48 results on '"Futamura R"'
Search Results
2. Cluster-associated filling of water molecules in graphene-based mesopores
- Author
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Wang, S., Futamura, R., and Kaneko, K.
- Published
- 2016
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3. Adsorption separation of heavier isotope gases in subnanometer carbon pores
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Ujjain, S.K., Bagusetty, A., Matsuda, Y., Tanaka, H., Ahuja, P., Tomas, Carla de, Sakai, M., Vallejos-Burgos, F., Futamura, R., Suarez-Martinez, Irene, Matsukata, M., Kodama, A., Garberoglio, G., Gogotsi, Y., Karl Johnson, J., Kaneko, K., Ujjain, S.K., Bagusetty, A., Matsuda, Y., Tanaka, H., Ahuja, P., Tomas, Carla de, Sakai, M., Vallejos-Burgos, F., Futamura, R., Suarez-Martinez, Irene, Matsukata, M., Kodama, A., Garberoglio, G., Gogotsi, Y., Karl Johnson, J., and Kaneko, K.
- Abstract
Isotopes of heavier gases including carbon (13C/14C), nitrogen (13N), and oxygen (18O) are highly important because they can be substituted for naturally occurring atoms without significantly perturbing the biochemical properties of the radiolabelled parent molecules. These labelled molecules are employed in clinical radiopharmaceuticals, in studies of brain disease and as imaging probes for advanced medical imaging techniques such as positron-emission tomography (PET). Established distillation-based isotope gas separation methods have a separation factor (S) below 1.05 and incur very high operating costs due to high energy consumption and long processing times, highlighting the need for new separation technologies. Here, we show a rapid and highly selective adsorption-based separation of 18O2 from 16O2 with S above 60 using nanoporous adsorbents operating near the boiling point of methane (112 K), which is accessible through cryogenic liquefied-natural-gas technology. A collective-nuclear-quantum effect difference between the ordered 18O2 and 16O2 molecular assemblies confined in subnanometer pores can explain the observed equilibrium separation and is applicable to other isotopic gases.
- Published
- 2021
4. Reconstructing the fractal clusters of detonation nanodiamonds from small-angle X-ray scattering
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Kowalczyk, P., Pina-Salazar, E-Z, Kain Kirkensgaard, J.J., Terzyk, A.P., Futamura, R., Hayashi, T., Osawa, E., Kaneko, K., Ciach, A., Kowalczyk, P., Pina-Salazar, E-Z, Kain Kirkensgaard, J.J., Terzyk, A.P., Futamura, R., Hayashi, T., Osawa, E., Kaneko, K., and Ciach, A.
- Abstract
Detonation nanodiamonds (DND) form fractal-like aggregates composed of polydisperse DND particles. We present a novel methodology for the visualisation and characterisation of fractal clusters of DND from one-dimensional small-angle X-ray scattering (SAXS) intensity. The fractal nature and polydispersity of DND are modelled by combining a diffusion-limited aggregation (DLA) process implemented in Monte Carlo simulations with the distribution of DND sizes measured from high-resolution transmission electron microscopy. The radius of gyration (42–44 nm), aggregation number (850–1150), and the maximum dimension (226–242 nm) of DND fractal clusters were obtained from the fitting of the synchrotron-based SAXS data (q∼0.11–4.75 1/nm) measured for two samples of commercialized DND powders by the developed theoretical model.
- Published
- 2020
5. Water adsorption property of hierarchically nanoporous detonation nanodiamonds
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Pina-Salazar, E-Z, Urita, K., Hayashi, T., Futamura, R., Vallejos-Burgos, F., Włoch, J., Kowalczyk, P., Wiśniewski, M., Sakai, T., Moriguchi, I., Terzyk, A.P., Osawa, E., Kaneko, K., Pina-Salazar, E-Z, Urita, K., Hayashi, T., Futamura, R., Vallejos-Burgos, F., Włoch, J., Kowalczyk, P., Wiśniewski, M., Sakai, T., Moriguchi, I., Terzyk, A.P., Osawa, E., and Kaneko, K.
- Abstract
The detonation nanodiamonds form the aggregate having interparticle voids, giving a marked hygroscopic property. As the relationship between pore structure and water adsorption of aggregated nanodiamonds is not well understood yet, adsorption isotherms of N2 at 77 K and of water vapor at 298 K of the well-characterized aggregated nanodiamonds were measured. HR-TEM and X-ray diffraction showed that the nanodiamonds were highly crystalline and their average crystallite size was 4.5 nm. The presence of the graphitic layers on the nanodiamond particle surface was confirmed by the EELS examination. The pore size distribution analysis showed that nanodiamonds had a few ultramicropores with predominant mesopores of 4.5 nm in average size. The water vapor adsorption isotherm of IUPAC Type V indicates the hydrophobicity of the nanodiamond aggregates, with the presence of hydrophilic sites. Then the hygroscopic nature of nanodiamonds should be associated with the surface functionalities of the graphitic shell and the ultramicropores on the mesopore walls.
- Published
- 2017
6. High electrical conductivity of double-walled carbon nanotube fibers by hydrogen peroxide treatments
- Author
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Morelos-Gómez, A., primary, Fujishige, M., additional, Magdalena Vega-Díaz, S., additional, Ito, I., additional, Fukuyo, T., additional, Cruz-Silva, R., additional, Tristán-López, F., additional, Fujisawa, K., additional, Fujimori, T., additional, Futamura, R., additional, Kaneko, K., additional, Takeuchi, K., additional, Hayashi, T., additional, Kim, Y. A., additional, Terrones, M., additional, Endo, M., additional, and Dresselhaus, M. S., additional
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- 2016
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7. Über die Entwickelung der Facialismuskulatur des Menschen
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Futamura, R.
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- 1906
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8. Beiträge zur Vergleichenden Entwickelungsgeschichte der Facialis-Muskulatur
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Futamura, R.
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- 1907
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9. Über die Entwickelung der Facialismuskulatur des Menschen
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Futamura, R., primary
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- 1906
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10. Beiträge zur Vergleichenden Entwickelungsgeschichte der Facialis-Muskulatur
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Futamura, R., primary
- Published
- 1907
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11. Non-porous reference carbon for N2 (77.4K) and Ar (87.3K) adsorption.
- Author
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Silvestre-Albero, A., Silvestre-Albero, J., Martínez-Escandell, M., Futamura, R., Itoh, T., Kaneko, K., and Rodríguez-Reinoso, F.
- Subjects
- *
NITROGEN absorption & adsorption , *POROUS materials , *CARBON , *ARGON , *GRANULAR materials , *CHEMICAL preparations industry , *REFERENCE sources - Abstract
Abstract: A new non-porous carbon material from granular olive stones has been prepared to be used as a reference material for the characterization of the pore structure of activated carbons. The high precision adsorption isotherms of nitrogen at 77.4K and argon at 87.3K on the newly developed sample have been measured, providing the standard data for a more accurate comparative analysis to characterize disordered porous carbons using comparative methods such as t- and α S-methods. [Copyright &y& Elsevier]
- Published
- 2014
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12. Cell type-specific epigenetic priming of gene expression in nucleus accumbens by cocaine.
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Mews P, Van der Zee Y, Gurung A, Estill M, Futamura R, Kronman H, Ramakrishnan A, Ryan M, Reyes AA, Garcia BA, Browne CJ, Sidoli S, Shen L, and Nestler EJ
- Subjects
- Animals, Mice, Male, Gene Expression Regulation drug effects, Cocaine-Related Disorders genetics, Cocaine-Related Disorders metabolism, Receptors, Dopamine D1 metabolism, Receptors, Dopamine D1 genetics, Neurons metabolism, Neurons drug effects, Chromatin metabolism, Chromatin genetics, Nucleus Accumbens metabolism, Nucleus Accumbens drug effects, Cocaine pharmacology, Epigenesis, Genetic drug effects, Histones metabolism
- Abstract
A hallmark of addiction is the ability of drugs of abuse to trigger relapse after periods of prolonged abstinence. Here, we describe an epigenetic mechanism whereby chronic cocaine exposure causes lasting chromatin and downstream transcriptional modifications in the nucleus accumbens (NAc), a critical brain region controlling motivation. We link prolonged withdrawal from cocaine to the depletion of the histone variant H2A.Z, coupled with increased genome accessibility and latent priming of gene transcription, in D1 dopamine receptor-expressing medium spiny neurons (D1 MSNs) that relate to aberrant gene expression upon drug relapse. The histone chaperone ANP32E removes H2A.Z from chromatin, and we demonstrate that D1 MSN-selective Anp32e knockdown prevents cocaine-induced H2A.Z depletion and blocks cocaine's rewarding actions. By contrast, very different effects of cocaine exposure, withdrawal, and relapse were found for D2 MSNs. These findings establish histone variant exchange as an important mechanism and clinical target engaged by drugs of abuse to corrupt brain function and behavior.
