2,544 results on '"Billi, A"'
Search Results
2. Cubic fourfolds with a symplectic automorphism of prime order
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Billi, Simone, Grossi, Annalisa, and Marquand, Lisa
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Mathematics - Algebraic Geometry ,14J50, 14J42 - Abstract
We classify the algebraic and transcendental lattices of a general cubic fourfold with a symplectic automorphism of prime order. We prove the rationality of two families of cubic fourfolds, and that they are not equivariantly rational with respect to their group of automorphisms. As an application, we classify the cohomological action of symplectic birational transformations of manifolds of OG10 type that are induced by prime order sympletic automorphisms of cubic fourfolds., Comment: 21 pages, comments welcome!
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- 2025
3. Rotational velocities of Blue Straggler Stars in the Globular Cluster M55
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Billi, Alex, Ferraro, Francesco R., Mucciarelli, Alessio, Lanzoni, Barbara, Cadelano, Mario, and Monaco, Lorenzo
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Astrophysics - Solar and Stellar Astrophysics - Abstract
By using high-resolution spectra acquired with FLAMES-GIRAFFE at the ESO/VLT, we measured radial and rotational velocities of 115 stars in the Galactic globular cluster M55. After field decontamination based on the radial velocity values, the final sample of member stars is composed of 32 blue straggler stars (BSSs) and 76 reference stars populating the red giant and horizontal branches of the cluster. In agreement with previous findings, the totality of red giant branch stars has negligible rotation ($<$ 10 km s$^{-1}$), and horizontal branch stars have rotational velocities of 40 km s$^{-1}$ at most. In contrast, the BSS rotational velocity distribution shows a long tail extending up to $\sim$ 200 km s$^{-1}$, with 15 BSSs (out of 32) spinning faster than 40 km s$^{-1}$. By defining the threshold for fast rotating BSSs at 40 km s$^{-1}$, this sets the percentage of these stars at 47 $\pm$ 14 %. Such a large value has never been found before in any globular clusters. It is roughly comparable to that measured in other loose systems ($\omega$ Centauri, M4, and NGC 3201) and significantly larger than that observed in high-density clusters (as 47 Tucanae, NGC 6397, NGC 6752, and M30). This evidence supports a scenario where recent BSS formation is occurring in low-density environments. We also find that the BSS rotational velocity tends to decrease for decreasing luminosity, as found for another loose cluster of the sample (namely, NGC 3201)., Comment: Accepted for publication in A&A
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- 2024
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4. On birational automorphisms of double EPW-cubes
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Billi, Simone, Muller, Stevell, and Wawak, Tomasz
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Mathematics - Algebraic Geometry ,14J42, 14J50, 14J60 - Abstract
We give a classification of finite groups of symplectic birational automorphisms on a manifold of K3^[3]-type with stable and stably saturated cohomological action. We describe the group of polarized automorphisms of a smooth double EPW-cube. Using this description, we exhibit examples of projective hyperkaehler manifolds of K3^[3]-type of maximal Picard rank with a symplectic action of a large group., Comment: 20 pages, 1 figure, 3 tables. Slight change in the statement of Theorem 0.2 and its proof, section 2 is partially rewritten, several general improvements in the text/tables/figure. Comments welcome!
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- 2024
5. Non-symplectic automorphisms of prime order of O'Grady's tenfolds and cubic fourfolds
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Billi, Simone and Grossi, Annalisa
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Mathematics - Algebraic Geometry - Abstract
We give a lattice-theoretic classification of non-symplectic automorphisms of prime order of irreducible holomorphic symplectic manifolds of OG10 type. We determine which automorphisms are induced by a non-symplectic automorphism of prime order of a cubic fourfold on the associated LSV manifolds, giving a geometric and lattice-theoretic description of the algebraic and transcendental lattices of the cubic fourfold. As an application we discuss the rationality conjecture for a general cubic fourfold with a non-symplectic automorphism of prime order., Comment: Minor improvements, comments are very welcome!
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- 2024
6. The anomaly of the CMB power with the latest Planck data
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Billi, M., Barreiro, R. B., and Martínez-González, E.
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
The lack of power anomaly is an unexpected feature observed at large angular scales in the CMB maps produced by the COBE, WMAP and Planck satellites. This signature, which consists in a missing of power with respect to that predicted by the LCDM model, might hint at a new cosmological phase before the standard inflationary era. The main point of this paper is taking into account the latest Planck polarisation data to investigate how the CMB polarisation improves the understanding of this feature. With this aim, we apply to the latest Planck data, both PR3 (2018) and PR4 (2020) releases, a new class of estimators capable of evaluating this anomaly by considering temperature and polarisation data both separately and in a jointly way. This is the first time that the PR4 dataset has been used to study this anomaly. To critically evaluate this feature, taking into account the residuals of known systematic effects present in the Planck datasets, we analyse the cleaned CMB maps using different combinations of sky masks, harmonic range and binning on the CMB multipoles. Our analysis shows that the estimator based only on temperature data confirms the presence of a lack of power with a lower-tail-probability (LTP), depending on the component separation method, $\leq 0.33\%$ and $\leq 1.76\%$ for PR3 and PR4, respectively. To our knowledge, the LTP$\leq 0.33\%$ for the PR3 dataset is the lowest one present in the literature obtained from Planck 2018 data, considering the Planck confidence mask. We find significant differences between these two datasets when polarisation is taken into account. Moreover, we also show that for the PR3 dataset the inclusion of the subdominant polarisation information provides estimates that are less likely accepted in a LCDM cosmological model than the only-temperature analysis over the entire harmonic-range considered.
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- 2023
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7. Large Language Models and Explainable Law: a Hybrid Methodology
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Billi, Marco, Parenti, Alessandro, Pisano, Giuseppe, and Sanchi, Marco
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Computer Science - Artificial Intelligence - Abstract
The paper advocates for LLMs to enhance the accessibility, usage and explainability of rule-based legal systems, contributing to a democratic and stakeholder-oriented view of legal technology. A methodology is developed to explore the potential use of LLMs for translating the explanations produced by rule-based systems, from high-level programming languages to natural language, allowing all users a fast, clear, and accessible interaction with such technologies. The study continues by building upon these explanations to empower laypeople with the ability to execute complex juridical tasks on their own, using a Chain of Prompts for the autonomous legal comparison of different rule-based inferences, applied to the same factual case.
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- 2023
8. Suppression of TCF4 promotes a ZC3H12A-mediated self-sustaining inflammatory feedback cycle involving IL-17RA/IL-17RE epidermal signaling.
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Jiang, Yanyun, Gruszka, Dennis, Zeng, Chang, Swindell, William, Gaskill, Christa, Sorensen, Christian, Brown, Whitney, Gangwar, Roopesh, Tsoi, Lam, Webster, Joshua, Sigurðardóttir, Sigrún, Sarkar, Mrinal, Uppala, Ranjitha, Kidder, Austin, Xing, Xianying, Plazyo, Olesya, Xing, Enze, Billi, Allison, Kahlenberg, J, Gudjonsson, Johann, Ward, Nicole, and Maverakis, Emanual
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Cytokines ,Dermatology ,Immunology ,Signal transduction ,Skin ,Animals ,Transcription Factor 4 ,Humans ,Interleukin-17 ,Mice ,Keratinocytes ,Ribonucleases ,Signal Transduction ,Receptors ,Interleukin-17 ,Inflammation ,Disease Models ,Animal ,Epidermis ,Dermatitis ,Feedback ,Physiological ,Gene Expression Regulation ,Adaptor Proteins ,Signal Transducing - Abstract
IL-17C is an epithelial cell-derived proinflammatory cytokine whose transcriptional regulation remains unclear. Analysis of the IL17C promoter region identified TCF4 as putative regulator, and siRNA knockdown of TCF4 in human keratinocytes (KCs) increased IL17C. IL-17C stimulation of KCs (along with IL-17A and TNF-α stimulation) decreased TCF4 and increased NFKBIZ and ZC3H12A expression in an IL-17RA/RE-dependent manner, thus creating a feedback loop. ZC3H12A (MCPIP1/Regnase-1), a transcriptional immune-response regulator, also increased following TCF4 siRNA knockdown, and siRNA knockdown of ZC3H12A decreased NFKBIZ, IL1B, IL36G, CCL20, and CXCL1, revealing a proinflammatory role for ZC3H12A. Examination of lesional skin from the KC-Tie2 inflammatory dermatitis mouse model identified decreases in TCF4 protein concomitant with increases in IL-17C and Zc3h12a that reversed following the genetic elimination of Il17c, Il17ra, and Il17re and improvement in the skin phenotype. Conversely, interference with Tcf4 in KC-Tie2 mouse skin increased Il17c and exacerbated the inflammatory skin phenotype. Together, these findings identify a role for TCF4 in the negative regulation of IL-17C, which, alone and with TNF-α and IL-17A, feed back to decrease TCF4 in an IL-17RA/RE-dependent manner. This loop is further amplified by IL-17C-TCF4 autocrine regulation of ZC3H12A and IL-17C regulation of NFKBIZ to promote self-sustaining skin inflammation.
