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Free‐living N2 fixation (FNF) is an important source of bioavailable nitrogen for forests. Though increasing plant species diversity (PSD) benefits soil nitrogen accumulation, how it impacts FNF rate has not been explored.Forty‐five plots covering a PSD gradient were selected in a subtropical karst forest, southwest China. FNF rates in leaf litter and soil were measured using acetylene reduction assay calibrated with a 15N2 fixation method. Diazotrophic community, litter and soil properties were determined as well.The nifH gene abundance was not significantly altered in litter but was significantly decreased in soil by higher PSD. Diazotrophic community's Shannon diversity was significantly increased by higher PSD in both litter and soil. Increasing PSD inhibited litter FNF rate via aggravating phosphorus limitation and decreasing the relative abundance of Betaproteobacteria and Deltaproteobacteria. For the mineral soil horizon, increasing PSD suppressed FNF rate via decreasing nifH gene abundance caused by elevated N availability and lowered phosphorus and iron availability or through decreasing the relative abundance of Deltaproteobacteria but increasing that of Betaproteobacteria.Our findings, for the first time, reveal the microbial and abiotic controls on FNF in litter and soil in response to PSD, and hence benefit the prediction of nitrogen input via biological N2 fixation under changes in PSD. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

The influence of lithology and slope position on arbuscular mycorrhizal fungi (AMF) communities has been explored in various ecosystems, but there is a limited understanding of these mechanisms in karst regions. This study focused on typical karst hills with contrasting lithologies, specifically dolomite and limestone. Additionally, three slope positions (upper, middle, and lower) were investigated within each hill in karst forest ecosystems. Total phosphorus (TP) content in the soil was higher in dolomite compared to limestone. Conversely, exchangeable calcium (Ca) was lower in dolomite than in limestone. Notably, the lithology, rather than the slope position, exerted a significant impact on AMF diversity and abundance and the presence of specific AMF taxa. Dolomite exhibited greater AMF richness and a higher Shannon index in comparison to limestone when not accounting for slope position. The AMF community composition differed between dolomite and limestone. For instance, without considering slope position, the relative abundance of Acaulospora, Diversispora, and Paraglomus was higher in dolomite than in limestone, while the relative abundance of Claroideoglomus displayed an opposing trend. Furthermore, a more complex interaction among AMF taxa was observed in dolomite as compared to limestone, as evidenced by an increase in the number of nodes and edges in the co-occurrence networks within the dolomite. The genera Glomus, Claroideoglomus, and Diversispora exhibited a higher number of links with each other and with other AMF taxa. The study identified TP and Ca as the primary factors determining variations in AMF diversity between dolomite and limestone. Consequently, it is imperative to consider the underlying lithology and soil conditions when addressing the restoration of degraded karst hilly areas. [ABSTRACT FROM AUTHOR]