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- 2024
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13. Hippocampal γCaMKII dopaminylation promotes synaptic-to-nuclear signaling and memory formation.
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Stewart AF, Fulton SL, Durand-de Cuttoli R, Thompson RE, Chen PJ, Brindley E, Cetin B, Farrelly LA, Futamura R, Claypool S, Bastle RM, Di Salvo G, Peralta C, Molina H, Baljinnyam E, Marro SG, Russo SJ, DeVita RJ, Muir TW, and Maze I
- Abstract
Protein monoaminylation is a class of posttranslational modification (PTM) that contributes to transcription, physiology and behavior. While recent analyses have focused on histones as critical substrates of monoaminylation, the broader repertoire of monoaminylated proteins in brain remains unclear. Here, we report the development/implementation of a chemical probe for the bioorthogonal labeling, enrichment and proteomics-based detection of dopaminylated proteins in brain. We identified 1,557 dopaminylated proteins - many synaptic - including γCaMKII, which mediates Ca
2+ -dependent cellular signaling and hippocampal-dependent memory. We found that γCaMKII dopaminylation is largely synaptic and mediates synaptic-to-nuclear signaling, neuronal gene expression and intrinsic excitability, and contextual memory. These results indicate a critical role for synaptic dopaminylation in adaptive brain plasticity, and may suggest roles for these phenomena in pathologies associated with altered monoaminergic signaling., Competing Interests: COMPETING INTERESTS The Authors declare no competing interests.- Published
- 2024
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14. Cell-Type-Specific Regulation of Cocaine Reward by the E2F3a Transcription Factor in Nucleus Accumbens.
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Martínez-Rivera FJ, Yim YY, Godino A, Minier-Toribio A, Tofani S, Holt LM, Torres-Berrío A, Futamura R, Browne CJ, Markovic T, Hamilton PJ, Neve RL, and Nestler EJ
- Abstract
The development of drug addiction is characterized by molecular changes in brain reward regions that lead to the transition from recreational to compulsive drug use. These neurobiological processes in brain reward regions, such as the nucleus accumbens (NAc), are orchestrated in large part by transcriptional regulation. Our group recently identified the transcription factor E2F3a as a novel regulator of cocaine's rewarding effects and gene expression regulation in the NAc of male mice. Despite this progress, no information is available about the role of E2F3a in regulating cocaine reward at the sex- and cell-specific levels. Here, we used male and female mice expressing Cre-recombinase in either D1- or D2-type medium spiny neurons (MSNs) combined with viral-mediated gene transfer to bidirectionally control levels of E2F3a in a cell-type-specific manner in the NAc during conditioned place preference (CPP) to cocaine. Our findings show that selective overexpression of E2F3a in D1-MSNs increased cocaine CPP in both male and female mice, whereas opposite effects were observed under knockdown conditions. In contrast, equivalent E2F3a manipulations in D2-MSNs had no significant effects. To further explore the role of E2F3a in sophisticated operant and motivated behaviors, we performed viral manipulations of all NAc neurons in combination with cocaine self-administration and behavioral economics procedures in rats and demonstrated that E2F3a regulates sensitivity aspects of cocaine seeking and taking. These results confirm E2F3a as a central substrate of cocaine reward and demonstrate that this effect is mediated in D1-MSNs, thereby providing increased knowledge of cocaine action at the transcriptional level.
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- 2024
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15. Two distinct host-parasite associations mediate seasonal ecosystem linkages.
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Asakura H, Futamura R, Moriyama S, Iida S, Araki K, Ayumi M, Kumikawa S, Matsuoka Y, Takahashi T, Uchida J, Kishida O, and Sato T
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- Animals, Salmonidae parasitology, Phylogeny, Helminths physiology, Coleoptera parasitology, Coleoptera physiology, Rivers, Seasons, Host-Parasite Interactions, Ecosystem
- Abstract
Nematomorph parasites manipulate terrestrial arthropods to enter streams where the parasites reproduce. These manipulated arthropods become a substantial prey subsidy for stream salmonids, causing cross-ecosystem energy flow. Diverse nematomorph-arthropod associations underlie the energy flow, but it remains unknown whether they can mediate the magnitude and temporal attributes of the energy flow. Here, we investigated whether distinct phylogenetic groups of nematomorphs manipulate different arthropod hosts and mediate seasonal prey subsidy for stream salmonids. The results of our molecular-based diagnoses show that Gordionus and Gordius nematomorphs infected ground beetle and orthopteran hosts, respectively. The presumable ground beetle hosts subsidized salmonid individuals in spring, whereas the presumable orthopteran hosts did so in autumn. Maintaining the two distinct nematomorph-arthropod associations thus resulted in the parasite-mediated prey subsidy in both spring and autumn in the study streams. Manipulative parasites are common, and often associated with a range of host lineages, suggesting that similar effects of phylogenetic variation in host-parasite associations on energy flow might be widespread in nature.
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- 2024
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16. tRNA epitranscriptomic alterations associated with opioid-induced reward-seeking and long-term opioid withdrawal in male mice.
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Blaze J, Browne CJ, Futamura R, Javidfar B, Zachariou V, Nestler EJ, and Akbarian S
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- Animals, Male, Mice, Epigenesis, Genetic drug effects, Analgesics, Opioid pharmacology, Analgesics, Opioid administration & dosage, Mice, Knockout, Drug-Seeking Behavior drug effects, Drug-Seeking Behavior physiology, Reward, Morphine pharmacology, Morphine administration & dosage, Morphine adverse effects, Mice, Inbred C57BL, Substance Withdrawal Syndrome genetics, Prefrontal Cortex metabolism, Prefrontal Cortex drug effects, RNA, Transfer genetics
- Abstract
DNA cytosine methylation has been documented as a potential epigenetic mechanism of transcriptional regulation underlying opioid use disorder. However, methylation of RNA cytosine residues, which would drive another level of biological influence as an epitranscriptomic mechanism of gene and protein regulation has not been studied in the context of addiction. Here, we probed whether chronic morphine exposure could alter tRNA cytosine methylation (m
5 C) and resulting expression levels in the medial prefrontal cortex (mPFC), a brain region crucial for reward processing and executive function that exhibits opioid-induced molecular restructuring. We identified dynamic changes in glycine tRNA (tRNAGly GCC ) cytosine methylation, corresponding to altered expression levels of this tRNA at multiple timepoints following 15 days of daily morphine. Additionally, a robust increase in methylation, coupled with decreased expression, was present after 30 days of withdrawal, suggesting that repeated opioid administration produces changes to the tRNA regulome long after discontinuation. Furthermore, forebrain-wide knockout of neuronal Nsun2, a tRNA methyltransferase, was associated with disruption of opioid conditioned place preference, and this effect was recapitulated by regional mPFC Nsun2 knockout. Taken together, these studies provide a foundational link between the regulation of tRNA cytosine methylation and opioid reward and highlight the tRNA machinery as a potential therapeutic target in addiction., (© 2024. The Author(s).)- Published
- 2024
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17. Circuit-Wide Gene Network Analysis Reveals Sex-Specific Roles for Phosphodiesterase 1b in Cocaine Addiction.
