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1. Recovery of Missing Sensor Data by Reconstructing Time-varying Graph Signals

Author

Mondal, Anindya, Das, Mayukhmali, Chatterjee, Aditi, and Venkateswaran, Palaniandavar

Subjects
Electrical Engineering and Systems Science - Signal Processing, Computer Science - Artificial Intelligence, Computer Science - Networking and Internet Architecture
Abstract

Wireless sensor networks are among the most promising technologies of the current era because of their small size, lower cost, and ease of deployment. With the increasing number of wireless sensors, the probability of generating missing data also rises. This incomplete data could lead to disastrous consequences if used for decision-making. There is rich literature dealing with this problem. However, most approaches show performance degradation when a sizable amount of data is lost. Inspired by the emerging field of graph signal processing, this paper performs a new study of a Sobolev reconstruction algorithm in wireless sensor networks. Experimental comparisons on several publicly available datasets demonstrate that the algorithm surpasses multiple state-of-the-art techniques by a maximum margin of 54%. We further show that this algorithm consistently retrieves the missing data even during massive data loss situations., Comment: Five pages, two figures, 2022 30th European Signal Processing Conference (EUSIPCO). Published version available at: https://ieeexplore.ieee.org/document/9909940

Published
2022
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3. Loss of GdpP Function in Staphylococcus aureus Leads to β-Lactam Tolerance and Enhanced Evolution of β-Lactam Resistance

Author

Poon, Raymond, Basuino, Li, Satishkumar, Nidhi, Chatterjee, Aditi, Mukkayyan, Nagaraja, Buggeln, Emma, Huang, Liusheng, Nair, Vinod, Argudín, Maria A, Datta, Sandip K, Chambers, Henry F, and Chatterjee, Som S

Subjects
Vaccine Related, Antimicrobial Resistance, Biotechnology, Biodefense, Infectious Diseases, Prevention, Emerging Infectious Diseases, Development of treatments and therapeutic interventions, 5.1 Pharmaceuticals, Infection, Anti-Bacterial Agents, Bacterial Proteins, Drug Tolerance, Methicillin-Resistant Staphylococcus aureus, Microbial Sensitivity Tests, Staphylococcus aureus, beta-Lactam Resistance, beta-Lactams, GdpP, beta-lactams, cyclic-di-AMP, tolerance, Microbiology, Medical Microbiology, Pharmacology and Pharmaceutical Sciences
Abstract

Infections caused by Staphylococcus aureus are a leading cause of mortality. Treating infections caused by S. aureus is difficult due to resistance against most traditional antibiotics, including β-lactams. We previously reported the presence of mutations in gdpP among S. aureus strains that were obtained by serial passaging in β-lactam drugs. Similar mutations have recently been reported in natural S. aureus isolates that are either nonsusceptible or resistant to β-lactam antibiotics. gdpP codes for a phosphodiesterase that cleaves cyclic-di-AMP (CDA), a newly discovered second messenger. In this study, we sought to identify the role of gdpP in β-lactam resistance in S. aureus. Our results showed that gdpP-associated mutations caused loss of phosphodiesterase function, leading to increased CDA accumulation in the bacterial cytosol. Deletion of gdpP led to an enhanced ability of the bacteria to withstand a β-lactam challenge (2 to 3 log increase in bacterial CFU) by promoting tolerance without enhancing MICs of β-lactam antibiotics. Our results demonstrated that increased drug tolerance due to loss of GdpP function can provide a selective advantage in acquisition of high-level β-lactam resistance. Loss of GdpP function thus increases tolerance to β-lactams that can lead to its therapy failure and can permit β-lactam resistance to occur more readily.

