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• i-RAT (https://i.rat-net) is an APSIM-based interactive web application for sugarcane growers. • Users can easily conduct 'what-if' analyses without needing to setup APSIM-Sugar. • It assesses the impacts of changed irrigation practices on revenue, productivity, water quality, carbon/nitrogen cycles, and greenhouse gas emissions. • i-RAT promotes sustainable technologies for enhanced irrigation practices. Water pollution and climate change are among the greatest threats to the iconic Great Barrier Reef (GBR). To improve the GBR's long-term outlook, making improvements on these fronts is required. Owing to the complex interactions between soils, climate, and farm management, a tool is needed to guide agricultural land managers about which management practice changes are more likely to deliver improved water quality and climate resilience outcomes whilst maintaining profitability. Using concepts drawn from social studies of science and technology, a 'discussion' support system (DSS) named I rrigation R apid A ssessment T ool (i-RAT) was developed through participatory processes designed to enhance co-learning from the development of this DSS. i-RAT is a rapid assessment-visualisation tool in an interactive web application (https://i-rat.net) to visualise the impacts of changed irrigation practices for sugarcane farmers and extension staff. Specifically, i-RAT compares these impacts regarding farm economics, water quality, productivity, carbon and nitrogen cycles, and greenhouse gas emission. The core of i-RAT is the sugarcane module from the Agricultural Production Systems sIMulator (APSIM) modelling platform. i-RAT was first developed for the Burdekin sugarcane growing region in Queensland (Australia's largest sugarcane producing region). Various soil types and management scenarios representing farming practices in the Burdekin region were used for simulations (1971–2021) to generate a datacube. In this paper, we describe how fundamental learnings about more (drought) resilient farming systems and more sustainable irrigation practices can be extracted from i-RAT. Details of the participatory approach with research and industry partners that informed the design and function of i-RAT and how APSIM was set up and parameterised are described. A 'what-if' analysis demonstrated the i-RAT features and application. [ABSTRACT FROM AUTHOR]

This paper investigates the perceived well-being of residents of two coastal rural areas located in the central part of the Great Barrier Reef region in Australia. Typically, well-being studies concentrate on collating data from respondents about their perceptions of levels of satisfaction on specific predetermined points. However, recording respondents' satisfactions with various contributors to their well-being does not provide researchers with an indication of how important those contributors are to the respondents. This paper presents an approach to the analysis of well-being that combines the perceived importance of the well-being factors with the reported levels of satisfaction with the factor, aggregated to a regional level. A total of 372 individuals were asked to comment on how satisfied they were with twenty-seven well-being factors from the domains of society, the natural environment, and the economy and services. The highest reported satisfaction rates were associated with family relations, family safety, family health, family education levels, and work (>75%). Information about the perceived importance of the well-being factors was also recorded and combined with information about levels of satisfaction, thus creating an index of dissatisfaction—an index that allows one to identify an 'action list', or set of regional priorities that, if addressed by policy makers, has the potential to enhance regional well-being. Several high-scoring factors in the index, such as condition of the landscape and beaches and access to nature, came from the domain of the natural environment, indicating the importance of integrated approaches to well-being that also include environmental concerns. [ABSTRACT FROM AUTHOR]

This paper proposes using an adaptive management approach to achieve water quality improvement in large catchments with multiple diffuse pollutant issues. Adaptive management involves attention to process, and commitment to continually improving knowledge and practice. It also requires an appreciation of differences in understanding of various stakeholders and an ongoing commitment to learning. Based on research with the Burdekin Dry Tropics regional Natural Resource Management group, the paper shows how the acquisition of knowledge about Water Quality Management can be an aim in itself, rather than an activity peripheral to the planning process. To this end, the paper describes the methods used to elicit stakeholders’ understandings, explores the variation in understandings between key stakeholders, and describes a process used to incorporate the various views in an adaptive management framework for managing water quality. The research findings reveal the importance of process and participation for adaptive management and suggest that success can be judged in terms of learning outcomes. [ABSTRACT FROM AUTHOR]