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Teague CD, Markovic T, Zhou X, Martinez-Rivera FJ, Minier-Toribio A, Zinsmaier A, Pulido NV, Schmidt KH, Lucerne KE, Godino A, van der Zee YY, Ramakrishnan A, Futamura R, Browne CJ, Holt LM, Yim YY, Azizian CH, Walker DM, Shen L, Dong Y, Zhang B, and Nestler EJ
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- Animals, Male, Female, Mice, Rats, Cocaine pharmacology, Reward, Cyclic Nucleotide Phosphodiesterases, Type 1 genetics, Cyclic Nucleotide Phosphodiesterases, Type 1 metabolism, Cocaine-Related Disorders genetics, Cocaine-Related Disorders metabolism, Gene Regulatory Networks drug effects, Gene Regulatory Networks genetics, Nucleus Accumbens drug effects, Nucleus Accumbens metabolism, Sex Characteristics, Mice, Inbred C57BL
- Abstract
Cocaine use disorder is a significant public health issue without an effective pharmacological treatment. Successful treatments are hindered in part by an incomplete understanding of the molecular mechanisms that underlie long-lasting maladaptive plasticity and addiction-like behaviors. Here, we leverage a large RNA sequencing dataset to generate gene coexpression networks across six interconnected regions of the brain's reward circuitry from mice that underwent saline or cocaine self-administration. We identify phosphodiesterase 1b ( Pde1b ), a Ca
2+ /calmodulin-dependent enzyme that increases cAMP and cGMP hydrolysis, as a central hub gene within a nucleus accumbens (NAc) gene module that was bioinformatically associated with addiction-like behavior. Chronic cocaine exposure increases Pde1b expression in NAc D2 medium spiny neurons (MSNs) in male but not female mice. Viral-mediated Pde1b overexpression in NAc reduces cocaine self-administration in female rats but increases seeking in both sexes. In female mice, overexpressing Pde1b in D1 MSNs attenuates the locomotor response to cocaine, with the opposite effect in D2 MSNs. Overexpressing Pde1b in D1/D2 MSNs had no effect on the locomotor response to cocaine in male mice. At the electrophysiological level, Pde1b overexpression reduces sEPSC frequency in D1 MSNs and regulates the excitability of NAc MSNs. Lastly, Pde1b overexpression significantly reduced the number of differentially expressed genes (DEGs) in NAc following chronic cocaine, with discordant effects on gene transcription between sexes. Together, we identify novel gene modules across the brain's reward circuitry associated with addiction-like behavior and explore the role of Pde1b in regulating the molecular, cellular, and behavioral responses to cocaine., Competing Interests: The authors declare no competing financial interests., (Copyright © 2024 the authors.)- Published
- 2024
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18. Staggered structural dynamic-mediated selective adsorption of H 2 O/D 2 O on flexible graphene oxide nanosheets.
- Author
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Futamura R, Iiyama T, Ueda T, Bonnaud PA, Coudert FX, Furuse A, Tanaka H, Pellenq RJ, and Kaneko K
- Abstract
Graphene oxide (GO) is the one of the most promising family of materials as atomically thin membranes for water-related molecular separation technologies due to its amphipathic nature and layered structure. Here, we show important aspects of GO on water adsorption from molecular dynamics (MD) simulations, in-situ X-ray diffraction (XRD) measurements, and ex-situ nuclear magnetic resonance (NMR) measurements. Although the MD simulations for GO and the reduced GO models revealed that the flexibility of the interlayer spacing could be attributed to the oxygen-functional groups of GO, the ultra-large GO model cannot well explain the observed swelling of GO from XRD experiments. Our MD simulations propose a realistic GO interlayer structure constructed by staggered stacking of flexible GO sheets, which can explain very well the swelling nature upon water adsorption. The transmission electron microscopic (TEM) observation also supports the non-regular staggered stacking structure of GO. Furthermore, we demonstrate the existence of the two distinct types of adsorbed water molecules in the staggered stacking: water bonded with hydrophilic functional groups and "free" mobile water. Finally, we show that the staggered stacking of GO plays a crucial role in H/D isotopic recognition in water adsorption, as well as the high mobility of water molecules., (© 2024. The Author(s).)
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- 2024
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19. Transcriptional characterization of cocaine withdrawal versus extinction within nucleus accumbens.
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Martínez-Rivera FJ, Holt LM, Minier-Toribio A, Estill M, Yeh SY, Tofani S, Futamura R, Browne CJ, Mews P, Shen L, and Nestler EJ
- Abstract
Substance use disorder is characterized by a maladaptive imbalance wherein drug seeking persists despite negative consequences or drug unavailability. This imbalance correlates with neurobiological alterations some of which are amplified during forced abstinence, thereby compromising the capacity of extinction-based approaches to prevent relapse. Cocaine use disorder (CUD) exemplifies this phenomenon in which neurobiological modifications hijack brain reward regions such as the nucleus accumbens (NAc) to manifest craving and withdrawal-like symptoms. While increasing evidence links transcriptional changes in the NAc to specific phases of addiction, genome-wide changes in gene expression during withdrawal vs. extinction (WD/Ext) have not been examined in a context- and NAc-subregion-specific manner. Here, we used cocaine self-administration (SA) in rats combined with RNA-sequencing (RNA-seq) of NAc subregions (core and shell) to transcriptionally profile the impact of experiencing withdrawal in the home cage or in the previous drug context or experiencing extinction training. As expected, home-cage withdrawal maintained drug seeking in the previous drug context, whereas extinction training reduced it. By contrast, withdrawal involving repetitive exposure to the previous drug context increased drug-seeking behavior. Bioinformatic analyses of RNA-seq data revealed gene expression patterns, networks, motifs, and biological functions specific to these behavioral conditions and NAc subregions. Comparing transcriptomic analysis of the NAc of patients with CUD highlighted conserved gene signatures, especially with rats that were repetitively exposed to the previous drug context. Collectively, these behavioral and transcriptional correlates of several withdrawal-extinction settings reveal fundamental and translational information about potential molecular mechanisms to attenuate drug-associated memories.
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- 2024
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20. Plantar flexion with inversion shows highest elastic modulus of calcaneofibular ligament using ultrasound share wave elastography.
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Takaba K, Takenaga T, Tsuchiya A, Takeuchi S, Fukuyoshi M, Nakagawa H, Matsumoto Y, Saito M, Futamura H, Futamura R, Sugimoto K, Murakami H, and Yoshida M
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- Adult, Humans, Elastic Modulus, Cadaver, Ankle Joint diagnostic imaging, Lateral Ligament, Ankle diagnostic imaging, Elasticity Imaging Techniques
- Abstract
Purpose: The functional role of the calcaneofibular ligament (CFL) is still controversial. We aimed to investigate the anatomical features of the CFL on sonography and the elastic modulus of the CFL in different ankle positions using ultrasound shear-wave elastography (SWE)., Methods: In 14 cadaveric ankles, the angle of the CFL with respect to the long axis of the fibula was measured in the following ankle positions: neutral (N), 30° plantar flexion (PF), and 20° dorsiflexion (DF). In addition, in 24 ankles of healthy adult volunteers, the elastic modulus of the CFL was evaluated with ultrasound SWE in the following ankle positions: neutral (N), 30° plantar flexion with inversion (PI), 30° plantar flexion with eversion (PE), 20° dorsiflexion with inversion (DI), and 20° dorsiflexion with eversion (DE)., Results: The mean angle of the CFL in N, PF, and DF positions was 139.9° ± 12.7°, 121.3° ± 14.1°, and 158.6° ± 13.1°, respectively. The angle of the CFL in N was significantly greater than that in PF and smaller than that in DF (P < 0.0001, both). The mean elastic modulus of the CFL in the N, PI, PE, DI, and DE positions was: 63.6 ± 50.8, 148.0 ± 39.4, 75.8 ± 40.6, 88.1 ± 31.6, and 61.7 ± 29.4 kPa, respectively. The elastic modulus in PI was significantly higher than in other positions, while the values obtained in DI and DE were also significantly different (P < 0.001, both)., Conclusions: The angle of the CFL increased with DF. Moreover, ultrasound SWE showed that the CFL was tensed and likely to be injured in the PI position., (© 2022. Società Italiana di Ultrasonologia in Medicina e Biologia (SIUMB).)
- Published
- 2023
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21. Shared and divergent transcriptomic regulation in nucleus accumbens D1 and D2 medium spiny neurons by cocaine and morphine.
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Browne CJ, Mews P, Zhou X, Holt LM, Estill M, Futamura R, Schaefer A, Kenny PJ, Hurd YL, Shen L, Zhang B, and Nestler EJ
- Abstract
Substance use disorders (SUDs) induce widespread molecular dysregulation in the nucleus accumbens (NAc), a brain region pivotal for coordinating motivation and reward. These molecular changes are thought to support lasting neural and behavioral disturbances that promote drug-seeking in addiction. However, different drug classes exert unique influences on neural circuits, cell types, physiology, and gene expression despite the overlapping symptomatology of SUDs. To better understand common and divergent molecular mechanisms governing SUD pathology, our goal was to survey cell-type-specific restructuring of the NAc transcriptional landscape in after psychostimulant or opioid exposure. We combined fluorescence-activated nuclei sorting and RNA sequencing to profile NAc D1 and D2 medium spiny neurons (MSNs) across cocaine and morphine exposure paradigms, including initial exposure, prolonged withdrawal after repeated exposure, and re-exposure post-withdrawal. Our analyses reveal that D1 MSNs display many convergent transcriptional responses across drug classes during exposure, whereas D2 MSNs manifest mostly divergent responses between cocaine and morphine, with morphine causing more adaptations in this cell type. Utilizing multiscale embedded gene co-expression network analysis (MEGENA), we discerned transcriptional regulatory networks subserving biological functions shared between cocaine and morphine. We observed largely integrative engagement of overlapping gene networks across drug classes in D1 MSNs, but opposite regulation of key D2 networks, highlighting potential therapeutic gene network targets within MSNs. These studies establish a landmark, cell-type-specific atlas of transcriptional regulation induced by cocaine and by morphine that can serve as a foundation for future studies towards mechanistic understanding of SUDs. Our findings, and future work leveraging this dataset, will pave the way for the development of targeted therapeutic interventions, addressing the urgent need for more effective treatments for cocaine use disorder and enhancing the existing strategies for opioid use disorder., Competing Interests: Competing Interests The authors declare no competing financial interests.
