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The genus Elsinoe contains many aggressive pathogens of a wide range of plants, many of which are economically important. These fungal pathogens cause serious scab diseases affecting various plant parts, impacting plant vigour, yield and market value. While studies on Elsinoe species have predominantly focused on their taxonomy, there is a conspicuous gap in knowledge of these fungi from a plant pathology perspective. In this review, we draw together and critically evaluate the existing, but rather fragmented, research on the taxonomic status, phylogenetic relationships, host range, as well as the biology and epidemiology of Elsinoe species. Our aim is primarily to augment the existing understanding of the global significance of Elsinoe species, and furthermore, to shed light on the escalating prominence of scab diseases caused by species in a fungal genus that has been known for over 100 years but remains relatively poorly understood and somewhat enigmatic. [ABSTRACT FROM AUTHOR]

Canary Island date palm, Phoenix canariensis, is a popular ornamental species commonly planted in urban areas worldwide, including South Africa. In November 2023, symptoms typical of Fusarium wilt were detected on ornamental palms at the Waterfront in Cape Town, Western Cape Province, South Africa. Samples were collected from three wilting palms with one‐sided frond death and pink sporulation on the bark. Isolations to culture media yielded two fungal species, which were confirmed based on DNA sequence data as Fusarium oxysporum f.sp. canariensis (Foc) and Nalanthamala vermoesenii. Fusarium wilt, caused by Foc, is among the most serious diseases of these palms. There is no effective treatment for this vascular wilt disease and infected palms inevitably die. Pink rot, caused by N. vermoesenii, is commonly found as a secondary infection associated with Fusarium wilt in P. canariensis. This is the first detection of the Fusarium wilt and pink rot pathogens in South Africa. [ABSTRACT FROM AUTHOR]

Sporotrichosis is a disease that arises from a fungal infection caused by members of the Ascomycete genus Sporothrix. The disease has a unique history in South Africa, due to an association with gold mines, where large numbers of mine workers were infected in the 1930s and 1940s. This was likely driven by hot humid conditions and timber supports used in these mine shafts. Furthermore, the disease is the most common subcutaneous fungal infection amongst the general population in South Africa, and the large number of immunocompromised individuals increases the public health risk in the country. Sporothrix is a genus in the Ophiostomatales, a fungal order primarily associated with environmental habitats. Unsurprisingly, sporotrichosis therefore has a documented history of sapronotic transmission from contaminated plant material. This review provides insights into the understanding of sporotrichosis and Sporothrix species, with a particular emphasis on the South African situation. We highlight knowledge gaps, particularly regarding the ecological factors influencing the occurrence and distribution of these species, which in turn affect the patterns of sporotrichosis. We also emphasise a need for ongoing proactive research and surveillance to prevent future outbreaks of sporotrichosis, an emerging disease with growing health implications worldwide. [ABSTRACT FROM AUTHOR]

Fungi in the Cryphonectriaceae are important canker pathogens of woody shrubs and trees in the Melastomataceae and Myrtaceae (Myrtales). During 2021 disease surveys in KwaZulu‐Natal (South Africa) plantations, a serious stem canker disease was discovered on species of Eucalyptus and Corymbia. The cankers had structures on their surfaces typical of fungi in the Cryphonectriaceae. The aims of the study were to identify the fungus associated with the disease and to test its pathogenicity. Morphological characteristics of both sexual and asexual structures and phylogenetic analyses based on partial sequences of the conserved nuclear large subunit (LSU) ribosomal DNA, the internal transcribed spacer (ITS) regions including the 5.8S gene of the ribosomal DNA operon, and two β‐tubulin (BT1/BT2) regions were used for identification purposes. Phylogenetic analyses of the sequence data and morphological characteristics supported the establishment of a new genus in the Cryphonectriaceae, for which the name Xanthoporthe myrticola gen. et sp. nov. is provided. Pathogenicity trials showed that isolates were pathogenic on tested Eucalyptus grandis and hybrids as well as Corymbia henryi. The results suggest that this is an emerging pathogen that could influence the sustainability of plantation forestry in South Africa. [ABSTRACT FROM AUTHOR]

Eucalyptus scab and shoot malformation is an emerging disease and a serious threat to the global plantation forestry industry. The disease appeared in North Sumatra (Indonesia) in the early 2010s and the causal agent was recently described as a novel species, Elsinoe necatrix. Nothing is known regarding its possible origin or why it emerged rapidly to cause a serious local epidemic. To investigate its population biology, we developed 15 polymorphic microsatellite markers as well as mating‐type markers using genome sequences for two E. necatrix isolates. Isolates of the pathogen were collected from different host varieties at four locations in the Lake Toba region of North Sumatra and characterized using these markers. A high level of genotypic diversity was observed for all populations with little to no genetic differentiation between sampling areas. Discriminant analysis of principal components, genotype networks and analysis of molecular variance all showed a lack of population structure and a high level of gene flow among sampling regions. Mating‐type ratios and linkage disequilibrium analyses suggest that sexual recombination is likely to be occurring, although a sexual state has not been found for the pathogen. The results of this study highlight the fact that new genotypes of E. necatrix, probably arising from cryptic sexual recombination, will challenge efforts to manage the disease, and that breeding and selection for tolerance will require substantial host genetic diversity. [ABSTRACT FROM AUTHOR]

