10 results on '"Buchman G"'
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2. Differential incorporation of biotinylated nucleotides by terminal deoxynucleotidyl transferase
- Author
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Flickinger, J.L., primary, Gebeyehu, G., additional, Buchman, G., additional, and Rashtchian, A., additional
- Published
- 1992
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3. Structure, expression, and evolution of a gene encoding the precursor of nisin, a small protein antibiotic.
- Author
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Buchman, G W, Banerjee, S, and Hansen, J N
- Abstract
We have cloned and sequenced a gene (spaN) from Streptococcus lactis ATCC 11454 which encodes the peptide precursor of the small protein antibiotic nisin. The encoded precursor is 57 amino acids long, with a 23-residue leader region and a 34-residue structural region. The structural region contains serines, threonines, and cysteines at exactly the positions required to give mature nisin by a series of post-translational modifications involving dehydration of serines and threonines to dehydro forms, and cross-linking with cysteine residues. S1 mapping revealed a 267-nucleotide transcript of the nisin gene that is expressed during vegetative growth and stationary phase. It has a half-life of 7-10 min. The absence of an identifiable promoter or rho-independent terminator and the detection of two different 5′-ends of the transcript suggested it is a processing product from a larger RNA. This may represent a polycistronic mRNA which may also encode proteins involved in processing the nisin precursor peptide. Open reading frames were found in regions flanking the nisin gene. The one downstream had a ribosome binding site and appeared to be transcribed by read-through from the nisin gene. The one upstream had significant homology to a putative transposase from the Escherichia coli IS2 insertion element. Comparison of gene sequence homologies between nisin and the other lanthionine antibiotics, subtilin and epidermin, indicated that they all evolved from a common ancestor. Corresponding leader peptide sequences showed mediocre amino acid homology, but nearly perfect hydropathic homologies, suggesting a common function. It is proposed that this function includes recognition signals or other information required for post-translational processing.
- Published
- 1988
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4. Modification of membrane sulfhydryl groups in bacteriostatic action of nitrite
- Author
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Buchman, G W, primary and Hansen, J N, additional
- Published
- 1987
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5. Assembly and cloning of coding sequences for neurotrophic factors directly from genomic DNA using polymerase chain reaction and uracil DNA glycosylase
- Author
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Booth, P. M., Buchman, G. W., and Rashtchian, A.
- Published
- 1994
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6. Epitope recognition in HLA-DR3 transgenic mice immunized to TSH-R protein or peptides.
- Author
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Inaba H, Moise L, Martin W, De Groot AS, Desrosiers J, Tassone R, Buchman G, Akamizu T, and De Groot LJ
- Subjects
- Amino Acid Sequence, Animals, Antibodies immunology, Antibodies metabolism, Binding Sites genetics, Enzyme-Linked Immunosorbent Assay, Epitopes metabolism, Female, Graves Disease immunology, Graves Disease metabolism, Graves Disease therapy, HLA-DR3 Antigen genetics, HLA-DR3 Antigen metabolism, Humans, Immune Sera immunology, Immune Sera metabolism, Immunization, Male, Mice, Mice, Transgenic, Molecular Sequence Data, Mutation, Peptide Fragments metabolism, Protein Binding, Receptors, Antigen, T-Cell immunology, Receptors, Antigen, T-Cell metabolism, Receptors, Thyrotropin chemistry, Receptors, Thyrotropin genetics, Recombinant Proteins immunology, Recombinant Proteins metabolism, Spleen cytology, Spleen immunology, Spleen metabolism, Epitopes immunology, HLA-DR3 Antigen immunology, Peptide Fragments immunology, Receptors, Thyrotropin immunology
- Abstract
Development of Graves' disease is related to HLA-DR3. The extracellular domain (ECD) of human TSH receptor (hTSH-R) is a crucial antigen in Graves' disease. hTSH-R peptide 37 (amino acids 78-94) is an important immunogenic peptide in DR3 transgenic mice immunized to hTSH-R. This study examined the epitope recognition in DR3 transgenic mice immunized to hTSH-R protein and evaluated the ability of a mutant hTSH-R peptide to attenuate the immunogenicity of hTSH-R peptide 37. DR3 transgenic mice were immunized to recombinant hTSH-R-ECD protein or peptides. A mutant hTSH-R 37 peptide (ISRIYVSIDATLSQLES: 37 m), in which DR3 binding motif position 5 was mutated V>A, and position 8 Q>S, was synthesized. 37 m should bind to HLA-DR3 but not bind T cell receptors. DR3 transgenic mice were immunized to hTSH-R 37 and 37 m. Mice immunized to hTSH-R-ECD protein developed strong anti-hTSH-R antibody, and antisera reacted strongly with hTSH-R peptides 1-5 (20-94), 21 (258-277), 41 (283-297), 36 (376-389), and 31 (399-418). Strikingly, antisera raised to hTSH-R peptide 37 bound to hTSH-R peptides 1-7 (20-112), 10 (132-50), 33 (137-150), 41, 23 (286-305), 24 (301-320), 36, and 31 as well as to hTSH-R-ECD protein. Both antibody titers to hTSH-R 37 and reaction of splenocytes to hTSH-R 37 were significantly reduced in mice immunized to hTSH-R 37 plus 37 m, compared with mice immunized to hTSH-R 37 alone. The ability of immunization to a single peptide to induce antibodies that bind hTSH-R-ECD protein, and multiple unrelated peptides, is a unique observation. Immunogenic reaction to hTSH-R peptide 37 was partially suppressed by 37 m, and this may contribute to immunotherapy of autoimmune thyroid disease.