- Published
- 2023
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22. Cell Type-Specific Whole-Genome Landscape of ΔFOSB Binding in the Nucleus Accumbens After Chronic Cocaine Exposure.
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Yeh SY, Estill M, Lardner CK, Browne CJ, Minier-Toribio A, Futamura R, Beach K, McManus CA, Xu SJ, Zhang S, Heller EA, Shen L, and Nestler EJ
- Subjects
- Mice, Male, Female, Animals, Mice, Transgenic, Proto-Oncogene Proteins c-fos genetics, Proto-Oncogene Proteins c-fos metabolism, Nucleus Accumbens metabolism, Mice, Inbred C57BL, Cocaine pharmacology, Cocaine metabolism, Cocaine-Related Disorders
- Abstract
Background: The ability of neurons to respond to external stimuli involves adaptations of gene expression. Induction of the transcription factor ΔFOSB in the nucleus accumbens, a key brain reward region, is important for the development of drug addiction. However, a comprehensive map of ΔFOSB's gene targets has not yet been generated., Methods: We used CUT&RUN (cleavage under targets and release using nuclease) to map the genome-wide changes in ΔFOSB binding in the 2 main types of nucleus accumbens neurons-D1 or D2 medium spiny neurons-after chronic cocaine exposure. To annotate genomic regions of ΔFOSB binding sites, we also examined the distributions of several histone modifications. Resulting datasets were leveraged for multiple bioinformatic analyses., Results: The majority of ΔFOSB peaks occur outside promoter regions, including intergenic regions, and are surrounded by epigenetic marks indicative of active enhancers. BRG1, the core subunit of the SWI/SNF chromatin remodeling complex, overlaps with ΔFOSB peaks, a finding consistent with earlier studies of ΔFOSB's interacting proteins. Chronic cocaine use induces broad changes in ΔFOSB binding in both D1 and D2 nucleus accumbens medium spiny neurons of male and female mice. In addition, in silico analyses predict that ΔFOSB cooperatively regulates gene expression with homeobox and T-box transcription factors., Conclusions: These novel findings uncover key elements of ΔFOSB's molecular mechanisms in transcriptional regulation at baseline and in response to chronic cocaine exposure. Further characterization of ΔFOSB's collaborative transcriptional and chromatin partners specifically in D1 and D2 medium spiny neurons will reveal a broader picture of the function of ΔFOSB and the molecular basis of drug addiction., (Copyright © 2023 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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23. Transcriptional signatures of heroin intake and relapse throughout the brain reward circuitry in male mice.
- Author
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Browne CJ, Futamura R, Minier-Toribio A, Hicks EM, Ramakrishnan A, Martínez-Rivera FJ, Estill M, Godino A, Parise EM, Torres-Berrío A, Cunningham AM, Hamilton PJ, Walker DM, Huckins LM, Hurd YL, Shen L, and Nestler EJ
- Subjects
- Humans, Mice, Male, Animals, Genome-Wide Association Study, Brain, Reward, Recurrence, Heroin adverse effects, Opioid-Related Disorders
- Abstract
Opioid use disorder (OUD) looms as one of the most severe medical crises facing society. More effective therapeutics will require a deeper understanding of molecular changes supporting drug-taking and relapse. Here, we develop a brain reward circuit-wide atlas of opioid-induced transcriptional regulation by combining RNA sequencing (RNA-seq) and heroin self-administration in male mice modeling multiple OUD-relevant conditions: acute heroin exposure, chronic heroin intake, context-induced drug-seeking following abstinence, and relapse. Bioinformatics analysis of this rich dataset identified numerous patterns of transcriptional regulation, with both region-specific and pan-circuit biological domains affected by heroin. Integration of RNA-seq data with OUD-relevant behavioral outcomes uncovered region-specific molecular changes and biological processes that predispose to OUD vulnerability. Comparisons with human OUD RNA-seq and genome-wide association study data revealed convergent molecular abnormalities and gene candidates with high therapeutic potential. These studies outline molecular reprogramming underlying OUD and provide a foundational resource for future investigations into mechanisms and treatment strategies.
- Published
- 2023
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24. Transcriptional control of nucleus accumbens neuronal excitability by retinoid X receptor alpha tunes sensitivity to drug rewards.
- Author
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Godino A, Salery M, Durand-de Cuttoli R, Estill MS, Holt LM, Futamura R, Browne CJ, Mews P, Hamilton PJ, Neve RL, Shen L, Russo SJ, and Nestler EJ
- Subjects
- Mice, Male, Female, Animals, Nucleus Accumbens metabolism, Retinoid X Receptor alpha genetics, Retinoid X Receptor alpha metabolism, Neurons physiology, Receptors, Dopamine D1 metabolism, Reward, Mice, Inbred C57BL, Cocaine pharmacology, Mental Disorders metabolism
- Abstract
The complex nature of the transcriptional networks underlying addictive behaviors suggests intricate cooperation between diverse gene regulation mechanisms that go beyond canonical activity-dependent pathways. Here, we implicate in this process a nuclear receptor transcription factor, retinoid X receptor alpha (RXRα), which we initially identified bioinformatically as associated with addiction-like behaviors. In the nucleus accumbens (NAc) of male and female mice, we show that although its own expression remains unaltered after cocaine exposure, RXRα controls plasticity- and addiction-relevant transcriptional programs in both dopamine receptor D1- and D2-expressing medium spiny neurons, which in turn modulate intrinsic excitability and synaptic activity of these NAc cell types. Behaviorally, bidirectional viral and pharmacological manipulation of RXRα regulates drug reward sensitivity in both non-operant and operant paradigms. Together, this study demonstrates a key role for NAc RXRα in promoting drug addiction and paves the way for future studies of rexinoid signaling in psychiatric disease states., Competing Interests: Declaration of interests The authors declare no competing interests., (Copyright © 2023 Elsevier Inc. All rights reserved.)
- Published
- 2023
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25. CREB Binding at the Zfp189 Promoter Within Medium Spiny Neuron Subtypes Differentially Regulates Behavioral and Physiological Adaptations Over the Course of Cocaine Use.
- Author
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Teague CD, Picone JA, Wright WJ, Browne CJ, Silva GM, Futamura R, Minier-Toribio A, Estill ME, Ramakrishnan A, Martinez-Rivera FJ, Godino A, Parise EM, Schmidt KH, Pulido NV, Lorsch ZS, Kim JH, Shen L, Neve RL, Dong Y, Nestler EJ, and Hamilton PJ
- Subjects
- Animals, Mice, Mice, Inbred C57BL, Mice, Transgenic, Nucleus Accumbens, Receptors, Dopamine D1 genetics, Receptors, Dopamine D1 metabolism, Adaptation, Physiological genetics, Cocaine pharmacology, Cocaine metabolism, Cocaine-Related Disorders genetics, Medium Spiny Neurons metabolism, Promoter Regions, Genetic, Transcription Factors genetics, Transcription Factors metabolism
- Abstract
Background: Over the course of chronic drug use, brain transcriptional neuroadaptation is thought to contribute to a change in drug use behavior over time. The function of the transcription factor CREB (cAMP response element binding protein) within the nucleus accumbens (NAc) has been well documented in opposing the rewarding properties of many classes of drugs, yet the gene targets through which CREB causally manifests these lasting neuroadaptations remain unknown. Here, we identify zinc finger protein 189 (Zfp189) as a CREB target gene that is transcriptionally responsive to acute and chronic cocaine use within the NAc of mice., Methods: To investigate the role of the CREB-Zfp189 interaction in cocaine use, we virally delivered modified clustered regularly interspaced short palindromic repeats (CRISPR)/dCas9 constructs capable of selectively localizing CREB to the Zfp189 gene promoter in the NAc of mice., Results: We observed that CREB binding to the Zfp189 promoter increased Zfp189 expression and diminished the reinforcing responses to cocaine. Furthermore, we showed that NAc Zfp189 expression increased within D1 medium spiny neurons in response to acute cocaine but increased in both D1- and D2-expressing medium spiny neurons in response to chronic cocaine. CREB-mediated induction of Zfp189 potentiated electrophysiological activity of D1- and D2-expressing medium spiny neurons, recapitulating the known effect of CREB on these neurons. Finally, targeting CREB to the Zfp189 promoter within NAc Drd2-expressing neurons, but not Drd1-expressing neurons, was sufficient to diminish cocaine-conditioned behaviors., Conclusions: Together, these findings point to the CREB-Zfp189 interaction within the NAc Drd2+ neurons as a molecular signature of chronic cocaine use that is causal in counteracting the reinforcing effects of cocaine., (Copyright © 2022 Society of Biological Psychiatry. Published by Elsevier Inc. All rights reserved.)
