5 results on '"D. L. Yan"'
Search Results
2. Both genes and lncRNAs can be used as biomarkers of prostate cancer by using high throughput sequencing data
- Author
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W-S, Cheng, H, Tao, E-P, Hu, S, Liu, H-R, Cai, X-L, Tao, L, Zhang, J-J, Mao, and D-L, Yan
- Subjects
Male ,Biomarkers, Tumor ,High-Throughput Nucleotide Sequencing ,Humans ,Prostatic Neoplasms ,RNA, Long Noncoding ,Transcriptome - Abstract
To investigate prostate cancer-related genes and lncRNAs by using a high throughput sequencing dataset.RNA-seq data were obtained from the sequencing read archive database, including both benign and malignant tumor samples. After aligning the RNA-seq reads to human genome reference, gene expression profile as well as lncRNA expression profile was obtained. Next, student's t-test was used to screen both the differentially expressed genes (DEGs) and lncRNAs (DELs) between benign and malignant samples. Finally, goseq was used to conduct the functional annotation of DEGs.A total of 7112 DEGs were screened, such as ZNF512B, UCKL1, STMN3, GMEB2, and PTK6. The top 10 enriched functions of DEGs were mainly related to organism development, including multi-cellular development, system development and anatomical structure development. Also, we discovered 26 differentially expressed lncRNAs.The analysis used in this study is reliable in screening prostate cancer markers including both genes and lncRNAs by using RNA-seq data, which provides new insight into the understanding of molecular mechanism of prostate cancer.
- Published
- 2014
3. THESPITZER-WISESURVEY OF THE ECLIPTIC POLES
- Author
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D. L. Yan, Martin Cohen, Peter Eisenhardt, Sean Carey, S. Wheelock, Thomas H. Jarrett, Chao-Wei Tsai, Jason Surace, Andrew Blain, A. K. Mainzer, D. Padgett, Dominic J. Benford, Frank J. Masci, K. A. Marsh, Daniel Stern, Roc M. Cutri, S. A. Stanford, C. Lonsdale, Sara Petty, Michael E. Ressler, Mike Skrutskie, and Edward L. Wright
- Subjects
Physics ,education.field_of_study ,Active galactic nucleus ,Population ,Ecliptic ,Astronomy ,Astronomy and Astrophysics ,Astrophysics::Cosmology and Extragalactic Astrophysics ,Astrophysics ,Galaxy ,Photometry (optics) ,Stars ,Spitzer Space Telescope ,Space and Planetary Science ,Astrophysics::Solar and Stellar Astrophysics ,Astrophysics::Earth and Planetary Astrophysics ,Source counts ,education ,Astrophysics::Galaxy Astrophysics - Abstract
We have carried out a survey of the north and south ecliptic poles, EP-N and EP-S, respectively, with the Spitzer Space Telescope and the Wide-field Infrared Survey Explorer (WISE). The primary objective was to cross-calibrate WISE with the Spitzer and Midcourse Space Experiment (MSX) photometric systems by developing a set of calibration stars that are common to these infrared missions. The ecliptic poles were continuous viewing zones for WISE due to its polar-crossing orbit, making these areas ideal for both absolute and internal calibrations. The Spitzer IRAC and MIPS imaging survey covers a complete area of 0.40 deg^2 for the EP-N and 1.28 deg^2 for the EP-S. WISE observed the whole sky in four mid-infrared bands, 3.4, 4.6, 12, and 22 μm, during its eight-month cryogenic mission, including several hundred ecliptic polar passages; here we report on the highest coverage depths achieved by WISE, an area of ~1.5 deg^2 for both poles. Located close to the center of the EP-N, the Sy-2 galaxy NGC 6552 conveniently functions as a standard calibrator to measure the red response of the 22 μm channel of WISE. Observations from Spitzer-IRAC/MIPS/IRS-LL and WISE show that the galaxy has a strong red color in the mid-infrared due to star-formation and the presence of an active galactic nucleus (AGN), while over a baseline >1 year the mid-IR photometry of NGC 6552 is shown to vary at a level less than 2%. Combining NGC 6552 with the standard calibrator stars, the achieved photometric accuracy of the WISE calibration, relative to the Spitzer and MSX systems, is 2.4%, 2.8%, 4.5%, and 5.7% for W1 (3.4 μm), W2 (4.6 μm), W3 (12 μm), and W4 (22 μm), respectively. The WISE photometry is internally stable to better than 0.1% over the cryogenic lifetime of the mission. The secondary objective of the Spitzer-WISE Survey was to explore the poles at greater flux-level depths, exploiting the higher angular resolution Spitzer observations and the exceptionally deep (in total coverage) WISE observations that potentially reach down to the confusion limit of the survey. The rich Spitzer and WISE data sets were used to study the Galactic and extragalactic populations through source counts, color-magnitude and color-color diagrams. As an example of what the data sets facilitate, we have separated stars from galaxies, delineated normal galaxies from power-law-dominated AGNs, and reported on the different fractions of extragalactic populations. In the EP-N, we find an AGN source density of ~260 deg^(–2) to a 12 μm depth of 115 μJy, representing 15% of the total extragalactic population to this depth, similar to what has been observed for low-luminosity AGNs in other fields.
