50 results on '"Ambrose B"'
Search Results
2. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices
- Author
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Lerner, E, Barth, A, Hendrix, J, Ambrose, B, Birkedal, V, Blanchard, SC, Boerner, R, Chung, HS, Cordes, T, Craggs, TD, Deniz, AA, Diao, J, Fei, J, Gonzalez, RL, Gopich, I, Ha, T, Hanke, CA, Haran, G, Hatzakis, NS, Hohng, S, Hong, S-C, Hugel, T, Ingargiola, A, Joo, C, Kapanidis, AN, Kim, HD, Laurence, T, Lee, NK, Lee, T-H, Lemke, EA, Margeat, E, Michaelis, J, Michalet, X, Myong, S, Nettels, D, Peulen, T-O, Ploetz, E, Razvag, Y, Robb, NC, Schuler, B, Soleimaninejad, H, Tang, C, Vafabakhsh, R, Lamb, DC, Seidel, CAM, Weiss, S, Lerner, E, Barth, A, Hendrix, J, Ambrose, B, Birkedal, V, Blanchard, SC, Boerner, R, Chung, HS, Cordes, T, Craggs, TD, Deniz, AA, Diao, J, Fei, J, Gonzalez, RL, Gopich, I, Ha, T, Hanke, CA, Haran, G, Hatzakis, NS, Hohng, S, Hong, S-C, Hugel, T, Ingargiola, A, Joo, C, Kapanidis, AN, Kim, HD, Laurence, T, Lee, NK, Lee, T-H, Lemke, EA, Margeat, E, Michaelis, J, Michalet, X, Myong, S, Nettels, D, Peulen, T-O, Ploetz, E, Razvag, Y, Robb, NC, Schuler, B, Soleimaninejad, H, Tang, C, Vafabakhsh, R, Lamb, DC, Seidel, CAM, and Weiss, S
- Abstract
Single-molecule FRET (smFRET) has become a mainstream technique for studying biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by an ever-increasing number of groups has generated significant progress in sample preparation, measurement procedures, data analysis, algorithms and documentation. Several labs that employ smFRET approaches have joined forces to inform the smFRET community about streamlining how to perform experiments and analyze results for obtaining quantitative information on biomolecular structure and dynamics. The recent efforts include blind tests to assess the accuracy and the precision of smFRET experiments among different labs using various procedures. These multi-lab studies have led to the development of smFRET procedures and documentation, which are important when submitting entries into the archiving system for integrative structure models, PDB-Dev. This position paper describes the current 'state of the art' from different perspectives, points to unresolved methodological issues for quantitative structural studies, provides a set of 'soft recommendations' about which an emerging consensus exists, and lists openly available resources for newcomers and seasoned practitioners. To make further progress, we strongly encourage 'open science' practices.
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- 2021
3. CHARMM-DYES : Parameterization of fluorescent dyes for use with the CHARMM force field
- Author
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Shaw, R.A., Johnston-Wood, T., Ambrose, B., Craggs, T.D., and Hill, J.G.
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Quantitative Biology::Biomolecules - Abstract
We present CHARMM-compatible force field parameters for a series of fluorescent dyes from the Alexa, Atto, and Cy families, commonly used in Förster resonance energy transfer (FRET) experiments. These dyes are routinely used in experiments to resolve the dynamics of proteins and nucleic acids at the nanoscale. However, little is known about the accuracy of the theoretical approximations used in determining the dynamics from the spectroscopic data. Molecular dynamics simulations can provide valuable insights into these dynamics at an atomistic level, but this requires accurate parameters for the dyes. The complex structure of the dyes and the importance of this in determining their spectroscopic properties mean that parameters generated by analogy to existing parameters do not give meaningful results. Through validation relative to quantum chemical calculation and experiments, the new parameters are shown to significantly outperform those that can be generated automatically, giving better agreement in both the charge distributions and structural properties. These improvements, in particular with regard to orientation of the dipole moments on the dyes, are vital for accurate simulation of FRET processes.
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- 2020
4. The smfBox is an open-source platform for single-molecule FRET
- Author
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Ambrose, B., Baxter, J.M., Cully, J., Willmott, M., Steele, E.M., Bateman, B.C., Martin-Fernandez, M.L., Cadby, A., Shewring, J., Aaldering, M., and Craggs, T.D.
- Abstract
Single-molecule Förster Resonance Energy Transfer (smFRET) is a powerful technique capable of resolving both relative and absolute distances within and between structurally dynamic biomolecules. High instrument costs, and a lack of open-source hardware and acquisition software have limited smFRET’s broad application by non-specialists. Here, we present the smfBox, a cost-effective confocal smFRET platform, providing detailed build instructions, open-source acquisition software, and full validation, thereby democratising smFRET for the wider scientific community.
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- 2020
5. Commission on Property on Liability Insurance Terminology. Confusion Thrice Confounded
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Kelly, Ambrose B.
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- 1963
- Full Text
- View/download PDF
6. Initiative and Referendum
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Blake, Ambrose B.
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- 1907
- Full Text
- View/download PDF
7. Regional Conformational Flexibility Couples Substrate Specificity and Scissile Phosphate Diester Selectivity in Human Flap Endonuclease 1
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Bennet, I., Finger, L.D., Baxter, N.J., Ambrose, B., Hounslow, A., Thompson, M.J., Exell, J.C., Shahari, N.N.B.M., Craggs, T.D., Waltho, J.P., and Grasby, J.A.
- Abstract
Human flap endonuclease-1 (hFEN1) catalyzes the divalent metal ion-dependent removal of single-stranded DNA protrusions known as flaps during DNA replication and repair. Substrate selectivity involves passage of the 5′-terminus/flap through the arch and recognition of a single nucleotide 3′-flap by the α2–α3 loop. Using NMR spectroscopy, we show that the solution conformation of free and DNA-bound hFEN1 are consistent with crystal structures; however, parts of the arch region and α2–α3 loop are disordered without substrate. Disorder within the arch explains how 5′-flaps can pass under it. NMR and single-molecule FRET data show a shift in the conformational ensemble in the arch and loop region upon addition of DNA. Furthermore, the addition of divalent metal ions to the active site of the hFEN1–DNA substrate complex demonstrates that active site changes are propagated via DNA-mediated allostery to regions key to substrate differentiation. The hFEN1–DNA complex also shows evidence of millisecond timescale motions in the arch region that may be required for DNA to enter the active site. Thus, hFEN1 regional conformational flexibility spanning a range of dynamic timescales is crucial to reach the catalytically relevant ensemble.
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- 2018
8. State of the climate in 2016
- Author
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Aaron-Morrison, A. P., Ackerman, S. A., Adams, N. G., Adler, R. F., Albanil, A., Alfaro, E. J., Allan, R., Alves, L. M., Amador, J. A., Andreassen, L. M., Arendt, A., Arévalo, J., Arndt, D. S., Arzhanova, N. M., Aschan, M. M., Azorin-Molina, C., Banzon, V., Bardin, M. U., Barichivich, J., Baringer, M. O., Barreira, S., Baxter, S., Bazo, J., Becker, A., Bedka, K. M., Behrenfeld, M. J., Bell, G. D., Belmont, M., Benedetti, A., Bernhard, G., Berrisford, P., Berry, D. I., Bettolli, M. L., Bhatt, U. S., Bidegain, M., Bill, B. D., Billheimer, S., Bissolli, P., Blake, E. S., Blunden, J., Bosilovich, M. G., Boucher, O., Boudet, D., Box, J. E., Boyer, T., Braathen, G. O., Bromwich, D. H., Brown, R., Bulygina, O. N., Burgess, D., Calderón, B., Camargo, S. J., Campbell, J. D., Cappelen, J., Carrasco, G., Carter, B. R., Chambers, D. P., Chandler, E., Christiansen, H. H., Christy, J. R., Chung, D., Chung, E. S., Cinque, K., Clem, K. R., Coelho, C. A., Cogley, J. G., Coldewey-Egbers, M., Colwell, S., Cooper, O. R., Copland, L., Cosca, C. E., Cross, J. N., Crotwell, M. J., Crouch, J., Davis, S. M., Eyto, E., Jeu, R. A. M., Laat, J., Degasperi, C. L., Degenstein, D., Demircan, M., Derksen, C., Destin, D., Di Girolamo, L., Di