In China, the total area of rocky desertification covers 1.01x107 hm², accounting for 22.3% of the karst area. Nowadays, rocky desertification has become one of the three major land degradation problems in our country, which has seriously affected our economic development and environmental governance. Naturally, rock weathering in the karst area is so long that it takes from a few decades to a hundred years to form a centimeter think of red soil. Because the karst area is rich in calcium and barren in soil, ecological restoration of this area is urgent in both rocky desertification control and karst carbon sink. Carbonic Anhydrase (CA), one of the fastest catalyzing enzymes, can promote the weathering of carbonate rocks by accelerating the hydration reaction of CO2, thus providing soil matrices for plant colonization. At the same time, CA can also be used to absorb CO2 in the atmosphere to fix the carbon source, thereby participating in the carbon cycle process of karst dynamic system. The CA-producing microorganisms are considered to have good application prospects in the restoration of degraded karst habitats. However, for the target strains isolated from favorable habitat, their weak adaptability to the extreme environment may constrain them from exerting their expected effects. In order to select the strain with high CA activity in the extremely degraded karst habitat, CA-producing strains were isolated from the samples of severely degraded rocky karst habitats in this study. The study area is located in Hechi City, Guangxi Zhuang (23°41'--25°37' N, 106°34'-109°09' E). It has a subtropical monsoon climate, with an average annual temperature of 16.9-21.5 °C. The area is typically developed with karst, scattered with thin soil and highly exposed with rocks. From September to October 2021, four different habitat samples were collected, including lichen in the area with extreme rocky desertification weathered materials under moss, soil under moss, and weathered materials under moss in karst native forest. The source of isolation was a mixture of the four different habitat samples, 1g of each. CA-producing strains were isolated and screened from karst rocky habitats by inoculating suspension of isolation source in calcium carbonate medium with a sprayer. The field emission scanning electron microscope was used for morphological identification of the strain. The physiological and biochemical characteristics of the strain were confirmed by carbohydrate decomposition test, V-P test, methyl red test, citrate utilization test, nitrate reduction test, starch hydrolysis test and contact enzyme test. Strains were identified by 16S rRNA sequence analysis. The CA activity of single strain and mixed strain was determined by electrode method. The sequence alignment was performed in the National Center for Biotechnology Information Database. In MEGA6, Neighbor-Joining method is used to construct the phylogenetic tree. SPSS software was used to analyze whether there were significant differences in CA activity among different strains/microflora. The results show that six CA-producing strains were isolated by calcium carbonate medium, namely, Flavobacterium resistens, Delftia acidovorans, Stenotrophomonas rhizophila, Pseudomonas oleovorans, Agrobacterium cavarae and Bacillus albus. The CA activity of Stenotrophomonas rhizophila was the highest, up to 4.27 U½mL-1½OD600-1, while that of Bacillus albus was only 0.46 U½mL-1½OD600-1, which indicated that although CA commonly existed in prokaryotes, the activity of different species of bacteria varied greatly. Mixed culturing of Stenotrophomonas rhizophila whose CA activity is high with other strains led to a decrease in CA activity, indicating the great potential application of Stenotrophomonas rhizophila in the extremely oligotrophic environment. The results provide a new bacterial source for ecological restoration of extremely degraded karst habitats. However, all the CA activity decreased when the isolated Stenotrophomonas rhizophila strain N6 with high CA activity is mixed with other 5 strains. Because of the complex living environment, the competition of indigenous microbial community will reduce the survival efficiency of the added microorganisms, make it difficult to form a stable community structure, and then reduce the repair effect. In restoration of degraded karst habitat, whether there is a kind of dominant bacteria that is symbiotic with Stenotrophomonas rhizophila N6 to jointly promote carbonate dissolution is a research focus. Therefore, future studies should identify the core species that drive the restoration of degraded habitats, and explore the relationship between the isolated and culturable CA dominant bacteria and the core species. These study focuses will promote the research and development of biological fertilizer for the rapid restoration of degraded karst habitats. [ABSTRACT FROM AUTHOR]

In view of the continuous decline in organic carbon content in citrus orchard soil, to explore the effects of biochar and farmland waste on the transformation of organic carbon in citrus orchard soil. In this study, the soil of a citrus orchard in Yangshuo County, Guilin, Guangxi, China, was collected. The citrus peel and the Cipangopaludina chinensis shell were used as raw materials, the citrus peel was used to prepare biochar, and the Cipangopaludina chinensis shell was powdered. The materials were added to the soil in different proportions. A 30-day indoor incubation soil was conducted to investigate the effects of adding different proportions of citrus peel biochar and Cipangopaludina chinensis shell powder on the transformation of organic carbon in citrus orchard soil. Compared with the control group, the addition of 4% orange peel biochar, 2% orange peel biochar + 2% Cipangopaludina chinensis shell powder, 2.6% orange peel residue biochar + 1.3% Cipangopaludina chinensis shell powder, and 3% orange peel biochar + 1% Cipangopaludina chinensis shell powder increased soil organic carbon by 22.49%, 20.06%, 19.81%, and 21.35%, respectively. Compared with the control, 2.6% orange peel biochar + 1.3% Cipangopaludina chinensis shell powder had the best effect on the improvement of soil organic carbon components, and microbial biomass carbon (MBC), dissolved organic carbon (DOC) and readily oxidized organic carbon (ROC) increased by 19.81%, 64.88%, 67.81%, and 19.44%, respectively. Different proportions of orange peel residue biochar and Cipangopaludina chinensis shell powder were applied to the soil of the citrus orchard to effectively increase the soil organic carbon component content and enzyme activities. This study provides a theoretical basis for the carbon sequestration mechanism of citrus orchard soil using different proportions of orange peel residue biochar and Cipangopaludina chinensis shell powder. [ABSTRACT FROM AUTHOR]