The Great Barrier Reef Marine Park was established to provide for conservation and ecologically sustainable multiple use of 344,400 km of a large marine ecosystem. Management is based on multiple use, with zoning as a fundamental component of marine spatial planning. The legislative framework, including a specific Act and Regulations, address the objectives of ecosystem-based, integrated management of human uses and impacts consistent with best contemporary understanding of biological diversity. Zoning is one of a suite of management tools that include other spatial and temporal management tools and non-spatial measures including public education, community engagement, codes of environmental best practice, industry partnerships and economic instruments. The first section of the Great Barrier Reef Marine Park came into operation in 1981 and the most recent zoning came into operation in mid 2004. The paper discusses some common misunderstandings about zoning and identifies lessons that appear relevant for others addressing management and use of marine ecosystems and natural resources. [ABSTRACT FROM AUTHOR]

Summary: We consider estimating the total load from frequent flow data but less frequent concentration data. There are numerous load estimation methods available, some of which are captured in various online tools. However, most estimators are subject to large biases statistically, and their associated uncertainties are often not reported. This makes interpretation difficult and the estimation of trends or determination of optimal sampling regimes impossible to assess. In this paper, we first propose two indices for measuring the extent of sampling bias, and then provide steps for obtaining reliable load estimates that minimizes the biases and makes use of informative predictive variables. The key step to this approach is in the development of an appropriate predictive model for concentration. This is achieved using a generalized rating-curve approach with additional predictors that capture unique features in the flow data, such as the concept of the first flush, the location of the event on the hydrograph (e.g. rise or fall) and the discounted flow. The latter may be thought of as a measure of constituent exhaustion occurring during flood events. Forming this additional information can significantly improve the predictability of concentration, and ultimately the precision with which the pollutant load is estimated. We also provide a measure of the standard error of the load estimate which incorporates model, spatial and/or temporal errors. This method also has the capacity to incorporate measurement error incurred through the sampling of flow. We illustrate this approach for two rivers delivering to the Great Barrier Reef, Queensland, Australia. One is a data set from the Burdekin River, and consists of the total suspended sediment (TSS) and nitrogen oxide (NO x ) and gauged flow for 1997. The other dataset is from the Tully River, for the period of July 2000 to June 2008. For NO x Burdekin, the new estimates are very similar to the ratio estimates even when there is no relationship between the concentration and the flow. However, for the Tully dataset, by incorporating the additional predictive variables namely the discounted flow and flow phases (rising or recessing), we substantially improved the model fit, and thus the certainty with which the load is estimated. [Copyright &y& Elsevier]

Abstract: Skeletal density and porosity characteristics are key parameters for investigations into scleractinian coral growth and for assessing the effects of a range of anthropogenic influences on coral reefs. Typically, skeletal density is measured by using planar X-rays of thin slabs cut from mound-shaped colonies or, for branching forms, by using methods based on Archimedean principles. This paper describes a novel non-destructive technique based on micro-computed tomography (micro-CT) to measure porosity of branching coral skeleton. This approach incorporates methods for segmenting internal and external portions of branch and for distinguishing between skeleton and air, whilst accounting for the effects of beam hardening. Measurements were obtained from colonies of branching Acropora pulchra collected across a reef-flat transect at King Reef, central nearshore Great Barrier Reef. The results show significant variation in porosity within and among branches sampled from individual colonies, but not within a reef-flat transect. Micro-CT techniques yield comparable results to traditional methods based on Archimedean principles, but offer advantages in their suitability for a wider range of coral specimens because of the non-destructive nature of the technique and in their more rigorous control of model parameters that can bias results. [ABSTRACT FROM AUTHOR]

