19 results on '"Bat T"'
Search Results
2. Distinct clinical and biological implications of various DNMT3A mutations in myeloid neoplasms
- Author
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Balasubramanian, S K, Aly, M, Nagata, Y, Bat, T, Przychodzen, B P, Hirsch, C M, Adema, V, Visconte, V, Kuzmanovic, T, Radivoyevitch, T, Nazha, A, Mukherjee, S, Sekeres, M A, and Maciejewski, J P
- Published
- 2018
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3. Invasion dynamics.
- Author
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Bat, T. L.
- Subjects
BIOLOGICAL invasions ,NONFICTION - Published
- 2017
4. Current landscape of paroxysmal nocturnal hemoglobinuria in the era of complement inhibitors and regulators.
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Shi JJ, Ozcan YM, Santos CIA, Patel H, Shammo J, and Bat T
- Abstract
Paroxysmal nocturnal hemoglobinuria (PNH) is a rare blood disorder which is caused by mutations in phosphatidylinositol glycan class A leading to hemolysis of red blood cells via complement inhibition. The first treatment for PNH, eculizumab, was FDA approved in 2007. Since then, many new treatment options for PNH have arisen. This critical review will examine all medications available for PNH on the US market, highlight several major medications in development, and discuss the risks and treatment considerations associated with each option. It is not intended to address PNH clonal dynamics, disease presentation, or discussions on when to initiate treatment., Competing Interests: Julia J. Shi, Yusuf M. Ozcan, Carlos I. Ayala Santos, Hetalkumari Patel: None. Jamile Shammo: Consultancy: Alexion, Astra Zeneca, Apellis Pharmaceutical, BMS, CTI, Celgene, Sobi, GSK, Incyte, MJH, Novartis, Sanofi; Equity Ownership: AbbVie, Baxter; Research Funding: Alexion, Astra Zeneca, Incyte, Novartis, Protagonist Therapeutics; Speakers Bureau: Alexion, Sanofi; Membership on a Board or Advisory Committee: Alexion, Apellis; Pharmaceutical, GSK, MJH, Novartis; Honoraria: Alexion, Astra Zeneca, Apellis, BMS, Celgene, CTI Pharma, Sobi, GSK, Incyte, MJH, Novartis, Sanofi. Taha Bat: Membership on Alexion Board of Directors or Advisory Committees., (© The Author(s), 2024.)
- Published
- 2024
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5. Paroxysmal nocturnal hemoglobinuria-related thrombosis in the era of novel therapies: a 2043-patient-year analysis.
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Gurnari C, Awada H, Pagliuca S, Dima D, Ullah F, Kawashima N, Kubota Y, Colak C, Visconte V, Patel BJ, Dhillon V, Marneni N, Balasubramanian SK, Kishtagari A, Bat T, and Maciejewski JP
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- Humans, Male, Female, Middle Aged, Adult, Aged, Follow-Up Studies, Hemoglobinuria, Paroxysmal complications, Hemoglobinuria, Paroxysmal drug therapy, Thrombosis etiology, Thrombosis drug therapy, Anticoagulants therapeutic use
- Abstract
Abstract: Thrombophilia is one of the principal features of paroxysmal nocturnal hemoglobinuria (PNH) and constitutes the main cause of disease morbidity/mortality. Anticomplement treatment has revolutionized the natural history of PNH, with control of the hemolytic process and abolition of thrombotic events (TEs). However, no guidelines exist for the management of thromboembolic complications in this setting, with type and duration of anticoagulation depending on individual practices. Besides, a scarcity of data is present on the efficacy of direct oral anticoagulants (DOACs). Herein, we accrued a large real-world cohort of patients with PNH from 4 US centers to explore features, predictors of TE, and anticoagulation strategies. Among 267 patients followed up for a total of 2043 patient-years, 56 (21%) developed TEs. These occurred at disease onset in 43% of cases, involving more frequently the venous system, typically as Budd-Chiari syndrome. Rate of TEs was halved in patients receiving complement inhibitors (21 vs 40 TEs per 1000 patient-years in untreated cases, with a 2-year cumulative incidence of thrombosis of 3.9% vs 18.3%, respectively), and varied according to PNH granulocytes and erythrocytes clone size, type, disease activity parameters, as well as number (≥2 mutations, or less) and variant allelic frequency of PIGA mutations. Anticoagulation with warfarin (39%), DOACs (37%), and low-molecular weight heparin (16%) was administered for a median of 29 months (interquartile range [IQR], 9-61.8). No thrombotic recurrence was observed in 19 patients treated with DOACs at a median observation of 17.1 months (IQR, 8.9-45) whereas 14 cases discontinued anticoagulation without TE recurrence at a median time of 51.4 months (IQR, 29.9-86.8)., (© 2024 American Society of Hematology. Published by Elsevier Inc. All rights are reserved, including those for text and data mining, AI training, and similar technologies.)