- Published
- 2011
4. Characterization of human placental neuraminidases. Stability, substrate specificity and molecular weight
- Author
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Guy Beauregard, D McNamara, H V Nguyen, M. Bélisle, D L Yan, and Michel Potier
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Placenta ,Neuraminidase ,In Vitro Techniques ,Biochemistry ,Substrate Specificity ,Hydrolysis ,Drug Stability ,Pregnancy ,medicine ,Humans ,Centrifugation ,Molecular Biology ,chemistry.chemical_classification ,Chromatography ,biology ,Chemistry ,Elution ,Temperature ,Substrate (chemistry) ,Cell Biology ,Fetuin ,Isoenzymes ,Molecular Weight ,Kinetics ,medicine.anatomical_structure ,Enzyme ,Chromatography, Gel ,biology.protein ,Female ,Research Article - Abstract
1. At least two components of neuraminidase can be distinguished on the basis of thermolability and sedimentability by using the artificial fluorogenic substrate 4-methylumbelliferyl N-acetyl-alpha-D-neuraminate. 2. In crude homogenates, thermodenaturation at 25 degrees C showed a biphasic curve corresponding to component A (half-life, 21 min) and B (half-life, 85 min). The two components were partially resolved by centrifugation. A being soluble and B sedimentable. Both had similar pH-activity curves (pH optimum, 4.4), Km values (A, 0.10 mM; B, 0.06 mM) and molecular weight as determined by radiation inactivation (A, 67000; B, 63000). 3. The soluble A form was still aggregated or bound to membranous debris since almost all neuraminidase activity was eluted near or at the void volume of a Sephacryl S-300 column. 4. Both soluble and sedimentable fractions of placenta hydrolysed the GD1A ganglioside and N-acetyl-neuraminyl-D-lactose linearly for 12 h but no fetuin hydrolysis was detected. 5. The neuraminidase activity with the artificial fluorogenic substrate was inhibited by N-acetylneuraminyl-D-lactose but not by the GD1A ganglioside. These preliminary results suggest that there exist two closely related enzymes hydrolysing both the artificial substrate and N-acetylneuraminyl-D-lactose and a third one hydrolysing the GD1A ganglioside exclusively.
- Published
- 1982
5. Comparison of antioxidant responses to cadmium and lead in Bruguiera gymnorrhiza seedlings
- Author
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Y. M. Tao, Y. Z. Chen, T. Tan, X. C. Liu, D. L. Yang, and S. C. Liang
- Subjects
antioxidant enzymes ,catalase ,mangrove ,peroxidase ,superoxide dismutase ,Biology (General) ,QH301-705.5 ,Plant ecology ,QK900-989 - Abstract
Seedlings of mangrove plant Bruguiera gymnorrhiza cultured in sand with Hoagland's nutrient solution were treated with 1 to 30 mM Cd(NO3)2 or Pb(NO3)2 for 2 months. In all Cd/Pb treatments, the malondialdehyde content increased while the chlorophyll content declined. Peroxidase (POD) and superoxide dismutase (SOD) activities in roots increased at moderate Cd/Pb concentrations (1-10 mM), whereas decreased at higher concentrations (20-30 mM). Catalase (CAT) activity in roots was inhibited by 1-10 mM Cd but enhanced by 1-10 mM Pb. The activities of POD, SOD and CAT in leaves were less affected by Cd and Pb than in roots. A new SOD and three CAT isoenzymes were induced by Pb. In contrast, no additional SOD and CAT isoenzymes were induced by Cd.
- Published
- 2012
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