Summary: This paper presents a tool for documenting and monitoring water use benefits in the Great Barrier Reef catchments that allows temporal and spatial comparison along the region. Water, water use benefits and water allocations are currently receiving much attention from Australian policy makers and conservation practitioners. Because of the inherent complexity and variability in water quality, it is essential that scientific information is presented in a meaningful way to policy makers, managers and ultimately, to the general public who have to live with the consequences of the decisions. We developed an inexpensively populated and easily understandable water use benefit index as a tool for community-based monitoring of water related trends in the Great Barrier Reef region. The index is developed based on a comparative list of selected water-related indices integrating attributes across physico-chemical, economic, social, and ecological domains currently used in the assessment of water quality, water quantity and water use benefits in Australia. Our findings indicate that the proposed index allows the identification of water performance indicators by temporal and spatial comparisons. Benefits for decision makers and conservation practitioners include a flexible way of prioritization towards the domain with highest concern. The broader community benefits from a comprehensive and user-friendly tool, communicating changes in water quality trends more effectively. [ABSTRACT FROM AUTHOR]

Summary: Poor land condition resulting from unsustainable grazing practices can reduce enterprise profitability and increase water, sediment and associated nutrient runoff from properties and catchments. This paper presents the results of a 6year field study that used a series of hillslope flume experiments to evaluate the impact of improved grazing land management (GLM) on hillslope runoff and sediment yields. The study was carried out on a commercial grazing property in a catchment draining to the Burdekin River in northern Australia. During this study average ground cover on hillslopes increased from ∼35% to ∼75%, although average biomass and litter levels are still relatively low for this landscape type (∼60 increasing to 1100kg of dry matter per hectare). Pasture recovery was greatest on the upper and middle parts of hillslopes. Areas that did not respond to the improved grazing management had <10% cover and were on the lower slopes associated with the location of sodic soil and the initiation of gullies. Comparison of ground cover changes and soil conditions with adjacent properties suggest that grazing management, and not just improved rainfall conditions, were responsible for the improvements in ground cover in this study. The ground cover improvements resulted in progressively lower runoff coefficients for the first event in each wet season, however, runoff coefficients were not reduced at the annual time scale. The hillslope annual sediment yields declined by ∼70% on two out of three hillslopes, although where bare patches (with <10% cover) were connected to gullies and streams, annual sediment yields increased in response to higher rainfall in latter years of the study. It appears that bare patches are the primary source areas for both runoff and erosion on these hillslopes. Achieving further reductions in runoff and erosion in these landscapes may require management practices that improve ground cover and biomass in bare areas, particularly when they are located adjacent to concentrated drainage lines. [Copyright &y& Elsevier]

Summary: In many agricultural regions investments are made into improved land management and catchment restoration with the aim of reducing sediment and nutrient delivery to downstream water bodies. This paper presents the results of an 8year field study that evaluated the impact of improved grazing land management (GLM) on a 14km2 sub-catchment of the Burdekin River in northern Australia. Land condition recovery and changes to runoff and sediment yield were measured on hillslopes (using three flumes) and at the end of the catchment (using automatic water sampling). Ground cover was monitored at the beginning of the wet season at hillslope and catchment scales using direct measurement and Quickbird satellite imagery. At the catchment scale, improved GLM resulted in an increase in mean ground cover between 2003 and 2007, relative to a control grazing property. However, the total suspended sediment yield from hillslopes did not decline due to the disproportionately high yields from low (<10%) cover sites particularly in high runoff years. In 2007, when there was above-average rainfall, 97% of the hillslope derived fine sediment was coming from less than 3% of the catchment. Catchment sediment yield also increased, associated with higher rainfall and runoff in latter years of the study. In years of above-average rainfall, it is estimated that less than 40% of catchment sediment yield was derived from hillslope erosion. Channel erosion is considered to contribute the remaining sediment. Rehabilitation of hillslope scalds and gullies is likely to be an important companion to improved GLM to reduce catchment fine sediment yields in this landscape. Evaluation of gully and hillslope scald rehabilitation techniques is required, including the economic feasibility of such options. [Copyright &y& Elsevier]