- Published
- 2013
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7. Structure of recombinant human carboxylesterase 1 isolated from whole cabbage looper larvae.
- Author
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Greenblatt HM, Otto TC, Kirkpatrick MG, Kovaleva E, Brown S, Buchman G, Cerasoli DM, and Sussman JL
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- Animals, Carboxylesterase genetics, Carboxylesterase isolation & purification, Carboxylesterase metabolism, Cell Line, Humans, Hydrolysis, Larva genetics, Larva metabolism, Models, Molecular, Moths genetics, Moths metabolism, Protein Structure, Quaternary, Protein Structure, Tertiary, Recombinant Proteins chemistry, Recombinant Proteins genetics, Recombinant Proteins isolation & purification, Recombinant Proteins metabolism, Carboxylesterase chemistry
- Abstract
The use of whole insect larvae as a source of recombinant proteins offers a more cost-effective method of producing large quantities of human proteins than conventional cell-culture approaches. Human carboxylesterase 1 has been produced in and isolated from whole Trichoplusia ni larvae. The recombinant protein was crystallized and its structure was solved to 2.2 resolution. The results indicate that the larvae-produced enzyme is essentially identical to that isolated from cultured Sf21 cells, supporting the use of this expression system to produce recombinant enzymes for crystallization studies., (© 2012 International Union of Crystallography)
- Published
- 2012
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8. Purification and characterization of functional human paraoxonase-1 expressed in Trichoplusia ni larvae.
- Author
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Otto TC, Kasten SA, Kovaleva E, Liu Z, Buchman G, Tolosa M, Davis D, Smith JR, Balcerzak R, Lenz DE, and Cerasoli DM
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- Animals, Aryldialkylphosphatase genetics, Aryldialkylphosphatase isolation & purification, Baculoviridae genetics, Baculoviridae physiology, Chlorpyrifos metabolism, Gene Expression, Humans, Hydrolysis, Kinetics, Larva genetics, Larva virology, Lepidoptera virology, Organothiophosphorus Compounds chemistry, Organothiophosphorus Compounds metabolism, Pesticides metabolism, Stereoisomerism, Substrate Specificity, Aryldialkylphosphatase biosynthesis, Aryldialkylphosphatase metabolism, Lepidoptera genetics
- Abstract
Human serum paraoxonase-1 (HuPON1) is difficult to either purify from plasma or functionally express in high yield from recombinant sources. Here, we describe the characterization of functional HuPON1 expressed and purified from Trichoplusia ni (T. ni) larvae infected with an orally active form of baculovirus. SDS-PAGE and anti-HuPON1 Western blot analyses yielded only three bands of approximately 41, 42, and 44 kDa. MALDI-TOF confirmed the identity of each of these bands as HuPON1 with greater than 95% confidence. These isoforms result from differential glycosylation of the enzyme as indicated by peptide mapping, mass analysis, and PNGase F deglycosylation experiments. Recombinant insect-produced HuPON1 hydrolyzed phenyl acetate, paraoxon, and the nerve agents GF, VX, and VR. The enzyme had dramatic stereoselectivity for the P+ isomers of VX and VR. T. ni larvae expressing HuPON1 were remarkably resistant to the pesticide chlorpyrifos. Together, these results demonstrate that the caterpillar of the T. ni moth can be used as an expression system to produce large quantities of functional recombinant HuPON1. Insect production of HuPON1 may provide a source for both in vitro enzymatic and crystallographic studies and in vivo stability and anti-nerve agent efficacy testing., (Published by Elsevier Ireland Ltd.)