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- 2024
9. HERC6 regulates STING activity in a sex-biased manner through modulation of LATS2/VGLL3 Hippo signaling.
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Uppala, Ranjitha, Sarkar, Mrinal, Young, Kelly, Ma, Feiyang, Vemulapalli, Pritika, Wasikowski, Rachael, Plazyo, Olesya, Swindell, William, Maverakis, Emanual, Gharaee-Kermani, Mehrnaz, Billi, Allison, Tsoi, Lam, Kahlenberg, J, and Gudjonsson, Johann
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Bioinformatics ,Cell biology ,Molecular biology ,Omics - Abstract
Interferon (IFN) activity exhibits a gender bias in human skin, skewed toward females. We show that HERC6, an IFN-induced E3 ubiquitin ligase, is induced in human keratinocytes through the epidermal type I IFN; IFN-κ. HERC6 knockdown in human keratinocytes results in enhanced induction of interferon-stimulated genes (ISGs) upon treatment with a double-stranded (ds) DNA STING activator cGAMP but not in response to the RNA-sensing TLR3 agonist. Keratinocytes lacking HERC6 exhibit sustained STING-TBK1 signaling following cGAMP stimulation through modulation of LATS2 and TBK1 activity, unmasking more robust ISG responses in female keratinocytes. This enhanced female-biased immune response with loss of HERC6 depends on VGLL3, a regulator of type I IFN signature. These data identify HERC6 as a previously unrecognized negative regulator of ISG expression specific to dsDNA sensing and establish it as a regulator of female-biased immune responses through modulation of STING signaling.
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- 2024
10. Single-cell sequencing reveals Hippo signaling as a driver of fibrosis in hidradenitis suppurativa.
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van Straalen, Kelsey, Ma, Feiyang, Tsou, Pei-Suen, Plazyo, Olesya, Gharaee-Kermani, Mehrnaz, Calbet, Marta, Xing, Xianying, Sarkar, Mrinal, Uppala, Ranjitha, Harms, Paul, Wasikowski, Rachael, Nahlawi, Lina, Nakamura, Mio, Eshaq, Milad, Wang, Cong, Dobry, Craig, Kozlow, Jeffrey, Cherry-Bukowiec, Jill, Brodie, William, Wolk, Kerstin, Uluçkan, Özge, Mattichak, Megan, Sabat, Robert, Kahlenberg, J, Billi, Allison, Tsoi, Lam, Gudjonsson, Johann, Modlin, Robert, Pellegrini, Matteo, and Maverakis, Emanual
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Cytokines ,Dermatology ,Fibrosis ,Inflammation ,Skin ,Humans ,Hidradenitis Suppurativa ,Hippo Signaling Pathway ,Fibrosis - Abstract
Hidradenitis suppurativa (HS) is a chronic inflammatory disease characterized by abscesses, nodules, dissecting/draining tunnels, and extensive fibrosis. Here, we integrate single-cell RNA sequencing, spatial transcriptomics, and immunostaining to provide an unprecedented view of the pathogenesis of chronic HS, characterizing the main cellular players and defining their interactions. We found a striking layering of the chronic HS infiltrate and identified the contribution of 2 fibroblast subtypes (SFRP4+ and CXCL13+) in orchestrating this compartmentalized immune response. We further demonstrated the central role of the Hippo pathway in promoting extensive fibrosis in HS and provided preclinical evidence that the profibrotic fibroblast response in HS can be modulated through inhibition of this pathway. These data provide insights into key aspects of HS pathogenesis with broad therapeutic implications.
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- 2024
11. BioMoon: a concept for a mission to advance space life sciences and astrobiology on the Moon
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Cockell, Charles S., Green, David A., Caplin, Nicol, Grenouilleau, Jessica, McDonald, Francesca E., Calvaruso, Marco, Billi, Daniela, Cullen, David C., Davey, Matthew P., De Micco, Veronica, Elsaesser, Andreas, Etheridge, Timothy, Gläßer, Christine, Hellweg, Christine E., Ilea, Crina S., Lecocq, Antoine, Leys, Natalie, Martin-Torres, Javier, Nazarious, Miracle, Pacelli, Claudia, Przybyla, Cyrille, Rabbow, Elke, Brown, Kate Robson, Soria-Salinas, Alvaro, Szewczyk, Nathaniel, Tinganelli, Walter, Tranfield, Erin M., de Vera, Jean-Pierre, and Verseux, Cyprien
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- 2024
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12. Seismic slip channeling along the East Anatolian Fault illuminates long-term supercycle behavior
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Billi, Andrea, Corbi, Fabio, Cuffaro, Marco, Orecchio, Barbara, Palano, Mimmo, Presti, Debora, and Totaro, Cristina
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- 2024
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13. Systems-based identification of the Hippo pathway for promoting fibrotic mesenchymal differentiation in systemic sclerosis
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Ma, Feiyang, Tsou, Pei-Suen, Gharaee-Kermani, Mehrnaz, Plazyo, Olesya, Xing, Xianying, Kirma, Joseph, Wasikowski, Rachael, Hile, Grace A., Harms, Paul W., Jiang, Yanyun, Xing, Enze, Nakamura, Mio, Ochocki, Danielle, Brodie, William D., Pillai, Shiv, Maverakis, Emanual, Pellegrini, Matteo, Modlin, Robert L., Varga, John, Tsoi, Lam C., Lafyatis, Robert, Kahlenberg, J. Michelle, Billi, Allison C., Khanna, Dinesh, and Gudjonsson, Johann E.
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- 2024
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14. Object Detection Approach Using YOLOv5 For Plant Species Identification
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Billi Clinton, Amperawan Amperawan, and Tresna Dewi
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ai (artificial intelligence) ,deep learning ,yolo (you only look once) ,visual slam ,Telecommunication ,TK5101-6720 ,Electronics ,TK7800-8360 - Abstract
In the modern era of agriculture and horticulture, biodiversity conservation requires plant species identification skills, and automatic detection is a challenging and interesting task. However, many factors often make some people mistaken in recognizing plant species that have unique and varied visual characteristics, making manual identification difficult. This problem requires an effective and accurate model for identifying plant species. So this research aims to produce a model to identify plant species that are effective and have a high level of accuracy. This research offers the use of the YOLOv5 algorithm method. The training process with epoch 200 and 53 minutes with a total of 1,220 images. Based on the results of the model performance test, the mAP value was 85.73%, precision 98.27%, and recall 94.36%. During testing, the model can identify plant species accurately on single objects and multiple objects. The results of this research show that the proposed method is successful in identifying plant species accurately.
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- 2024
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15. Fast rotating Blue Straggler Stars in the Globular Cluster NGC3201
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Billi, Alex, Ferraro, Francesco R., Mucciarelli, Alessio, Lanzoni, Barbara, Cadelano, Mario, Monaco, Lorenzo, Mateo, Mario, Bailey III, John I., Reiter, Megan, and Olszewski, Edward W.
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
We used high resolution spectra acquired at the Magellan Telescope to measure radial and rotational velocities of approximately 200 stars in the Galactic globular cluster NGC 3201. The surveyed sample includes Blue Stragglers Stars (BSSs) and reference stars in different evolutionary stages (main sequence turn-off, sub-giant, red giant and asymptotic giant branches). The average radial velocity value ($\langle V_r\rangle = 494.5 \pm 0.5$ km s$^{-1}$) confirms a large systemic velocity for this cluster and was used to distinguish 33 residual field interlopers. The final sample of member stars counts 67 BSSs and 114 reference stars. Similarly to what is found in other clusters, the totality of the reference stars has negligible rotation ($<20$ km s$^{-1}$), while the BSS rotational velocity distribution shows a long tail extending up to $\sim 200$ km s$^{-1}$, with 19 BSSs (out of 67) spinning faster than 40 km s$^{-1}$. This sets the percentage of fast rotating BSSs to $\sim 28\%$. Such a percentage is roughly comparable to that measured in other loose systems ($\omega$ Centauri, M4 and M55) and significantly larger than that measured in high-density clusters (as 47 Tucanae, NGC 6397, NGC 6752 and M30). This evidence supports a scenario where recent BSS formation (mainly from the evolution of binary systems) is occurring in low-density environments. We also find that the BSS rotational velocity tends to decrease for decreasing luminosity and surface temperature, similarly to what is observed in main sequence stars. Hence, further investigations are needed to understand the impact of BSS internal structure on the observed rotational velocities., Comment: Accepted for pubblication in ApJ: 14 pages, 10 figures
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- 2023
16. Single-cell profiling of prurigo nodularis demonstrates immune-stromal crosstalk driving profibrotic responses and reversal with nemolizumab.