- Published
- 2024
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6. Thrombocytosis and megakaryocyte changes associated with PRCA.
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Abdallah J, Williams RG, Awada H, Raman G, Ozcan Y, Orland M, Mete M, Chen W, Gurnari C, Maciejewski JP, and Bat T
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- Humans, Myeloproliferative Disorders pathology, Megakaryocytes pathology, Megakaryocytes cytology, Megakaryocytes metabolism, Thrombocytosis etiology, Thrombocytosis pathology
- Published
- 2024
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7. Author Correction: Molecular patterns identify distinct subclasses of myeloid neoplasia.
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Kewan T, Durmaz A, Bahaj W, Gurnari C, Terkawi L, Awada H, Ogbue OD, Ahmed R, Pagliuca S, Awada H, Kubota Y, Mori M, Ponvilawan B, Al-Share B, Patel BJ, Carraway HE, Scott J, Balasubramanian SK, Bat T, Madanat Y, Sekeres MA, Haferlach T, Visconte V, and Maciejewski JP
- Published
- 2024
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8. Novel scheme for defining the clinical implications of TP53 mutations in myeloid neoplasia.
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Bahaj W, Kewan T, Gurnari C, Durmaz A, Ponvilawan B, Pandit I, Kubota Y, Ogbue OD, Zawit M, Madanat Y, Bat T, Balasubramanian SK, Awada H, Ahmed R, Mori M, Meggendorfer M, Haferlach T, Visconte V, and Maciejewski JP
- Subjects
- Humans, Mutation, Prognosis, Tumor Suppressor Protein p53 genetics, Leukemia, Myeloid, Acute genetics
- Abstract
Background: TP53 mutations (TP53
MT ) occur in diverse genomic configurations. Particularly, biallelic inactivation is associated with poor overall survival in cancer. Lesions affecting only one allele might not be directly leukemogenic, questioning the presence of cryptic biallelic subclones in cases with dismal prognosis., Methods: We have collected clinical and molecular data of 7400 patients with myeloid neoplasms and applied a novel model by identifying an optimal VAF cutoff using a statistically robust strategy of sampling-based regression on survival data to accurately classify the TP53 allelic configuration and assess prognosis more precisely., Results: Overall, TP53MT were found in 1010 patients. Following the traditional criteria, 36% of the cases were classified as single hits, while 64% exhibited double hits genomic configuration. Using a newly developed molecular algorithm, we found that 579 (57%) patients had unequivocally biallelic, 239 (24%) likely contained biallelic, and 192 (19%) had most likely monoallelic TP53MT . Interestingly, our method was able to upstage 192 out of 352 (54.5%) traditionally single hit lesions into a probable biallelic category. Such classification was further substantiated by a survival-based model built after re-categorization. Among cases traditionally considered monoallelic, the overall survival of those with probable monoallelic mutations was similar to the one of wild-type patients and was better than that of patients with a biallelic configuration. As a result, patients with certain biallelic hits, regardless of the disease subtype (AML or MDS), had a similar prognosis. Similar results were observed when the model was applied to an external cohort. In addition, single-cell DNA studies unveiled the biallelic nature of previously considered monoallelic cases., Conclusion: Our novel approach more accurately resolves TP53 genomic configuration and uncovers genetic mosaicism for the use in the clinical setting to improve prognostic evaluation., (© 2023. BioMed Central Ltd., part of Springer Nature.)- Published
- 2023
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9. Molecular patterns identify distinct subclasses of myeloid neoplasia.