Considering the crucial role of soil diazotrophs and root arbuscular mycorrhizal fungi (AMF) in soil nutrient cycling during ecosystem restoration, diazotroph and AMF communities may be determined by slope position. However, the effect of slope position on diazotroph and AMF abundance, diversity, and community composition of karst ecosystems remains unknown. In this study, soil diazotrophs and root AMF characteristics on varying slope positions were assessed in a karst shrub ecosystem. The results displayed that the abundance of soil diazotrophs and root AMF diversity were significantly affected by slope position. Diazotroph abundance accompanied by soil nutrient and plant richness was higher on the lower slopes than the upper slopes, whereas root AMF diversity displayed the opposite trend. The soil diazotroph and root AMF community composition differed among the upper, middle, and lower slopes. The dominant taxa of soil diazotrophs and root AMF at the order level were Rhizobiales and Glomerales, respectively. Moreover, the diazotroph order of Nostocales and the AMF order of Paraglomerales were richer on the upper slopes than on the lower slopes. The slope position directly affected the plant diversity and soil nutrient distribution, indirectly affecting the diazotroph and AMF communities. Increased available nitrogen on the lower slope caused great diazotroph abundance by stimulating plant growth with sufficient carbohydrates. However, low soil nutrients and plant diversity but high plant root biomass induced more root AMF diversity on the upper slope than on the lower slope. Therefore, this study expands the knowledge of soil diazotroph and root AMF ecological functions along different slope positions during vegetation recovery for the successive stages of grass and shrub in the karst region. [ABSTRACT FROM AUTHOR]

Sugarcane is the most important sugar crop. Sugarcane smut is one of the major diseases, which could reduce sugarcane yield and quality and seriously threaten the sustainable and healthy development of sugar industry. Microbial control of sugarcane smut is a rapidly emerging green biocontrol technology, with advantage to increase environmental compatibility and soil fertility. In this review, we briefly described the characteristics of Sporisorium scitamineum which causes sugarcane smut, synthesized the mechanisms underlying the infection of sugarcane by S. scitamineum, and presented the research status of microbial controls of sugarcane smut via the application of bio-organic fertilizers and biopesticides. We then reviewed the mechanisms underlying the suppression of sugarcane smut by microorganisms through competition with pathogens for nutrients and ecological niches, secreting antagonistic substances, and improving plant resistance. It is notable that there are still some problems in the application of microbial control technologies, including poor colonization ability and unstable biocontrol efficiency. Finally, the major directions of future research on the biocontrol of sugarcane smut were proposed from the perspective of improving the biocontrol efficiency. This review would benefit the microbial control of sugarcane smut and the healthy development of sugar industry. [ABSTRACT FROM AUTHOR]

Bacteria, fungi, and protist are important in driving nutrient cycling. The microbiological mechanism underlying vegetation restoration during different temperature and precipitation gradients remains unclear. To determine the relationship between microbes and nutrients, we examined the changes in soil bacterial, fungal, and protist diversity and community composition under two different temperatures in a plantation forest and shrubland as well as reference cropland in a karst region. Bacterial and protist diversity in the warm and low‐altitude region of Guangxi (average temperature 20.9°C) was higher in cropland than in shrubland or plantation forest. By contrast, fungal richness was lower in cropland than in shrubland. A co‐occurrence network revealed higher numbers of correlated links among the bacterial, fungal, and protist taxa in the cool and high‐altitude region of Guizhou (average temperature 14.6°C) than in the warm and low‐altitude region of Guangxi. Stronger interactions were observed among microbial taxa under cropland than in vegetation restoration. The protist groups Cercozoa and Lobosa showed the highest numbers of links with the bacterial phyla Acidobacteria and Proteobacteria and with the fungal phylum Ascomycota. The numbers of Proteobacteria, Ascomycota, and Cercozoa were most correlated with soil nutrient levels of carbon, nitrogen, and phosphorus. Overall, microbial interactions were higher at low temperatures than at high temperatures, consequently intensifying the predation of bacteria and fungi by protists at a low‐temperature level. Furthermore, Proteobacteria, Ascomycota, and Cercozoa were the keystone taxa linked to nutrient availability; hence, effective monitoring of these dominant groups may be beneficial for increasing nutrient accumulation during vegetation restoration. [ABSTRACT FROM AUTHOR]