- Published
- 2023
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26. Transcriptional signatures of heroin intake and seeking throughout the brain reward circuit.
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Browne CJ, Futamura R, Minier-Toribio A, Hicks EM, Ramakrishnan A, Martínez-Rivera F, Estill M, Godino A, Parise EM, Torres-Berrío A, Cunningham AM, Hamilton PJ, Walker DM, Huckins LM, Hurd YL, Shen L, and Nestler EJ
- Abstract
Opioid use disorder (OUD) looms as one of the most severe medical crises currently facing society. More effective therapeutics for OUD requires in-depth understanding of molecular changes supporting drug-taking and relapse. Recent efforts have helped advance these aims, but studies have been limited in number and scope. Here, we develop a brain reward circuit-wide atlas of opioid-induced transcriptional regulation by combining RNA sequencing (RNAseq) and heroin self-administration in male mice modeling multiple OUD-relevant conditions: acute heroin exposure, chronic heroin intake, context-induced drug-seeking following prolonged abstinence, and heroin-primed drug-seeking (i.e., "relapse"). Bioinformatics analysis of this rich dataset identified numerous patterns of molecular changes, transcriptional regulation, brain-region-specific involvement in various aspects of OUD, and both region-specific and pan-circuit biological domains affected by heroin. Integrating RNAseq data with behavioral outcomes using factor analysis to generate an "addiction index" uncovered novel roles for particular brain regions in promoting addiction-relevant behavior, and implicated multi-regional changes in affected genes and biological processes. Comparisons with RNAseq and genome-wide association studies from humans with OUD reveal convergent molecular regulation that are implicated in drug-taking and relapse, and point to novel gene candidates with high therapeutic potential for OUD. These results outline broad molecular reprogramming that may directly promote the development and maintenance of OUD, and provide a foundational resource to the field for future research into OUD mechanisms and treatment strategies.
- Published
- 2023
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27. Winter gifts for river ecosystems: A massive supply of earthworms in early winter.
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Futamura R, Furusawa C, and Okamiya H
- Abstract
Terrestrial resource pulses can significantly affect the community dynamics of freshwater ecosystems. Previously, its effect on the river community is considered to be stronger in summer, whereas weaker in winter when terrestrial invertebrates are less abundant. The movement of the terrestrial earthworms is triggered in winter, so they may be supplied to winter rivers as terrestrial resource pulse, but little is known about it. Here, we report that the massive numbers of the terrestrial earthworms were supplied intensively to an upstream of the small river in early winter. In particular, we found large numbers of megascolecid earthworms were supplied in an upstream of the small river in Northern Japan. Furthermore, we observed that supplied earthworms were consumed by salmonid fish species (masu salmon, white spotted char and rainbow trout) and aquatic invertebrates (gammarid amphipod, planarian flatworm, and stonefly larvae). These findings suggest that the terrestrial earthworms may play a key role in ecosystem functioning in winter when severe and other resources are scarce., Competing Interests: We have no conflict of interest., (© 2022 The Authors. Ecology and Evolution published by John Wiley & Sons Ltd.)
- Published
- 2022
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28. The long noncoding RNA FEDORA is a cell type- and sex-specific regulator of depression.
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Issler O, van der Zee YY, Ramakrishnan A, Xia S, Zinsmaier AK, Tan C, Li W, Browne CJ, Walker DM, Salery M, Torres-Berrío A, Futamura R, Duffy JE, Labonte B, Girgenti MJ, Tamminga CA, Dupree JL, Dong Y, Murrough JW, Shen L, and Nestler EJ
- Abstract
Women suffer from depression at twice the rate of men, but the underlying molecular mechanisms are poorly understood. Here, we identify marked baseline sex differences in the expression of long noncoding RNAs (lncRNAs), a class of regulatory transcripts, in human postmortem brain tissue that are profoundly lost in depression. One such human lncRNA, RP11-298D21.1 (which we termed FEDORA), is enriched in oligodendrocytes and neurons and up-regulated in the prefrontal cortex (PFC) of depressed females only. We found that virally expressing FEDORA selectively either in neurons or in oligodendrocytes of PFC promoted depression-like behavioral abnormalities in female mice only, changes associated with cell type-specific regulation of synaptic properties, myelin thickness, and gene expression. We also found that blood FEDORA levels have diagnostic implications for depressed women and are associated with clinical response to ketamine. These findings demonstrate the important role played by lncRNAs, and FEDORA in particular, in shaping the sex-specific landscape of the brain and contributing to sex differences in depression.
- Published
- 2022
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29. Elasticity of the Scalene Muscles in Collegiate Baseball Pitchers Using Shear Wave Elastography.
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Takaba K, Takenaga T, Tsuchiya A, Takeuchi S, Fukuyoshi M, Nakagawa H, Futamura H, Futamura R, Sugimoto K, Murakami H, and Yoshida M
- Abstract
Background: Thoracic outlet syndrome is more common in overhead athletes. The anterior and middle scalene muscles have been associated with thoracic outlet syndrome; however, the relationship between the elastic moduli of the scalene muscles and the overhead-throwing position has not been evaluated., Purpose: To investigate the elastic moduli of the anterior and middle scalene muscles in simulated throwing positions using shear wave elastography., Study Design: Descriptive laboratory study., Methods: We enrolled collegiate baseball players who underwent preseason medical checkups in January and February 2020. The anterior and middle scalene muscles were visualized in the short-axis view using ultrasound. In this view, the elastic moduli of the anterior and middle scalene muscles were measured using shear wave elastography in the following arm and neck positions: (1) adduction and neutral rotation of the shoulder (neutral), (2) 90° of abduction and external rotation of the shoulder (ABER), and (3) ABER with neck rotation toward the nonthrowing side (ABER+NR). Repeated-measures analysis of variance and a paired t test were used to compare the elastic modulus values among the 3 positions and between the 2 muscles, respectively., Results: Overall, 30 baseball players were included. In both scalene muscles, the elastic moduli were significantly greater in the ABER versus neutral position (anterior scalene: 14.4 ± 3.8 vs 9.4 ± 2.0 kPa, respectively [ P < .001]; middle scalene: 15.8 ± 5.0 vs 10.9 ± 3.4 kPa, respectively [ P < .001]). In the neutral position, the elastic modulus was significantly greater in the middle scalene than the anterior scalene (10.9 ± 3.4 vs 9.4 ± 2.0 kPa, respectively; P = .03). In the ABER+NR position, the elastic modulus was significantly greater in the anterior scalene than the middle scalene (18.1 ± 4.6 vs 15.8 ± 2.6 kPa, respectively; P = .03)., Conclusion: Because the ABER position was a simulation of the throwing position, these results indicate that this position could be associated with high elastic moduli of the scalene muscles, and both the anterior and middle scalene muscles may be involved., Competing Interests: The authors declared that there are no conflicts of interest in the authorship and publication of this contribution. AOSSM checks author disclosures against the Open Payments Database (OPD). AOSSM has not conducted an independent investigation on the OPD and disclaims any liability or responsibility relating thereto., (© The Author(s) 2022.)
- Published
- 2022
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30. Zero-Overpotential Redox Reactions of Quinone-Based Molecules Confined in Carbon Micropores.