Published
2022

6. Role of protein kinase N2 (PKN2) in cigarette smoke-mediated oncogenic transformation of oral cells

Author

Rajagopalan, Pavithra, Nanjappa, Vishalakshi, Patel, Krishna, Jain, Ankit P, Mangalaparthi, Kiran K, Patil, Arun H, Nair, Bipin, Mathur, Premendu P, Keshava Prasad, TS, Califano, Joseph A, Sidransky, David, Gowda, Harsha, and Chatterjee, Aditi

Subjects
Biological Sciences, Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Lung, Tobacco Smoke and Health, Dental/Oral and Craniofacial Disease, Prevention, Cancer, Rare Diseases, Lung Cancer, Tobacco, 2.1 Biological and endogenous factors, Aetiology, Orbitrap fusion, High-throughput, Carcinogenesis, Smoking, Cell adhesion, Biochemistry and Cell Biology, Clinical Sciences, Biochemistry and cell biology, Oncology and carcinogenesis
Abstract

Smoking is the leading cause of preventable death worldwide. Though cigarette smoke is an established cause of head and neck cancer (including oral cancer), molecular alterations associated with chronic cigarette smoke exposure are poorly studied. To understand the signaling alterations induced by chronic exposure to cigarette smoke, we developed a cell line model by exposing normal oral keratinocytes to cigarette smoke for a period of 12 months. Chronic exposure to cigarette smoke resulted in increased cellular proliferation and invasive ability of oral keratinocytes. Proteomic and phosphoproteomic analyses showed dysregulation of several proteins involved in cellular movement and cytoskeletal reorganization in smoke exposed cells. We observed overexpression and hyperphosphorylation of protein kinase N2 (PKN2) in smoke exposed cells as well as in a panel of head and neck cancer cell lines established from smokers. Silencing of PKN2 resulted in decreased colony formation, invasion and migration in both smoke exposed cells and head and neck cancer cell lines. Our results indicate that PKN2 plays an important role in oncogenic transformation of oral keratinocytes in response to cigarette smoke. The current study provides evidence that PKN2 can act as a potential therapeutic target in head and neck squamous cell carcinoma, especially in patients with a history of smoking.

Published
2018

7. Molecular alterations associated with chronic exposure to cigarette smoke and chewing tobacco in normal oral keratinocytes

Author

Rajagopalan, Pavithra, Patel, Krishna, Jain, Ankit P, Nanjappa, Vishalakshi, Datta, Keshava K, Subbannayya, Tejaswini, Mangalaparthi, Kiran K, Kumari, Anjali, Manoharan, Malini, Coral, Karunakaran, Murugan, Sakthivel, Nair, Bipin, Prasad, TS Keshava, Mathur, Premendu P, Gupta, Ravi, Gupta, Rohit, Khanna-Gupta, Arati, Califano, Joseph, Sidransky, David, Gowda, Harsha, and Chatterjee, Aditi

Subjects
Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Dental/Oral and Craniofacial Disease, Tobacco Smoke and Health, Tobacco, Prevention, Cancer, Aetiology, 2.1 Biological and endogenous factors, Good Health and Well Being, Biomarkers, Cell Transformation, Neoplastic, Environmental Exposure, Gene Expression Profiling, Humans, Keratinocytes, Mouth Mucosa, Phenotype, Proteome, Proteomics, Smoking, Tobacco Use, Transcriptome, Exome Sequencing, Orbitrap Fusion, high-throughput, carcinogenesis, smoking, chronic exposure, Oncology & Carcinogenesis, Biochemistry and cell biology, Oncology and carcinogenesis
Abstract

Tobacco usage is a known risk factor associated with development of oral cancer. It is mainly consumed in two different forms (smoking and chewing) that vary in their composition and methods of intake. Despite being the leading cause of oral cancer, molecular alterations induced by tobacco are poorly understood. We therefore sought to investigate the adverse effects of cigarette smoke/chewing tobacco exposure in oral keratinocytes (OKF6/TERT1). OKF6/TERT1 cells acquired oncogenic phenotype after treating with cigarette smoke/chewing tobacco for a period of 8 months. We employed whole exome sequencing (WES) and quantitative proteomics to investigate the molecular alterations in oral keratinocytes chronically exposed to smoke/ chewing tobacco. Exome sequencing revealed distinct mutational spectrum and copy number alterations in smoke/ chewing tobacco treated cells. We also observed differences in proteomic alterations. Proteins downstream of MAPK1 and EGFR were dysregulated in smoke and chewing tobacco exposed cells, respectively. This study can serve as a reference for fundamental damages on oral cells as a consequence of exposure to different forms of tobacco.