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Kewan T, Durmaz A, Bahaj W, Gurnari C, Terkawi L, Awada H, Ogbue OD, Ahmed R, Pagliuca S, Awada H, Kubota Y, Mori M, Ponvilawan B, Al-Share B, Patel BJ, Carraway HE, Scott J, Balasubramanian SK, Bat T, Madanat Y, Sekeres MA, Haferlach T, Visconte V, and Maciejewski JP
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- Humans, Mutation, Myelodysplastic Syndromes diagnosis, Myelodysplastic Syndromes genetics, Myelodysplastic Syndromes pathology, Myeloproliferative Disorders, Leukemia, Myeloid, Acute diagnosis, Leukemia, Myeloid, Acute genetics, Leukemia, Myeloid, Acute pathology
- Abstract
Genomic mutations drive the pathogenesis of myelodysplastic syndromes and acute myeloid leukemia. While morphological and clinical features have dominated the classical criteria for diagnosis and classification, incorporation of molecular data can illuminate functional pathobiology. Here we show that unsupervised machine learning can identify functional objective molecular clusters, irrespective of anamnestic clinico-morphological features, despite the complexity of the molecular alterations in myeloid neoplasia. Our approach reflects disease evolution, informed classification, prognostication, and molecular interactions. We apply machine learning methods on 3588 patients with myelodysplastic syndromes and secondary acute myeloid leukemia to identify 14 molecularly distinct clusters. Remarkably, our model shows clinical implications in terms of overall survival and response to treatment even after adjusting to the molecular international prognostic scoring system (IPSS-M). In addition, the model is validated on an external cohort of 412 patients. Our subclassification model is available via a web-based open-access resource ( https://drmz.shinyapps.io/mds_latent )., (© 2023. The Author(s).)
- Published
- 2023
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10. SARS-CoV-2 Vaccination IgG Antibody Responses in Patients with Hematologic Malignancies in a Myeloid Enriched Cohort: A Single Center Observation.
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Hoff FW, Goksu SY, Premnath N, Patel PA, Ikpefan R, Kaur G, Vusirikala M, Bat T, Chen W, Geethakumari PR, Anderson LD Jr, Awan FT, Collins RH, Weinberg OK, Muthukumar A, Chung SS, and Madanat YF
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- Humans, COVID-19 Vaccines, Immunoglobulin G, SARS-CoV-2, Antibody Formation, Vaccination, COVID-19 prevention & control, Hematologic Neoplasms
- Abstract
Objective: Patients diagnosed with hematologic malignancies are at increased risk for severe SARS-CoV-2 infection. We evaluated the serological IgG response following two doses of the SARS-CoV-2 vaccine in patients with hematologic malignancies., Methods: Patients treated at UT Southwestern Medical Center with a diagnosis of a myeloid or lymphoid neoplasm were included. SARS-CoV-2 vaccination response was defined as a positive quantifiable spike IgG antibody titer., Results: Sixty patients were included in the study and 60% were diagnosed with a myeloid neoplasm. The majority (85%) of the patients with a myeloid malignancy and 50% of the patients with a lymphoid malignancy mounted a serological response after receiving two doses of the vaccine., Conclusion: Vaccination should be offered irrespective of ongoing treatment or active disease. Findings require validation in a larger cohort of patients., (Copyright © Hoff et al. This article is available under a Creative Commons License (Attribution 4.0 International).)
- Published
- 2023
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11. Machine learning prediction for COVID-19 disease severity at hospital admission.