Giuseppe, F., Diamond, H. J., Dlugokencky, E. J., Dohan, K., Dokulil, M. T., Dolgov, A. V., Dolman, A. J., Domingues, C. M., Donat, M. G., Dong, S., Dorigo, W. A., Dortch, Q., Doucette, G., Drozdov, D. S., Ducklow, H., Dunn, R. J. H., Durán-Quesada, A. M., Dutton, G. S., Ebrahim, A., Elkharrim, M., Elkins, J. W., Espinoza, J. C., Etienne-Leblanc, S., Evans, T. E., Famiglietti, J. S., Farrell, S., Fateh, S., Fausto, R. S., Fedaeff, N., Feely, R. A., Feng, Z., Fenimore, C., Fettweis, X., Fioletov, V. E., Flemming, J., Fogarty, C. T., Fogt, R. L., Folland, C., Fonseca, C., Fossheim, M., Foster, M. J., Fountain, A., Francis, S. D., Franz, B. A., Frey, R. A., Frith, S. M., Froidevaux, L., Ganter, C., Garzoli, S., Gerland, S., Gobron, N., Goldenberg, S. B., Gomez, R. S., Goni, G., Goto, A., Grooß, J. U., Gruber, A., Guard, C. C., Gugliemin, M., Gupta, S. K., Gutiérrez, J. M., Hagos, S., Hahn, S., Haimberger, L., Hakkarainen, J., Hall, B. D., Halpert, M. S., Hamlington, B. D., Hanna, E., Hansen, K., Hanssen-Bauer, I., Harris, I., Heidinger, A. K., Heikkilä, A., Heil, A., Heim, R. R., Hendricks, S., Hernández, M., Hidalgo, H. G., Hilburn, K., Ho, S. P. B., Holmes, R. M., Hu, Z. Z., Huang, B., Huelsing, H. K., Huffman, G. J., Hughes, C., Hurst, D. F., Ialongo, I., Ijampy, J. A., Ingvaldsen, R. B., Inness, A., Isaksen, K., Ishii, M., Jevrejeva, S., Jiménez, C., Jin, X., Johannesen, E., John, V., Johnsen, B., Johnson, B., Johnson, G. C., Jones, P. D., Joseph, A. C., Jumaux, G., Kabidi, K., Kaiser, J. W., Kato, S., Kazemi, A., Keller, L. M., Kendon, M., Kennedy, J., Kerr, K., Kholodov, A. L., Khoshkam, M., Killick, R., Kim, H., Kim, S. J., Kimberlain, T. B., Klotzbach, P. J., Knaff, J. A., Kobayashi, S., Kohler, J., Korhonen, J., Korshunova, N. N., Kovacs, K. M., Kramarova, N., Kratz, D. P., Kruger, A., Kruk, M. C., Kudela, R., Kumar, A., Lakatos, M., Lakkala, K., Lander, M. A., Landsea, C. W., Lankhorst, M., Lantz, K., Lazzara, M. A., Lemons, P., Leuliette, E., L’heureux, M., Lieser, J. L., Lin, I. I., Liu, H., Liu, Y., Locarnini, R., Loeb, N. G., Lo Monaco, C., Long, C. S., López Álvarez, L. A., Lorrey, A. M., Loyola, D., Lumpkin, R., Luo, J. J., Luojus, K., Lydersen, C., Lyman, J. M., Maberly, S. C., Maddux, B. C., Malheiros Ramos, A., Malkova, G. V., Manney, G., Marcellin, V., Marchenko, S. S., Marengo, J. A., Marra, J. J., Marszelewski, W., Martens, B., Martínez-Güingla, R., Massom, R. A., Mata, M. M., Mathis, J. T., May, L., Mayer, M., Mazloff, M., Mcbride, C., Mccabe, M. F., Mccarthy, M., Mcclelland, J. W., Mcgree, S., Mcvicar, T. R., Mears, C. A., Meier, W., Meinen, C. S., Mekonnen, A., Menéndez, M., Mengistu Tsidu, G., Menzel, W. P., Merchant, C. J., Meredith, M. P., Merrifield, M. A., Metzl, N., Minnis, P., Miralles, D. G., Mistelbauer, T., Mitchum, G. T., Monselesan, D., Monteiro, P., Montzka, S. A., Morice, C., Mote, T., Mudryk, L., Mühle, J., Mullan, A. B., Nash, E. R., Naveira-Garabato, A. C., Nerem, R. S., Newman, P. A., Nieto, J. J., Noetzli, J., O’neel, S., Osborn, T. J., Overland, J., Oyunjargal, L., Parinussa, R. M., Park, E. H., Parker, D., Parrington, M., Parsons, A. R., Pasch, R. J., Pascual-Ramírez, R., Paterson, A. M., Paulik, C., Pearce, P. R., Pelto, M. S., Peng, L., Perkins-Kirkpatrick, S. E., Perovich, D., Petropavlovskikh, I., Pezza, A. B., Phillips, D., Pinty, B., Pitts, M. C., Pons, M. R., Porter, A. O., Primicerio, R., Proshutinsky, A., Quegan, S., Quintana, J., Rahimzadeh, F., Rajeevan, M., Randriamarolaza, L., Razuvaev, V. N., Reagan, J., Reid, P., Reimer, C., Rémy, S., Renwick, J. A., Revadekar, J. V., Richter-Menge, J., Riffler, M., Rimmer, A., Rintoul, S., Robinson, D. A., Rodell, M., Rodríguez Solís, J. L., Romanovsky, V. E., Ronchail, J., Rosenlof, K. H., Roth, C., Rusak, J. A., Sabine, C. L., Sallée, J. B., Sánchez-Lugo, A., Santee, M. L., Sawaengphokhai, P., Sayouri, A., Scambos, T. A., Schemm, J., Schladow, S. G., Schmid, C., Schmid, M., Schmidtko, S., Schreck, C. J., Selkirk, H. B., Send, U., Sensoy, S., Setzer, A., Sharp, M., Shaw, A., Shi, L., Shiklomanov, A. I., Shiklomanov, N. I., Siegel, D. A., Signorini, S. R., Sima, F., Simmons, A. J., Smeets, C. J. P. P., Smith, S. L., Spence, J. M., Srivastava, A. K., Stackhouse, P. W., Stammerjohn, S., Steinbrecht, W., Stella, J. L., Stengel, M., Stennett-Brown, R., Stephenson, T. S., Strahan, S., Streletskiy, D. A., Sun-Mack, S., Swart, S., Sweet, W., Talley, L. D., Tamar, G., Tank, S. E., Taylor, M. A., Tedesco, M., Teubner, K., Thoman, R. L., Thompson, P., Thomson, L., Timmermans, M. L., Maxim Timofeyev, Tirnanes, J. A., Tobin, S., Trachte, K., Trainer, V. L., Tretiakov, M., Trewin, B. C., Trotman, A. R., Tschudi, M., As, D., Wal, R. S. W., A, R. J., Schalie, R., Schrier, G., Werf, G. R., Meerbeeck, C. J., Velicogna, I., Verburg, P., Vigneswaran, B., Vincent, L. A., Volkov, D., Vose, R. S., Wagner, W., Wåhlin, A., Wahr, J., Walsh, J., Wang, C., Wang, J., Wang, L., Wang, M., Wang, S. H., Wanninkhof, R., Watanabe, S., Weber, M., Weller, R. A., Weyhenmeyer, G. A., Whitewood, R., Wijffels, S. E., Wilber, A. C., Wild, J. D., Willett, K. M., Williams, M. J. M., Willie, S., Wolken, G., Wong, T., Wood, E. F., Woolway, R. I., Wouters, B., Xue, Y., Yamada, R., Yim, S. Y., Yin, X., Young, S. H., Yu, L., Zahid, H., Zambrano, E., Zhang, P., Zhao, G., Zhou, L., Ziemke, J. R., Love-Brotak, S. E., Gilbert, K., Maycock, T., Osborne, S., Sprain, M., Veasey, S. W., Ambrose, B. J., Griffin, J., Misch, D. J., Riddle, D. B., Young, T., Macias Fauria, M, Blunden, J, Arndt, D, Earth and Climate, Faculty of Earth and Life Sciences, Clinical Developmental Psychology, Climate Change and Landscape Dynamics, and Molecular Cell Physiology
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Meteor (satellite) ,Atmospheric Science ,010504 meteorology & atmospheric sciences ,0208 environmental biotechnology ,02 engineering and technology ,01 natural sciences ,020801 environmental engineering ,Geography ,13. Climate action ,Climatology ,SDG 13 - Climate Action ,SDG 14 - Life Below Water ,0105 earth and related environmental sciences - Abstract
In 2016, the dominant greenhouse gases released into Earth's atmosphere-carbon dioxide, methane, and nitrous oxide-continued to increase and reach new record highs. The 3.5 +/- 0.1 ppm rise in global annual mean carbon dioxide from 2015 to 2016 was the largest annual increase observed in the 58-year measurement record. The annual global average carbon dioxide concentration at Earth's surface surpassed 400 ppm (402.9 +/- 0.1 ppm) for the first time in the modern atmospheric measurement record and in ice core records dating back as far as 800000 years. One of the strongest El Nino events since at least 1950 dissipated in spring, and a weak La Nina evolved later in the year. Owing at least in part to the combination of El Nino conditions early in the year and a long-term upward trend, Earth's surface observed record warmth for a third consecutive year, albeit by a much slimmer margin than by which that record was set in 2015. Above Earth's surface, the annual lower troposphere temperature was record high according to all datasets analyzed, while the lower stratospheric temperature was record low according to most of the in situ and satellite datasets. Several countries, including Mexico and India, reported record high annual temperatures while many others observed near-record highs. A week-long heat wave at the end of April over the northern and eastern Indian peninsula, with temperatures surpassing 44 degrees C, contributed to a water crisis for 330 million people and to 300 fatalities. In the Arctic the 2016 land surface temperature was 2.0 degrees C above the 1981-2010 average, breaking the previous record of 2007, 2011, and 2015 by 0.8 degrees C, representing a 3.5 degrees C increase since the record began in 1900. The increasing temperatures have led to decreasing Arctic sea ice extent and thickness. On 24 March, the sea ice extent at the end of the growth season saw its lowest maximum in the 37-year satellite record, tying with 2015 at 7.2% below the 1981-2010 average. The September 2016 Arctic sea ice minimum extent tied with 2007 for the second lowest value on record, 33% lower than the 1981-2010 average. Arctic sea ice cover remains relatively young and thin, making it vulnerable to continued extensive melt. The mass of the Greenland Ice Sheet, which has the capacity to contribute similar to 7 m to sea level rise, reached a record low value. The onset of its surface melt was the second earliest, after 2012, in the 37-year satellite record. Sea surface temperature was record high at the global scale, surpassing the previous record of 2015 by about 0.01 degrees C. The global sea surface temperature trend for the 21st century-to-date of +0.162 degrees C decade(-1) is much higher than the longer term 1950-2016 trend of +0.100 degrees C decade(-1). Global annual mean sea level also reached a new record high, marking the sixth consecutive year of increase. Global annual ocean heat content saw a slight drop compared to the record high in 2015. Alpine glacier retreat continued around the globe, and preliminary data indicate that 2016 is the 37th consecutive year of negative annual mass balance. Across the Northern Hemisphere, snow cover for each month from February to June was among its four least extensive in the 47-year satellite record. Continuing a pattern below the surface, record high temperatures at 20-m depth were measured at all permafrost observatories on the North Slope of Alaska and at the Canadian observatory on northernmost Ellesmere Island. In the Antarctic, record low monthly surface pressures were broken at many stations, with the southern annular mode setting record high index values in March and June. Monthly high surface pressure records for August and November were set at several stations. During this period, record low daily and monthly sea ice extents were observed, with the November mean sea ice extent more than 5 standard deviations below the 1981-2010 average. These record low sea ice values contrast sharply with the record high values observed during 2012-14. Over the region, springtime Antarctic stratospheric ozone