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Takimoto D, Suzuki K, Futamura R, Iiyama T, Hideshima S, and Sugimoto W
- Abstract
Quinone-based aromatic compounds have been studied as electrode materials for various energy-storage devices. However, the relatively large activation barrier of the charge-transfer process of these redox-active molecules causes sluggish reactions and a decrease in energy efficiency. To lower the activation barrier, aromatic compounds must be strongly adsorbed on the electrode surface, preferably via π-π stacking interactions. Molecules in slit-shaped micropores strongly adsorb on the graphitic walls, thus experiencing unique micropore-confinement properties. In this study, the micropore-confinement effect is extended to the adsorption of quinone-based redox-active molecules in 0.8 nm slit-shaped micropores of activated carbon, which produces a drastic reduction in the activation barrier of the charge-transfer process and creates a zero-overpotential redox reaction. The property originates from the short distance (approximately 0.3 nm) between the quinone molecules and the graphitic wall due to the strong adsorption of the aromatic compound. Our results provide the first demonstration that the micropore-confinement effect can reduce and nearly eliminate the activation barrier of an electrochemical reaction. We also demonstrate the applicability of this approach via the charge/discharge performance of a two-electrode cell. Cells comprising the aromatic compound/activated carbon material as positive and negative electrodes exhibit a greater retention capacity than those without activated carbon. The technique described herein can guide the development of high-performance, rapid charging/discharging electrodes for energy-storage devices such as batteries, supercapacitors, and hybrid devices using organic materials.
- Published
- 2022
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31. Publisher Correction: Conducting linear chains of sulphur inside carbon nanotubes.
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Fujimori T, Morelos-Gómez A, Zhu Z, Muramatsu H, Futamura R, Urita K, Terrones M, Hayashi T, Endo M, Hong SY, Choi YC, Tománek D, and Kaneko K
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- 2022
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32. Size-dependent growth tactics of a partially migratory fish before migration.
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Futamura R, Morita K, Kanno Y, Kumikawa S, Matsuoka Y, Okuda A, Sugiyama H, Takahashi H, Uchida J, and Kishida O
- Subjects
- Animals, Body Size, Rivers, Animal Migration, Oncorhynchus growth & development
- Abstract
In many migratory species, smaller migrants suffer higher mortality rates during the risky migration. To minimize the size-selective mortality, migrants with smaller body sizes would need to accelerate growth rates or delay migration timing to attain a large enough body size prior to migration. To test these predictions, we investigated size-dependent patterns of growth rates and migration timing of juvenile masu salmon (Oncorhynchus masou) before their oceanic migration. We tracked uniquely marked individuals in a study population consisted of oceanic migrants and river-dwelling residents using mark-recapture surveys and PIT-tag antenna-reader system. Data supported our predictions about size-dependent growth rates and migration timing. For approximately 6 months before outmigration (i.e., between the decision of migration and the start of migration), eventual migrants grew more than residents if their initial size was smaller, but such a difference in growth rate diminished for fish with larger initial sizes. In addition, smaller eventual migrants delayed the timing of outmigration compared to larger individuals, to attain a larger body size in the river prior to migration. These results suggest that size-selective mortality during migration has shaped size-dependent patterns of the pre-migration growth in migratory masu salmon. Size-conditional changes in growth rate and duration of pre-migration period may be an adaptive tactic for the migratory animals., (© 2022. The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature.)
- Published
- 2022
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33. Predators mitigate the destabilising effects of heatwaves on multitrophic stream communities.
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Ross SRP, García Molinos J, Okuda A, Johnstone J, Atsumi K, Futamura R, Williams MA, Matsuoka Y, Uchida J, Kumikawa S, Sugiyama H, Kishida O, and Donohue I
- Subjects
- Biomass, Climate Change, Extinction, Biological, Ecosystem, Rivers
- Abstract
Amidst the global extinction crisis, climate change will expose ecosystems to more frequent and intense extreme climatic events, such as heatwaves. Yet, whether predator species loss-a prevailing characteristic of the extinction crisis-will exacerbate the ecological consequences of extreme climatic events remains largely unknown. Here, we show that the loss of predator species can interact with heatwaves to moderate the compositional stability of ecosystems. We exposed multitrophic stream communities, with and without a dominant predator species, to realistic current and future heatwaves and found that heatwaves destabilised algal communities by homogenising them in space. However, this happened only when the predator was absent. Additional heatwave impacts on multiple aspects of stream communities, including changes to the structure of algal and macroinvertebrate communities, as well as total algal biomass and its temporal variability, were not apparent during heatwaves and emerged only after the heatwaves had passed. Taken together, our results suggest that the ecological consequences of heatwaves can amplify over time as their impacts propagate through biological interaction networks, but the presence of predators can help to buffer such impacts. These findings underscore the importance of conserving trophic structure, and highlight the potential for species extinctions to amplify the effects of climate change and extreme events., (© 2021 John Wiley & Sons Ltd.)
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- 2022
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34. Ulnar Collateral Ligament Reconstruction With the Modified Jobe Technique in Baseball Pitchers.
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Yoshida M, Takenaga T, Takeuchi S, Takaba K, Tsuchiya A, Fukuyoshi M, Nakagawa H, Matsumoto Y, Saito M, Futamura H, Futamura R, Murakami H, and Sugimoto K
- Abstract
Background: Tearing and insufficiency of the ulnar collateral ligament (UCL) of the elbow result in valgus instability, which can lead to pain while throwing and decline in performance in overhead athletes., Purpose: To assess the clinical results of a modified UCL reconstruction technique using 1 bone hole in the ulna and 1 bone tunnel in the humerus in baseball players., Study Design: Case series; Level of evidence, 4., Methods: The inclusion criteria were medial elbow pain preventing effective playing, clinically medial elbow laxity, and magnetic resonance imaging results consistent with UCL injury. Patients who were engaged in other sports and in other positions in baseball except pitchers were excluded from this study. Our modified Tommy John procedure was performed via a muscle-splitting approach and an original single-bone-tunnel technique, using a suture anchor. After a minimum of 24 months, patients were evaluated using the Conway scale and the Timmerman-Andrews score., Results: Of 31 patients, 20 baseball pitchers (20 male: 5 high school, 5 collegiate, 8 nonprofessional, and 2 professional pitchers) were reviewed. The mean patient age at the time of operation was 21.9 years, and the mean postoperative follow-up period was 35.1 months (range, 24-66 months). The mean Timmerman-Andrews subjective score improved significantly from pre- to postoperatively (from 68.3 to 98.3; P < .05); the objective score also improved significantly (from 81.1 to 96.4; P = .01). No complications were detected at the latest follow-up. Overall, 19 patients were able to return to their preinjury level of sports or higher., Conclusion: UCL reconstruction with 1 bone hole in the ulna and 1 bone tunnel in the humerus demonstrated satisfactory results in baseball pitchers. Our modified technique was safe and achieved satisfactory clinical results, with a 95% rate of return to sports., Competing Interests: The authors declared that there are no conflicts of interest in the authorship and publication of this contribution. AOSSM checks author disclosures against the Open Payments Database (OPD). AOSSM has not conducted an independent investigation on the OPD and disclaims any liability or responsibility relating thereto., (© The Author(s) 2021.)
- Published
- 2021
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35. Adsorption separation of heavier isotope gases in subnanometer carbon pores.
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Ujjain SK, Bagusetty A, Matsuda Y, Tanaka H, Ahuja P, de Tomas C, Sakai M, Vallejos-Burgos F, Futamura R, Suarez-Martinez I, Matsukata M, Kodama A, Garberoglio G, Gogotsi Y, Karl Johnson J, and Kaneko K
- Abstract
Isotopes of heavier gases including carbon (
13 C/14 C), nitrogen (13 N), and oxygen (18 O) are highly important because they can be substituted for naturally occurring atoms without significantly perturbing the biochemical properties of the radiolabelled parent molecules. These labelled molecules are employed in clinical radiopharmaceuticals, in studies of brain disease and as imaging probes for advanced medical imaging techniques such as positron-emission tomography (PET). Established distillation-based isotope gas separation methods have a separation factor (S) below 1.05 and incur very high operating costs due to high energy consumption and long processing times, highlighting the need for new separation technologies. Here, we show a rapid and highly selective adsorption-based separation of18 O2 from16 O2 with S above 60 using nanoporous adsorbents operating near the boiling point of methane (112 K), which is accessible through cryogenic liquefied-natural-gas technology. A collective-nuclear-quantum effect difference between the ordered18 O2 and16 O2 molecular assemblies confined in subnanometer pores can explain the observed equilibrium separation and is applicable to other isotopic gases.- Published
- 2021
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36. Biocathode design with highly-oriented immobilization of multi-copper oxidase from Pyrobaculum aerophilum onto a single-walled carbon nanotube surface via a carbon nanotube-binding peptide.