Published
2018

8. Identification of potential biomarkers of head and neck squamous cell carcinoma using iTRAQ based quantitative proteomic approach

Author

Babu, Niraj, Mohan, Sonali, Nanjappa, Vishalakshi, Chavan, Sandip, Advani, Jayshree, Khan, Aafaque Ahmed, Renuse, Santosh, Radhakrishnan, Aneesha, Prasad, TS Keshava, Kumar, Rekha V, Ray, Jay Gopal, Biswas, Manjusha, Thiyagarajan, Saravanan, Califano, Joseph A, Sidransky, David, Gowda, Harsha, and Chatterjee, Aditi

Subjects
Biomedical and Clinical Sciences, Oncology and Carcinogenesis, Cancer, Biotechnology, Rare Diseases, Dental/Oral and Craniofacial Disease, HNSCC, iTRAQ, Parallel reaction monitoring, Mass spectrometry, OKF6/TERT1
Abstract

Head and neck squamous cell carcinoma (HNSCC) is one of the most common cancers in India. Despite improvements in treatment strategy, the survival rates of HNSCC patients remain poor. Thus, it is necessary to identify biomarkers that can be used for early detection of disease. In this study, we employed iTRAQ-based quantitative mass spectrometry analysis to identify dysregulated proteins from a panel of head and neck squamous cell carcinoma (HNSCC) cell lines. We identified 2468 proteins, of which 496 proteins were found to be dysregulated in at least two out of three HNSCC cell lines compared to immortalized normal oral keratinocytes. We detected increased expression of replication protein A1 (RPA1) and heat shock protein family H (Hsp110) member 1 (HSPH1), in HNSCC cell lines compared to control. The differentially expressed proteins were further validated using parallel reaction monitoring (PRM) and western blot analysis in HNSCC cell lines. Immunohistochemistry-based validation using HNSCC tissue microarrays revealed overexpression of RPA1 and HSPH1 in 15.7% and 32.2% of the tested cases, respectively. Our study illustrates quantitative proteomics as a robust approach for identification of potential HNSCC biomarkers. The proteomic data has been submitted to ProteomeXchange Consortium (http://www.proteomecentral.proteomexchange.org) via the PRIDE public data repository accessible using the data identifier - PXD009241.

Published
2018

9. Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes.

Author

Bhat, Mohd Younis, Advani, Jayshree, Rajagopalan, Pavithra, Patel, Krishna, Nanjappa, Vishalakshi, Solanki, Hitendra S, Patil, Arun H, Bhat, Firdous A, Mathur, Premendu P, Nair, Bipin, Prasad, TS Keshava, Califano, Joseph A, Sidransky, David, Gowda, Harsha, and Chatterjee, Aditi

Subjects
Mouth Mucosa, Keratinocytes, Humans, Tobacco, Smokeless, MicroRNAs, Smoking, Computational Biology, Environmental Exposure, Gene Expression Regulation, Phenotype, Biomarkers, Tobacco, Smokeless
Abstract

Carcinogenic effect of tobacco in oral cancer is through chewing and/or smoking. Significant differences exist in development of oral cancer between tobacco users and non-users. However, molecular alterations induced by different forms of tobacco are yet to be fully elucidated. We developed cellular models of chronic exposure to chewing tobacco and cigarette smoke using immortalized oral keratinocytes. Chronic exposure to tobacco resulted in increased cell scattering and invasiveness in immortalized oral keratinocytes. miRNA sequencing using Illumina HiSeq 2500 resulted in the identification of 10 significantly dysregulated miRNAs (4 fold; p ≤ 0.05) in chewing tobacco treated cells and 6 in cigarette smoke exposed cells. We integrated this data with global proteomic data and identified 36 protein targets that showed inverse expression pattern in chewing tobacco treated cells and 16 protein targets that showed inverse expression in smoke exposed cells. In addition, we identified 6 novel miRNAs in chewing tobacco treated cells and 18 novel miRNAs in smoke exposed cells. Integrative analysis of dysregulated miRNAs and their targets indicates that signaling mechanisms leading to oncogenic transformation are distinct between both forms of tobacco. Our study demonstrates alterations in miRNA expression in oral cells in response to two frequently used forms of tobacco.