depletion was less severe relative to the 1991-2006 average, but ozone levels were still low compared to pre-1990 levels. Closer to the equator, 93 named tropical storms were observed during 2016, above the 1981-2010 average of 82, but fewer than the 101 storms recorded in 2015. Three basins-the North Atlantic, and eastern and western North Pacific-experienced above-normal activity in 2016. The Australian basin recorded its least active season since the beginning of the satellite era in 1970. Overall, four tropical cyclones reached the Saffir-Simpson category 5 intensity level. The strong El Nino at the beginning of the year that transitioned to a weak La Nina contributed to enhanced precipitation variability around the world. Wet conditions were observed throughout the year across southern South America, causing repeated heavy flooding in Argentina, Paraguay, and Uruguay. Wetter-than-usual conditions were also observed for eastern Europe and central Asia, alleviating the drought conditions of 2014 and 2015 in southern Russia. In the United States, California had its first wetter-than-average year since 2012, after being plagued by drought for several years. Even so, the area covered by drought in 2016 at the global scale was among the largest in the post-1950 record. For each month, at least 12% of land surfaces experienced severe drought conditions or worse, the longest such stretch in the record. In northeastern Brazil, drought conditions were observed for the fifth consecutive year, making this the longest drought on record in the region. Dry conditions were also observed in western Bolivia and Peru; it was Bolivia's worst drought in the past 25 years. In May, with abnormally warm and dry conditions already prevailing over western Canada for about a year, the human-induced Fort McMurray wildfire burned nearly 590000 hectares and became the costliest disaster in Canadian history, with $3 billion (U.S. dollars) in insured losses.
- Published
- 2017
9. the professional loss liability of fire protection engineers
- Author
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kelly, ambrose b.
- Published
- 1979
10. report of the committee on international insurance law
- Author
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Kelly, Ambrose B.
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- 1973
11. The governance of urban green spaces in selected EU-cities : Policies, Practices, Actors, Topics
- Author
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Buizer, I.M., Elands, B.H.M., Mattijssen, T.J.M., Jagt, A.P.N., Ambrose, B., Geroházi, E., and Santos, E.
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management of urban green areas ,Alterra - Centrum Landschap ,public green areas ,groenbeheer ,WASS ,stadsomgeving ,urban environment ,Forest and Nature Conservation Policy ,groene infrastructuur ,Landscape Centre ,green infrastructure ,governance ,participation ,Bos- en Natuurbeleid ,openbaar groen ,participatie - Abstract
In a time of continuing urbanization, there is an increasing focus on developing attractive and healthy urban environments. Green spaces, ranging from woodlands and parks to allotment gardens and green roofs, provide a range of ecosystem services that contribute to better cities (Lovell and Taylor, 2013). The Green Infrastructure and Urban Biodiversity for Sustainable Urban Development and the Green Economy project (GREEN SURGE in brief), funded under the EU’s 7th Framework Programme for research, will identify, develop and test ways of linking green spaces, biodiversity, people and the green economy in order to meet the major urban challenges related to land use conflicts, climate change adaptation, demographic changes and human health and well being. The contents of this report are based on work conducted in Work Package 6, one of the eight Work Packages of GREEN SURGE. Work Package 6 focuses on governance arrangements for urban green spaces. In this report, we discuss the findings of the GREEN SURGE Work Package 6 Tier 1 research on identifying and conceptualising innovative participatory governance arrangements in regards to the management of urban green infrastructure.
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- 2015
12. Code-switching in Botswana’s ESL Classrooms: A Paradox of Linguistic Policy in Education
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Ambrose B. Chimbganda and Tsaona S. Mokgwathi
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Pride ,Social distance ,media_common.quotation_subject ,Identity (social science) ,Context (language use) ,National language ,Code-switching ,Linguistics ,Pedagogy ,Ethnography ,Mathematics education ,Sociology ,Official language ,media_common - Abstract
Code-switching in the classroom is known to take place across a wide range of subjects in multilingual settings in Africa and, indeed, throughout the world; yet it is often regarded pejoratively by some educational policy makers. This article looks at code-switching (CS) in Botswana’s senior secondary schools within the context of the country’s language-in-education policy, which states that English is the official language of learning and teaching while Setswana is the national language used for identity, unity and national pride. The data are derived from an ethnographic study conducted at four high schools in the north-eastern part of the country, which is uniquely multilingual. The findings indicate that code-switching from English to Setswana is quite prevalent in content subjects, and is used as a pedagogic resource to clarify the knowledge of the subject matter and to reduce the social distance between the teacher and learners. From the findings, it is suggested that code-switching in ESL classrooms in Botswana should be recognized not only as a communicative strategy for instruction, but also as a way of creating classroom warmth and friendliness.
- Published
- 2012
13. Diagnostic analysis of the Canary Current System of West Africa: the need for a paradigm shift to proactive natural resource management
- Author
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Isimemen Osemwegie, Katelene da Cruz Delgado, Abdul Wahid Arimiyaw, Ambrose Bockarie Kanneh, Christian Tchègoun Todota, Amy Faye, and Felicia Olufunmilayo Akinyemi
- Subjects
Anthropogenic disturbance ,Canary Current Large Marine Ecosystem ,Climate change ,Land-based pollution ,Productivity ,Oceanography ,GC1-1581 - Abstract
Large exports of land-based contaminants to the ocean exacerbate the effects of climate change, pollute ocean waters, disrupt biogeochemical cycles, harm marine organisms, and consequently jeopardise food security and the livelihoods of ocean-dependent communities. The Canary Current Large Marine Ecosystem (CCLME) is characterised by a mix of the Atlantic Ocean basin waters, reverse flow from the Mediterranean Sea, and inland waters from adjacent countries. This biodiversity-rich ecosystem is a source of ecosystem goods and services that provide sustenance for populations in the coastal states of West Africa and beyond. However, with the ocean surface warming, ocean productivity and fisheries’ outputs have declined across multiple trophic levels. Therefore, in this diagnostic study based on a systematic literature review (publications from 2009 to 2020), we (a) provide an integrative assessment of the CCLME with the exception of Morocco, in the context of the modular large marine ecosystem framework using the categories ‘environmental’ (productivity, fish and fisheries, pollution, and ecosystem health) and ‘non-environmental’ (socioeconomic and governance), and (b) identify knowledge gaps and data scarce regions. The key drivers of change in the CCLME were identified as fishing pressure, land-based pollution, coastal habitat loss, and climate change. Productivity, land-based pollution, and ecosystem health were priority areas for data collection in the CCLME, with data deficiencies particularly apparent in The Gambia and Guinea. Therefore, to mitigate further degradation and accelerate progress toward sustainable management of the CCLME, research should be conducted in these priority areas of data deficiency. Furthermore, as most drivers of change in this ecosystem are related to weak management and a lack of regulatory enforcement, we recommend effective implementation, monitoring, and enforcement of existing national and transboundary regulations, as well as ecosystem-based human-centred management approaches, as proactive strategies for decoupling anthropogenic disturbances from climate change and optimising the productivity of the CCLME.
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- 2022
- Full Text
- View/download PDF
14. Ozdravljenik. U blizini agitatora. Novi organon. Politika. Religijski napredak.
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Ambrose Bierce and Stefan Elezović
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Social Sciences ,History of scholarship and learning. The humanities ,AZ20-999 - Abstract
OZDRAVLJENIK Šta! "Van opasnosti?" Može li uobražena dama Ili nagnuti farisej prestati klevetati? Neće li me izdaja više milovati po ruci, Niti mržnja vrebati me oko vrata? – Nezahvalnost, uz otkazane beneficije, Nije zatvorila puni dlan da napravi pesnicu? Hoće li se zavist ne uzvraćati Za vrline na koje se bilo uzaludno ugledati?