New regionalism encompasses a diversity of approaches to address regional planning problems. Within Australia, the Great Barrier Reef Water Quality Protection Plan was developed to enhance water quality within the World Heritage-listed Great Barrier Reef, and the plan gave responsibility to regional, natural resource management bodies to undertake several actions. This paper evaluates these initiatives in the light of the emerging theory of new regionalism and highlights six main lessons: up-scaling of the catchment approach to a reef-wide approach is essential in order to improve water quality, but must be complemented by cross-regional collaboration; new governance and institutional arrangements and strengthened partnerships must be effectively integrated; culture and history are important in determining the most effective management approaches; pilot projects must move to comprehensive and strategic implementation; science is important but needs to incorporate other branches of knowledge; and economic incentives are important in encouraging the implementation of best practices, but delivery needs to be flexible. We conclude that the new regional approach is appropriate for addressing complex, multi-scale problems such as water quality, and has incorporated several key principles of new regionalism, but that the process must move quickly to a higher level of commitment and application. [ABSTRACT FROM AUTHOR]

Abstract: Tropical cyclones affect storm-dominated sediment transport processes that characterise Holocene shelf deposits in many shelf environments. A summary of cyclone-associated deposits in the Great Barrier Reef published by Larcombe and Carter [2004. Cyclone pumping, sediment partitioning and the development of the Great Barrier Reef shelf system: a review. Quaternary Science Reviews 23, pp. 107–135 indicates a pervasive northwards orientation of deposits on the lee side of reefs and other obstacles. In this paper, we describe the geomorphology of reef talus deposits found in the Gulf of Carpentaria and Arafura Sea, Australia, that we attribute to tropical cyclones. The orientation of these deposits is also indicative of a consistent, along-coast transport pathway. The deposits are located on the leeward side of submerged coral reefs; they are up to 10m in thickness, comprised of re-worked carbonate sand and gravel and radiocarbon dating indicates that they are of Holocene age. An explanation for the consistent along-coast cyclone transport pathway is presented based on previously published hydrodynamic modelling results. These models illustrate how currents generated by the passage of a cyclone are asymmetric in plan view, such that stronger flows are generated between the eye of the cyclone and the coast. The result of the passage of many cyclones over geologic timescales is a net along-coast sediment transport pathway located on the inner- to mid-shelf, possibly extending over the entire length of northern Australia''s coastline. This process provides an explanation for the observed sediment transport patterns on modern tropical continental shelves, as well as a basis for the interpretation of ancient tropical shelf deposits. [Copyright &y& Elsevier]

Collecting raw data from a wireless sensor network for environmental monitoring applications can be a difficult task due to the high energy consumption involved. This is especially difficult when the application requires specialized sensors that have very high energy consumption, e.g. hydrological sensors for monitoring marine environments. This paper introduces a technique for reducing energy consumption by minimizing sensor sampling operations. In addition, we illustrate how a randomized algorithm can be used to improve temporal coverage such that the time between the occurrence of an event and its detection can be minimized. We evaluate our approach using real data collected from a sensor network deployment on the Great Barrier Reef. [ABSTRACT FROM AUTHOR]

Abstract: Dr Jack Handyside Barnes (1922–1985) was one of the small and elite group of Pacific marine toxinologists whose work was characterised by an uncompromising rugged persona, a focussed resolve to solve challenging problems of human clinical envenomation, and who conducted curiosity-driven research under conditions of scientific isolation. He was a pioneering advocate for the preservation of marine heritage, particularly that of the Great Barrier Reef. A former military commando who later became a general medical practitioner with extensive surgical and obstetric skills, in 1947 he was appointed the Medical Superintendent of Thursday Island in the Torres Strait. Later (from January 1953), he worked indefatigably as a general medical practitioner in Cairns, in tropical North Australia. For four decades (1945–1985), Jack Barnes undertook detailed laboratory, clinical and field research into invertebrate envenomation, particularly medusan toxinology. In 1960 he discovered the species responsible for the Irukandji syndrome, a small carybdeid named Carukia barnesi in his honour. He invented the research technique for the extraction of venom from the world''s most venomous creature, the Pacific box Jellyfish, Chironex fleckeri. By 1960, he had published taxonomic details of nematocyst structure and clinical envenomation details consequent upon stings by Physalia, Cyanea, Chironex, Chiropsalmus and Carukia. This paper is a précis of the chronology of his life, contributions and influence. [Copyright &y& Elsevier]