Aim: Spreading infectious diseases associated with introduced pathogens can have devastating effects on native biota and human livelihoods. We analyse the global distribution of 100 major alien fungal and oomycete pathogens with substantial socio‐economic and environmental impacts and examine their taxonomy, ecological characteristics, temporal accumulation trajectories, regional hot‐ and coldspots of taxon richness and taxon flows between continents. Location: Global. Taxon: Alien/cryptogenic fungi and fungus‐like oomycetes, pathogenic to plants or animals. Methods: To identify over/underrepresented classes and phyla, we performed Chi2 tests of independence. To describe spatial patterns, we calculated the region‐wise richness and identified hot‐ and coldspots, defined as residuals after correcting taxon richness for region area and sampling effort via a quasi‐Poisson regression. We examined the relationship with environmental and socio‐economic drivers with a multiple linear regression and evaluated a potential island effect. Regional first records were pooled over 20‐year periods, and for global flows the links between the native range to the alien regions were mapped. Results: Peronosporomycetes (Oomycota) were overrepresented among taxa and regional taxon richness was positively correlated with area and sampling effort. While no island effect was found, likely due to host limitations, hotspots were correlated with human modification of terrestrial land, per capita gross domestic product, temperate and tropical forest biomes, and orobiomes. Regional first records have increased steeply in recent decades. While Europe and Northern America were major recipients, about half of the taxa originate from Asia. Main Conclusions: We highlight the putative importance of anthropogenic drivers, such as land use providing a conducive environment, contact opportunities and susceptible hosts, as well as economic wealth likely increasing colonisation pressure. While most taxa were associated with socio‐economic impacts, possibly partly due to a bias in research focus, about a third show substantial impacts to both socio‐economy and the environment, underscoring the importance of maintaining a wholescale perspective across natural and managed systems. [ABSTRACT FROM AUTHOR]

Acacia crassicarpa is a tropical tree species native to Australia, West Papua and Papua New Guinea, which has been widely used to establish plantations in the lowland humid tropics of Sumatra and Kalimantan. These trees, able to grow on sites having relatively poor nutrition, have been relatively free of serious disease problems. A rust disease infecting the phyllodes of A. crassicarpa has recently been encountered in plantations in various areas of Indonesia and Malaysia where they are not native. In this study, the rust was collected and identified as Endoraecium violae‐faustiae using DNA sequence analysis based on the internal transcribed spacer (ITS) region of the rDNA. This is the first record of the rust outside its native range. Damage at present appears to be relatively mild but the pathogen could become important in the future. [ABSTRACT FROM AUTHOR]

The Eucalyptus plantation industry in Indonesia has expanded rapidly during the last few decades. During routine nursery disease surveys, symptoms of a leaf and shoot blight disease were detected on Eucalyptus mother plants. Isolates were obtained from symptomatic tissues and identified using DNA sequence analyses. Phylogenetic analyses showed that the isolates were those of Quambalaria eucalypti. Pathogenicity tests were conducted with isolates of Q. eucalypti on clones of E. pellita and E. grandis × E. pellita hybrids. These resulted in symptoms similar to those observed on naturally infected plants. Eucalyptus genotypes tested showed variation in their susceptibility, highlighting the potential to select and breed for resistance and thus to manage future outbreaks of the disease. This is the first report of the pathogen in Indonesia as well as in Southeast Asia. [ABSTRACT FROM AUTHOR]

Pitch canker on plantation‐grown Pinus species, caused by the fungal pathogen Fusarium circinatum, first appeared in the western and southern Cape regions of South Africa. However, outbreaks have subsequently been reported from the major plantation growing regions of KwaZulu‐Natal and Limpopo in the eastern, summer rainfall regions of the country. It is more than 10 years since the last detailed population genetics studies on F. circinatum in the region were conducted. To shed light on the population biology of F. circinatum in this region of South Africa, we used microsatellite markers and mating‐type assays to study a collection of 296 isolates from different nurseries and plantation sites. Our results showed that populations in the region are highly diverse, but strongly interconnected, with various genotypes shared across nursery and plantation collection sites. In contrast to nursery populations, those associated with pitch canker outbreaks were characterized by the presence of relatively small numbers of dominant genotypes that were generally widespread across the region. Opposite mating‐type individuals occurred in most of the isolate collections, but multilocus linkage disequilibrium analyses pointed towards clonality being the main reproductive mode of F. circinatum in the region. Most of the pathogen's genetic variation could probably have resulted from multiple different introductions into the country and more specifically, into the summer rainfall region. Because the spread and establishment of invasive pathogens are typically driven by aggressive clones, the results of this study provide important considerations for current and future Pinus disease management strategies. [ABSTRACT FROM AUTHOR]

