1. A rare Waxy allele coordinately improves rice eating and cooking quality and grain transparency
- Author
-
Qiaoquan Liu, Shengjie Chen, Minghong Gu, Qianfeng Li, Changquan Zhang, Xueju Liu, Yan Lu, Jihui Zhu, Lihui Zhou, Xiaolei Fan, Yong Yang, and Shuzhu Tang
- Subjects
0106 biological sciences ,0301 basic medicine ,Locus (genetics) ,Plant Science ,01 natural sciences ,Biochemistry ,General Biochemistry, Genetics and Molecular Biology ,Japonica ,Endosperm ,Molecular Physiology ,Waxy ,03 medical and health sciences ,chemistry.chemical_compound ,Amylose ,Gene Expression Regulation, Plant ,Grain quality ,Oryza sativa L ,Cultivar ,Allele ,Alleles ,Plant Proteins ,Oryza sativa ,biology ,fungi ,food and beverages ,Oryza ,allelic variation ,biology.organism_classification ,eating and cooking quality (ECQ) ,amylose content (AC) ,Horticulture ,030104 developmental biology ,chemistry ,grain appearance ,010606 plant biology & botany - Abstract
In rice (Oryza sativa), amylose content (AC) is the major factor that determines eating and cooking quality (ECQ). The diversity in AC is largely attributed to natural allelic variation at the Waxy (Wx) locus. Here we identified a rare Wx allele, Wx mw, which combines a favorable AC, improved ECQ and grain transparency. Based on a phylogenetic analysis of Wx genomic sequences from 370 rice accessions, we speculated that Wx mw may have derived from recombination between two important natural Wx alleles, Wx in and Wx b. We validated the effects of Wx mw on rice grain quality using both transgenic lines and near‐isogenic lines (NILs). When introgressed into the japonica Nipponbare (NIP) background, Wx mw resulted in a moderate AC that was intermediate between that of NILs carrying the Wx b allele and NILs with the Wx mp allele. Notably, mature grains of NILs fixed for Wx mw had an improved transparent endosperm relative to soft rice. Further, we introduced Wx mw into a high‐yielding japonica cultivar via molecular marker‐assisted selection: the introgressed lines exhibited clear improvements in ECQ and endosperm transparency. Our results suggest that Wx mw is a promising allele to improve grain quality, especially ECQ and grain transparency of high‐yielding japonica cultivars, in rice breeding programs., In the present study, a rare Wx allele, Wxmw which may have derived from recombination between two important natural Wx alleles in rice, was identified as a promising allele to improve grain quality, especially cooked rice taste and grain transparency of high‐yielding japonica cultivars, in rice breeding programs.
- Published
- 2020