Researchers have used both soil nematode data and soil quality index (SQI) data as indicators of soil quality. However, the relationship between soil nematodes and soil quality index is poorly understood. This study explored the relationship between soil nematode properties and soil quality in different land-use types in a subtropical karst region of Southwest China. We selected the following five typical land-use types that differ in the degree of soil disturbance: cropland (maize and soybean), sugarcane, mulberry, forage grass, and forest. SQI was calculated on the basis of bulk density (BD), soil pH, the ratio of soil organic carbon to total nitrogen (C:N), the contents of soil water (SWC), soil total nitrogen (TN), soil organic carbon content (SOC), calcium (Ca), magnesium (Mg), microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), ammonium nitrogen (AN), nitrate nitrogen (NN), bacteria, fungi, actinomycetes (ACT), and arbuscular mycorrhizal fungi (AMF). We found that the abundance, Simpson dominance index, and metabolic footprint of soil nematodes were highest in the forest, followed by sugarcane, cropland (maize and soybean), forage grass, and mulberry. The SQI was highest in the forest and lowest in the cropland. There was no significant difference observed among the other three regions. In addition, the SQI was positively correlated with the total nematode biomass and abundances of total nematodes, fungivores, and herbivores, the abundances of total nematodes biomass and total nematode abundance, fungivores, and herbivores. A random forest model revealed that the dominant nematode genera (i.e., Coomansus and Acrobeloides) and the rare genera (i.e., Heterocephalobus) were closely associated with soil quality. Our results suggest that the soil nematodes (especially keystone genera) may mediate the effects of ecosystem disturbance on soil quality. These findings increase our understanding of the relationships between soil organisms and soil quality. [ABSTRACT FROM AUTHOR]

Purpose: Tillage disturbance can significantly affect soil microbial metabolic activity and CO2 fluxes. Nevertheless, the influence of different tillage frequencies on microbial metabolic activity and short-term temporal changes of CO2 fluxes remains unclear. Materials and methods: We established an in situ experiment with the following treatments: no tillage (T0), semiannual tillage (T1), tillage every 4 months (T2), bimonthly tillage (T3), and monthly tillage (T4). The microbial metabolic activity (Biolog EcoPlate), short-term (hours to days) temporal changes in CO2 fluxes within 1 week, and soil properties were measured after 1 year of treatment. Results and discussion: The highest CO2 emissions occurred in the first 72 h after tillage treatment and were significantly higher in T3 and T4 than in T0, T1, and T2 within 1 week. Average well color development (AWCD) values reflect microbial metabolic activity and were significantly higher in the tillage treatments (T1, T2, T3, and T4) than under no tillage. There was no significant difference in the Shannon diversity index under all treatments. A higher Simpson diversity index was observed under high tillage frequency in T2, T3, and T4 compared with T0 and T1, while the highest was observed in T2. The highest utilization of carboxylic acids, amino acids, and polymers occurred in T3 and T4 soils, whereas T2 had the highest utilization of carbohydrates, amines, and miscellaneous carbon sources. AWCD values and short-term CO2 fluxes were significantly correlated with annual changes in soil organic carbon (△SOC), annual changes in dissolved organic carbon (△DOC), microbial biomass carbon (MBC), and large macroaggregates (> 1 mm). Conclusions: These results suggest that frequent tillage disturbance increases microbial metabolic activity, which can stimulate short-term CO2 emissions through changes in soil aggregates, SOC, DOC, and MBC. [ABSTRACT FROM AUTHOR]

Arbuscular mycorrhizal (AM) fungi and nitrogen-fixing bacteria play important roles in plant growth and recovery in degraded ecosystems. The desertification in karst regions has become more severe in recent decades. Evaluation of the fungal and bacterial diversity of such regions during vegetation restoration is required for effective protection and restoration in these regions. Therefore, we analyzed relationships among AM fungi and nitrogen-fixing bacteria abundances, plant species diversity, and soil properties in four typical ecosystems of vegetation restoration (tussock (TK), shrub (SB), secondary forest (SF), and primary forest (PF)) in a karst region of southwest China. Abundance of AM fungi and nitrogen-fixing bacteria, plant species diversity, and soil nutrient levels increased from the tussock to the primary forest. The AM fungus, nitrogen-fixing bacterium, and plant community composition differed significantly between vegetation types ( p < 0.05). Plant richness and pH were linked to the community composition of fungi and nitrogen-fixing bacteria, respectively. Available phosphorus, total nitrogen, and soil organic carbon levels and plant richness were positively correlated with the abundance of AM fungi and nitrogen-fixing bacteria ( p < 0.05). The results suggested that abundance of AM fungi and nitrogen-fixing bacteria increased from the tussock to the primary forest and highlight the essentiality of these communities for vegetation restoration. [ABSTRACT FROM AUTHOR]