- Author
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Sakamoto H, Futamura R, Tonooka A, Takamura E, Satomura T, and Suye SI
- Subjects
- Catalysis, Electrodes, Enzymes, Immobilized chemistry, Oxidoreductases chemistry, Peptides chemistry, Bioelectric Energy Sources, Enzymes, Immobilized metabolism, Nanotubes, Carbon chemistry, Oxidoreductases metabolism, Peptides metabolism, Pyrobaculum enzymology
- Abstract
Biofuel cells generate electric energy using an enzyme as a catalyst for an electrode but their stability and low battery output pose problems for practical use. To solve these problems, this study aimed to build a long-lasting and high-output biocathode as a catalyst using a highly stable hyperthermophilic archaeal enzyme, multi-copper oxidase, from Pyrobaculum aerophilum (McoP). To increase output, McoP was oriented and immobilized on single-walled carbon nanotubes (SWCNT) with a high specific surface area, and the electrode interface was designed to achieve highly efficient electron transfer between the enzyme and electrode. Type 1 copper (T1Cu), an electron-accepting site in the McoP molecule, is located near the C-terminus. Therefore, McoP was prepared by genetically engineering a CNT-binding peptide with the sequence LLADTTHHRPWT, at the C-terminus of McoP (McoP-CBP). We then constructed an electrode using a complex in which McoP-CBP was aligned and immobilized on SWCNT, and then clarified the effect of CBP. The amounts of immobilized enzymes on McoP-SWCNT and (McoP-CBP)-SWCNT complexes were almost equal. CV measurement of the electrode modified with both complexes showed 5.4 times greater current density in the catalytic reaction of the (McoP-CBP)-SWCNT/GC electrode than in the McoP-SWCNT/GC electrode. This is probably because CBP fusion immobilize the enzyme on SWCNTs in an orientational manner, and T1Cu, the oxidation-reduction site in McoP, is close to the electrode, which improves electron transfer efficiency., (© 2020 American Institute of Chemical Engineers.)
- Published
- 2021
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37. Structural mechanism of reactivation with steam of pitch-based activated carbon fibers.
- Author
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Yoshikawa Y, Teshima K, Futamura R, Tanaka H, Neimark AV, and Kaneko K
- Abstract
Customized micro- and mesoporous carbons are in high demand for ecofriendly technologies. Reactivation of the well-characterized pitch-based activated carbon fiber (ACF) can provide a clear understanding of the structural mechanism of steam activation, which would be helpful for designing better micro- and mesoporous carbons. ACFs were reactivated with steam at 973-1173 K. X-ray diffraction and Raman spectroscopy indicated that the stacking number of graphene-like layers of the pore wall decreased with an increase in the reactivation temperature. The average fiber diameter of the ACFs, which was measured via scanning electron microscopy, decreased with the increase in the reactivation temperature. The relationship between the decrease in the fiber diameter and the burn-off suggested that reactivation above 1023 K produced micropores inside the fiber. A deconvolution analysis of the pore-size distribution revealed the variation of the distribution. The peak difference was approximately 0.3 nm, depending on the reactivation temperature. These results indicate that reactivation with steam proceeds via the preferential one-by-one gasification of less-crystalline graphene-like units., Competing Interests: Declaration of Competing Interest The authors declare that they have no known competing financial interests or personal relationships that could have appeared to influence the work reported in this paper., (Copyright © 2020 Elsevier Inc. All rights reserved.)
- Published
- 2020
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38. Flux Growth and Magnetic Properties of Helimagnetic Hexagonal Ferrite Ba(Fe 1- x Sc x ) 12 O 19 Single Crystals.
- Author
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Utsumi S, Tanaka S, Maruyama K, Hatakeyama N, Itoh K, Koike J, Horikawa A, Iriyama H, Kanamaru H, Amako Y, Iiyama T, Futamura R, Kiyanagi R, Nakao A, Moriyama K, Ishikawa Y, and Momozawa N
- Abstract
Fabricating large, high-crystalline-quality single-crystal samples of hexagonal ferrite Ba(Fe
1- x Scx )12 O19 is the first important step to elucidating its helimagnetic structure and developing it for further applications. In this study, single crystals of Ba(Fe1- x Scx )12 O19 of various Sc concentrations x were successfully grown by the spontaneous crystallization method using Na2 O-Fe2 O3 flux. We determined the optimal starting composition of reagents for Ba(Fe1- x Scx )12 O19 growth as a function of x. In situ monitoring of the crystal nucleus generation accelerated the success of crystal growth. The obtained crystals comprised black and lamellate structures with a size of 13 mm × 8 mm × 2 mm and a surface of {001} orientation. X-ray diffraction and elemental analysis revealed that the obtained crystals were composed of single-phase Ba(Fe1- x Scx )12 O19 of high crystalline quality. The lattice constants a and c increased linearly with increasing x , thereby following Vegard's law. The temperature dependence of magnetization and the magnetization curves at 77 K of the x = 0.128 crystal exhibited behavior characteristics of helimagnetism. Neutron diffraction measurements of the x = 0.128 crystal exhibited magnetic satellite reflection peaks below 211 K, providing evidence that Ba(Fe1- x Scx )12 O19 behaves as a helimagnetic material., Competing Interests: The authors declare no competing financial interest.- Published
- 2020
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39. Unusual hygroscopic nature of nanodiamonds in comparison with well-known porous materials.
- Author
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Piña-Salazar EZ, Sakai T, Ōsawa E, Futamura R, and Kaneko K
- Abstract
Nanodiamond aggregates have interparticle pores of 4.5 nm on average, exhibiting porous nature involved in their water storage. This work studies the hygroscopic nature of porous nanodiamond aggregates by water absorption based on liquid water droplets. Nanodiamond aggregates show hydrophobicity from the water vapor adsorption. Surprisingly, porous nanodiamond aggregates quickly absorb water droplets at the bulk scale. The volume of absorbed liquid water is comparable to that of the water-absorbing clay Montmorillonite and higher than those of zeolites ZSM-5 and molecular sieve 5A. This hygroscopic nature of nanodiamonds is ascribed to the micro- and mesoporous structure of their aggregates and the special core-shell structure of each nanodiamond particle (wrapped by graphene-like carbon). The absorption rate of liquid water in the porous nanodiamonds is influenced by the surface wettability, while the hygroscopic capacity depends mainly on the hierarchical porosity., (Copyright © 2019 Elsevier Inc. All rights reserved.)
- Published
- 2019
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40. Nanoporosity Change on Elastic Relaxation of Partially Folded Graphene Monoliths.
- Author
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Chotimah N, Putri AD, Ono Y, Kento S, Hattori Y, Wang S, Futamura R, Urita K, Vallejos-Burgos F, Moriguchi I, Morimoto M, Cimino RT, Neimark AV, Sakai T, and Kaneko K
- Abstract
Fabrication of nanographene shows a promising route for production of designed porous carbons, which is indispensable for highly efficient molecular separation and energy storage applications. This process requires a better understanding of the mechanical properties of nanographene in their aggregated structure. We studied the structural and mechanical properties of nanographene monoliths compressed at 43 MPa over different times from 3 to 25 h. While in monoliths compressed over shorter time adsorption isotherms of Ar at 87 K or N
2 at 77 K exhibited a prominent hysteresis due to presence of predominant mesopores, compression for long time induces a low pressure hysteresis. On the other hand, compression for 25 h increases the microporosity evaluated by Ar adsorption, not by N2 adsorption, indicating that 25 h compression rearranges the nanographene stacking structure to produce ultramicropores that can be accessible only for Ar. TEM, X-ray diffraction, and Raman spectroscopic studies indicated that the compression for 25 h unfolds double-bent-like structures, relaxing the unstable nanographene stacked structure formed on the initial compression without nanographene sheets collapse. This behavior stems from the highly elastic nature of the nanographenes.- Published
- 2017
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41. Adsorption-desorption mediated separation of low concentrated D 2 O from water with hydrophobic activated carbon fiber.
- Author
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Ono Y, Futamura R, Hattori Y, Sakai T, and Kaneko K
- Abstract
The adsorption and desorption of D
2 O on hydrophobic activated carbon fiber (ACF) occurs at a smaller pressure than the adsorption and desorption of H2 O. The behavior of the critical desorption pressure difference between D2 O and H2 O in the pressure range of 1.25-1.80kPa is applied to separate low concentrated D2 O from water using the hydrophobic ACF, because the desorption branches of D2 O and H2 O drop almost vertically. The deuterium concentration of all desorbed water in the above pressure range is lower than that of water without adsorption-treatment on ACF. The single adsorption-desorption procedure on ACF at 1.66kPa corresponding to the maximum difference of adsorption amount between D2 O and H2 O reduced the deuterium concentration of desorbed water to 130.6ppm from 143.0ppm. Thus, the adsorption-desorption procedure of water on ACF is a promising separation and concentration method of low concentrated D2 O from water., (Copyright © 2017 Elsevier Inc. All rights reserved.)- Published
- 2017
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42. Partial breaking of the Coulombic ordering of ionic liquids confined in carbon nanopores.
