5 results on '"Go MJ"'
Search Results
2. Shared genetic regulatory networks for cardiovascular disease and type 2 diabetes in multiple populations of diverse ethnicities in the United States.
- Author
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null, null, Shu, Le, Zhang, Guanglin, Kurt, Zeyneb, Zhao, Yuqi, Yang, Xia, Luo, Xi, Lusis, Aldons J., Liu, Simin, Chan, Kei Hang K., Huan, Tianxiao, Levy, Daniel, Codoni, Veronica, Trégouët, David-Alexandre, Yang, Jun, and Wilson, James G.
- Subjects
GENE regulatory networks ,CARDIOVASCULAR diseases ,TYPE 2 diabetes ,HEALTH care reform ,ETHNIC groups ,HEALTH care reform -- Social aspects ,HEALTH - Abstract
Cardiovascular diseases (CVD) and type 2 diabetes (T2D) are closely interrelated complex diseases likely sharing overlapping pathogenesis driven by aberrant activities in gene networks. However, the molecular circuitries underlying the pathogenic commonalities remain poorly understood. We sought to identify the shared gene networks and their key intervening drivers for both CVD and T2D by conducting a comprehensive integrative analysis driven by five multi-ethnic genome-wide association studies (GWAS) for CVD and T2D, expression quantitative trait loci (eQTLs), ENCODE, and tissue-specific gene network models (both co-expression and graphical models) from CVD and T2D relevant tissues. We identified pathways regulating the metabolism of lipids, glucose, and branched-chain amino acids, along with those governing oxidation, extracellular matrix, immune response, and neuronal system as shared pathogenic processes for both diseases. Further, we uncovered 15 key drivers including HMGCR, CAV1, IGF1 and PCOLCE, whose network neighbors collectively account for approximately 35% of known GWAS hits for CVD and 22% for T2D. Finally, we cross-validated the regulatory role of the top key drivers using in vitro siRNA knockdown, in vivo gene knockout, and two Hybrid Mouse Diversity Panels each comprised of >100 strains. Findings from this in-depth assessment of genetic and functional data from multiple human cohorts provide strong support that common sets of tissue-specific molecular networks drive the pathogenesis of both CVD and T2D across ethnicities and help prioritize new therapeutic avenues for both CVD and T2D. [ABSTRACT FROM AUTHOR]
- Published
- 2017
- Full Text
- View/download PDF
3. Genetics of Type 2 Diabetes in U.S. Hispanic/Latino Individuals: Results From the Hispanic Community Health Study/Study of Latinos (HCHS/SOL).
- Author
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Qibin Qi, Stilp, Adrienne M., Sofer, Tamar, Jee-Young Moon, Hidalgo, Bertha, Szpiro, Adam A., Tao Wang, Ng, Maggie C. Y., Xiuqing Guo, Chen, Yii-Der Ida, Taylor, Kent D., Aviles-Santa, M. Larissa, Papanicolaou, George, Pankow, James S., Schneiderman, Neil, Laurie, Cathy C., Rotter, Jerome I., Kaplan, Robert C., Qi, Qibin, and Moon, Jee-Young
- Subjects
GENOMES ,TYPE 2 diabetes ,OVERWEIGHT persons ,SINGLE nucleotide polymorphisms ,DIABETES ,TYPE 2 diabetes complications ,OBESITY complications ,BLACK people ,DISEASE susceptibility ,GENETIC polymorphisms ,GENETIC techniques ,HISPANIC Americans ,MEMBRANE proteins ,PROTEINS ,REGRESSION analysis ,RESEARCH funding ,RISK assessment ,CASE-control method ,HAPLOTYPES ,SEQUENCE analysis ,GENOTYPES - Abstract
Few genome-wide association studies (GWAS) of type 2 diabetes (T2D) have been conducted in U.S. Hispanics/Latinos of diverse backgrounds who are disproportionately affected by diabetes. We conducted a GWAS in 2,499 T2D case subjects and 5,247 control subjects from six Hispanic/Latino background groups in the Hispanic Community Health Study/Study of Latinos (HCHS/SOL). Our GWAS identified two known loci (TCF7L2 and KCNQ1) reaching genome-wide significance levels. Conditional analysis on known index single nucleotide polymorphisms (SNPs) indicated an additional independent signal at KCNQ1, represented by an African ancestry-specific variant, rs1049549 (odds ratio 1.49 [95% CI 1.27-1.75]). This association was consistent across Hispanic/Latino background groups and replicated in the MEta-analysis of type 2 DIabetes in African Americans (MEDIA) Consortium. Among 80 previously known index SNPs at T2D loci, 66 SNPs showed consistency with the reported direction of associations and 14 SNPs significantly generalized to the HCHS/SOL. A genetic risk score based on these 80 index SNPs was significantly associated with T2D (odds ratio 1.07 [1.06-1.09] per risk allele), with a stronger effect observed in nonobese than in obese individuals. Our study identified a novel independent signal suggesting an African ancestry-specific allele at KCNQ1 for T2D. Associations between previously identified loci and T2D were generally shown in a large cohort of U.S. Hispanics/Latinos. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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4. Type 2 Diabetes Genetic Predisposition, Obesity, and All-Cause Mortality Risk in the U.S.: A Multiethnic Analysis.