- Published
- 2010
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9. Lung transplantation in patients with cystic fibrosis: the Israeli experience.
- Author
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Prais D, Raviv Y, Shitrit D, Yellin A, Sahar G, Bendayan D, Yahav Y, Efrati O, Reichart N, Blau H, Bakal I, Buchman G, Saute M, Vidne B, and Kramer MR
- Subjects
- Actuarial Analysis, Adolescent, Adult, Bronchiolitis Obliterans etiology, Cystic Fibrosis mortality, Cystic Fibrosis physiopathology, Female, Forced Expiratory Volume, Humans, Israel, Male, Medical Records, Retrospective Studies, Survival Analysis, Cystic Fibrosis surgery, Lung Transplantation adverse effects, Lung Transplantation mortality
- Abstract
Background: Lung transplantation is a well-established therapeutic option for end-stage lung disease in cystic fibrosis. Although it confers a clear survival advantage, outcome differs among centers according to local experience, patient selection, transplantation procedure, and postoperative care., Objectives: To evaluate the national Israeli experience with lung transplantation in patients with CF., Methods: We reviewed the medical charts of all CF patients who underwent lung transplantation between January 1996 and June 2005 at the two Israeli centers that perform this procedure., Results: Eighteen transplantations were performed in 17 patients. Mean patient age at transplantation was 25.3 +/- 9.1 years, and mean duration of follow-up in survivors (n=14) was 37.2 months (range 1-113 months). The actuarial survival rate was 88% at 1 year and 74% at 5 years. Pulmonary function, expressed as percent of predicted normal forced expiratory volume in 1 sec, improved from 22.4 +/- 8.1% to 76 +/- 16.8% at one year after transplantation. Bronchiolitis obliterans syndrome was diagnosed in 5 patients (29%), of whom 2 died and 2 are currently candidates for retransplantation. Median time to onset of BOS was 34.2 months (range 17-64 months)., Conclusion: In Israel, the early and intermediate-term results of lung transplantation for cystic fibrosis are encouraging. BOS remains a major complication that threatens long-term outcome.
- Published
- 2006
10. Selective RNA amplification: a novel method using dUMP-containing primers and uracil DNA glycosylase.
- Author
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Buchman GW, Schuster DM, and Rashtchian A
- Subjects
- Base Sequence, Chromatography, Gel, DNA Primers, DNA, Viral metabolism, DNA-Directed DNA Polymerase, Electrophoresis, Polyacrylamide Gel methods, Humans, Molecular Sequence Data, Oligonucleotide Probes, Papillomaviridae genetics, Papillomaviridae isolation & purification, RNA, Viral biosynthesis, RNA, Viral isolation & purification, RNA-Directed DNA Polymerase, Ribonuclease H, Taq Polymerase, Polymerase Chain Reaction methods, RNA analysis, RNA, Viral analysis
- Abstract
The application of PCR to a wide variety of biological problems and molecular techniques has gained wide acceptance. RNA-PCR, a technique in which first-strand cDNA synthesis is followed by PCR amplification, has enabled detection and characterization of rare transcripts. One problem confronting the researcher involves specific amplification of transcribed sequences in the presence of small amounts of genomic DNA of identical sequence. We describe a novel technique, selective RNA amplification, which will specifically amplify RNA sequences in a background of homologous DNA. The method involves first-strand cDNA synthesis from a specific dUMP-containing oligonucleotide that contains unique user-defined 5' sequence (adapter sequence) not found in the message of interest. RNA template is degraded using RNase H, which is specific for RNA/DNA hybrids. This is followed by second-strand synthesis using a gene-specific primer (GSP). The original adapter primer is digested with uracil DNA glycosylase (UDG) to prevent its participation in subsequent amplification. PCR is then performed using the GSP and a second primer corresponding to the unique adapter sequence. In this paper, we apply this method to the amplification of RNA derived from human papilloma virus sequences. Using Southern analysis, we demonstrate specific amplification of 10(5) molecules of an in vitro-transcribed RNA. Denatured DNA of identical sequence and concentration was not amplified using the RNA-specific method. The method could eliminate the need for stringent purification of RNA and enables amplification of rare messages from RNA preparations containing homologous DNA of identical sequence and size.
- Published
- 1993
- Full Text
- View/download PDF
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