Laccase enzymes produced by both soil bacteria and fungi play important roles in refractory organic matter turnover in terrestrial ecosystems. We investigated the abundance and diversity of fungal laccase genes and bacterial laccase-like genes in soil from subtropical arable lands, and identified which microbial group was associated with laccase activity. Compared with fungal laccase genes, the bacterial laccase-like genes had greater abundance, richness and Shannon-Wiener diversity. More importantly, laccase activity can be explained almost exclusively by the bacterial laccase-like genes, and their abundance had significant linear relationship with laccase activity. Thus, bacterial laccase-like gene has great potential to be used as a sensitive indicator of laccase enzyme for refractory organic matter turnover in subtropical arable lands. [ABSTRACT FROM AUTHOR]

Researchers recently proposed a model describing the trade-offs between the positive and negative effects of nitrogen (N) fertilization on biomass and/or abundance of soil biota. The positive effects presumably result from the bottom-up influences of fertilizer-enhanced plant growth and from the improved soil habitat for soil biota. The negative effects presumably result from degradation of soil physico-chemical properties (e.g., salt effect, aluminum toxicity, calcium or magnesium deficiency, soil pH decline, and soil carbon resource availability reduction). The magnitude of these effects determines the net effect (or trade-off) of N fertilization on the biomass and/or abundance of soil biota. Our understanding of how positive and negative effects generate different net effects with changes in the N fertilization level is inadequate. In this paper, we propose two patterns of positive and negative effects (i.e., S-shaped and linear curves when the effects are plotted on fertilization level) and consider the many possibilities for the trade-offs. Specifically, there were 7 possible trade-offs between S-shaped positive effects and linear negative effects, 9 possibilities of the trade-off between linear positive effects and linear negative effects, 20 possibilities of the trade-off between S-shaped positive effects and S-shaped negative effects, and 9 possibilities of the trade-off between linear positive effects and S-shaped negative effects. In addition, the net effect might change or remain neutral (±), positive (+), or negative (−) with increasing nitrogen application. The hypothetical model could help explain the inconsistent results of the impacts of fertilization on soil biota reported in previous studies and could increase our understanding of the responses of soil biota to fertilization and other environmental disturbances. [ABSTRACT FROM AUTHOR]

Arbuscular mycorrhizal (AM) fungi are crucial for vegetation regeneration because they play an important role in plant establishment and growth. We investigated the relationships among AM fungal diversity, plant diversity, and soil properties during vegetation restoration in degraded karst ecosystems. Pyrosequencing approach was used to determine the genetic diversity and composition of AM fungal communities in four typical ecosystems of vegetation restoration (tussock (TK), shrub (SB), secondary forest (SF), and primary forest (PF)) in a karst region of southwest China. The diversity, richness, and evenness of plant species were evaluated through field surveys. Basic soil properties were measured. Plant species diversity and soil nutrient contents increased with vegetation restoration from tussock to primary forest, but the diversity of AM fungi followed the order of shrub ≈ secondary forest ≈ primary forest < tussock. The composition of AM fungi and plant communities differed significantly between ecosystems ( p < 0.05). The richness of AM fungi was negatively correlated with both the plant diversity (the indices of plant Shannon–Wiener, evenness and richness) and soil properties (soil available phosphorus (AP), soil organic carbon (SOC) and pH) ( p < 0.05). Redundancy analysis showed that the AM fungal communities closely linked to plant richness, soil organic carbon, soil available phosphorus and pH. These results suggest that the diversity and composition of AM fungi in karst region are influenced by plant communities and soil nutrient conditions. [ABSTRACT FROM AUTHOR]