The north-east Australian margin is the largest modern example of a tropical mixed siliciclastic/carbonate depositional system, with an outer shelf hosting the Great Barrier Reef (GBR) and an inner shelf dominated by fluvially sourced siliciclastic sediment wedges. The long-term interplay between these sediment components and sea level is recorded in the Queensland Trough, a 1–2 km deep N–S elongate basin situated between the GBR platform and the Queensland Plateau. In this paper, 154 samples from 45 surface grabs and six well-dated piston cores were analysed for total carbonate content, carbonate mineralogy and Sr concentration to establish spatial and temporal patterns of carbonate accumulation in the Queensland Trough over the last 300 kyr. Surface carbonate contents are lowest on the inner-shelf (<5%) and in the trough axis (<60%) because of siliciclastic dilution. Carbonate on the shelf is mostly Sr-rich aragonite and high-Mg calcite (HMC), whereas that in the basin is mostly low-Mg calcite. Once normalized to remove the effects of siliciclastic dilution, surface Sr-rich aragonite and HMC abundances decrease linearly to background levels ≈ 100 km seaward of the shelf edge. Core samples show that, over time, normalized aragonite and Sr abundances are greatest during periods of shelf flooding and lowest when sea level drops below the shelf edge. This is consistent with changes in the production of coral and calcareous algae, and the shedding of their debris from the shelf. Interestingly, normalized HMC concentrations on the slope peak during periods of major transgression, perhaps because of maximum off-shelf transport from inter-reef areas or intermediate water dissolution. After accounting for siliciclastic dilution, there are strong similarities in both spatial and temporal patterns of carbonate minerals between slopes and basins of the north-east Australian margin and those of pure carbonate margins such as the Bahamas. A limited set of basic processes, including the formation and breakdown of carbonate on the shelf, the transport of carbonate off the shelf and eustatic sea level, probably controls carbonate accumulation in slope and basin settings of tropical environments, irrespective of proximal siliciclastic sediment sources. [ABSTRACT FROM AUTHOR]

Presents a paper on gonad development and evidence of protogyny in the red-throat emperor Lethrinus (L.) miniatus on the Great Barrier Reef, Queensland. Concurrent degeneration of all oocytes and proliferation of spermatocysts near lamellae in transitional L. miniatus; Implications of the presence of spermatocysts in the females; Unusual characteristics of transitional L. miniatus.

This paper investigates the use of aesthetic value as a criterion by which the significance of heritage places is assessed. It is argued that current heritage management practice has not engaged with the extensive discourse relating to aesthetics, and therefore confines aesthetics to a particular class and culture, and an inert view of only one of our sensory experiences. Historical records relating to the Great Barrier Reef are used to show how aesthetic appreciation of the area has changed over time.The data suggest that the failure to recognise an aesthetic that is primarily non-visual can lead to changes in landscape and loss of associated value. It also suggests that aesthetic values change rapidly and are influenced by social and technological factors. [ABSTRACT FROM AUTHOR]