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Raman G, Ashraf B, Demir YK, Kershaw CD, Cheruku S, Atis M, Atis A, Atar M, Chen W, Ibrahim I, Bat T, and Mete M
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- Humans, Middle Aged, Retrospective Studies, Hospitalization, Hospitals, Patient Acuity, Machine Learning, COVID-19 diagnosis
- Abstract
Importance: Early prognostication of patients hospitalized with COVID-19 who may require mechanical ventilation and have worse outcomes within 30 days of admission is useful for delivering appropriate clinical care and optimizing resource allocation., Objective: To develop machine learning models to predict COVID-19 severity at the time of the hospital admission based on a single institution data., Design, Setting, and Participants: We established a retrospective cohort of patients with COVID-19 from University of Texas Southwestern Medical Center from May 2020 to March 2022. Easily accessible objective markers including basic laboratory variables and initial respiratory status were assessed using Random Forest's feature importance score to create a predictive risk score. Twenty-five significant variables were identified to be used in classification models. The best predictive models were selected with repeated tenfold cross-validation methods., Main Outcomes and Measures: Among patients with COVID-19 admitted to the hospital, severity was defined by 30-day mortality (30DM) rates and need for mechanical ventilation., Results: This was a large, single institution COVID-19 cohort including total of 1795 patients. The average age was 59.7 years old with diverse heterogeneity. 236 (13%) required mechanical ventilation and 156 patients (8.6%) died within 30 days of hospitalization. Predictive accuracy of each predictive model was validated with the 10-CV method. Random Forest classifier for 30DM model had 192 sub-trees, and obtained 0.72 sensitivity and 0.78 specificity, and 0.82 AUC. The model used to predict MV has 64 sub-trees and returned obtained 0.75 sensitivity and 0.75 specificity, and 0.81 AUC. Our scoring tool can be accessed at https://faculty.tamuc.edu/mmete/covid-risk.html ., Conclusions and Relevance: In this study, we developed a risk score based on objective variables of COVID-19 patients within six hours of admission to the hospital, therefore helping predict a patient's risk of developing critical illness secondary to COVID-19., (© 2023. The Author(s).)
- Published
- 2023
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12. Hepatitis C Infection Associated with Acquired Pure Red Cell Aplasia.
- Author
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Teague D, Gurnari C, Awada H, Maciejewski JP, Ibrahim I, and Bat T
- Abstract
Acquired pure red cell aplasia is a rare bone marrow failure disorder characterized by many underlying etiologies. The hallmark bone marrow feature is the near absence of erythroid precursors that otherwise exhibit normal cellularity, which has been attributed to both immune- and cellular-mediated mechanisms. Besides being merely speculative and considering the rarity of the disorder, the description of acquired pure red cell aplasia clinical associations represents a unique occasion to improve our current clinical knowledge of the disease, reveal clues on its pathogenesis, and guide therapeutic decisions. The varied clinical scenarios and common acquired pure red cell aplasia associated conditions (i.e., thymoma, T cell/NK-cell large granular lymphocyte leukemia, B cell dyscrasia) suggest a heterogeneity of pathogenic routes. Viral etiologies must always be considered and worked up in the initial assessment of newly diagnosed acquired pure red cell aplasia patients. In this report, we present two cases of hepatitis-C-related acquired pure red cell aplasia and successful use of anti-viral strategies in the achievement of a complete response.
- Published
- 2022
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13. Parafoveal acute middle maculopathy (PAMM) in sickle cell disease after discontinuation of hydroxyurea.
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Parikh P, Mohamed M, Bat T, Nero A, Wang A, Yates SG, and Ufret-Vincenty RL
- Abstract
Purpose: Paracentral acute middle maculopathy (PAMM) is a rare ophthalmologic emergency involving the intermediate and deep retinal capillary plexus that supply the retina's middle layers. This case report describes an episode of PAMM in a patient with sickle cell disease (SCD) to demonstrate the importance of early diagnosis, review potential pathophysiologic mechanisms, and finally discuss appropriate management in this patient population., Observations: A 33-year-old black female with SCD, who had recently discontinued disease-modifying therapy with hydroxyurea, presented with a central scotoma of the left eye. Examination showed superficial opacification and whitening of the temporal perifoveal macula. After an initial diagnosis of central retinal artery occlusion she was admitted for a stroke workup. MRI was negative for stroke, and the patient was discharged after undergoing a red blood cell exchange (RBCX). Follow-up exam and optical coherence tomography (OCT) findings were more consistent with PAMM., Conclusions and Importance: To our knowledge, this is the first report of PAMM after discontinuation of hydroxyurea in preparation for pregnancy. It highlights the importance of a multidisciplinary approach when treating peripartum patients with SCD and the need for further research regarding vaso-occlusive prophylactic agents and their effects in pregnancy to minimize morbidity during family planning., Competing Interests: The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (© 2022 The Authors.)