Published
2018

10. Molecular Basis of Cerebral Vasospasm: What Can We Learn from Transcriptome and Temporal Gene Expression Profiling in Intracranial Aneurysm?

Author

Kumar, Munish, primary, Sharma, Tanavi, additional, Patel, Krishna, additional, Chinnapparaj, Shobia, additional, Dixit, Ravi, additional, Gendle, Chandrashekhar, additional, Aggarwal, Ashish, additional, Takkar, Aastha, additional, Gupta, Tulika, additional, Singla, Navneet, additional, Pal, Arnab, additional, Salunke, Pravin, additional, Dhandapani, Sivashanmugam, additional, Chabra, Rajesh, additional, Chatterjee, Aditi, additional, Gowda, Harsha, additional, and Bhagat, Hemant, additional

Published
2024
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13. Phosphoproteomic analysis identifies CLK1 as a novel therapeutic target in gastric cancer

Author

Babu, Niraj, Pinto, Sneha M., Biswas, Manjusha, Subbannayya, Tejaswini, Rajappa, Manoj, Mohan, Sonali V., Advani, Jayshree, Rajagopalan, Pavithra, Sathe, Gajanan, Syed, Nazia, Radhakrishna, Vinod D., Muthusamy, Oliyarasi, Navani, Sanjay, Kumar, Rekha V., Gopisetty, Gopal, Rajkumar, Thangarajan, Radhakrishnan, Padhma, Thiyagarajan, Saravanan, Pandey, Akhilesh, Gowda, Harsha, Majumder, Pradip, and Chatterjee, Aditi

Published
2020
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19. PIM1 kinase promotes gallbladder cancer cell proliferation via inhibition of proline-rich Akt substrate of 40 kDa (PRAS40)

Author

Subbannayya, Tejaswini, Leal-Rojas, Pamela, Zhavoronkov, Alex, Ozerov, Ivan V., Korzinkin, Mikhail, Babu, Niraj, Radhakrishnan, Aneesha, Chavan, Sandip, Raja, Remya, Pinto, Sneha M., Patil, Arun H., Barbhuiya, Mustafa A., Kumar, Prashant, Guerrero-Preston, Rafael, Navani, Sanjay, Tiwari, Pramod K., Kumar, Rekha Vijay, Prasad, T. S. Keshava, Roa, Juan Carlos, Pandey, Akhilesh, Sidransky, David, Gowda, Harsha, Izumchenko, Evgeny, and Chatterjee, Aditi

Published
2019
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21. Integrated genomic analysis reveals mutated ELF3 as a potential gallbladder cancer vaccine candidate

Author

Pandey, Akhilesh, Stawiski, Eric W., Durinck, Steffen, Gowda, Harsha, Goldstein, Leonard D., Barbhuiya, Mustafa A., Schröder, Markus S., Sreenivasamurthy, Sreelakshmi K., Kim, Sun-Whe, Phalke, Sameer, Suryamohan, Kushal, Lee, Kayla, Chakraborty, Papia, Kode, Vasumathi, Shi, Xiaoshan, Chatterjee, Aditi, Datta, Keshava, Khan, Aafaque A., Subbannayya, Tejaswini, Wang, Jing, Chaudhuri, Subhra, Gupta, Sanjiv, Shrivastav, Braj Raj, Jaiswal, Bijay S., Poojary, Satish S., Bhunia, Shushruta, Garcia, Patricia, Bizama, Carolina, Rosa, Lorena, Kwon, Wooil, Kim, Hongbeom, Han, Youngmin, Yadav, Thakur Deen, Ramprasad, Vedam L., Chaudhuri, Amitabha, Modrusan, Zora, Roa, Juan Carlos, Tiwari, Pramod Kumar, Jang, Jin-Young, and Seshagiri, Somasekar