Nodulation symbiosis is a key component of natural ecosystems, and the nitrogen-fixing ability of such symbioses can have a significant impact on the restoration of degraded ecosystems. Here, we investigated the diversity of legume-rhizobium symbioses, compared the N 2 -fixing efficiency of legume-rhizobium symbioses, and clarified the relationship of rhizobia, host species, and microhabitat. Eighteen potential N 2 -fixing species were surveyed, and only nine of them were found to be nodulated. Most of wild legumes were found to be associated with rhizobia belonging to the genus Bradyrhizobium , except for Callerya nitida , which formed associations with the genus Mesorhizobium . δ 15 N signatures of Derris fordii were significantly closer to zero than all the other plants tested, suggesting that the D. fordii- ISA2507 ( Bradyrhizobium elkanii ) symbiosis might have the highest N 2 -fixing efficiency of all the associations. D. fordii and its rhizobial symbionts may have potential for application in ecological restoration and agricultural production. Host species selection was the major factor, and there was no significant effect of slope position on nodulation-legume symbioses in our study area, in which altitudes ranged from 287 m to 521 m at the small scale. The Shannon diversity and the evenness of N 2 -fixing species (nodulated legumes) were significantly positively correlated ( P < 0.05) with the Shannon and evenness across non-N 2 -fixing plants (non-nodulated plants), suggesting that the Bradyrhizobium -legume nodulation symbiosis plays an important role in maintaining plant community structure in this degraded ecosystem. [ABSTRACT FROM AUTHOR]

Karst ecosystems are fragile and are in many regions degraded by anthropogenic activities. Current management of degraded karst areas focuses on aboveground vegetation succession or recovery and aims at establishing a forest ecosystem. Whether progressive succession of vegetation in karst areas is accompanied by establishment of soil biota is poorly understood. In the present study, soil microbial and nematode communities, as well as soil physico-chemical properties were studied along a progressive succession of secondary vegetation (from grassland to shrubland to forest) in a karst area in southwest China. Microbial biomass, nematode density, ratio of fungal to bacterial biomass, nematode structure index, and nematode enrichment index decreased with the secondary succession in the plant community. Overall, the results indicated a pattern of declines in soil biota abundance and food web complexity that was associated with a decrease in soil pH and a decrease in soil organic carbon content with the progressive secondary succession of the plant community. Our findings suggest that soil biota amendment is necessary during karst ecosystem restoration and establishment and management of grasslands may be feasible in karst areas. [ABSTRACT FROM AUTHOR]

Understanding the effects of straw return and N fertilization on soil organic matter (SOM) transformations will help maintain crop production and soil function, which can ultimately contribute to mitigating climate change. In this study, we conducted a 100-day soil incubation experiment with the addition of 13C-labeled maize straw and/or N fertilization. Soils that were used in the study included soil without fertilizers (Control), with mineral fertilizer alone (NPK), and with mineral fertilizer and straw (NPK+Straw). Compared with the control, the NPK- and NPK+Straw-treated soils showed higher straw decomposition by 59% and 55%, and SOM mineralization by 27% and 37%, respectively, although the priming effect was decreased by 59% and 39%, respectively. The priming effect (PE) was higher with increased N content and lower with decreased N additions because of an improved C/N ratio for microorganisms. Straw additions compared to without straw increased the bacterial and fungal abundance by 1.4- and 4.9-fold, respectively. N fertilization lowered C/N ratios resulting in decreased fungal diversity. Although the bacterial abundance decreased, the diversity increased with the duration of incubation as the bacteria preferred to utilize the labile organic compounds that were abundant in the initial stages of incubation. In addition to the depletion of labile organic compounds, the fungal abundance increased. Bacteria (Firmicutes, Actinobacteria, and Proteobacteria phyla) and fungi (Ascomycota, Basidiomycota, and Mucoromycota phyla) dominated straw and SOM decomposition. Firmicutes were mostly involved in straw and SOM mineralization during the first day after straw addition. The edge number and ratio for pairwise correlations between environmental factors and fungal taxa (22.1–24.6%) were greater than those with bacterial taxa (1.0–2.9%) in the microbial correlation network. Overall, straw combined with a low level of added N benefited soil C sequestration by decreasing the PE. Compared to bacteria, the functional role of fungi in SOM mineralization is more prominent and should be considered during agricultural management. • Straw with low nitrogen addition increased carbon sequestration by a low priming effect. • Firmicutes are mainly involved in the initial stage of organic matter mineralization. • Firmicutes, Actinobacteria, and Proteobacteria of bacteria aid organic matter mineralization. • Fungal phyla Ascomycota, Basidiomycota, and Mucoromycota dominate organic matter decomposition. • Fungal taxa correlate closer with organic matter mineralization than bacterial groups. [ABSTRACT FROM AUTHOR]