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Ma, Feiyang, Gharaee-Kermani, Mehrnaz, Tsoi, Lam, Plazyo, Olesya, Chaskar, Prasad, Harms, Paul, Patrick, Matthew, Xing, Xianying, Hile, Grace, Piketty, Christophe, Lazzari, Anne, Van Delm, Wouter, Maverakis, Emanual, Nakamura, Mio, Modlin, Robert, Kahlenberg, J, Billi, Allison, Julia, Valerie, Krishnaswamy, Jayendra, and Gudjonsson, Johann
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Prurigo nodularis ,fibrosis ,inflammation ,nemolizumab ,single-cell RNA-sequencing ,spatial-sequencing ,Humans ,Prurigo ,Dermatitis ,Atopic ,Skin ,Chronic Disease ,RNA ,Pruritus - Abstract
BACKGROUND: Prurigo nodularis (PN) is a chronic neuroimmune skin disease characterized by bilaterally distributed pruritic hyperkeratotic nodules on extremities and trunk. Neuroimmune dysregulation and chronic scratching are believed to both induce and maintain the characteristic lesions. OBJECTIVES: This study sought to provide a comprehensive view of the molecular pathogenesis of PN at the single-cell level to identify and outline key pathologic processes and the cell types involved. Features that distinguish PN skin from the skin of patients with atopic dermatitis were of particular interest. We further aimed to determine the impact of the IL31RA antagonist, nemolizumab, and its specificity at the single-cell level. METHODS: Single-cell RNA-sequencing of skin from 15 healthy donors and nonlesional and lesional skin from 6 patients each with PN and atopic dermatitis, combined with spatial-sequencing using the 10x Visium platform. Integration with bulk RNA-sequencing data from patients treated with nemolizumab. RESULTS: This study demonstrates that PN is an inflammatory skin disease characterized by both keratinocyte proliferation and activation of profibrotic responses. This study also demonstrates that the COL11A1+ fibroblast subset is a major contributor to fibrosis and is predominantly found in the papillary dermis of PN skin. Activation of fibrotic responses is the main distinguishing feature between PN and atopic dermatitis skin. This study further shows the broad effect of nemolizumab on PN cell types, with a prominent effect driving COL11A1+ fibroblast and keratinocyte responses toward normal. CONCLUSIONS: This study provides a high-resolution characterization of the cell types and cellular processes activated in PN skin, establishing PN as a chronic fibrotic inflammatory skin disease. It further demonstrates the broad effect of nemolizumab on pathological processes in PN skin.
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- 2024
17. Fast rotating Blue Stragglers prefer loose clusters
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Ferraro, Francesco R., Mucciarelli, Alessio, Lanzoni, Barbara, Pallanca, Cristina, Cadelano, Mario, Billi, Alex, Sills, Alison, Vesperini, Enrico, Dalessandro, Emanuele, Beccari, Giacomo, Monaco, Lorenzo, and Mateo, Mario
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Astrophysics - Solar and Stellar Astrophysics ,Astrophysics - Astrophysics of Galaxies - Abstract
Blue stragglers are anomalously luminous core hydrogen-burning stars formed through mass-transfer in binary/triple systems and stellar collisions. Their physical and evolutionary properties are largely unknown and unconstrained. Here we analyze 320 high-resolution spectra of blue stragglers collected in eight galactic globular clusters with different structural characteristics and show evidence that the fraction of fast rotating blue stragglers (with rotational velocities larger than 40 km/s) increases for decreasing central density of the host system. This trend suggests that fast spinning blue stragglers prefer low-density environments and promises to open an unexplored route towards understanding the evolutionary processes of these stars. Since large rotation rates are expected in the early stages of both formation channels, our results provide direct evidence for recent blue straggler formation activity in low-density environments and put strong constraints on the timescale of the collisional blue straggler slow-down processes., Comment: Published in Nature Communications
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- 2023
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18. Sentiment Analysis on Shopee Product Reviews Using IndoBERT
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Suhardi Aras, Muhammad Yusuf, Reinhard Yohanis Ruimassa, Elli Agustinus Billi Wambrauw, and Elsa Bura Pala'langan
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marketplace, shopee, review, nlp, indobert ,Mathematics ,QA1-939 ,Electronic computers. Computer science ,QA75.5-76.95 - Abstract
A marketplace is a place in cyberspace where there are commercial activities between buyers and sellers. Products offered from the marketplace have reviews to review. Shopee is the most visited marketplace by people and offers various products. Product reviews can provide benefits for other consumers in assessing the products offered. By utilizing NLP technology in particular, this study can classify positive sentiment and negative sentiment in product review data. The IndoBERT model is a model that can be used in NLP technology by utilizing the relationship between each input and output element as well as the weights to be calculated simultaneously. By utilizing this technology, sentiment analysis on Shopee product reviews provides maximum accuracy until 93% with different training conditions. This provide that IndoBERT model can show that the performance of the indoBERT model in this research is very good.
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- 2024
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19. Shared Genetic Risk Factors for Multiple Sclerosis/Psoriasis Suggest Involvement of Interleukin-17 and Janus Kinase-Signal Transducers and Activators of Transcription Signaling.
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Patrick, Matthew, Nair, Rajan, He, Kevin, Stuart, Philip, Billi, Allison, Zhou, Xiang, Gudjonsson, Johann, Oksenberg, Jorge, Elder, James, and Tsoi, Lam
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Humans ,Diabetes Mellitus ,Type 2 ,Genome-Wide Association Study ,Interleukin-17 ,Mendelian Randomization Analysis ,Multiple Sclerosis ,Polymorphism ,Single Nucleotide ,Psoriasis ,Risk Factors ,Janus Kinases ,STAT Transcription Factors - Abstract
OBJECTIVE: Psoriasis and multiple sclerosis (MS) are complex immune diseases that are mediated by T cells and share multiple comorbidities. Previous studies have suggested psoriatic patients are at higher risk of MS; however, causal relationships between the two conditions remain unclear. Through epidemiology and genetics, we provide a comprehensive understanding of the relationship, and share molecular factors between psoriasis and MS. METHODS: We used logistic regression, trans-disease meta-analysis and Mendelian randomization. Medical claims data were included from 30 million patients, including 141,544 with MS and 742,919 with psoriasis. We used genome-wide association study summary statistics from 11,024 psoriatic, 14,802 MS cases, and 43,039 controls for trans-disease meta-analysis, with additional summary statistics from 5 million individuals for Mendelian randomization. RESULTS: Psoriatic patients have a significantly higher risk of MS (4,637 patients with both diseases; odds ratio [OR] 1.07, p = 1.2 × 10-5 ) after controlling for potential confounders. Using inverse variance and equally weighted trans-disease meta-analysis, we revealed >20 shared and opposing (direction of effect) genetic loci outside the major histocompatibility complex that showed significant genetic colocalization (in COLOC and COLOC-SuSiE v5.1.0). Co-expression analysis of genes from these loci further identified distinct clusters that were enriched among pathways for interleukin-17/tumor necrosis factor-α (OR >39, p
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- 2023
20. Tracing a Mantle Component in Both Paleo and Modern Fluids Along Seismogenic Faults of Southern Italy
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Filippo Zummo, Fabrizio Agosta, Antonio M. Álvarez‐Valero, Andrea Billi, Dario Buttitta, Antonio Caracausi, Gabriele Carnevale, Barbara Marchesini, and Michele Paternoster
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calcite veins ,fluid inclusions ,noble gas ,fault‐fluid interactions ,Earth degassing ,Geophysics. Cosmic physics ,QC801-809 ,Geology ,QE1-996.5 - Abstract
Abstract Aiming at understanding the source of the fluids that mineralizing within seismically active fault zones, we investigate the noble gas isotopes (i.e., helium (He), neon (Ne), and argon (Ar)) in the fluid inclusions (FIs) trapped in the calcite veins sampled along high‐angle fault zones of the Contursi hydrothermal basin, southern Italy. The latter basin lies in close vicinity of the MW = 6.9, 1980 Irpinia earthquake and exposes numerous fault scarps dissecting Mesozoic shallow‐water carbonates. The analyses of noble gases (He, Ne, Ar) are conducted to identify the origin of the volatiles circulating along the faults at the time of calcite precipitation. Then, outcomes of this discussions are compared with currently outgassing of deep‐sourced CO2 coupled to mantle‐derived He in that area, whose output is larger than those from some volcanic areas worldwide. The results indicate that He in FIs is dominated by a crustal radiogenic component (4He), and by an up to 20% of a mantle‐derived component (3He), with a highest isotopic signature of 1.38 Ra. This value is consistent with the highest percentage of mantle‐derived He associated to high‐flux CO2 gas emission in the investigated area (1.41 Ra). We propose that the variability of the He isotopic signature measured in primary FIs can result from early trapping of fluid inclusions or post trapping processes and seismic activity that modify the pristine He isotopic signature (i.e., derived from the crust and/or mantle) in groundwater along the faults during periods of background seismicity. Such investigations are fundamental to understand fluid migration in fault systems and the role of fluids in processes of earthquake nucleation.
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- 2024
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21. Single cell and spatial sequencing define processes by which keratinocytes and fibroblasts amplify inflammatory responses in psoriasis.
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Ma, Feiyang, Plazyo, Olesya, Billi, Allison C, Tsoi, Lam C, Xing, Xianying, Wasikowski, Rachael, Gharaee-Kermani, Mehrnaz, Hile, Grace, Jiang, Yanyun, Harms, Paul W, Xing, Enze, Kirma, Joseph, Xi, Jingyue, Hsu, Jer-En, Sarkar, Mrinal K, Chung, Yutein, Di Domizio, Jeremy, Gilliet, Michel, Ward, Nicole L, Maverakis, Emanual, Klechevsky, Eynav, Voorhees, John J, Elder, James T, Lee, Jun Hee, Kahlenberg, J Michelle, Pellegrini, Matteo, Modlin, Robert L, and Gudjonsson, Johann E
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Fibroblasts ,Keratinocytes ,Skin ,Humans ,Psoriasis ,Epidermal Cells ,Clinical Research ,Rare Diseases ,Autoimmune Disease ,2.1 Biological and endogenous factors ,Aetiology ,Inflammatory and immune system - Abstract
The immunopathogenesis of psoriasis, a common chronic inflammatory disease of the skin, is incompletely understood. Here we demonstrate, using a combination of single cell and spatial RNA sequencing, IL-36 dependent amplification of IL-17A and TNF inflammatory responses in the absence of neutrophil proteases, which primarily occur within the supraspinous layer of the psoriatic epidermis. We further show that a subset of SFRP2+ fibroblasts in psoriasis contribute to amplification of the immune network through transition to a pro-inflammatory state. The SFRP2+ fibroblast communication network involves production of CCL13, CCL19 and CXCL12, connected by ligand-receptor interactions to other spatially proximate cell types: CCR2+ myeloid cells, CCR7+ LAMP3+ dendritic cells, and CXCR4 expressed on both CD8+ Tc17 cells and keratinocytes, respectively. The SFRP2+ fibroblasts also express cathepsin S, further amplifying inflammatory responses by activating IL-36G in keratinocytes. These data provide an in-depth view of psoriasis pathogenesis, which expands our understanding of the critical cellular participants to include inflammatory fibroblasts and their cellular interactions.