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- 2022
15. Understanding the role of incentives for achieving and sustaining viral suppression: A qualitative sub-study of a financial incentives trial in Uganda.
- Author
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Carol S Camlin, Kara Marson, Alex Ndyabakira, Monica Getahun, Devy Emperador, Ambrose Byamukama, Dalsone Kwarisiima, Harsha Thirumurthy, and Gabriel Chamie
- Subjects
Medicine ,Science - Abstract
BackgroundViral suppression among people living with HIV (PLHIV) is essential for protecting health and preventing HIV transmission, yet globally, rates of viral suppression are sub-optimal. Interventions to improve HIV prevention and care cascade outcomes remain vital. Financial incentives hold promise for improving these outcomes, yet to date, clinical trial results have been mixed.MethodsThis qualitative sub-study, embedded in a trial (NCT02890459) in Uganda to test whether incentives are effective for achieving viral suppression in PLHIV, sought to enhance our understanding of the factors that influence this outcome. Forty-nine (n = 49) PLHIV, purposely sampled to balance across gender, study arm, and viral suppression status, were interviewed to explore barriers and motivations for care engagement, adherence, and viral suppression, and attributions for decision-making, including perceived influence of incentives on behaviors.ResultsWhile many participants with undetectable viral load (VL) who received incentives said the incentives motivated their ART adherence, others expressed intrinsic motivation for adherence. All felt that incentives reduced burdens of transport costs, lost income due to time spent away from work, and food insecurity. Incentives may have activated attention and memory for some, as excitement about anticipating incentives helped them adhere to medication schedules. In comparison, participants who were randomized to receive incentives but had detectable VL faced a wider range, complexity and severity of challenges to care engagement. Notably, their narratives included more accounts of poor treatment in clinics, food insecurity, and severe forms of stigma. With or without incentives, adherence was reinforced through experiencing restored health due to ART, social support (especially from partners), and good quality counseling and clinical care.ConclusionsIn considering why incentives sometimes fail to achieve behavior change, it may be helpful to attend to the full set of factors- psychological, interpersonal, social and structural- that militate against the behavior change required to achieve behavioral outcomes. To be effective, incentives may need to be combined with other interventions to address the spectrum of barriers to care engagement.
- Published
- 2022
- Full Text
- View/download PDF
16. Leveraging incentives to increase HIV testing uptake among men: qualitative insights from rural Uganda
- Author
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Alex Ndyabakira, Monica Getahun, Ambrose Byamukama, Devy Emperador, Stella Kabageni, Kara Marson, Dalsone Kwarisiima, Gabriel Chamie, Harsha Thirumurthy, Diane Havlir, Moses R. Kamya, and Carol S. Camlin
- Subjects
HIV testing ,Men ,Economic incentives ,Lottery ,Loss aversion ,Sub Saharan Africa ,Public aspects of medicine ,RA1-1270 - Abstract
Abstract Background Few studies have explored how economic incentives influence behavioral outcomes. This study aimed to identify pathways of action of an incentives-based intervention to increase men’s participation in HIV testing. Methods The qualitative study was embedded in a randomized-controlled trial that compared effectiveness of gain-framed, loss-framed and lottery-based incentives to increase HIV testing among men. Following testing at a community health campaign, 60 in-depth interviews were conducted with men systematically sampled on the basis of age, incentive group, and campaign attendance. Data were coded deductively and inductively for thematic content analysis. Results Incentives addressed men’s structural, interpersonal and individual-level barriers to testing: offered at convenient locations, incentives offset costs of testing, in lost wages, which are exacerbated when livelihoods required mobility. Interpersonal barriers included anticipated stigma/fear of disclosure, social obligations, and negative peer influences. Providing incentives in public settings provided “social proof” that prizes could be won, and facilitated social support and positive norms by promoting testing with trusted others. Incentives had little influence when men appraised prize values to be low, disbelieved they would win a prize, or were already intrinsically motivated to test. Yet, incentives provided a behavioral ‘cue to action’ for many men who perceived themselves to be susceptible to HIV and perceived HIV disease to be severe, acting as secondary motivator for testing that “sweetened the deal”. Conclusion Incentives can be an important ‘lever’ to promote men’s healthy behaviors in resource-poor settings. HIV testing in convenient, public settings, when paired with incentives, provides multiple pathways to stimulate men’s testing uptake. Trial registration Registered with ClinicalTrials.gov on 08/10/2016, ID: NCT02890459. The first participant was enrolled on 11th April 2016.
- Published
- 2019
- Full Text
- View/download PDF
17. The need for pollution insurance: illusion versus reality
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Kelly, Ambrose B.
- Subjects
liability for environmental damages ,Liability insurance -- Planning ,Business ,Insurance - Published
- 1982
18. How we got where we are
- Author
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Kelly, Ambrose B.
- Subjects
Property and casualty insurance -- History ,Liability insurance -- History ,Business ,Insurance - Abstract
All of us, in our viewpoints and convictions, are strongly influenced by our past experience. This article reflects the 50 years I have spent working in all aspects of non-life [...]
- Published
- 1984
19. Insurance against oil pollution of the seas
- Author
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Kelly, Ambrose B.
- Subjects
Liability for oil pollution damages ,Liability insurance -- Contracts ,Oil pollution of the sea -- Economic aspects ,Marine insurance -- Contracts ,Business ,Insurance - Abstract
Current federal guidelines on financial responsibility for oil spills.
- Published
- 1981
20. Prospects of Emerging Comprehensive Economic Cooperation Agreement between India and Thailand.
- Author
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Raj, P. Sundar and Ambrose, B.
- Subjects
INTERNATIONAL economic integration ,INTERNATIONAL economic relations ,INTERNATIONAL relations - Abstract
In this study, the authors try to examine India's Comprehensive Economic Cooperation Agreement (CECA) with Thailand. This is an inquiry about IndoThailand bilateral trade relations. Time series data for the period between 1997 and 2012 has been taken for the analysis. Here the authors use the well-known Gravity model for sixteen year data analysis. This technique proved to be successful in explaining India's bilateral trade flows to Thailand. The analysis reveals that GDP and Population positively influence trade volume, while distance (dummy) variable shows a negative relationship towards bilateral trade. This paper concludes that India and Thailand have greater unrealized trade potential which can be realized through comprehensive economic cooperation. [ABSTRACT FROM AUTHOR]
- Published
- 2014
21. The determinants of crop yields in Uganda: what is the role of climatic and non-climatic factors?
- Author
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Terence Epule Epule, James D. Ford, Shuaib Lwasa, Benon Nabaasa, and Ambrose Buyinza
- Subjects
Crop yields ,Climatic drivers ,Non-climatic drivers ,Uganda ,Agriculture ,Nutrition. Foods and food supply ,TX341-641 - Abstract
Abstract Background It is widely accepted that crop yields will be affected by climate change. However, the role played by climate in affecting crop yields vis-a-vis non-climatic stresses, is often unclear, limiting decision choices around efforts to promote increased production in light of multiple stresses. Results This study quantifies the role of climatic and non-climatic factors affecting multiple crop yields in Uganda, utilizing a systematic approach which involves the use of a two-stage multiple linear regression to identify and characterize the most important drivers of crop yield, examine the location of the key drivers, identify the socio-economic implications of the drivers and identify policy options to enhance agricultural production. We find that non-climatic drivers of crop yields such as forest area dynamics (p = 0.012), wood fuel (p = 0.032) and usage of tractors (0.041) are more important determinants of crop yields than climatic drivers such as precipitation, temperature and CO2 emissions from forest clearance. Climatic drivers are found to multiply existing risks facing production, the significance of which is determined by variability and inadequate distribution of precipitation over the crop growing seasons. Conclusion The significance and validity of these results is observed in an f-statistic of 50 for the final optimized model when compared to the initial model with an f-statistic of 19.3. Research and agricultural policies have to be streamlined to include not only the climatic elements but also the non-climatic drivers of global, regional and national agricultural systems.
- Published
- 2018
- Full Text
- View/download PDF
22. The Performance of Exports and Imports in India Under Post-Liberalisation Era.
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Parthiban, P. and Ambrose, B.
- Subjects
BALANCE of trade ,EXPORTS ,IMPORTS ,FINANCIAL liberalization ,INTERNATIONAL trade ,ECONOMICS - Abstract
The article presents a study which examined exports and imports, and their impact on the balance of trade in India from 1995-1996 to 2009-2010. The commodities exported and imported have increased after the liberalization policy was implemented in 1991, as shown by balance of trade and the share of the Indian economy in the total global trade. The commodities traded are petroleum products, minerals, chemicals, textile products, gems and jewelry, engineering and manufactured goods.