- Author
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Leong, Aaron, Porneala, Bianca, Dupuis, Josée, Florez, Jose C., and Meigs, James B.
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TYPE 2 diabetes ,OBESITY ,MORTALITY ,BODY mass index ,ETHNICITY ,CARDIOVASCULAR disease related mortality ,ALLELES ,CARDIOVASCULAR diseases ,DISEASE susceptibility ,ETHNIC groups ,GENETIC polymorphisms ,GENETIC techniques ,LONGITUDINAL method ,RESEARCH funding ,TUMORS ,LOGISTIC regression analysis ,SOCIOECONOMIC factors ,DISEASE prevalence - Abstract
Objective: Type 2 diabetes (T2D) is associated with increased mortality in ethnically diverse populations, although the extent to which this association is genetically determined is unknown. We sought to determine whether T2D-related genetic variants predicted all-cause mortality, even after accounting for BMI, in the Third National Health and Nutrition Examination Survey.Research Design and Methods: We modeled mortality risk using a genetic risk score (GRS) from a weighted sum of risk alleles at 38 T2D-related single nucleotide polymorphisms. In age-, sex-, and BMI-adjusted logistic regression models, accounting for the complex survey design, we tested the association with mortality in 6,501 participants. We repeated the analysis within ethnicities (2,528 non-Hispanic white [NHW], 1,979 non-Hispanic black [NHB], and 1,994 Mexican American [MA]) and within BMI categories (<25, 25-30, and ≥30 kg/m(2)). Significance was set at P < 0.05.Results: Over 17 years, 1,556 participants died. GRS was associated with mortality risk (OR 1.04 [95% CI 1.00-1.07] per T2D-associated risk allele, P = 0.05). Within ethnicities, GRS was positively associated with mortality risk in NHW and NHB, but not in MA (0.95 [0.90-1.01], P = 0.07). The negative trend in MA was largely driven by those with BMI <25 kg/m(2) (0.91 [0.82-1.00]). In NHW, the positive association was strongest among those with BMI ≥30 kg/m(2) (1.07 [1.02-1.12]).Conclusions: In the U.S., a higher T2D genetic risk was associated with increased mortality risk, especially among obese NHW. The underlying genetic basis for mortality likely involves complex interactions with factors related to ethnicity, T2D, and body weight. [ABSTRACT FROM AUTHOR]- Published
- 2016
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5. Gene-environment interactions and obesity traits among postmenopausal African-American and Hispanic women in the Women's Health Initiative SHARe Study.
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Velez Edwards, Digna, Naj, Adam, Monda, Keri, North, Kari, Neuhouser, Marian, Magvanjav, Oyunbileg, Kusimo, Ibukun, Vitolins, Mara, Manson, JoAnn, O'Sullivan, Mary, Rampersaud, Evadnie, and Edwards, Todd
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OBESITY genetics ,GENOTYPE-environment interaction ,POSTMENOPAUSE ,BODY mass index ,OVERWEIGHT women ,GENETIC polymorphisms ,HEALTH - Abstract
Genome-wide association studies (GWAS) of obesity measures have identified associations with single nucleotide polymorphisms (SNPs). However, no large-scale evaluation of gene-environment interactions has been performed. We conducted a search of gene-environment (G × E) interactions in post-menopausal African-American and Hispanic women from the Women's Health Initiative SNP Health Association Resource GWAS study. Single SNP linear regression on body mass index (BMI) and waist-to-hip circumference ratio (WHR) adjusted for multidimensional-scaling-derived axes of ancestry and age was run in race-stratified data with 871,512 SNPs available from African-Americans ( N = 8,203) and 786,776 SNPs from Hispanics ( N = 3,484). Tests of G × E interaction at all SNPs for recreational physical activity (m h/week), dietary energy intake (kcal/day), alcohol intake (categorical), cigarette smoking years, and cigarette smoking (ever vs. never) were run in African-Americans and Hispanics adjusted for ancestry and age at interview, followed by meta-analysis of G × E interaction terms. The strongest evidence for concordant G × E interactions in African-Americans and Hispanics was for smoking and marker rs10133840 (Q statistic P = 0.70, beta = −0.01, P = 3.81 × 10) with BMI as the outcome. The strongest evidence for G × E interaction within a cohort was in African-Americans with WHR as outcome for dietary energy intake and rs9557704 (SNP × kcal = −0.04, P = 2.17 × 10). No results exceeded the Bonferroni-corrected statistical significance threshold. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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