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- 2023
22. Novel insights into atopic dermatitis.
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Tsoi, Lam, Gudjonsson, Johann, Schuler, Charles, Billi, Allison, and Maverakis, Emanual
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Atopic dermatitis ,Janus kinase inhibitors ,T(H)2 ,epithelial barrier ,Humans ,Dermatitis ,Atopic ,Cytokines ,Immune System ,Biomarkers ,Mast Cells - Abstract
Recent research into the pathophysiology and treatment of atopic dermatitis (AD) has shown notable progress. An increasing number of aspects of the immune system are being implicated in AD, including the epithelial barrier, TH2 cytokines, and mast cells. Major advances in therapeutics were made in biologic cytokine and receptor antagonists and among Janus kinase inhibitors. We focus on these areas and address new insights into AD epidemiology, biomarkers, endotypes, prevention, and comorbidities. Going forward, we expect future mechanistic insights and therapeutic advances to broaden physicians ability to diagnose and manage AD patients, and perhaps to find a cure for this chronic condition.
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- 2023
23. Impact of half-wave plate systematics on the measurement of cosmic birefringence from CMB polarization
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Monelli, Marta, Komatsu, Eiichiro, Adler, Alexandre E., Billi, Matteo, Campeti, Paolo, Dachlythra, Nadia, Duivenvoorden, Adriaan J., Gudmundsson, Jon E., and Reinecke, Martin
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Polarization of the cosmic microwave background (CMB) can probe new parity-violating physics such as cosmic birefringence (CB), which requires exquisite control over instrumental systematics. The non-idealities of the half-wave plate (HWP) represent a source of systematics when used as a polarization modulator. We study their impact on the CMB angular power spectra, which is partially degenerate with CB and miscalibration of the polarization angle. We use full-sky beam convolution simulations including HWP to generate mock noiseless time-ordered data, process them through a bin averaging map-maker, and calculate the power spectra including $TB$ and $EB$ correlations. We also derive analytical formulae which accurately model the observed spectra. For our choice of HWP parameters, the HWP-induced angle amounts to a few degrees, which could be misinterpreted as CB. Accurate knowledge of the HWP is required to mitigate this. Our simulation and analytical formulae will be useful for deriving requirements for the accuracy of HWP calibration., Comment: 12 pages + appendices and bibliography, 5 figures, 1 table; accepted for publication in JCAP
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- 2022
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24. A note on the Nielsen realization problem for HK manifolds
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Billi, Simone
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Mathematics - Algebraic Geometry ,Mathematics - Geometric Topology ,14J42, 53C26, 32Q20 - Abstract
We give an answer to the Nielsen realization problem for hyper- K\"ahler manifolds in terms of the same invariant used for K3 surfaces. We determine that, for some of the known deformation types, the representation of the mapping class group on the second cohomology admits a section on its image and produce an example where lifting of diffeomorphisms behaves differently than the case of homeomeorphisms., Comment: The previous version contained a gap. Preliminary version, 7 pages. Comments are welcome!
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- 2022
25. Older Patients With Interstitial Lung Disease Feature a Distinct Clinical Profile
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Laura Feltrer-Martínez, Sandra Orozco, Ana Alonso, Paloma Millan-Billi, Silvia Barril, Gisela Ruibal, Joel Francesqui, David Lobo-Prat, Ana Gimenez, Laura Lopez, Laura Martinez-Martinez, Ivan Castellvi, and Diego Castillo
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Enfermedad pulmonar intersticial difusa ,Anciano ,Pronóstico ,Etiología ,Diagnóstico ,Diseases of the respiratory system ,RC705-779 - Abstract
Introduction: There are few studies investigating the clinical profile of older patients with interstitial lung disease (ILD), so this study investigated the characteristics of the older population diagnosed with ILD. Material and methods: Retrospective study in a population of new referrals at an ILD clinic from January 2013 to September 2017. Patients over 64 years were selected. Data collection included diseases variables, diagnostic procedures and comorbidities. Gender-age-physiology (GAP) stage, composite physiologic index (CPI) and Charlson index was calculated. Statistical analysis was performed to investigate risk factors associated with survival. Results: A total of 232 patients were included in this study. Mean age was 76.3 years (SD 6.5). As per protocol, 69.3% completed the initial assessment but this was lower in the elderly group (61.5%). The most frequent diagnosis was unclassifiable ILD (24.1%), followed by ILD associated with connective tissue disease (21.6%), IPF (12.1%) and hypersensitivity pneumonitis (10.3%). During follow-up (36.7 months (SD 28.6)) a significant proportion of patients died (55 cases, 23.7% of the cohort), especially in the late older group (30.4%). Kaplan–Meier curves showed that those over 75 years have a worse survival even when adjusted by covariables (p
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- 2024
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26. SLMAP3 is crucial for organogenesis through mechanisms involving primary cilia formation
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Ana Paula Dias, Taha Rehmani, Billi Dawn Applin, Maysoon Salih, and Balwant Tuana
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SLMAP3 ,STRIPAK ,FGFR1OP2 ,PCP ,primary cilia ,Hippo pathway ,Biology (General) ,QH301-705.5 - Abstract
SLMAP3 is a constituent of the centrosome and is known to assemble with the striatin-interacting phosphatase and kinase (STRIPAK) complex, where it has been reported to repress Hippo signalling. The global knockout of SLMAP3 in mice results in embryonic/perinatal lethality and stunted growth without changes in the phosphorylation status of YAP. Diverse phenotypes present in the SLMAP3−/− embryos include reduced body axis, small and abnormal organs resembling defects in planar cell polarity (PCP) signalling, while also displaying the notable polycystic kidneys, a known manifestation of ciliopathies. Analysis of cell polarity in primary mouse embryonic fibroblasts (MEFs) including cell migration, orientation and mitotic spindle angle did not reveal any changes due to SLMAP3 loss in these cells, although the expression of DVL3 was significantly reduced. Furthermore, MEFs lacking FGFR1OP2 or STRN3, two other STRIPAK members, did not reveal any significant changes in any of these parameters either. Significant changes in the number of ciliated cells and primary cilium length in SLMAP3 and FGFR1OP2 deficient MEFs were evident, while a reduced primary cilium length was notable in chondrocytes of SLMAP3 deficient embryos. Our findings suggest that SLMAP3 is essential for mouse embryogenesis through novel mechanisms involving the primary cilium/PCP and protein stability independent of Hippo signalling.
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- 2024
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27. Far-red light photoacclimation in a desert Chroococcidiopsis strain with a reduced FaRLiP gene cluster and expression of its chlorophyll f synthase in space-resistant isolates
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Giorgia di Stefano, Mariano Battistuzzi, Nicoletta La Rocca, Vera M. Selinger, Dennis J. Nürnberg, and Daniela Billi
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Chroococcidiopsis ,FaRLiP ,space exploration ,Chl f synthase ,genetic manipulation ,Microbiology ,QR1-502 - Abstract
IntroductionSome cyanobacteria can use far-red light (FRL) to drive oxygenic photosynthesis, a phenomenon known as Far-Red Light Photoacclimation (FaRLiP). It can expand photosynthetically active radiation beyond the visible light (VL) range. Therefore, it holds promise for biotechnological applications and may prove useful for the future human exploration of outer space. Typically, FaRLiP relies on a cluster of ~20 genes, encoding paralogs of the standard photosynthetic machinery. One of them, a highly divergent D1 gene known as chlF (or psbA4), is the synthase responsible for the formation of the FRL-absorbing chlorophyll f (Chl f) that is essential for FaRLiP. The minimum gene set required for this phenotype is unclear. The desert cyanobacterium Chroococcidiopsis sp. CCMEE 010 is unusual in being capable of FaRLiP with a reduced gene cluster (15 genes), and it lacks most of the genes encoding FR-Photosystem I.MethodsHere we investigated whether the reduced gene cluster of Chroococcidiopsis sp. CCMEE 010 is transcriptionally regulated by FRL and characterized the spectral changes that occur during the FaRLiP response of Chroococcidiopsis sp. CCMEE 010. In addition, the heterologous expression of the Chl f synthase from CCMEE 010 was attempted in three closely related desert strains of Chroococcidiopsis.ResultsAll 15 genes of the FaRLiP cluster were preferentially expressed under FRL, accompanied by a progressive red-shift of the photosynthetic absorption spectrum. The Chl f synthase from CCMEE 010 was successfully expressed in two desert strains of Chroococcidiopsis and transformants could be selected in both VL and FRL.DiscussionIn Chroococcidiopsis sp. CCME 010, all the far-red genes of the unusually reduced FaRLiP cluster, are transcriptionally regulated by FRL and two closely related desert strains heterologously expressing the chlF010 gene could grow in FRL. Since the transformation hosts had been reported to survive outer space conditions, such an achievement lays the foundation toward novel cyanobacteria-based technologies to support human space exploration.