Published
2020
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26. Genetically encoded non-canonical amino acids reveal asynchronous dark reversion of chromophore, backbone, and side-chains in EL222

Author

Chaudhari, Aditya S., Chatterjee, Aditi, Domingos, Catarina A. O., Andrikopoulos, Prokopis C., Liu, Yingliang, Andersson, Inger, Schneider, Bohdan, Lorenz-Fonfria, Victor A., Fuertes, Gustavo, Chaudhari, Aditya S., Chatterjee, Aditi, Domingos, Catarina A. O., Andrikopoulos, Prokopis C., Liu, Yingliang, Andersson, Inger, Schneider, Bohdan, Lorenz-Fonfria, Victor A., and Fuertes, Gustavo

Abstract

Photoreceptors containing the light-oxygen-voltage (LOV) domain elicit biological responses upon excitation of their flavin mononucleotide (FMN) chromophore by blue light. The mechanism and kinetics of dark-state recovery are not well understood. Here we incorporated the non-canonical amino acid p-cyanophenylalanine (CNF) by genetic code expansion technology at 45 positions of the bacterial transcription factor EL222. Screening of light-induced changes in infrared (IR) absorption frequency, electric field and hydration of the nitrile groups identified residues CNF31 and CNF35 as reporters of monomer/oligomer and caged/decaged equilibria, respectively. Time-resolved multi-probe UV/visible and IR spectroscopy experiments of the lit-to-dark transition revealed four dynamical events. Predominantly, rearrangements around the A'alpha helix interface (CNF31 and CNF35) precede FMN-cysteinyl adduct scission, folding of alpha-helices (amide bands), and relaxation of residue CNF151. This study illustrates the importance of characterizing all parts of a protein and suggests a key role for the N-terminal A'alpha extension of the LOV domain in controlling EL222 photocycle length.

Published
2023
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29. Sub-Millisecond Photoinduced Dynamics of Free and EL222-Bound FMN by Stimulated Raman and Visible Absorption Spectroscopies

Author

Liu, Yingliang, primary, Chaudhari, Aditya S., additional, Chatterjee, Aditi, additional, Andrikopoulos, Prokopis C., additional, Picchiotti, Alessandra, additional, Rebarz, Mateusz, additional, Kloz, Miroslav, additional, Lorenz-Fonfria, Victor A., additional, Schneider, Bohdan, additional, and Fuertes, Gustavo, additional

Published
2023
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31. Signaling network map of the aryl hydrocarbon receptor

Author

Yelamanchi, Soujanya D., Solanki, Hitendra Singh, Radhakrishnan, Aneesha, Balakrishnan, Lavanya, Advani, Jayshree, Raja, Remya, Sahasrabuddhe, Nandini A., Mathur, Premendu Prakash, Dutta, Pinaki, Prasad, T. S. Keshava, Korbonits, Márta, Chatterjee, Aditi, Gowda, Harsha, and Mukherjee, Kanchan Kumar

Published
2016
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35. Abstract 3338: Concurrent treatment with Pim kinase inhibitor enhances efficacy of FLT3 inhibitors in AML with FLT3-ITD through GSK-3βactivation and GSK-3β-mediated enhanced proteasomal degradation of c-Myc and Mcl-1

Author

Lee, Jonelle, primary, Scarpa, Mario, additional, Chatterjee, Aditi, additional, Ali, Mooath Mustafa, additional, Singh, Prerna, additional, Kapoor, Shivani, additional, Trotta, Rossana, additional, and Baer, Maria, additional

Published
2022
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39. A draft map of the human proteome