- Published
- 2013
23. Knowledge and practice of testicular self-examination among secondary students at Ntare School in Mbarara District, South western Uganda
- Author
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Catherine Atuhaire, Ambrose Byamukama, Rosaline Yumumkah Cumber, and Samuel Nambile Cumber
- Subjects
knowledge ,practice ,testicular ,self-examination ,uganda ,Medicine - Abstract
INTRODUCTION: Testicular self-examination (TSE) is a screening technique that involves inspection of the appearance and palpation of the testes to detect any changes from the normal. Globally, the incidence of cancer has increased among which is testicular cancer (TC). Data on this topic among male secondary school adolescents in Uganda is limited therefore this study sought to assess the knowledge and practice of testicular self-examination among secondary students at Ntare School, Mbarara District in south western Uganda. The objective of the study is to assess the knowledge and practice of testicular self-examination among secondary students at Ntare School in Mbarara district, south western Uganda. METHODS: we conducted a descriptive cross-sectional quantitative study among 165 students. Recruitment was made using simple random sampling technique. Respondents were selected among advanced level (A level) male students studying at Ntare School in Mbarara district, south western Uganda. Structured self-administered questionnaires was used for data collection.
- Published
- 2019
- Full Text
- View/download PDF
24. TO WHAT EXTENT SHALL SECONDARY SCHOOL PHYSICS BE MATHEMATICAL?
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Warren, Ambrose B.
- Published
- 1932
- Full Text
- View/download PDF
25. TO WHAT EXTENT SHALL SECONDARY SCHOOL PHYSICS BE MATHEMATICAL?
- Author
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Ambrose B. Warren
- Subjects
Mathematics (miscellaneous) ,History and Philosophy of Science ,Physics and Astronomy (miscellaneous) ,Mathematics education ,Engineering (miscellaneous) ,Education - Published
- 1932
26. Weather Forecasts for Pastoralism in a Changing Climate: Navigating the Data Space in North Eastern Uganda
- Author
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Shuaib Lwasa, Ambrose Buyinza, and Benon Nabaasa
- Subjects
pastoralism ,climate shocks ,weather forecasts ,resilience ,traditional systems ,Science (General) ,Q1-390 - Abstract
Efforts to support the building of resilient pastoralism have been stepped up in Uganda through a number of activities. One of the activity is the provision of seasonal and medium-range climate forecasts to enable decisions concerning livestock herding. Seasonal weather forecasts are critical but there are challenges of timeliness and usability of the forecasts. The challenges are associated with the multiplicity of information sources, methods for data integration and dissemination channels. Institutions including public and Civil Society Organizations usually invest in collecting weather and other data which should be accessible. Often times this data remains hoarded necessitating other organizations to collect similar data. The inter-institutional relations notwithstanding, the lack of data sharing leads to minimal data available for open access. This paper illustrates that this challenge can be addressed by using combined multiple methods to elicit data on weather and other biophysical conditions for pastoralism in Karamoja. In this paper we additionally analyse the opportunities and challenges of using multiple sources of pastoral-relevant data to couple with weather information in support of herding decisions. Building resilient pastoralism that utilizes pasture and water availability will have to utilize available data. It is evident that more robust approaches for data sharing at global, regional and local levels are needed to understand how pastoralists can respond to climate shocks and changes. The paper illustrates the use of a multifaceted-methods approach including open data to develop climate forecast information for risk-reduction oriented information for decision-making. Integration of this data provides insights on how pastoralists have long adapted to a variable and changing climate, the methods and processes of adaptation to losses and damages from the climate shocks.
- Published
- 2017
- Full Text
- View/download PDF
27. A Compilation of Computer Programs in Flight Vehicle Technology 1968-1969
- Author
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AIR FORCE FLIGHT DYNAMICS LAB WRIGHT-PATTERSON AFB OH, Nutt, Ambrose B., AIR FORCE FLIGHT DYNAMICS LAB WRIGHT-PATTERSON AFB OH, and Nutt, Ambrose B.
- Abstract
The report is a compilation of computer programs useful in the design of flight vehicles. Technical domains covered include the following: structures, aerodynamics, vehicle dynamics, flight control, environmental control, crew escape and retardation, and landing gear subsystems., Supplement to report dated Apr 1968, AD835368.
- Published
- 1970
28. Approaches to Long Range Forecasting - A Symposium Held at Alamogordo, New Mexico, 29-30 April 1969.
- Author
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OFFICE OF AEROSPACE STUDIES KIRTLAND AFB NM, Bennett, James P., Harris, Noland D., Taeuber, Richard C., Paterson, Robert W., Nutt, Ambrose B., OFFICE OF AEROSPACE STUDIES KIRTLAND AFB NM, Bennett, James P., Harris, Noland D., Taeuber, Richard C., Paterson, Robert W., and Nutt, Ambrose B.
- Abstract
Table of Contents: Simulating Alternative Economic Futures; Forecasting Military Requirements: A Critical Viewpoint of the Industry's Approach; Election Night Forecasting; Forecasting Highway Demand; Technological Forecasting in an R&D Laboratory; Producing the First Navy Technological Forecast; Forecasting International Relations: A Proposed Investigation of Three-Mode Factor Analysis; Forecasting Solar Events.
- Published
- 1969
29. The FRET-based structural dynamics challenge -- community contributions to consistent and open science practices
- Author
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Lerner, E., Ambrose, B., Barth, A., Birkedal, V., Blanchard, S.C., Borner, R., Cordes, T., Craggs, T.D., Ha, T., Haran, G., Hugel, T., Ingargiola, A., Kapanidis, A., Lamb, D.C., Laurence, T., Lee, N.K., Lemke, E.A., Margeat, E., Michaelis, J., Michalet, X., Nettels, D., Peulen, T.-O., Schuler, B., Seidel, C.A.M., So-leimaninejad, H., and Weiss, S.
- Subjects
Quantitative Biology - Biomolecules ,Biological Physics (physics.bio-ph) ,FOS: Biological sciences ,FOS: Physical sciences ,Biomolecules (q-bio.BM) ,Physics - Biological Physics - Abstract
Single-molecule F\"{o}rster resonance energy transfer (smFRET) has become a mainstream technique for probing biomolecular structural dynamics. The rapid and wide adoption of the technique by an ever-increasing number of groups has generated many improvements and variations in the technique itself, in methods for sample preparation and characterization, in analysis of the data from such experiments, and in analysis codes and algorithms. Recently, several labs that employ smFRET have joined forces to try to bring the smFRET community together in adopting a consensus on how to perform experiments and analyze results for achieving quantitative structural information. These recent efforts include multi-lab blind-tests to assess the accuracy and precision of smFRET between different labs using different procedures, the formal assembly of the FRET community and development of smFRET procedures to be considered for entries in the wwPDB. Here we delve into the different approaches and viewpoints in the field. This position paper describes the current "state-of-the field", points to unresolved methodological issues for quantitative structural studies, provides a set of 'soft recommendations' about which an emerging consensus exists, and a list of resources that are openly available. To make further progress, we strongly encourage 'open science' practices. We hope that this position paper will provide a roadmap for newcomers to the field, as well as a reference for seasoned practitioners.
30. 4530 Ambrose B. Reid to his mother Letitia M. F. Reid, 1865
- Author
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Reid, Ambrose B. and Reid, Ambrose B.
- Abstract
Letter from Ambrose B. Reid to his mother Letitia M. F. Reid.
31. Coping with crisis; insurance markets vary with nations' scenery
- Author
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Kelly, Ambrose B.
- Subjects
Liability insurance -- International aspects ,Business ,Insurance - Published
- 1986
32. Insurers should improve loss-control efforts
- Author
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Kelly, Ambrose B.
- Subjects
risk management -- Methods ,Insurance industry -- Services ,Business ,Insurance - Abstract
Loss control has a proven history of saving resources and is a valuable insurance company service.
- Published
- 1984
33. Commission on Property on Liability Insurance Terminology. Confusion Thrice Confounded
- Author
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Ambrose B. Kelly
- Subjects
Property (philosophy) ,medicine ,Liability insurance ,Commission ,Business ,medicine.symptom ,Confusion ,Terminology ,Law and economics - Published
- 1963
34. Current Developments and Problems in Property Insurance
- Author
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Ambrose B. Kelly
- Subjects
Actuarial science ,Business ,Current (fluid) ,Property insurance - Published
- 1960
35. High-frequency ultrasound for intraoperative margin assessments in breast conservation surgery: a feasibility study
- Author
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Hart Vern P, Goodrich Jeffrey B, Ambrose Brady J, Sorensen Kristina M, Ellefson Christina L, Factor Rachel E, Doyle Timothy E, Jensen Scott C, Patel Hemang, and Neumayer Leigh A
- Subjects
Neoplasms. Tumors. Oncology. Including cancer and carcinogens ,RC254-282 - Abstract
Abstract Background In addition to breast imaging, ultrasound offers the potential for characterizing and distinguishing between benign and malignant breast tissues due to their different microstructures and material properties. The aim of this study was to determine if high-frequency ultrasound (20-80 MHz) can provide pathology sensitive measurements for the ex vivo detection of cancer in margins during breast conservation surgery. Methods Ultrasonic tests were performed on resected margins and other tissues obtained from 17 patients, resulting in 34 specimens that were classified into 15 pathology categories. Pulse-echo and through-transmission measurements were acquired from a total of 57 sites on the specimens using two single-element 50-MHz transducers. Ultrasonic attenuation and sound speed were obtained from time-domain waveforms. The waveforms were further processed with fast Fourier transforms to provide ultrasonic spectra and cepstra. The ultrasonic measurements and pathology types were analyzed for correlations. The specimens were additionally re-classified into five pathology types to determine specificity and sensitivity values. Results The density of peaks in the ultrasonic spectra, a measure of spectral structure, showed significantly higher values for carcinomas and precancerous pathologies such as atypical ductal hyperplasia than for normal tissue. The slopes of the cepstra for non-malignant pathologies displayed significantly greater values that differentiated them from the normal and malignant tissues. The attenuation coefficients were sensitive to fat necrosis, fibroadenoma, and invasive lobular carcinoma. Specificities and sensitivities for differentiating pathologies from normal tissue were 100% and 86% for lobular carcinomas, 100% and 74% for ductal carcinomas, 80% and 82% for benign pathologies, and 80% and 100% for fat necrosis and adenomas. Specificities and sensitivities were also determined for differentiating each pathology type from the other four using a multivariate analysis. The results yielded specificities and sensitivities of 85% and 86% for lobular carcinomas, 85% and 74% for ductal carcinomas, 100% and 61% for benign pathologies, 84% and 100% for fat necrosis and adenomas, and 98% and 80% for normal tissue. Conclusions Results from high-frequency ultrasonic measurements of human breast tissue specimens indicate that characteristics in the ultrasonic attenuation, spectra, and cepstra can be used to differentiate between normal, benign, and malignant breast pathologies.