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- 2024
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28. Transition in action: toward a social theory of the governance of transitions
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Marco Billi, Cristina Zurbriggen, Anahí Urquiza, and Angel Allendes
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sustainable transition ,Luhmann ,socio-technical approach ,socio-ecological approach ,co-construction methodologies ,Sociology (General) ,HM401-1281 - Abstract
This article explores how a re-interpretation of the socio-technical, socio-ecological and transition design approaches to transition from the point of view of Niklas Luhmann’s general systems theory of society. The need to understand and promote changes that include a technological and ecological dimension has led to different approaches, such as socio-technical or socio-environmental approaches, to incorporate links with society. While these approaches often include sociological insights, they rarely offer a general understanding of how these are embedded into society. We need a new environmental sociology that helps catalyze change processes with a collectively reorganized society, empowering more radically transformative actions to change the current structures and processes that have led us to where we are today. The article offers a cross-sectional look at the socio-ecological and socio-technical systems literature, specifically for what concerns their understanding of the ‘systems’ in transition and how they can be governed, and re-interpret it from the theoretical lens of the deep sociological knowledge, which refers to the profound understanding of social systems and their dynamics, embedded in Luhmann’s theory of social systems. From here, we suggest the second-order coupling for a sociologically grounded understanding of the interactions that comprise socio-ecological and socio-technical systems, heterogeneous and almost self-organizing assemblies of social, technical, and natural elements and processes. At the same time, third-order couplings are analyzed, focused on governance, relationships between operations, and structures mediated by a deliberate attempt to ensure coherence and coordination against the autonomy and heterogeneity of socio-techno-ecological systems. Therefore, this manuscript offers a deeper conceptual and methodological understanding of socio-techno-ecological couplings and systems in the context of sustainability transformation and gives insights into its governance.
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- 2024
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29. Double EPW-sextics with actions of A7 and irrational GM threefolds
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Billi, Simone and Wawak, Tomasz
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Mathematics - Algebraic Geometry - Abstract
We construct two examples of projective hyper-K\"ahler fourfolds of K3[2]-type with an action of the alternating group A7, making them some of the most symmetric hyper-K\"ahler fourfolds. They are realized as so called double EPW sextics and this allows us to construct an explicit family of irrational Gushel-Mukai threefolds., Comment: 9 pages, final version
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- 2022
30. Planck constraints on cross-correlations between anisotropic cosmic birefringence and CMB polarization
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Bortolami, Marco, Billi, Matteo, Gruppuso, Alessandro, Natoli, Paolo, and Pagano, Luca
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Astrophysics - Cosmology and Nongalactic Astrophysics - Abstract
Cosmic Birefringence (CB) is the in-vacuo rotation of the linear polarization direction of photons during propagation, caused by parity-violating extensions of Maxwell electromagnetism. We build low resolution CB angle maps using Planck Legacy and NPIPE products and provide for the first time estimates of the cross-correlation spectra $C_L^{\alpha E}$ and $C_L^{\alpha B}$ between the CB and the CMB polarization fields. We also provide updated CB auto-correlation spectra $C_L^{\alpha\alpha}$ as well as the cross-correlation $C_L^{\alpha T}$ with the CMB temperature field. We report constraints by defining the scale-invariant amplitudes $A^{\alpha X} \equiv L(L + 1)C_L^{\alpha X}/2\pi$, where $X = \alpha, T, E, B$, finding no evidence of CB. In particular, we find $A^{\alpha E} = (-7.8 \pm 5.6)$ nK deg and $A^{\alpha B} = (0.3 \pm 4.0)$ nK deg at 68% C.L.., Comment: 24 pages, 14 figures. Accepted for publication in JCAP
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- 2022
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31. Differential cell composition and split epidermal differentiation in human palm, sole, and hip skin
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Wiedemann, Julie, Billi, Allison C, Bocci, Federico, Kashgari, Ghaidaa, Xing, Enze, Tsoi, Lam C, Meller, Leo, Swindell, William R, Wasikowski, Rachael, Xing, Xianying, Ma, Feiyang, Gharaee-Kermani, Mehrnaz, Kahlenberg, J Michelle, Harms, Paul W, Maverakis, Emanual, Nie, Qing, Gudjonsson, Johann E, and Andersen, Bogi
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Biological Sciences ,Human Genome ,Clinical Research ,Genetics ,1.1 Normal biological development and functioning ,Skin ,Humans ,Keratinocytes ,Cell Differentiation ,Hand ,Cells ,Cultured ,Epidermis ,CP: Cell biology ,RNA FISH ,epidermal differentation ,fibroblast ,human epidermis ,keratinocyte ,palm ,palmoplantar skin ,single-cell RNA sequencing ,skin ,sole ,Biochemistry and Cell Biology ,Medical Physiology ,Biological sciences - Abstract
Palmoplantar skin is structurally and functionally unique, but the transcriptional programs driving this specialization are unclear. Here, we use bulk and single-cell RNA sequencing of human palm, sole, and hip skin to describe the distinguishing characteristics of palmoplantar and non-palmoplantar skin while also uncovering differences between palmar and plantar sites. Our approach reveals an altered immune environment in palmoplantar skin, with downregulation of diverse immunological processes and decreased immune cell populations. Further, we identify specific fibroblast populations that appear to orchestrate key differences in cell-cell communication in palm, sole, and hip. Dedicated keratinocyte analysis highlights major differences in basal cell fraction among the three sites and demonstrates the existence of two spinous keratinocyte populations constituting parallel, site-selective epidermal differentiation trajectories. In summary, this deep characterization of highly adapted palmoplantar skin contributes key insights into the fundamental biology of human skin and provides a valuable data resource for further investigation.
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- 2023
32. Soil bacterial and fungal microbiomes under cotton production are more sensitive to tillage and cover crops than irrigation level in a semi-arid sandy soil
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Petermann, Billi Jean, Acosta-Martinez, Veronica, Laza, Haydee E., Lewis, Katie, Steffan, Joshua, and Slaughter, Lindsey C.
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- 2024
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33. A novel method for landslide deformation monitoring by fusing UAV photogrammetry and LiDAR data based on each sensor's mapping advantage in regards to terrain feature
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Sestras, Paul, Badea, Gheorghe, Badea, Ana Cornelia, Salagean, Tudor, Oniga, Valeria-Ersilia, Roșca, Sanda, Bilașco, Ștefan, Bruma, Simion, Spalević, Velibor, Kader, Shuraik, Billi, Paolo, and Nedevschi, Sergiu
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- 2025
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34. Clinical characteristics and outcomes of vaccinated patients hospitalised with SARS-CoV-2 breakthrough infection: Multi-IPV, a multicentre study in Northern Italy
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Andrea Lombardi, Simone Villa, Marta Colaneri, Giovanni Scaglione, Francesca Bai, Benedetta Varisco, Valeria Bono, Antonio Vena, Chiara Dentone, Chiara Russo, Mauro Tettamanti, Giulia Renisi, Giulia Viero, Cecilia Azzarà, Marco Mantero, Flora Peyvandi, Matteo Bassetti, Giulia Marchetti, Antonio Muscatello, Alessandro Nobili, Andrea Gori, Alessandra Bandera, Silvano Bosari, Luigia Scudeller, Giuliana Fusetti, Laura Rusconi, Silvia Dell’Orto, Daniele Prati, Luca Valenti, Silvia Giovannelli, Maria Manunta, Giuseppe Lamorte, Francesca Ferarri, Andrea Gori., Davide Mangioni, Laura Alagna, Giorgio Bozzi, Andrea Lombardi., Riccardo Ungaro, Giuseppe Ancona, Marco Mussa, Bianca Veronica Mariani, Matteo Bolis, Nathalie Iannotti, Serena Ludovisi, Agnese Comelli, Simona Biscarini, Valeria Castelli, Emanuele Palomba, Marco Fava, Carlo Alberto Peri, Paola Saltini, Teresa Itri, Valentina Ferroni, Valeria Pastore, Roberta Massafra, Arianna Liparoti, Toussaint Muheberimana, Alessandro Giommi, Rosaria Bianco, Grazia Eliana Chitani, Chiara Bobbio, Irene De Matteis, Angelo Bianchi Bonomi, Roberta Gualtierotti, Barbara Ferrari, Raffaella Rossio, Nadia Boasi, Erica Pagliaro, Costanza Massimo, Michele De Caro, Andrea Giachi, Nicola Montano, Barbara Vigone, Chiara Bellocchi, Angelica Carandina, Elisa Fiorelli, Valerie Melli, Eleonora Tobaldini, Francesco Blasi, Stefano Aliberti, Maura Spotti, Leonardo Terranova, Sofia Misuraca, Alice D’Adda, Silvia Della Fiore, Marta Di Pasquale, Marco Mantero., Martina Contarini, Margherita Ori, Letizia Morlacchi, Valeria Rossetti, Andrea Gramegna, Maria Pappalettera, Mirta Cavallini, Agata Buscemi, Marco Vicenzi, Irena Rota, Giorgio Costantino, Monica Solbiati, Ludovico Furlan, Marta Mancarella, Giulia Colombo, Giorgio Colombo, Alice Fanin, Mariele Passarella, Valter Monzani, Ciro Canetta, Angelo Rovellini, Laura Barbetta, Filippo Billi, Christian Folli, Silvia Accordino, Diletta Maira, Cinzia Maria Hu, Irene Motta, Natalia Scaramellini, Anna Ludovica Fracanzani, Rosa Lombardi, Annalisa Cespiati, Matteo Cesari, Tiziano Lucchi, Marco Proietti, Laura Calcaterra, Clara Mandelli, Carlotta Coppola, Arturo Cerizza, Antonio Maria Pesenti, Giacomo Grasselli, Alessandro Galazzi, Alessandro Nobili., Igor Monti, Alessia Antonella Galbussera, Ernesto Crisafulli, Domenico Girelli, Alessio Maroccia, Daniele Gabbiani, Fabiana Busti, Alice Vianello, Marta Biondan, Filippo Sartori, Paola Faverio, Alberto Pesci, Stefano Zucchetti, Paolo Bonfanti, Marianna Rossi, Ilaria Beretta, Anna Spolti, Sergio Harari, Davide Elia, Roberto Cassandro, Antonella Caminati, Francesco Cipollone, Maria Teresa Guagnano, Damiano D’Ardes, Ilaria Rossi, Francesca Vezzani, Antonio Spanevello, Francesca Cherubino, Dina Visca, Marco Contoli, Alberto Papi, Luca Morandi, Nicholas Battistini, Guido Luigi Moreo, Pasqualina Iannuzzi, Daniele Fumagalla, and Sara Leone