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- 2022
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14. SARS-CoV-2 infection associated with aplastic anemia and pure red cell aplasia.
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Lee NCJ, Patel B, Etra A, Bat T, Ibrahim IF, Vusirikala M, Chen M, Rosado F, Jaso JM, Young NS, and Chen W
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- Humans, SARS-CoV-2, Anemia, Aplastic complications, COVID-19 complications, Red-Cell Aplasia, Pure complications, Red-Cell Aplasia, Pure diagnosis
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- 2022
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15. "Ideal" parathyroid hormone in erythropoietin-stimulating agents-resistant anemia.
- Author
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Ashraf B, Bat T, Weinberg OK, Moe OW, and Ibrahim I
- Abstract
Erythropoietin-stimulating agents (ESAs) have revolutionized anemia treatment in end-stage renal disease (ESRD), but ESA resistance is increasingly identified. Secondary hyperparathyroidism (SHP) is one cause of ESA resistance. We describe a patient with ESA-resistant, transfusion-dependent anemia and mild SHP with remodeling and reticulin fibrosis on bone marrow biopsy, all of which resolved with stricter SHP management. We identified 64 patients with anemia, ESRD, and bone marrow biopsy. The parathyroid hormone (PTH) range for bony remodeling was 183-16,161.9 pg/ml versus 90.8-3283 pg/ml. The PTH range for fibrotic changes was 183-2487 pg/ml versus 90.8-16,161.9 pg/ml. We found no clear PTH range predictive for bone marrow changes., Competing Interests: All authors had no conflicts of interest to declare., (© 2021 The Authors. eJHaem published by British Society for Haematology and John Wiley & Sons Ltd.)
- Published
- 2021
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16. Clonal PIGA mosaicism and dynamics in paroxysmal nocturnal hemoglobinuria.
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Clemente MJ, Przychodzen B, Hirsch CM, Nagata Y, Bat T, Wlodarski MW, Radivoyevitch T, Makishima H, and Maciejewski JP
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- Adolescent, Adult, Aged, Aged, 80 and over, Child, Child, Preschool, Female, Humans, Immune System immunology, Male, Middle Aged, Mosaicism, Young Adult, Hemoglobinuria, Paroxysmal genetics, Membrane Proteins genetics, Mutation genetics
- Published
- 2018
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17. Functional Niche Competition Between Normal Hematopoietic Stem and Progenitor Cells and Myeloid Leukemia Cells.
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Glait-Santar C, Desmond R, Feng X, Bat T, Chen J, Heuston E, Mizukawa B, Mulloy JC, Bodine DM, Larochelle A, and Dunbar CE
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- Animals, Cell Line, Tumor, Hematopoietic Stem Cells pathology, Leukemia, Myeloid, Acute pathology, Mice, Hematopoietic Stem Cells metabolism, Leukemia, Myeloid, Acute metabolism, Tumor Microenvironment
- Abstract
Hematopoietic stem and progenitor cells (HSPCs) reside in a specialized niche that regulates their proliferative capacity and their fate. There is increasing evidence for similar roles of marrow niches on controlling the behavior of leukemic cells; however, whether normal hematopoietic stem cell (HSC) and leukemic cells reside in or functionally compete for the same marrow niche is unclear. We used the mixed lineage leukemia-AF9 (MLL-AF9) murine acute myeloid leukemia (AML) in a competitive repopulation model to investigate whether normal HSPC and leukemic cells functionally compete for the same marrow niches. Irradiated recipient mice were transplanted with fixed numbers of MLL-AF9 cells mixed with increasing doses of normal syngeneic whole bone marrow (WBM) or with purified HSPC (LSK). Survival was significantly increased and leukemic progression was delayed proportional to increasing doses of normal WBM or normal LSK cells in multiple independent experiments, with all doses of WBM or LSK cells studied above the threshold for rapid and complete hematopoietic reconstitution in the absence of leukemia. Confocal microscopy demonstrated nests of either leukemic cells or normal hematopoietic cells but not both in the marrow adjacent to endosteum. Early following transplantation, leukemic cells from animals receiving lower LSK doses were cycling more actively than in those receiving higher doses. These results suggest that normal HSPC and AML cells compete for the same functional niche. Manipulation of the niche could impact on response to antileukemic therapies, and the numbers of normal HSPC could impact on leukemia outcome, informing approaches to cell dose in the context of stem cell transplantation., (© 2015 AlphaMed Press.)