- Published
- 2011
- Full Text
- View/download PDF
36. Evaluation of the complexation behaviour among functionalized diphenyl viologens and cucurbit[7] and [8]urils.
- Author
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Ambrose B, Sathyaraj G, and Kathiresan M
- Abstract
The complexation behaviour of Diphenyl viologens (DPVs) with Cucurbit[n]urils (CB[n]) was evaluated in detail and the results were reported. In this work, we present the synthesis of various DPVs functionalised with electron withdrawing and electron donating groups (EWGs & EDGs) and investigate their complexation behaviour with CB[7] and CB [8]. Carboxylic acid functionalized DPV's (DPV-COOH) complexation with CB[8] gives additional insights, i.e., indicates hydrogen bonding plays an effective role in the complexation. The formation of a 2:2 quaternary complex of DPV-COOH/CB[8] under neutral pH conditions was supported by various analytical techniques. The complexation of DPVs with CB[7] specifies that irrespective of the functional group attached, they all form a 1:2 ternary complex, but the findings elaborate that the pattern followed in the complexation depends on the EW or EDG attached to the DPVs. The competition experiments conducted between functionalized DPVs and CB[7], CB[8] shows that they have more affinity towards CB[8] than CB[7] because of the better macrocyclic confinement effect of CB[8], as confirmed using UV-Vis spectroscopy. The binding affinity among EWG and EDG functionalised DPVs with CB[8] concludes EDG functionalised DPVs show better affinity towards CB[8], because they can form a charge transfer complex inside the CB[8] cavity. Exploring these host-guest interactions in more complex biological or environmental settings and studying their impact on the functionality of DPVs could be an exciting avenue for future research., (© 2024. The Author(s).)
- Published
- 2024
- Full Text
- View/download PDF
37. The genome of the Wollemi pine, a critically endangered "living fossil" unchanged since the Cretaceous, reveals extensive ancient transposon activity.
- Author
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Stevenson DW, Ramakrishnan S, de Santis Alves C, Coelho LA, Kramer M, Goodwin S, Ramos OM, Eshel G, Sondervan VM, Frangos S, Zumajo-Cardona C, Jenike K, Ou S, Wang X, Lee YP, Loke S, Rossetto M, McPherson H, Nigris S, Moschin S, Little DP, Katari MS, Varala K, Kolokotronis SO, Ambrose B, Croft LJ, Coruzzi GM, Schatz M, McCombie WR, and Martienssen RA
- Abstract
We present the genome of the living fossil, Wollemia nobilis , a southern hemisphere conifer morphologically unchanged since the Cretaceous. Presumed extinct until rediscovery in 1994, the Wollemi pine is critically endangered with less than 60 wild adults threatened by intensifying bushfires in the Blue Mountains of Australia. The 12 Gb genome is among the most contiguous large plant genomes assembled, with extremely low heterozygosity and unusual abundance of DNA transposons. Reduced representation and genome re-sequencing of individuals confirms a relictual population since the last major glacial/drying period in Australia, 120 ky BP. Small RNA and methylome sequencing reveal conservation of ancient silencing mechanisms despite the presence of thousands of active and abundant transposons, including some transferred horizontally to conifers from arthropods in the Jurassic. A retrotransposon burst 8-6 my BP coincided with population decline, possibly as an adaptation enhancing epigenetic diversity. Wollemia , like other conifers, is susceptible to Phytophthora , and a suite of defense genes, similar to those in loblolly pine, are targeted for silencing by sRNAs in leaves. The genome provides insight into the earliest seed plants, while enabling conservation efforts., Competing Interests: Competing interests: The authors declare no competing interests.
- Published
- 2023
- Full Text
- View/download PDF
38. Enhanced Electrochemical Performance of Hybrid Solid Polymer Electrolytes Encompassing Viologen for All-Solid-State Lithium Polymer Batteries.
- Author
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Angulakhsmi N, Ambrose B, Sathya S, Kathiresan M, Lingua G, Ferrari S, Gowd EB, Wang W, Shen C, Elia GA, Gerbaldi C, and Stephan AM
- Abstract
Hybrid solid polymer electrolytes (HSPE) comprising poly(ethylene oxide) (PEO), LiTFSI, barium titanate (BaTiO
3 ), and viologen are prepared by a facile hot press. The physical properties of the HSPE membranes are studied by using small-angle and wide-angle X-ray scattering, thermogravimetric analysis, differential scanning calorimetry, and tensile strength. The prepared hybrid solid polymer electrolytes are also investigated by means of ionic conductivity and transport number measurements. The employed analyses collectively reveal that each additive in the PEO host contributes to a specific property: LiTFSI is essential in providing ionic species, while BaTiO3 and viologen enhance the thermal stability, ionic conductivity, and transport number. The enhanced value in the Li+ -transport number of HSPE are presumably attributed to the electrostatic attraction of TFSI anions and the positive charges of viologen. Synergistically, the added BaTiO3 and viologen improve the electrochemical properties of HSPE for the applications in all-solid-state-lithium polymer batteries., Competing Interests: The authors declare no competing financial interest., (© 2023 The Authors. Published by American Chemical Society.)- Published
- 2023
- Full Text
- View/download PDF
39. A new twist on PIFE: photoisomerisation-related fluorescence enhancement.
- Author
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Ploetz E, Ambrose B, Barth A, Börner R, Erichson F, Kapanidis AN, Kim HD, Levitus M, Lohman TM, Mazumder A, Rueda DS, Steffen FD, Cordes T, Magennis SW, and Lerner E
- Abstract
PIFE was first used as an acronym for protein-induced fluorescence enhancement, which refers to the increase in fluorescence observed upon the interaction of a fluorophore, such as a cyanine, with a protein. This fluorescence enhancement is due to changes in the rate of cis/trans photoisomerisation. It is clear now that this mechanism is generally applicable to interactions with any biomolecule and, in this review, we propose that PIFE is thereby renamed according to its fundamental working principle as photoisomerisation-related fluorescence enhancement, keeping the PIFE acronym intact. We discuss the photochemistry of cyanine fluorophores, the mechanism of PIFE, its advantages and limitations, and recent approaches to turn PIFE into a quantitative assay. We provide an overview of its current applications to different biomolecules and discuss potential future uses, including the study of protein-protein interactions, protein-ligand interactions and conformational changes in biomolecules.
- Published
- 2023
40. FRET-based dynamic structural biology: Challenges, perspectives and an appeal for open-science practices.
- Author
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Lerner E, Barth A, Hendrix J, Ambrose B, Birkedal V, Blanchard SC, Börner R, Sung Chung H, Cordes T, Craggs TD, Deniz AA, Diao J, Fei J, Gonzalez RL, Gopich IV, Ha T, Hanke CA, Haran G, Hatzakis NS, Hohng S, Hong SC, Hugel T, Ingargiola A, Joo C, Kapanidis AN, Kim HD, Laurence T, Lee NK, Lee TH, Lemke EA, Margeat E, Michaelis J, Michalet X, Myong S, Nettels D, Peulen TO, Ploetz E, Razvag Y, Robb NC, Schuler B, Soleimaninejad H, Tang C, Vafabakhsh R, Lamb DC, Seidel CA, and Weiss S
- Subjects
- Molecular Biology instrumentation, Single Molecule Imaging instrumentation, Fluorescence Resonance Energy Transfer methods, Molecular Biology methods, Single Molecule Imaging methods
- Abstract
Single-molecule FRET (smFRET) has become a mainstream technique for studying biomolecular structural dynamics. The rapid and wide adoption of smFRET experiments by an ever-increasing number of groups has generated significant progress in sample preparation, measurement procedures, data analysis, algorithms and documentation. Several labs that employ smFRET approaches have joined forces to inform the smFRET community about streamlining how to perform experiments and analyze results for obtaining quantitative information on biomolecular structure and dynamics. The recent efforts include blind tests to assess the accuracy and the precision of smFRET experiments among different labs using various procedures. These multi-lab studies have led to the development of smFRET procedures and documentation, which are important when submitting entries into the archiving system for integrative structure models, PDB-Dev. This position paper describes the current 'state of the art' from different perspectives, points to unresolved methodological issues for quantitative structural studies, provides a set of 'soft recommendations' about which an emerging consensus exists, and lists openly available resources for newcomers and seasoned practitioners. To make further progress, we strongly encourage 'open science' practices., Competing Interests: EL, AB, JH, BA, VB, SB, RB, HS, TC, TC, AD, JD, JF, RG, IG, TH, CH, GH, NH, SH, SH, TH, AI, CJ, AK, HK, TL, NL, TL, EL, EM, JM, XM, SM, DN, TP, EP, YR, NR, BS, HS, CT, RV, DL, CS, SW No competing interests declared