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Vaccination ,Breakthrough infection ,SARS-COV-2 ,Infectious and parasitic diseases ,RC109-216 ,Public aspects of medicine ,RA1-1270 - Abstract
Background: Despite the well-known efficacy of anti-COVID-19 vaccines in preventing morbidity and mortality, several vaccinated individuals are diagnosed with SARS-CoV-2 breakthrough infection, which might require hospitalisation. This multicentre, observational, and retrospective study aimed to investigate the clinical characteristics and outcomes of vaccinated vs. non-vaccinated patients, both hospitalised with SARS-CoV-2 infection in 3 major hospitals in Northern Italy. Methods: Data collection was retrospective, and paper and electronic medical records of adult patients with a diagnosed SARS-CoV-2 infection were pseudo-anonymised and analysed. Vaccinated and non-vaccinated individuals were manually paired, using a predetermined matching criterion (similar age, gender, and date of hospitalisation). Demographic, clinical, treatment, and outcome data were compared between groups differing by vaccination status using Pearson’s Chi-square and Mann-Whitney tests. Moreover, multiple logistic regression analyses were performed to assess the impact of vaccination status on ICU admission or intra-hospital mortality. Results: Data from 360 patients were collected. Vaccinated patients presented with a higher prevalence of relevant comorbidities, like kidney replacement therapy or haematological malignancy, despite a milder clinical presentation at the first evaluation. Non-vaccinated patients required intensive care more often than their vaccinated counterparts (8.8% vs. 1.7%, p = 0.002). Contrariwise, no difference in intra-hospital mortality was observed between the two groups (19% vs. 20%, p = 0.853). These results were confirmed by multivariable logistic regressions, which showed that vaccination was significantly associated with decreased risk of ICU admission (aOR=0.172, 95%CI: 0.039–0.542, p = 0.007), but not of intra-hospital mortality (aOR=0.996, 95%CI: 0.582–1.703, p = 0.987). Conclusions: This study provides real-world data on vaccinated patients hospitalised with COVID-19 in Northern Italy. Our results suggest that COVID-19 vaccination has a protective role in individuals with higher risk profiles, especially regarding the need for ICU admission. These findings contribute to our understanding of SARS-CoV-2 infection outcomes among vaccinated individuals and emphasise the importance of vaccination in preventing severe disease, particularly in those countries with lower first-booster uptake rates.
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- 2024
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35. NEURAL RADIANCE FIELDS (NERF) FOR MULTI-SCALE 3D MODELING OF CULTURAL HERITAGE ARTIFACTS
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V. Croce, G. Forleo, D. Billi, M. G. Bevilacqua, A. Piemonte, and G. Caroti
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Technology ,Engineering (General). Civil engineering (General) ,TA1-2040 ,Applied optics. Photonics ,TA1501-1820 - Abstract
This research aims to assess the adaptability of Neural Radiance Fields (NeRF) for the digital documentation of cultural heritage objects of varying size and complexity. We discuss the influence of object size, desired scale of representation, and level of detail on the choice to use NeRF for cultural heritage documentation, providing insights for practitioners in the field. Case studies range from historic pavements to architectural elements or buildings, representing diverse and multi-scale scenarios encountered in heritage documentation procedures. The findings suggest that NeRFs perform well in scenarios with homogeneous textures, variable lighting conditions, reflective surfaces, and fine details. However, they exhibit higher noise and lower texture quality compared to other consolidated image-based techniques as photogrammetry, especially in case of small-scale artifacts.
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- 2024
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36. Biogeographic and disease-specific alterations in epidermal lipid composition and single cell analysis of acral keratinocytes.
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Merleev, Alexander A, Le, Stephanie T, Alexanian, Claire, Toussi, Atrin, Xie, Yixuan, Marusina, Alina I, Watkins, Steven M, Patel, Forum, Billi, Allison C, Wiedemann, Julie, Izumiya, Yoshihiro, Kumar, Ashish, Uppala, Ranjitha, Kahlenberg, J Michelle, Liu, Fu-Tong, Adamopoulos, Iannis E, Wang, Elizabeth A, Ma, Chelsea, Cheng, Michelle Y, Xiong, Halani, Kirane, Amanda, Luxardi, Guillaume, Andersen, Bogi, Tsoi, Lam C, Lebrilla, Carlito B, Gudjonsson, Johann E, and Maverakis, Emanual
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Biomedical and Clinical Sciences ,Health Sciences ,Biotechnology ,Genetics ,2.1 Biological and endogenous factors ,Skin ,Carbon ,Ceramides ,Epidermis ,Humans ,Keratinocytes ,Single-Cell Analysis ,Dermatology ,Biomedical and clinical sciences ,Health sciences - Abstract
The epidermis is the outermost layer of skin. Here, we used targeted lipid profiling to characterize the biogeographic alterations of human epidermal lipids across 12 anatomically distinct body sites, and we used single-cell RNA-Seq to compare keratinocyte gene expression at acral and nonacral sites. We demonstrate that acral skin has low expression of EOS acyl-ceramides and the genes involved in their synthesis, as well as low expression of genes involved in filaggrin and keratin citrullination (PADI1 and PADI3) and corneodesmosome degradation, changes that are consistent with increased corneocyte retention. Several overarching principles governing epidermal lipid expression were also noted. For example, there was a strong negative correlation between the expression of 18-carbon and 22-carbon sphingoid base ceramides. Disease-specific alterations in epidermal lipid gene expression and their corresponding alterations to the epidermal lipidome were characterized. Lipid biomarkers with diagnostic utility for inflammatory and precancerous conditions were identified, and a 2-analyte diagnostic model of psoriasis was constructed using a step-forward algorithm. Finally, gene coexpression analysis revealed a strong connection between lipid and immune gene expression. This work highlights (a) mechanisms by which the epidermis is uniquely adapted for the specific environmental insults encountered at different body surfaces and (b) how inflammation-associated alterations in gene expression affect the epidermal lipidome.
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- 2022
37. Enzymatic removal of Numts from Panthera tigris DNA samples
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James Creecy, Billi Coil, and Kaitlyn Hickey
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numt ,Pseudogene ,mtDNA analysis ,Species identification ,Wildlife forensics ,Ecology ,QH540-549.5 ,Veterinary medicine ,SF600-1100 - Abstract
Forensic mitochondrial DNA analysis is a vital investigative tool for wildlife casework, but numts continue to complicate DNA analysis. A major goal of wildlife forensic DNA analysis is to identify non-human biological evidence to its taxonomic source. Species identification is accomplished by sequencing genetic markers on the mitochondrial genome and comparing evidentiary sequence data to published reference sequences. Due to the high level of sequence similarity between mitochondrial genes and numts, current sequencing methods result in co-amplification of the target gene marker and non-target numt. Co-amplification of target and non-target loci results in ambiguous nucleotide calls in sequence data. Reducing the influence of numts during sequence analysis will provide a technique that will maximize accuracy and minimize error in taxonomic identifications. To overcome the analytical burden of numts, we studied the enzymatic removal of numts using exonuclease V. To evaluate the feasibility of exonuclease V as a numt removal method, total Panthera tigris DNA was extracted from blood and liver and divided into three treatment groups: untreated, 1st digest, and 2nd digest. For the untreated sample, 7.6 % of the 620 bp sequence data was classified as ambiguous. Following treatment, all samples demonstrated a reduction in ambiguous calls: liver-1st digest (48 h): 6.6 %, liver-2nd digest (48 h + 16 h): 1.8 %, and blood-1st digest (48 h): 0 %. Based on this preliminary study, exonuclease V treatment effectively removed numts before sequencing analysis. While exonuclease V treatment has demonstrated potential, additional studies are required to optimize the reaction and fully validate the methodology.