Author

Kim, Min-Sik, Pinto, Sneha M., Getnet, Derese, Nirujogi, Raja Sekhar, Manda, Srikanth S., Chaerkady, Raghothama, Madugundu, Anil K., Kelkar, Dhanashree S., Isserlin, Ruth, Jain, Shobhit, Thomas, Joji K., Muthusamy, Babylakshmi, Leal-Rojas, Pamela, Kumar, Praveen, Sahasrabuddhe, Nandini A., Balakrishnan, Lavanya, Advani, Jayshree, George, Bijesh, Renuse, Santosh, Selvan, Lakshmi Dhevi N., Patil, Arun H., Nanjappa, Vishalakshi, Radhakrishnan, Aneesha, Prasad, Samarjeet, Subbannayya, Tejaswini, Raju, Rajesh, Kumar, Manish, Sreenivasamurthy, Sreelakshmi K., Marimuthu, Arivusudar, Sathe, Gajanan J., Chavan, Sandip, Datta, Keshava K., Subbannayya, Yashwanth, Sahu, Apeksha, Yelamanchi, Soujanya D., Jayaram, Savita, Rajagopalan, Pavithra, Sharma, Jyoti, Murthy, Krishna R., Syed, Nazia, Goel, Renu, Khan, Aafaque A., Ahmad, Sartaj, Dey, Gourav, Mudgal, Keshav, Chatterjee, Aditi, Huang, Tai-Chung, Zhong, Jun, Wu, Xinyan, Shaw, Patrick G., Freed, Donald, Zahari, Muhammad S., Mukherjee, Kanchan K., Shankar, Subramanian, Mahadevan, Anita, Lam, Henry, Mitchell, Christopher J., Shankar, Susarla Krishna, Satishchandra, Parthasarathy, Schroeder, John T., Sirdeshmukh, Ravi, Maitra, Anirban, Leach, Steven D., Drake, Charles G., Halushka, Marc K., Prasad, T. S. Keshava, Hruban, Ralph H., Kerr, Candace L., Bader, Gary D., Iacobuzio-Donahue, Christine A., Gowda, Harsha, and Pandey, Akhilesh

Published
2014
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41. Correction: Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor

Author

Solanki, Hitendra S., primary, Raja, Remya, additional, Zhavoronkov, Alex, additional, Ozerov, Ivan V., additional, Artemov, Artem V., additional, Advani, Jayshree, additional, Radhakrishnan, Aneesha, additional, Babu, Niraj, additional, Puttamallesh, Vinuth N., additional, Syed, Nazia, additional, Nanjappa, Vishalakshi, additional, Subbannayya, Tejaswini, additional, Sahasrabuddhe, Nandini A., additional, Patil, Arun H., additional, Prasad, T.S. Keshava, additional, Gaykalova, Daria, additional, Chang, Xiaofei, additional, Sathyendran, Rachana, additional, Prakash Mathur, Premendu, additional, Rangarajan, Annapoorni, additional, Sidransky, David, additional, Pandey, Akhilesh, additional, Izumchenko, Evgeny, additional, Gowda, Harsha, additional, and Chatterjee, Aditi, additional

Published
2021
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42. How to Achieve Therapeutic Response in Erlotinib-Resistant Head and Neck Squamous Cell Carcinoma? New Insights from Stable Isotope Labeling with Amino Acids in Cell Culture-Based Quantitative Tyrosine Phosphoproteomics

Author

Jain, Ankit P., primary, Radhakrishnan, Aneesha, additional, Pinto, Sneha, additional, Patel, Krishna, additional, Kumar, Manish, additional, Nanjappa, Vishalakshi, additional, Raja, Remya, additional, Keshava Prasad, Thottethodi Subrahmanya, additional, Mathur, Premendu P., additional, Sidransky, David, additional, Chatterjee, Aditi, additional, and Gowda, Harsha, additional

Published
2021
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43. Pim kinase inhibitor co-treatment decreases alternative non-homologous end-joining DNA repair and genomic instability induced by topoisomerase 2 inhibitors in cells with FLT3 internal tandem duplication

Author

Scarpa, Mario, primary, Kapoor, Shivani, additional, Tvedte, Eric S., additional, Doshi, Kshama A., additional, Zou, Ying S., additional, Singh, Prerna, additional, Lee, Jonelle K., additional, Chatterjee, Aditi, additional, Ali, Moaath K. Mustafa, additional, Bromley, Robin E., additional, Hotopp, Julie C. Dunning, additional, Rassool, Feyruz V., additional, and Baer, Maria R., additional