Australian and Queensland Government's Reef 2050 Water Quality Improvement Plan has set targets for improving the water quality entering the Great Barrier Reef lagoon. Given the large public investment and the deficit of data linking on-farm land management to changes in environmental outcomes, there is a need for a robust and efficient methods of quantifying links between land management and water quality. This paper explores a pragmatic approach to making this link using available data. We demonstrate that a simple parameterisation process is suitable for estimating hydrology and water quality across a wide range of land uses and management practices in agricultural landscapes. However, a manually calibrated model may still require the analysis of parameters to reduce error variances and evaluate uncertainties. Confidence in estimating hydrology and water quality in descending order is: runoff, sediment, nitrogen, phosphorous, and pesticide losses, reflecting the availability of data and inherent error propagation. • A pragmatic modelling by Howleaky is suitable to link management to water quality. • A manually calibrated model may still require a reduction in error variances. • Data availability and inherent error propagation determined confidence in modelling. [ABSTRACT FROM AUTHOR]

This article describes 3D medium (4km) and high (500m) horizontal resolution ocean models developed for the Coral Sea with a particular focus on the Great Barrier Reef lagoon. The medium resolution model is underpinning a 10 year reanalysis and a forecast demonstrator system for maritime monitoring. The ocean models have been developed to assist the management of the Great Barrier Reef given the existence of a number of stressors acting on the reef. The presented models aim to represent physical stressors that include thermal, salinity and flooding rivers. The river discharge is tracked by passive and age tracers. They can provide concentrations to identify the area/volume influenced by flood water. This paper gives an overview of the forward non-linear models with the aim to assess their performance. The models have been evaluated over a two year period spanning January 2009–March 2011 including the 2010/2011 La Nina and the advent of Tropical Cyclone Yasi in early 2011 that contributed to one of the largest river discharge events recorded over northern Queensland. The models' performance is investigated on a full domain scale via means of satellite sea surface temperature (SST), expendable bathythermograph (XBT) and drifter data. Over the shelf and the Great Barrier Reef lagoon, available tide gauges, Ocean Colour, Chlorophyll-a and Queensland's Integrated Marine Observing System (QIMOS) mooring data of temperature, salinity and velocity have been used to assess the models. Results suggest that the high resolution model gives better statistics in terms of mean absolute deviation and bias compared to the medium resolution model for subsurface temperature and salinity over the deep ocean. Moreover, sea surface temperature performance is similar for both models. Over the lagoon and shelf both models' performance is mixed. The high resolution model displays a consistent warm bias on the order of 0.3 °C over the shallow well mixed stations throughout the year. However, the 4km model displays larger variability in this region. It tends to be too warm in summer and too cool in winter when compared to moorings. Modelled velocities are assessed via means of the QIMOS moorings. Overall the high resolution model fares better in terms of current direction with an average veering of 13° vs. 22°. The models' performance is comparable in terms of current speed over the shallow moorings. However, the high resolution model is better equipped to represent steeper shelves and this results at times in better performance for velocity and temperature, particularly over Palm Passage. A large focus has been placed on including and assessing passive tracer dynamics emanating from river discharge. 25 river sources have been added across the models domain together with a set of one-dimensional channels representing the volume flux of brine. Two case studies are presented to demonstrate the models' ability to reproduce mean features of observed plumes. A major river discharge event has been examined in further detail. Both models are able to reproduce the low salinity signal present in the observations in the upper level to a satisfactory degree. The 4km model matches the observed strength and duration of the fresh water plume substantially better than the high resolution model in this case. • High and medium resolution ocean models for the Great Barrier Reef are presented. • Modelled passive and age tracers are compared to observed river plumes. • Intrusive upwelling onto the Great Barrier Reef may be affected by model resolution. • Horizontal model resolution affects performance over the Coral Sea. [ABSTRACT FROM AUTHOR]

The article discusses several papers published within the issue including one by Sharma and colleagues regarding the three-dimensional (3D) attachment of gold nanoparticles to DNA networks, one by Deshpande and colleagues regarding the insulating behavior of nanotubes, and one by De'ath and colleagues regarding the rate of calcification of coral from the Great Barrier Reef of Australia.