- Author
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Futamura R, Iiyama T, Takasaki Y, Gogotsi Y, Biggs MJ, Salanne M, Ségalini J, Simon P, and Kaneko K
- Abstract
Ionic liquids are composed of equal quantities of positive and negative ions. In the bulk, electrical neutrality occurs in these liquids due to Coulombic ordering, in which ion shells of alternating charge form around a central ion. Their structure under confinement is far less well understood. This hinders the widespread application of ionic liquids in technological applications. Here we use scattering experiments to resolve the structure of a widely used ionic liquid (EMI-TFSI) when it is confined inside nanoporous carbons. We show that Coulombic ordering reduces when the pores can accommodate only a single layer of ions. Instead, equally charged ion pairs are formed due to the induction of an electric potential of opposite sign in the carbon pore walls. This non-Coulombic ordering is further enhanced in the presence of an applied external electric potential. This finding opens the door for the design of better materials for electrochemical applications.
- Published
- 2017
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43. Water Adsorption Property of Hierarchically Nanoporous Detonation Nanodiamonds.
- Author
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Pina-Salazar EZ, Urita K, Hayashi T, Futamura R, Vallejos-Burgos F, Włoch J, Kowalczyk P, Wiśniewski M, Sakai T, Moriguchi I, Terzyk AP, Osawa E, and Kaneko K
- Abstract
The detonation nanodiamonds form the aggregate having interparticle voids, giving a marked hygroscopic property. As the relationship between pore structure and water adsorption of aggregated nanodiamonds is not well understood yet, adsorption isotherms of N
2 at 77 K and of water vapor at 298 K of the well-characterized aggregated nanodiamonds were measured. HR-TEM and X-ray diffraction showed that the nanodiamonds were highly crystalline and their average crystallite size was 4.5 nm. The presence of the graphitic layers on the nanodiamond particle surface was confirmed by the EELS examination. The pore size distribution analysis showed that nanodiamonds had a few ultramicropores with predominant mesopores of 4.5 nm in average size. The water vapor adsorption isotherm of IUPAC Type V indicates the hydrophobicity of the nanodiamond aggregates, with the presence of hydrophilic sites. Then the hygroscopic nature of nanodiamonds should be associated with the surface functionalities of the graphitic shell and the ultramicropores on the mesopore walls.- Published
- 2017
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44. Essential Role of Viscosity of SWCNT Inks in Homogeneous Conducting Film Formation.
- Author
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Kukobat R, Hayashi T, Matsuda T, Sunaga M, Futamura R, Sakai T, and Kaneko K
- Abstract
Newly developed inorganic single-wall carbon nanotube (SWCNT) inks of the Zn/Al complex and colloidal silica give a quite homogeneous SWCNT film on the polyethylene terephthalate (PET) substrate by the bar-coating method, whereas the surfactant-based SWCNT inks of sodium dodecyl sulfonate (SDS) and sodium dodecyl benzene sulfonate (SDBS) cannot give a homogeneous film. The key properties of SWCNT inks were studied for the production of homogeneous SWCNT films. The contact angle and surface tension of the inorganic dispersant-based SWCNT inks were 70° and 72 mN m(-1), respectively, being close to those of water (71.5° and 71 mN m(-1)). The viscosity was significantly higher than that of water (0.90 mPa·s), consequently, providing sufficient wettability, spreadability, and slow drying of the ink on the substrate, leading to homogeneous film formation. On the other hand, the surfactant dispersant-aided SWCNT inks have the contact angle and surface tension twice lower than the inorganic dispersant-based SWCNT inks, guaranteeing better wettability and spreadability than the inorganic dispersant-based inks. However, the small viscosity close to that of water induces a heterogeneous flow of SWCNT ink on rapid drying, leading to inhomogeneous film formation.
- Published
- 2016
- Full Text
- View/download PDF
45. Role of the organic linker in the early stages of the templated synthesis of PMOs.
- Author
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Futamura R, Jorge M, and Gomes JR
- Subjects
- Molecular Dynamics Simulation, Organosilicon Compounds chemistry, Porosity, Surface Properties, Water chemistry, Bromides chemistry, Organosilicon Compounds chemical synthesis, Surface-Active Agents chemistry
- Abstract
Classical MD simulations for surfactant-bromide-water solutions containing several organosilicate precursors show that the presence or absence of molecular-scale periodicity in the pore walls of PMOs is dictated by the strength of the surfactant micelle-organosilica interaction and by the relative flexibility and orientation of the organic linker.
- Published
- 2013
- Full Text
- View/download PDF
46. Conducting linear chains of sulphur inside carbon nanotubes.
- Author
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Fujimori T, Morelos-Gómez A, Zhu Z, Muramatsu H, Futamura R, Urita K, Terrones M, Hayashi T, Endo M, Hong SY, Choi YC, Tománek D, and Kaneko K
- Abstract
Despite extensive research for more than 200 years, the experimental isolation of monatomic sulphur chains, which are believed to exhibit a conducting character, has eluded scientists. Here we report the synthesis of a previously unobserved composite material of elemental sulphur, consisting of monatomic chains stabilized in the constraining volume of a carbon nanotube. This one-dimensional phase is confirmed by high-resolution transmission electron microscopy and synchrotron X-ray diffraction. Interestingly, these one-dimensional sulphur chains exhibit long domain sizes of up to 160 nm and high thermal stability (~800 K). Synchrotron X-ray diffraction shows a sharp structural transition of the one-dimensional sulphur occurring at ~450-650 K. Our observations, and corresponding electronic structure and quantum transport calculations, indicate the conducting character of the one-dimensional sulphur chains under ambient pressure. This is in stark contrast to bulk sulphur that needs ultrahigh pressures exceeding ~90 GPa to become metallic.
- Published
- 2013
- Full Text
- View/download PDF
47. Negative thermal expansion of water in hydrophobic nanospaces.
- Author
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Futamura R, Iiyama T, Hamasaki A, and Ozeki S
- Abstract
The density and intermolecular structure of water in carbon micropores (w = 1.36 nm) are investigated by small-angle X-ray scattering (SAXS) and X-ray diffraction (XRD) measurements between 20 K and 298 K. The SAXS results suggest that the density of the water in the micropores increased with increasing temperature over a wide temperature range (20-277 K). The density changed by 10%, which is comparable to the density change of 7% between bulk ice (I(c)) at 20 K and water at 277 K. The results of XRD at low temperatures (less than 200 K) show that the water forms the cubic ice (I(c)) structure, although its peak shape and radial distribution functions changed continuously to those of a liquid-like structure with increasing temperature. The SAXS and XRD results both showed that the water in the hydrophobic nanospaces had no phase transition point. The continuous structural change from ice I(c) to liquid with increasing temperature suggests that water shows negative thermal expansion over a wide temperature range in hydrophobic nanospaces. The combination of XRD and SAXS measurements makes it possible to describe confined systems in nanospaces with intermolecular structure and density of adsorbed molecular assemblies.
- Published
- 2012
- Full Text
- View/download PDF
48. Inertial acceleration as a measure of linear vection: an alternative to magnitude estimation.
- Author
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Carpenter-Smith TR, Futamura RG, and Parker DE
- Subjects
- Adult, Attention, Dark Adaptation, Discrimination Learning, Female, Humans, Male, Postural Balance, Psychophysics, Acceleration, Kinesthesis, Motion Perception, Optical Illusions
- Abstract
The present study focused on the development of a procedure to assess perceived self-motion induced by visual surround motion--vection. Using an apparatus that permitted independent control of visual and inertial stimuli, prone observers were translated along their head x-axis (fore/aft). The observers' task was to report the direction of self-motion during passive forward and backward translations of their bodies coupled with exposure to various visual surround conditions. The proportion of "forward" responses was used to calculate each observer's point of subjective equality (PSE) for each surround condition. The results showed that the moving visual stimulus produced a significant shift in the PSE when data from the moving surround condition were compared with the stationary surround and no-vision condition. Further, the results indicated that vection increased monotonically with surround velocities between 4 and 40 degrees/sec. It was concluded that linear vection can be measured in terms of changes in the amplitude of whole-body inertial acceleration required to elicit equivalent numbers of "forward" and "backward" self-motion reports.
- Published
- 1995
- Full Text
- View/download PDF
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