Published
2021
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44. Doublecortin-Like Kinase 1 (DCLK1) Is a Novel NOTCH Pathway Signaling Regulator in Head and Neck Squamous Cell Carcinoma

Author

Broner, Esther C., primary, Trujillo, Jonathan A., additional, Korzinkin, Michael, additional, Subbannayya, Tejaswini, additional, Agrawal, Nishant, additional, Ozerov, Ivan V., additional, Zhavoronkov, Alex, additional, Rooper, Lisa, additional, Kotlov, Nikita, additional, Shen, Le, additional, Pearson, Alexander T., additional, Rosenberg, Ari J., additional, Savage, Peter A., additional, Mishra, Vasudha, additional, Chatterjee, Aditi, additional, Sidransky, David, additional, and Izumchenko, Evgeny, additional

Published
2021
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45. A pathway map of prolactin signaling

Author

Radhakrishnan, Aneesha, Raju, Rajesh, Tuladhar, Nirvana, Subbannayya, Tejaswini, Thomas, Joji Kurian, Goel, Renu, Telikicherla, Deepthi, Palapetta, Shyam Mohan, Rahiman, B. Abdul, Venkatesh, Desai Dattatraya, Urmila, Kulkarni-Kale, Harsha, H. C., Mathur, Premendu Prakash, Prasad, T. S. Keshava, Pandey, Akhilesh, Shemanko, Carrie, and Chatterjee, Aditi

Published
2012
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46. Plasma Proteome Database as a resource for proteomics research: 2014 update

Author

Nanjappa, Vishalakshi, Thomas, Joji Kurian, Marimuthu, Arivusudar, Muthusamy, Babylakshmi, Radhakrishnan, Aneesha, Sharma, Rakesh, Ahmad Khan, Aafaque, Balakrishnan, Lavanya, Sahasrabuddhe, Nandini A., Kumar, Satwant, Jhaveri, Binit Nitinbhai, Sheth, Kaushal Vinaykumar, Kumar Khatana, Ramesh, Shaw, Patrick G., Srikanth, Srinivas Manda, Mathur, Premendu P., Shankar, Subramanian, Nagaraja, Dindagur, Christopher, Rita, Mathivanan, Suresh, Raju, Rajesh, Sirdeshmukh, Ravi, Chatterjee, Aditi, Simpson, Richard J., Harsha, H. C., Pandey, Akhilesh, and Prasad, Keshava T. S.

Published
2014
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48. Proteomic Alterations Associated with Oral Cancer Patients with Tobacco Using Habits

Author

Bhat, Firdous Ahmad, primary, Mohan, Sonali V., additional, Patil, Shankargouda, additional, Advani, Jayshree, additional, Bhat, Mohd Younis, additional, Patel, Krishna, additional, Mangalaparthi, Kiran K., additional, Datta, Keshava K., additional, Routray, Samapika, additional, Mohanty, Neeta, additional, Nair, Bipin, additional, Mandakulutur, S. Ganesh, additional, Pal, Arnab, additional, Sidransky, David, additional, Ray, Jay Gopal, additional, Gowda, Harsha, additional, and Chatterjee, Aditi, additional

Published
2021
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50. Saccharomyces cerevisiae polymerase [zeta] functions in mitochondria

Author

Zhang, Hengshan, Chatterjee, Aditi, and Singh, Keshav K.

Subjects
DNA polymerases -- Research, Mitochondria -- Research, Brewer's yeast -- Research, Biological sciences
Abstract

The MtArg8 reversion assay, which measures point mutation in mtDNA, indicates that in budding yeast Saccharomyces cerevisiae, DNA polymerase [zeta] and Rev1 proteins participate in the mitochondrial DNA mutagenesis. Supporting this evidence, both polymerase [zeta] and Rev1 p were found to be localized in the mitochondria. This is the first report demonstrating that the DNA polymerase [zeta] and Rev1 proteins function in the mitochondria.

Published
2006

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