- Published
- 2021
- Full Text
- View/download PDF
41. The smfBox is an open-source platform for single-molecule FRET.
- Author
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Ambrose B, Baxter JM, Cully J, Willmott M, Steele EM, Bateman BC, Martin-Fernandez ML, Cadby A, Shewring J, Aaldering M, and Craggs TD
- Abstract
Single-molecule Förster Resonance Energy Transfer (smFRET) is a powerful technique capable of resolving both relative and absolute distances within and between structurally dynamic biomolecules. High instrument costs, and a lack of open-source hardware and acquisition software have limited smFRET's broad application by non-specialists. Here, we present the smfBox, a cost-effective confocal smFRET platform, providing detailed build instructions, open-source acquisition software, and full validation, thereby democratising smFRET for the wider scientific community.
- Published
- 2020
- Full Text
- View/download PDF
42. Estimating the Potential Public Health Impact of Prohibiting Characterizing Flavors in Cigars throughout the US.
- Author
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L Rostron B, G Corey C, Holder-Hayes E, and K Ambrose B
- Subjects
- Cigar Smoking trends, Humans, United States epidemiology, Cigar Smoking mortality, Flavoring Agents analysis, Public Health, Tobacco Products statistics & numerical data
- Abstract
Flavored cigar use is common among cigar smokers, particularly those at younger ages. Several US localities have implemented policies restricting the sale of flavored tobacco products, including cigars. We estimated the population health benefits of removal of flavored cigars throughout the US in terms of reductions in cigar smoking-attributable mortality due to increased cessation and reductions in cigar smoking prevalence due to decreased initiation and continuing use. Monte Carlo simulation was used to estimate possible ranges for these values. We used published estimates of cigar use and attributable mortality in the US, as well as prior study conclusions on the effect of local and national flavor restriction policies. We estimated that removal of flavored cigars would result in approximately 800 (90% prediction interval = 400-1200) fewer cigar smoking-attributable deaths in the US each year and 112,000 fewer cigar smokers (90% prediction interval = 76,000-139,000) in each cohort of 18 year olds. The removal of characterizing flavors in cigars sold in the US is thus projected to have substantial public health benefits over time.
- Published
- 2019
- Full Text
- View/download PDF
43. Comparison of Nicotine and Toxicant Exposure in Users of Electronic Cigarettes and Combustible Cigarettes.
- Author
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Goniewicz ML, Smith DM, Edwards KC, Blount BC, Caldwell KL, Feng J, Wang L, Christensen C, Ambrose B, Borek N, van Bemmel D, Konkel K, Erives G, Stanton CA, Lambert E, Kimmel HL, Hatsukami D, Hecht SS, Niaura RS, Travers M, Lawrence C, and Hyland AJ
- Subjects
- Adult, Biomarkers urine, Cross-Sectional Studies, Female, Humans, Male, Metals urine, Middle Aged, Polycyclic Aromatic Hydrocarbons urine, United States epidemiology, Inhalation Exposure analysis, Nicotine urine, Nitrosamines urine, Smoking epidemiology, Smoking urine, Vaping epidemiology, Vaping urine
- Abstract
Importance: Use of electronic cigarettes (e-cigarettes) is increasing. Measures of exposure to known tobacco-related toxicants among e-cigarette users will inform potential health risks to individual product users., Objectives: To estimate concentrations of tobacco-related toxicants among e-cigarette users and compare these biomarker concentrations with those observed in combustible cigarette users, dual users, and never tobacco users., Design, Setting, and Participants: A population-based, longitudinal cohort study was conducted in the United States in 2013-2014. Cross-sectional analysis was performed between November 4, 2016, and October 5, 2017, of biomarkers of exposure to tobacco-related toxicants collected by the Population Assessment of Tobacco and Health Study. Participants included adults who provided a urine sample and data on tobacco use (N = 5105)., Exposures: The primary exposure was tobacco use, including current exclusive e-cigarette users (n = 247), current exclusive cigarette smokers (n = 2411), and users of both products (dual users) (n = 792) compared with never tobacco users (n = 1655)., Main Outcomes and Measures: Geometric mean concentrations of 50 individual biomarkers from 5 major classes of tobacco product constituents were measured: nicotine, tobacco-specific nitrosamines (TSNAs), metals, polycyclic aromatic hydrocarbons (PAHs), and volatile organic compounds (VOCs)., Results: Of the 5105 participants, most were aged 35 to 54 years (weighted percentage, 38%; 95% CI, 35%-40%), women (60%; 95% CI, 59%-62%), and non-Hispanic white (61%; 95% CI, 58%-64%). Compared with exclusive e-cigarette users, never users had 19% to 81% significantly lower concentrations of biomarkers of exposure to nicotine, TSNAs, some metals (eg, cadmium and lead), and some VOCs (including acrylonitrile). Exclusive e-cigarette users showed 10% to 98% significantly lower concentrations of biomarkers of exposure, including TSNAs, PAHs, most VOCs, and nicotine, compared with exclusive cigarette smokers; concentrations were comparable for metals and 3 VOCs. Exclusive cigarette users showed 10% to 36% lower concentrations of several biomarkers than dual users. Frequency of cigarette use among dual users was positively correlated with nicotine and toxicant exposure., Conclusions and Relevance: Exclusive use of e-cigarettes appears to result in measurable exposure to known tobacco-related toxicants, generally at lower levels than cigarette smoking. Toxicant exposure is greatest among dual users, and frequency of combustible cigarette use is positively correlated with tobacco toxicant concentration. These findings provide evidence that using combusted tobacco cigarettes alone or in combination with e-cigarettes is associated with higher concentrations of potentially harmful tobacco constituents in comparison with using e-cigarettes alone.
- Published
- 2018
- Full Text
- View/download PDF
44. Regional conformational flexibility couples substrate specificity and scissile phosphate diester selectivity in human flap endonuclease 1.
- Author
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Bennet IA, Finger LD, Baxter NJ, Ambrose B, Hounslow AM, Thompson MJ, Exell JC, Shahari NNBM, Craggs TD, Waltho JP, and Grasby JA
- Subjects
- Catalytic Domain, Cations, Divalent chemistry, DNA chemistry, DNA metabolism, Flap Endonucleases metabolism, Fluorescence Resonance Energy Transfer, Humans, Models, Molecular, Nuclear Magnetic Resonance, Biomolecular, Phosphates chemistry, Protein Conformation, Protein Structure, Secondary, Substrate Specificity, Flap Endonucleases chemistry
- Abstract
Human flap endonuclease-1 (hFEN1) catalyzes the divalent metal ion-dependent removal of single-stranded DNA protrusions known as flaps during DNA replication and repair. Substrate selectivity involves passage of the 5'-terminus/flap through the arch and recognition of a single nucleotide 3'-flap by the α2-α3 loop. Using NMR spectroscopy, we show that the solution conformation of free and DNA-bound hFEN1 are consistent with crystal structures; however, parts of the arch region and α2-α3 loop are disordered without substrate. Disorder within the arch explains how 5'-flaps can pass under it. NMR and single-molecule FRET data show a shift in the conformational ensemble in the arch and loop region upon addition of DNA. Furthermore, the addition of divalent metal ions to the active site of the hFEN1-DNA substrate complex demonstrates that active site changes are propagated via DNA-mediated allostery to regions key to substrate differentiation. The hFEN1-DNA complex also shows evidence of millisecond timescale motions in the arch region that may be required for DNA to enter the active site. Thus, hFEN1 regional conformational flexibility spanning a range of dynamic timescales is crucial to reach the catalytically relevant ensemble.
- Published
- 2018
- Full Text
- View/download PDF
45. Selaginella Genome Analysis - Entering the "Homoplasy Heaven" of the MADS World.
- Author
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Gramzow L, Barker E, Schulz C, Ambrose B, Ashton N, Theißen G, and Litt A
- Abstract
In flowering plants, arguably the most significant transcription factors regulating development are MADS-domain proteins, encoded by Type I and Type II MADS-box genes. Type II genes are divided into the MIKC(C) and MIKC* groups. In angiosperms, these types and groups play distinct roles in the development of female gametophytes, embryos, and seeds (Type I); vegetative and floral tissues in sporophytes (MIKC(C)); and male gametophytes (MIKC*), but their functions in other plants are largely unknown. The complete set of MADS-box genes has been described for several angiosperms and a moss, Physcomitrella patens. Our examination of the complete genome sequence of a lycophyte, Selaginella moellendorffii, revealed 19 putative MADS-box genes (13 Type I, 3 MIKC(C), and 3 MIKC*). Our results suggest that the most recent common ancestor of vascular plants possessed at least two Type I and two Type II genes. None of the S. moellendorffii MIKC(C) genes were identified as orthologs of any floral organ identity genes. This strongly corroborates the view that the clades of floral organ identity genes originated in a common ancestor of seed plants after the lineage that led to lycophytes had branched off, and that expansion of MIKC(C) genes in the lineage leading to seed plants facilitated the evolution of their unique reproductive organs. The number of MIKC* genes and the ratio of MIKC* to MIKC(C) genes is lower in S. moellendorffii and angiosperms than in P. patens, correlated with reduction of the gametophyte in vascular plants. Our data indicate that Type I genes duplicated and diversified independently within lycophytes and seed plants. Our observations on MADS-box gene evolution echo morphological evolution since the two lineages of vascular plants appear to have arrived independently at similar body plans. Our annotation of MADS-box genes in S. moellendorffii provides the basis for functional studies to reveal the roles of this crucial gene family in basal vascular plants.