Soil ammonia oxidizers play a critical role in nitrogen cycling and ecological restoration. The composition and structure of soil ammonia oxidizers and their impacting factors were studied in four typical ecosystem soils, tussock (T), shrub (S), secondary forest (SF), and primary forest (PF), during vegetation restoration in the Karst region of Southwest China. The composition and structure of the ammonia-oxidizing bacteria (AOB) and ammonia-oxidizing archaea (AOA) communities were characterized by sequencing the amoA and arch- amoA genes, respectively. The diversity of soil ammonia oxidizers (except in S) and plant Shannon diversity index gradually increased with vegetation restoration, and the ammonia oxidizer communities differed significantly ( p < 0.001). Amplicons of AOA from the Nitrososphaera cluster dominated all four ecosystem soils. AOB Nitrosospira cluster 3b only appeared in PF and SF soils, while Nitrosospira cluster 3a species were found in all soils. Changes in AOB paralleled the changes in soil ammonium content that occurred with vegetation restoration. Redundancy analysis showed that the distribution of dominant AOB species was linked to pH, soil urease activity, and soil C/N ratio, whereas the distribution of dominant AOA species was mainly influenced by litter nitrogen content and C/N ratio. These results suggested that the composition and structure of the AOB community were more sensitive to changes in vegetation and soil ammonium content, and may be an important indicator of nitrogen availability in Karst ecosystem soils. [ABSTRACT FROM AUTHOR]

Diazotrophs and arbuscular mycorrhizal fungi (AMF) are important functional microbes that provide and transport nutrients to plants. Diazotroph and AMF diversity and community composition were investigated in karst mature forests (MFs) and non-karst forests, as well as in croplands (CRs) as a reference. Diazotroph diversity and community composition significantly shifted in MFs between karst and non-karst soils, with a higher diazotroph richness and Shannon index in karst MFs than in non-karst soils. Similar levels of AMF diversity and community composition were observed between karst and non-karst CRs and MFs. According to the co-occurrence network analysis results, the pairs of correlation links within the diazotroph and AMF groups were higher in karst MFs than in non-karst MFs, whereas this interaction was lower in karst CRs than in non-karst CRs. The diazotroph genera Bradyrhizobium and Anabaena and the AMF genera Glomus and Rhizophagus were mostly correlated with other species in both karst and non-karst soils. Diazotrophs and AMF communities were mainly affected available nutrients (e.g., nitrogen and phosphorus) and environmental factors (e.g., temperature and precipitation), respectively. Soil calcium content was an important factor that affected the distributions of diazotrophs and AMF between karst and non-karst soils. Overall, our study suggested that the increased interactions between diazotrophs and AMF in karst forests, as compared with those in non-karst soil, led to the stability of the diazotrophs and AMF co-occurrence patterns for maintaining nutrients that are effectively absorbed and utilized. Thus, strengthening the cooperative relationships between diazotrophs and AMF are important and necessary in calcareous soils during natural vegetation restoration. [Display omitted] • Diazotroph diversity increased in karst mature forest compared with that in non-karst soil. • Arbuscular mycorrhizal fungal (AMF) diversity was similar in karst and non-karst soil. • Karst mature forest strengthened interactions among diazotroph and AMF. • AMF were more sensitive to climate; diazotrophs were more sensitive to nutrients. [ABSTRACT FROM AUTHOR]

Plants associated with symbiotic nitrogen-fixers and soil free-living nitrogen-fixing bacteria are good indicators for detecting the source of nitrogen in natural ecosystems. However, the community composition and diversity of plants associated with symbiotic nitrogen-fixers and soil free-living nitrogen-fixing bacteria in karst shrub ecosystems remain poorly known. The community composition and diversity of soil free-living nitrogen-fixing bacteria and plants, as well as the soil physical–chemical properties were investigated in 21 shrub plots (including different topographies and plant types). The frequency of plants associated with symbiotic nitrogen-fixers was found to be low in the 21 shrub plots. The soil free-living nitrogen-fixing bacterial community structure varied among the 21 shrub soils. Based on a variance partitioning analysis, topography, plant type, and soil pH explained 48.5% of the observed variation in bacterial community structure. Plant type had a predominant effect on community structure, and topography (aspect and ascent) and soil pH had minor effects. A negative correlation between the abundance of the soil free-living nitrogen-fixing bacterial community and the richness index for plants associated with symbiotic nitrogen-fixers was observed. The result of the low frequency of plants associated with symbiotic nitrogen-fixers highlights the importance of sources of fixed nitrogen by soil free-living nitrogen-fixing bacteria in the nitrogen limitation shrub ecosystem of the karst regions. [ABSTRACT FROM AUTHOR]