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- 2024
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38. Noninvasive Tape-Stripping with High-Resolution RNA Profiling Effectively Captures a Preinflammatory State in Nonlesional Psoriatic Skin
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Tsoi, Lam C, Xing, Xianying, Xing, Enze, Wasikowski, Rachael, Shao, Shuai, Zeng, Chang, Plazyo, Olesya, Kirma, Joseph, Jiang, Yanyung, Billi, Allison C, Sarkar, Mrinal K, Turnier, Jessica L, Uppala, Ranjitha, Smith, Kathleen M, Helfrich, Yolanda, Voorhees, John J, Maverakis, Emanual, Modlin, Robert L, Kahlenberg, J Michelle, Scott, Victoria E, and Gudjonsson, Johann E
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Biomedical and Clinical Sciences ,Clinical Sciences ,Psoriasis ,Autoimmune Disease ,Clinical Research ,Genetics ,Skin ,Epidermis ,Gene Expression Profiling ,Humans ,RNA ,Oncology and Carcinogenesis ,Dermatology & Venereal Diseases ,Clinical sciences - Abstract
Tape stripping is a minimally invasive, nonscarring method that can be utilized to assess gene expression in the skin but is infrequently used given technical constraints. By comparing different tape stripping technologies and full-thickness skin biopsy results of lesional and nonlesional psoriatic skin from the same patients, we demonstrate that tape stripping with optimized high-resolution transcriptomic profiling can be used to effectively assess and characterize inflammatory responses in the skin. Upon comparison with single-cell RNA-sequencing data from psoriatic full-thickness skin biopsies, we illustrate that tape-stripping efficiently captures the transcriptome of the upper layers of the epidermis with sufficient resolution to assess the molecular components of the feed-forward immune amplification pathway in psoriasis. Notably, nonlesional psoriatic skin sampled by tape stripping demonstrates activated, proinflammatory changes when compared to healthy control skin, suggesting a prepsoriatic state, which is not captured on full-thickness skin biopsy transcriptome profiling. This work illustrates an approach to assess inflammatory response in the epidermis by combining noninvasive sampling with high throughput RNA-sequencing, providing a foundation for biomarker discoveries and mechanism of action studies for inflammatory skin conditions.
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- 2022
39. Peristomal intestinal metaplasia with response to serial electrosurgery
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McKayla Poppens, BA, Thomas Hester, MD, Sruthi Renati, MD, Allison C. Billi, MD, PhD, Lori Lowe, MD, and Julie E. Mervak, MD
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cutaneous intestinal metaplasia ,ectopic gut tissue ,ileostomy ,inflammatory bowel disease ,ostomy ,peristomal ,Dermatology ,RL1-803 - Published
- 2024
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40. Pharmacokinetics Profile and Genetics of Double Antiviral Therapy with Remdesivir and Nirmatrelvir/Ritonavir for Prolonged COVID-19 in Patients Treated with Rituximab: A Real-Life Study and Literature Review
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Ilaria De Benedetto, Silvia Corcione, Carlotta Giambra, Matteo Ferrante, Simone Mornese Pinna, Elisa Zanotto, Alice Palermiti, Francesca Sidoti, Luca Scaglione, Cecilia Grosso, Martina Billi, Tommaso Lupia, Sara Soloperto, Jessica Cusato, Cristina Costa, Antonio D’Avolio, and Francesco Giuseppe De Rosa
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pharmacokinetics ,pharmacogenetics ,therapeutic drug monitoring ,COVID-19 ,remdesivir ,nirmatrelvir/ritonavir ,Therapeutics. Pharmacology ,RM1-950 - Abstract
Introduction: Patients with hematologic malignancies are more likely to develop severe and prolonged SARS-CoV-2 infection, often showing viral persistence despite the use of authorized antivirals. Herein, we report the cases of four patients who received rituximab for different conditions and developed persistent COVID-19 treated with an extended course of dual antivirals, Nirmatrelvir/Ritonavir and Remdesivir. Moreover, we describe the pharmacokinetics and pharmacogenetics (PK/PG) characteristics of Nirmatrelvir/Ritonavir and Remdesivir treatment in two of these patients. Methods: Plasma specimens for evaluation of trough concentrations (Ctrough) were collected 10 min before the daily dose administration, in addition to 3 h (Cmax), 4 h (C4h), 6 h (C6h) and 1 h (Cmax) after the administration of Nirmatrelvir/Ritonavir and Remdesivir, respectively. The following gene single-nucleotide polymorphisms (SNPs) were investigated: ABCB1 3435 (rs1045642) C > T, ABCB1 1236 (rs1128503) C > T, PXR 63396 (rs2472667) T > C, CYP2D6 (rs1135840) G > C, and CYP3A4*1B (rs2740574) G > A. Results: Double antiviral treatment was successful in terms of symptoms resolution, whereas three out of four patients achieved microbiological eradication. Based on our results, concentrations of Nirmatrelvir ranging from 50 to 5000 ng/mL were effective, whereas a higher concentration (range 1068–3377 ng/mL), compared to that previously reported in patients with similar weight and BMI, was evidenced for Ritonavir. Considering the genetic variant analysis, ABCB1 3435 CT and 1236 CT genotypes were found in patient 1; and ABCB1 3435 CC and 1236 CC in patient 2. In conclusion, this real-life study supports the usefulness of TDM and genetics in immunocompromised patients with persistent SARS-CoV-2 infection, a challenging setting for clinicians in which personalized medicine may improve outcome.
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- 2024
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41. Bronchoalveolar cytokine profile differentiates Pulmonary Langerhans cell histiocytosis patients from other smoking-related interstitial lung diseases
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Silvia Barril, Paloma Acebo, Paloma Millan-Billi, Alfonso Luque, Oriol Sibila, Carlos Tarín, Abdellatif Tazi, Diego Castillo, and Sonsoles Hortelano
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Pulmonary Langerhans cell histiocytosis ,Interstitial lung disease ,Bronchoalveolar lavage ,Cytokines ,Inflammatory profile ,Diseases of the respiratory system ,RC705-779 - Abstract
Abstract Background Pulmonary Langerhans cell histiocytosis (PLCH) is a rare interstitial lung disease (ILD) associated with smoking, whose definitive diagnosis requires the exclusion of other forms of ILD and a compatible surgical lung biopsy. Bronchoalveolar lavage (BAL) is commonly proposed for the diagnosis of ILD, including PLCH, but the diagnostic value of this technique is limited. Here, we have analyzed the levels of a panel of cytokines and chemokines in BAL from PLCH patients, in order to identify a distinct immune profile to discriminate PLCH from other smoking related-ILD (SR-ILD), and comparing the results with idiopathic pulmonary fibrosis (IPF) as another disease in which smoking is considered a risk factor. Methods BAL samples were collected from thirty-six patients with different ILD, including seven patients with PLCH, sixteen with SR-ILD and thirteen with IPF. Inflammatory profiles were analyzed using the Human Cytokine Membrane Antibody Array. Principal component analysis (PCA) was performed to reduce dimensionality and protein–protein interaction (PPI) network analysis using STRING 11.5 database were conducted. Finally, Random forest (RF) method was used to build a prediction model. Results We have found significant differences (p
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- 2023
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42. La Cuestión de la naturaleza en el pensamiento de Donna Haraway
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Guadalupe Lucero, Noelia Billi, and Paula Fleisner
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haraway. naturaleza. materialismo posthumano ,Geography (General) ,G1-922 - Abstract
Para Donna Haraway, la naturaleza es, a la vez, un topos (un lugar) y un tropos (una figura literaria). A partir de esta convergencia entre espacio y tiempo (una narrativa que emerge de la configuración del mundo que se materializa como corporalidades de trayectorias múltiples y desordenadas), Haraway medita sostenidamente acerca del deseo manifiesto por aquel “lugar común” que la naturaleza señala, e intenta reformular lo común “natural” en términos que desafían el patriarcado y el capitalismo. Si el capitalismo puede ser comprendido como el proyecto de una creciente abolición del espacio debido a la aceleración del tiempo, su intervención en torno a la espacialidad común resulta particularmente sugerente. en efecto, disputando la sensibilidad a la tradición clásica (que geometriza el espacio y hace de la naturaleza algo externo), Haraway ofrece un repertorio de herramientas para pensar la co-habitación en términos capaces de dar cuenta tanto de la relacionalidad siempre tensional (de la que surge lo que existe) como de las narrativas que tejen espacio y tiempo, mundo y relato. Para abordar estas ideas, en primer lugar, delimitaremos lo que entendemos por materialismo posthumano; en segundo lugar, mencionaremos las principales implicancias de la noción kantiana de naturaleza; y, en tercer lugar, consideraremos los aportes de Haraway a esta discusión.