- Published
- 2015
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18. Human hematopoietic stem cells from mobilized peripheral blood can be purified based on CD49f integrin expression.
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Huntsman HD, Bat T, Cheng H, Cash A, Cheruku PS, Fu JF, Keyvanfar K, Childs RW, Dunbar CE, and Larochelle A
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- Animals, Cell Separation, Fetal Blood cytology, Granulocyte Colony-Stimulating Factor analysis, Granulocyte Colony-Stimulating Factor immunology, Hematopoietic Stem Cell Transplantation, Hematopoietic Stem Cells immunology, Humans, Integrin alpha6 analysis, Mice, Hematopoietic Stem Cell Mobilization, Hematopoietic Stem Cells cytology, Integrin alpha6 immunology
- Published
- 2015
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19. NTR/NRX define a new thioredoxin system in the nucleus of Arabidopsis thaliana cells.
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Marchal C, Delorme-Hinoux V, Bariat L, Siala W, Belin C, Saez-Vasquez J, Riondet C, and Reichheld JP
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- Arabidopsis genetics, Arabidopsis physiology, Arabidopsis Proteins chemistry, Arabidopsis Proteins genetics, Cytosol metabolism, Disulfides metabolism, Membrane Proteins genetics, Mutation, Nuclear Proteins chemistry, Nuclear Proteins genetics, Oxidation-Reduction, Oxidoreductases chemistry, Oxidoreductases genetics, Peroxiredoxins genetics, Phylogeny, Pollen physiology, Protein Multimerization, Saccharomyces cerevisiae genetics, Saccharomyces cerevisiae Proteins genetics, Sequence Homology, Nucleic Acid, Thioredoxin-Disulfide Reductase metabolism, Thioredoxins chemistry, Thioredoxins genetics, Arabidopsis cytology, Arabidopsis metabolism, Arabidopsis Proteins metabolism, Cell Nucleus metabolism, Nuclear Proteins metabolism, Oxidoreductases metabolism, Thioredoxins metabolism
- Abstract
Thioredoxins (TRX) are key components of cellular redox balance, regulating many target proteins through thiol/disulfide exchange reactions. In higher plants, TRX constitute a complex multigenic family whose members have been found in almost all cellular compartments. Although chloroplastic and cytosolic TRX systems have been largely studied, the presence of a nuclear TRX system has been elusive for a long time. Nucleoredoxins (NRX) are potential nuclear TRX found in most eukaryotic organisms. In contrast to mammals, which harbor a unique NRX, angiosperms generally possess multiple NRX organized in three subfamilies. Here, we show that Arabidopsis thaliana has two NRX genes (AtNRX1 and AtNRX2), respectively, belonging to subgroups I and III. While NRX1 harbors typical TRX active sites (WCG/PPC), NRX2 has atypical active sites (WCRPC and WCPPF). Nevertheless, both NRX1 and NRX2 have disulfide reduction capacities, although NRX1 alone can be reduced by the thioredoxin reductase NTRA. We also show that both NRX1 and NRX2 have a dual nuclear/cytosolic localization. Interestingly, we found that NTRA, previously identified as a cytosolic protein, is also partially localized in the nucleus, suggesting that a complete TRX system is functional in the nucleus. We show that NRX1 is mainly found as a dimer in vivo. nrx1 and nrx2 knockout mutant plants exhibit no phenotypic perturbations under standard growth conditions. However, the nrx1 mutant shows a reduced pollen fertility phenotype, suggesting a specific role of NRX1 at the haploid phase.
- Published
- 2014
- Full Text
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