Abstract: Interactions among vegetation, soil physical and chemical conditions, and soil microbial communities determine the functions, resilience and stability of ecosystems. However, these interactions are largely unclear in the fragile Karst ecosystems. This study therefore investigated the bulk soils from five vegetation stages representing the dominant vegetation succession of subtropical Karst ecosystems. The results of this study indicated that, along the vegetation succession steps from arable farming, tussock, shrub, to secondary and primary forest, the contents of organic carbon (OC) and total nitrogen (TN), cation exchange capacity (CEC), water stability index (WSI), the amounts of microbial biomass carbon (Cmb) and biomass nitrogen (Nmb), Nmb:TN ratio, and Shannon indexes of fungal phylogenetic diversity (H′pf) and bacterial phylogenetic and catabolic diversities (referred as H′pb and H′cb, respectively) increased significantly (p < 0.05), whilst soil bulk density (BD) and metabolic quotient (qCO2) decreased (p < 0.05). Soil microbial properties (Cmb, Nmb, qCO2, H′pb, H′pf and H′cb) were correlated (p < 0.05) with the contents of soil OC, TN, CEC and BD. There were also correlations (p < 0.05) between the OC and the TN, CEC and BD of soils, and between the H′cb and the qCO2 of soil microbial communities. In conclusion, the accumulation of OC with vegetation succession drives improvements of soil physico-chemical properties, and the phylogenetic diversities as indicated by their partial 16S/18S rRNA genes and catabolic capability as indicated by utilization patterns of different carbon sources of microbial communities, which in turn may accelerate the restoration of the degraded ecosystems in the subtropical Karst region. [Copyright &y& Elsevier]

• AMF richness increased at high temperature levels in shrubland and mature forest. • AMF community was more sensitive to climatic levels than that of diazotrophs. • High temperature and precipitation strengthened AMF-diazotroph interactions. • Glomus and Bradyrhizobium contributed to the most correlation links in co-occurrence patterns. Arbuscular mycorrhizal fungi (AMF) and diazotrophs have the potential for nutrient transfer and biological nitrogen fixation in ecosystems, respectively. However, their response to vegetation restoration remains unclear, especially under varying temperature and precipitation levels in karst ecosystems. This study aimed to understand the effects of three climatic levels within four natural and managed vegetation restoration types on the diversity and community composition of AMF and diazotrophs. The interactive effects of temperature, precipitation, and vegetation types affected AMF diversity, while diazotroph diversity was not affected. Under conditions of natural vegetation restoration, there was an increase in AMF diversity in response to increasing temperature and precipitation. AMF richness was higher in shrubland and mature forest than in cropland when temperatures were over 20 ℃ and precipitation was high. Thus, in terms of diversity, AMF were more responsive to changes in climatic conditions and vegetation recovery than diazotrophs. Both AMF and diazotroph community compositions were affected by temperature and vegetation type. The relative abundances of AMF groups (e.g., Gigaspora , Glomus , and Septoglomus) and diazotroph taxa (e.g., Frankia) increased at temperatures above 18 ℃. The relative abundances of the AMF genus Glomus and the diazotroph genus Bradyrhizobium in shrubland and mature forest were higher than those in cropland, while abundances of the AMF genus Septoglomus and diazotroph genus Anabaena increased in cropland. Network complexity increased with increasing temperature and precipitation between AMF and diazotroph taxa. Glomus and Bradyrhizobium showed the most links with other groups, confirming that the dominant genera perform well in the co-occurrence network. These results suggested high hydrothermal regions resist rapid nutrient decomposition by strengthening the interactions between AMF and diazotrophs, especially between the abundant groups Glomus and Bradyrhizobium. Management to increase AMF and diazotroph abundance during vegetation recovery in high climate level may stimulate nutrient absorption and transport. [ABSTRACT FROM AUTHOR]