also useful in medicine and biotechnology. Historically, most antibiotics have come from soil bacteria which can be isolated and grown in the lab. Though the vast majority of soil bacteria cannot be isolated, we can extract their genetic information and search it for genes which produce these specialized compounds. These understudied soil bacteria offer a wealth of potenti

Longstanding questions relate to the existence of naturally distinct bacterial species and genetic approaches to distinguish them. Bacterial genomes in public databases form distinct groups, but these databases are subject to isolation and deposition biases. To avoid these biases, we compared 5,203 bacterial genomes from 1,457 environmental metagenomic samples to test for distinct clouds of diversity and evaluated metrics that could be used to define the species boundary. Bacterial genomes from the human gut, soil, and the ocean all exhibited gaps in whole-genome average nucleotide identities (ANI) near the previously suggested species threshold of 95% ANI. While genome-wide ratios of nonsynonymous and synonymous nucleotide differences (dN/dS) decrease until ANI values approach ∼98%, two methods for estimating homologous recombination approached zero at ∼95% ANI, supporting breakdown of recombination due to sequence divergence as a species-forming force. We evaluated 107 genome-based metrics for their ability to distinguish species when full genomes are not recovered. Full-length 16S rRNA genes were least useful, in part because they were underrecovered from metagenomes. However, many ribosomal proteins displayed both high metagenomic recoverability and species discrimination power. Taken together, our results verify the existence of sequence-discrete microbial species in metagenome-derived genomes and highlight the usefulness of ribosomal genes for gene-level species discrimination.IMPORTANCE There is controversy about whether bacterial diversity is clustered into distinct species groups or exists as a continuum. To address this issue, we analyzed bacterial genome databases and reports from several previous large-scale environment studies and identified clear discrete groups of species-level bacterial diversity in all cases. Genetic analysis further revealed that quasi-sexual reproduction via horizontal gene transfer is likely a key evolutionary force that maintain

Soil microbial diversity is often studied from the perspective of community composition, but less is known about genetic heterogeneity within species. The relative impacts of clonal interference, gene-specific selection, and recombination in many abundant but rarely cultivated soil microbes remain unknown. Here we track genome-wide population genetic variation for 19 highly abundant bacterial species sampled from across a grassland meadow. Genomic inferences about population structure are made using the millions of sequencing reads that are assembled de novo into consensus genomes from metagenomes, as each read pair describes a short genomic sequence from a cell in each population. Genomic nucleotide identity of assembled genomes was significantly associated with local geography for over half of the populations studied, and for a majority of populations within-sample nucleotide diversity could often be as high as meadow-wide nucleotide diversity. Genes involved in metabolite biosynthesis and extracellular transport were characterized by elevated nucleotide diversity in multiple species. Microbial populations displayed varying degrees of homologous recombination and recombinant variants were often detected at 7-36% of loci genome-wide. Within multiple populations we identified genes with unusually high spatial differentiation of alleles, fewer recombinant events, elevated ratios of nonsynonymous to synonymous variants, and lower nucleotide diversity, suggesting recent selective sweeps for gene variants. Taken together, these results indicate that recombination and gene-specific selection commonly shape genetic variation in several understudied soil bacterial lineages.

Readout and control of electrostatically confined electrons in semiconductors are key primitives of quantum information processing with solid-state spin qubits(1,2). In superconductor-semiconductor heterostructures, localized electronic modes known as Andreev levels result from confinement that is provided by the pair potential(3,4). Unlike electronic modes confined exclusively via electrostatic effects, Andreev levels carry supercurrent. Therefore, they naturally integrate with the techniques of circuit quantum electrodynamics (cQED) that have been developed in the field of superconducting qubits and used to detect pairs of quasiparticles that are trapped in Andreev levels(5-8). Here, we demonstrate single-shot cQED readout of the spin of an individual quasiparticle trapped in the Andreev levels of a semiconductor nanowire Josephson element. Owing to a spin-orbit interaction in the nanowire, this 'superconducting spin' directly determines the flow of supercurrent through the element. We harnessed this spin-dependent supercurrent to achieve both a zero-field spin splitting and a long-range interaction between the quasiparticle and a superconducting microwave resonator(9-13). Measurement of the resultant spin-dependent resonator frequency yielded quantum non-demolition spin readout with 92% fidelity in 1.9 mu s, which enabled us to monitor the quasiparticle spin in real time. These results pave the way for superconducting spin qubits that operate at zero magnetic field and for time-domain measurements of Majorana zero modes(9,10,12,14,15).A quasiparticle in Andreev levels was coupled to a superconducting microwave resonator and its spin was monitored in real time. This has potential applications in the readout of superconducting spin qubits and measurements of Majorana fermions.