- Published
- 2012
- Full Text
- View/download PDF
46. Thoracoscopic correction of a congenital persistent right aortic arch in a young cat.
- Author
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Plesman R, Johnson M, Rurak S, Ambrose B, and Shmon C
- Subjects
- Animals, Cats, Esophageal Stenosis diagnosis, Esophageal Stenosis etiology, Esophageal Stenosis surgery, Esophageal Stenosis veterinary, Female, Treatment Outcome, Aorta, Thoracic abnormalities, Aorta, Thoracic surgery, Cat Diseases diagnosis, Cat Diseases surgery, Thoracoscopy veterinary
- Abstract
A 9-week-old kitten was diagnosed with a congenital vascular ring anomaly by means of an esophageal contrast study. At 6 mo of age, a non-selective vascular study was used to diagnose a persistent right aortic arch (PRAA). Left-sided thoracoscopic surgery was performed, using a Liga-Sure vessel sealant device to seal and transect the ligamentum arteriosum.
- Published
- 2011
47. Disruption of signaling in a fungal-grass symbiosis leads to pathogenesis.
- Author
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Eaton CJ, Cox MP, Ambrose B, Becker M, Hesse U, Schardl CL, and Scott B
- Subjects
- Anthocyanins biosynthesis, DNA Transposable Elements, Epichloe enzymology, Epichloe physiology, Fungal Proteins genetics, Gene Deletion, Gene Expression Regulation, Fungal, Gene Expression Regulation, Plant, Gene Library, Lolium growth & development, Lolium metabolism, Mitogen-Activated Protein Kinase 1 genetics, Plant Growth Regulators biosynthesis, RNA, Messenger genetics, RNA, Plant genetics, Reactive Oxygen Species metabolism, Sequence Analysis, RNA, Epichloe genetics, Fungal Proteins metabolism, Gene Expression Profiling, Lolium microbiology, Mitogen-Activated Protein Kinase 1 metabolism, Symbiosis
- Abstract
Symbiotic associations between plants and fungi are a dominant feature of many terrestrial ecosystems, yet relatively little is known about the signaling, and associated transcriptome profiles, that define the symbiotic metabolic state. Using the Epichloë festucae-perennial ryegrass (Lolium perenne) association as a model symbiotic experimental system, we show an essential role for the fungal stress-activated mitogen-activated protein kinase (sakA) in the establishment and maintenance of this mutualistic interaction. Deletion of sakA switches the fungal interaction with the host from mutualistic to pathogenic. Infected plants exhibit loss of apical dominance, premature senescence, and dramatic changes in development, including the formation of bulb-like structures at the base of tillers that lack anthocyanin pigmentation. A comparison of the transcriptome of wild-type and sakA associations using high-throughput mRNA sequencing reveals dramatic changes in fungal gene expression consistent with the transition from restricted to proliferative growth, including a down-regulation of several clusters of secondary metabolite genes and up-regulation of a large set of genes that encode hydrolytic enzymes and transporters. Analysis of the plant transcriptome reveals up-regulation of host genes involved in pathogen defense and transposon activation as well as dramatic changes in anthocyanin and hormone biosynthetic/responsive gene expression. These results highlight the fine balance between mutualism and antagonism in a plant-fungal interaction and the power of deep mRNA sequencing to identify candidate sets of genes underlying the symbiosis.
- Published
- 2010
- Full Text
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48. Patterns of expression of a lolitrem biosynthetic gene in the Epichloë festucae-perennial ryegrass symbiosis.
- Author
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May KJ, Bryant MK, Zhang X, Ambrose B, and Scott B
- Subjects
- Germination, Glucuronidase metabolism, Hyphae cytology, Hyphae enzymology, Indole Alkaloids, Lolium cytology, Lolium enzymology, Promoter Regions, Genetic, Seedlings enzymology, Seedlings microbiology, Seeds enzymology, Seeds microbiology, Transcription Initiation Site, Transformation, Genetic, Ascomycota genetics, Gene Expression Regulation, Fungal, Genes, Fungal, Lolium genetics, Lolium microbiology, Mycotoxins biosynthesis, Symbiosis genetics
- Abstract
Lolitrem B is synthesized by Epichloë festucae in associations with Pooid grasses. A complex cluster of at least 10 genes (ltm genes) is required for its synthesis. An early step in this pathway is catalyzed by ltmM, a symbiosis-expressed gene. PltmM-gusA reporter gene analysis was used to monitor ltmM gene expression patterns in planta. The minimum promoter length required for high-level gusA expression in infected seedlings is in the range of 480 to 782 bp. gusA was expressed by the endophyte in all infected vegetative plant tissues and in epiphyllous hyphae. Spikelets from reproductive tillers were analyzed at different developmental stages. During pre-anthesis, gusA expression was observed in all infected floral organs except the immature gynoecium. In post-anthesis florets, gene expression occurred almost exclusively in the gynoecium. Expression of gusA by the endophyte was observed in germinating seeds 24 h postimbibition and seedlings older than 6 days postimbibition in hyphae from the mesocotyl to the tip of the emerging first leaf. This work provides a detailed analysis of the spatial and temporal expression patterns of a symbiosis-expressed gene in planta.
- Published
- 2008
- Full Text
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49. Molecular and genetic analyses of the silky1 gene reveal conservation in floral organ specification between eudicots and monocots.
- Author
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Ambrose BA, Lerner DR, Ciceri P, Padilla CM, Yanofsky MF, and Schmidt RJ
- Subjects
- Adaptor Protein Complex alpha Subunits, Adaptor Proteins, Vesicular Transport, Biological Evolution, Cloning, Molecular methods, DEFICIENS Protein, DNA Transposable Elements, DNA-Binding Proteins genetics, Homeodomain Proteins genetics, MADS Domain Proteins, Membrane Proteins genetics, Models, Biological, Morphogenesis genetics, Mutation, Plant Proteins genetics, Plant Shoots anatomy & histology, Time Factors, Tissue Distribution, Transcription Factors genetics, Zea mays anatomy & histology, Genes, Homeobox, Genes, Plant, Magnoliopsida genetics, Plant Shoots genetics, Zea mays genetics
- Abstract
The degree to which the eudicot-based ABC model of flower organ identity applies to the other major subclass of angrosperms, the monocots, has yet to be fully explored. We cloned silky1 (si1), a male sterile mutant of Zea mays that has homeotic conversions of stamens into carpels and lodicules into palea/lemma-like structures. Our studies indicate that si1 is a monocot B function MADS box gene. Moreover, the si1 zag1 double mutant produces a striking spikelet phenotype where normal glumes enclose reiterated palea/lemma-like organs. These studies indicate that B function gene activity is conserved among monocots as well as eudicots. In addition, they provide compelling developmental evidence for recognizing lodicules as modified petals and, possibly, palea and lemma as modified sepals.
- Published
- 2000
- Full Text
- View/download PDF
50. Diversification of C-function activity in maize flower development.
- Author
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Mena M, Ambrose BA, Meeley RB, Briggs SP, Yanofsky MF, and Schmidt RJ
- Subjects
- Alleles, Amino Acid Sequence, DNA Transposable Elements, DNA-Binding Proteins chemistry, Gene Expression, MADS Domain Proteins, Microscopy, Electron, Scanning, Molecular Sequence Data, Morphogenesis, Mutation, Phenotype, Plant Proteins chemistry, RNA, Messenger genetics, RNA, Messenger metabolism, RNA, Plant genetics, RNA, Plant metabolism, Zea mays ultrastructure, DNA-Binding Proteins genetics, Genes, Plant, Plant Proteins genetics, Transcription Factors genetics, Zea mays genetics, Zea mays growth & development
- Abstract
The Arabidopsis gene AGAMOUS is required for male and female reproductive organ development and for floral determinacy. Reverse genetics allowed the isolation of a transposon-induced mutation in ZAG1, the maize homolog of AGAMOUS. ZAG1 mutants exhibited a loss of determinacy, but the identity of reproductive organs was largely unaffected. This suggested a redundancy in maize sex organ specification that led to the identification and cloning of a second AGAMOUS homolog, ZMM2, that has a pattern of expression distinct from that of ZAG1. C-function organ identity in maize (as defined by the A, B, C model of floral organ development) may therefore be orchestrated by two closely related genes, ZAG1 and ZMM2, with overlapping but nonidentical activities.
- Published
- 1996
- Full Text
- View/download PDF
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