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- 2023
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43. Plantismo del fin del mundo: Estética de la explicitud entre plantas radioactivas y flores robóticas
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Noelia Billi
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plantismo ,fin del mundo ,existencia vegetal ,Fine Arts ,Visual arts ,N1-9211 - Abstract
Muchas de las prácticas artísticas contemporáneas preocupadas por la emergencia ambiental se orientan a poner en primer plano la agencia de entidades no humanas como contrapeso imaginario de los procesos de destrucción de los ecosistemas originados en la acción humana. Mi objetivo en este trabajo es indagar el modo en que el sensorium vegetal se elabora en el marco de algunas prácticas artísticas que, preocupadas por la crisis ecológica, apuntan a darle volumen a la idea de “fin del mundo” (tal como creemos conocerlo) y cómo ello puede ser analizado desde el punto de vista de la estética de la explicitud elaborada por Silvia Schwarzböck. Para ello, me centraré en algunas prácticas artísticas que construyen un sensorium vegetal que nos devuelve una imagen particular del mundo. En primer lugar, analizaremos el Herbario de Chernóbil (2016), una obra de Tondeur y Marder que conjuga fotogramas y ensayística de las plantas radioactivas resultantes del desastre nuclear ocurrido en la ciudad ucraniana. En segundo lugar, la obra de Joaquín Fargas, Sunflower, centinela del cambio climático (2007), una obra de ingeniería robótica que semeja la dinámica de la flor para operar como estación meteorológica en la ciudad más austral de Argentina, Ushuaia
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- 2023
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44. Cannabinoid levels description in a cohort of patients with chronic and neuropathic pain treated with Cannabis decoction: A possible role of TDM
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Manca, Alessandra, Valz, Cristina, Chiara, Francesco, Mula, Jacopo, Palermiti, Alice, Billi, Martina, Antonucci, Miriam, Nicolò, Amedeo De, Luxardo, Nicola, Imperiale, Daniele, Vischia, Flavio, De Cori, David, Cusato, Jessica, and D’Avolio, Antonio
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- 2024
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45. Diagnostic Value of Krebs von den Lungen (KL-6) for Interstitial Lung Disease: A European Prospective Cohort
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Millan-Billi, Paloma, Castellví, Iván, Martinez-Martinez, Laura, Mariscal, Anais, Barril, Silvia, D’Alessandro, Miriana, Franquet, Tomás, and Castillo, Diego
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- 2024
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46. Nonlesional lupus skin contributes to inflammatory education of myeloid cells and primes for cutaneous inflammation
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Billi, Allison C, Ma, Feiyang, Plazyo, Olesya, Gharaee-Kermani, Mehrnaz, Wasikowski, Rachael, Hile, Grace A, Xing, Xianying, Yee, Christine M, Rizvi, Syed M, Maz, Mitra P, Berthier, Celine C, Wen, Fei, Tsoi, Lam C, Pellegrini, Matteo, Modlin, Robert L, Gudjonsson, Johann E, and Kahlenberg, J Michelle
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Biomedical and Clinical Sciences ,Immunology ,Lupus ,Genetics ,Clinical Research ,Autoimmune Disease ,2.1 Biological and endogenous factors ,Inflammatory and immune system ,Humans ,Inflammation ,Interferon Type I ,Keratinocytes ,Lupus Erythematosus ,Cutaneous ,Myeloid Cells ,Biological Sciences ,Medical and Health Sciences ,Medical biotechnology ,Biomedical engineering - Abstract
Cutaneous lupus erythematosus (CLE) is a disfiguring and poorly understood condition frequently associated with systemic lupus. Previous studies suggest that nonlesional keratinocytes play a role in disease predisposition, but this has not been investigated in a comprehensive manner or in the context of other cell populations. To investigate CLE immunopathogenesis, normal-appearing skin, lesional skin, and circulating immune cells from lupus patients were analyzed via integrated single-cell RNA sequencing and spatial RNA sequencing. We demonstrate that normal-appearing skin of patients with lupus represents a type I interferon-rich, prelesional environment that skews gene transcription in all major skin cell types and markedly distorts predicted cell-cell communication networks. We also show that lupus-enriched CD16+ dendritic cells undergo robust interferon education in the skin, thereby gaining proinflammatory phenotypes. Together, our data provide a comprehensive characterization of lesional and nonlesional skin in lupus and suggest a role for skin education of CD16+ dendritic cells in CLE pathogenesis.
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- 2022
47. Cytokine responses in nonlesional psoriatic skin as clinical predictor to anti-TNF agents
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Tsoi, Lam C, Patrick, Matthew T, Shuai, Shao, Sarkar, Mrinal K, Chi, Sunyi, Ruffino, Bethany, Billi, Allison C, Xing, Xianying, Uppala, Ranjitha, Zang, Cheng, Fullmer, Joseph, He, Zhi, Maverakis, Emanual, Mehta, Nehal N, Perez White, Bethany E, Getsios, Spiro, Helfrich, Yolanda, Voorhees, John J, Kahlenberg, J Michelle, Weidinger, Stephan, and Gudjonsson, Johann E
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Biomedical and Clinical Sciences ,Clinical Sciences ,Autoimmune Disease ,Genetics ,Psoriasis ,Clinical Research ,Skin ,Cytokines ,Humans ,Longitudinal Studies ,RNA-Seq ,Severity of Illness Index ,Transcriptome ,Tumor Necrosis Factor Inhibitors ,etanercept ,cytokine response ,PASI ,drug response prediction ,Immunology ,Allergy - Abstract
BackgroundA major issue with the current management of psoriasis is our inability to predict treatment response.ObjectiveOur aim was to evaluate the ability to use baseline molecular expression profiling to assess treatment outcome for patients with psoriasis.MethodsWe conducted a longitudinal study of 46 patients with chronic plaque psoriasis treated with anti-TNF agent etanercept, and molecular profiles were assessed in more than 200 RNA-seq samples.ResultsWe demonstrated correlation between clinical response and molecular changes during the course of the treatment, particularly for genes responding to IL-17A/TNF in keratinocytes. Intriguingly, baseline gene expressions in nonlesional, but not lesional, skin were the best marker of treatment response at week 12. We identified USP18, a known regulator of IFN responses, as positively correlated with Psoriasis Area and Severity Index (PASI) improvement (P = 9.8 × 10-4) and demonstrate its role in regulating IFN/TNF responses in keratinocytes. Consistently, cytokine gene signatures enriched in baseline nonlesional skin expression profiles had strong correlations with PASI improvement. Using this information, we developed a statistical model for predicting PASI75 (ie, 75% of PASI improvement) at week 12, achieving area under the receiver-operating characteristic curve value of 0.75 and up to 80% accurate PASI75 prediction among the top predicted responders.ConclusionsOur results illustrate feasibility of assessing drug response in psoriasis using nonlesional skin and implicate involvement of IFN regulators in anti-TNF responses.
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- 2022
48. Acute and chronic cannabidiol treatment: In vitro toxicological aspects on human oral cells
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Pagano, Stefano, Valenti, Chiara, Negri, Paolo, Billi, Monia, Di Michele, Alessandro, Bruscoli, Stefano, Febo, Marta, Coniglio, Maddalena, and Marinucci, Lorella
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- 2024
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49. Significance of stress keratin expression in normal and diseased epithelia
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Cohen, Erez, Johnson, Craig N., Wasikowski, Rachael, Billi, Allison C., Tsoi, Lam C., Kahlenberg, J. Michelle, Gudjonsson, Johann E., and Coulombe, Pierre A.
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- 2024
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50. Subsurface geological and geophysical data from the Po Plain and the northern Adriatic Sea (north Italy)
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M. Livani, L. Petracchini, C. Benetatos, F. Marzano, A. Billi, E. Carminati, C. Doglioni, P. Petricca, R. Maffucci, G. Codegone, V. Rocca, F. Verga, and I. Antoncecchi
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Environmental sciences ,GE1-350 ,Geology ,QE1-996.5 - Abstract
The Po Plain (Italy) is one of the most densely populated and productive regions of Europe, characterized by a flourishing economy (also linked to strategic subsurface resources) and several world cultural and natural heritage sites. The coupling of socio-economic interests with geological hazards (i.e. seismic, subsidence, and flooding hazards) in this area requires accurate knowledge of the subsurface geology, the active geological processes, and the impact of human activities on natural environments to mitigate the potential natural and anthropic risks. Most data unveiling the subsurface geology of this region were produced by the hydrocarbon exploration industry. Indeed, the Po Plain hosts many hydrocarbon fields that have been discovered since the early 1950s, giving rise to the subsurface exploration through extensive seismic reflection surveys and drilling of numerous deep wells. In this work, geological and geophysical data from 160 deep wells drilled for hydrocarbon exploration and/or exploitation purposes in the Po Plain and in the facing northern Adriatic Sea have been collected and digitized along with several published geological cross-sections and maps. These data have been used to reconstruct the overall subsurface 3D architecture and to extract the physical properties of the subsurface geological units. The digitized data are suitable to be imported into geo-software environments so as to derive the geophysical and mechanical properties of the geological units for a wealth of applied and scientific studies such as geomechanical, geophysical, and seismological studies. The integrated dataset may represent a useful tool in defining regional first-order strategies to ensure the safety of the urbanized areas and human activities and to reduce natural and anthropic risks that may affect this crucial region of Europe. In particular, the data collected would be useful to highlight sensible areas where data collection and more detailed studies are needed. Nowadays, such issues are particularly relevant for the underground industry development related to the increasing interest in possible CO2 and hydrogen underground storage, which can play a fundamental role in the energy transition process towards decarbonization goals. The full dataset is available at the following link: https://doi.org/10.5281/zenodo.8126519 (Livani et al., 2023).
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- 2023
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