Cypress canker is a branch and stem canker disease of Cupressaceae trees, particularly those in the genera Cupressus and Hesperocyparis. These trees have been planted in many parts of the world as ornamentals and the Seiridium species that cause the disease, consequently, also have an almost global distribution. The taxonomy of Seiridium species causing cypress canker has recently been revised and numerous species are now believed to cause the disease. This study describes, for the first time, cypress canker on the native South African Cupressaceae tree, Widdringtonia nodiflora. The aim was to identify the causal agent and confirm its pathogenicity. Phylogenetic analyses of sequence data for four regions identified the fungus as Seiridium neocupressi, a species previously known only from Australia, New Zealand and Italy. Field inoculations of W. nodiflora branches resulted in distinct cankers within 6 weeks and the fungus could be reisolated from the treated trees. Cypress canker has been known in South Africa for many decades, where it causes a serious disease on nonnative species of Cupressus, but it has never been found on native Cupressaceae. The newly discovered disease caused by a probable alien pathogen is of particular concern because only three species of Widdringtonia occur in South Africa and are important components of the native flora. The two other species, W. wallichii and W. schwartzii, occur in small endemic and threatened populations. The origin of S. neocupressi in South Africa and the relative susceptibility of the three Widdringtonia species, consequently, requires urgent attention. [ABSTRACT FROM AUTHOR]

Chrysoporthe deuterocubensis is the causal agent of a serious canker disease of Eucalyptus spp. in tropical and sub‐tropical areas of Asia. Where the disease occurs, Eucalyptus spp. are non‐native and the native hosts of the pathogen have not been conclusively determined. The chance discovery of C. deuterocubensis on native Melastoma malabathricum growing in the understory of Eucalyptus trees in Indonesia raised the possibility that this woody shrub could be a native host of C. deuterocubensis, which would then have undergone a host jump to Eucalyptus. Four populations of C. deuterocubensis were collected from cankers on Eucalyptus and Melastoma trees in Indonesia and Malaysia. These were subjected to population genetic analyses using microsatellite markers. The genetic diversity for isolates in all four populations was relatively low (H¯ = 0.166–0.316) and unlikely to represent a native source. The maximum percentage of genotypic diversity was high for all four populations (Gmax = 60.0–71.5%) irrespective of the host. Structure analyses and haplotype networks showed no structure related to the host plant species. Overall, the results failed to provide evidence that the indigenous M. malabathricum is the native host or origin of C. deuterocubensis infections on the Eucalyptus trees studied. [ABSTRACT FROM AUTHOR]

The genus Calonectria includes many aggressive plant pathogens causing diseases on various agricultural crops as well as forestry and ornamental tree species. Some species have been accidentally introduced into new environments via international trade of putatively asymptomatic plant germplasm or contaminated soil, resulting in significant economic losses. This review provides an overview of the taxonomy, population biology, and pathology of Calonectria species, specifically emerging from contemporary studies that have relied on DNA‐based technologies. The growing importance of genomics in future research is highlighted. A life cycle is proposed for Calonectria species, aimed at improving our ability to manage diseases caused by these pathogens. [ABSTRACT FROM AUTHOR]

The Botryosphaeriaceae is an important and diverse family of latent fungal pathogens of woody plants, including Eucalyptus. These fungi live within infected plant tissues for extended periods without causing symptoms, but emerge to cause severe disease when their hosts are subjected to stress. In this study, we compared the diversity of the Botryosphaeriaceae in samples from nine different Eucalyptus clones growing in North and Central Sumatra, Indonesia, having distinct climates. Samples were taken from asymptomatic trees as well as those damaged by a sucking insect (Helopeltis sp.: Miridae), a stem boring moth (Polyphagozerra coffeae: Cossidae) and a Eucalyptus scab and shoot malformation fungal disease caused by Elsinoe necatrix. In total, 215 Botryosphaeriaceae isolates were obtained from which 13 species were identified based on rDNA‐ITS, TEF‐1α, β‐tubulin and rpb2 sequence data. These species included seven Lasiodiplodia species, four Neofusicoccum species as well as Endomelanconiopsis endophytica and Cophinforma atrovirens. A new species of Lasiodiplodia arose from collections and for which the name L. riauensis is provided. Two species, L. theobromae and L. brasiliensis, were found in both climatic zones, whereas other species were specific to the areas from which they were collected. No correlation was found between the Botryosphaeriaceae species diversity and damage to trees caused by insects or E. necatrix disease. [ABSTRACT FROM AUTHOR]

In 2014, a new and serious leaf and shoot disease of unknown aetiology appeared in Eucalyptus plantations of North Sumatra, Indonesia. The disease is characterized by black necrotic spots that initially appear on young leaves and petioles, which become scab‐like as the lesions age. Infected trees respond to infection by producing shoots with small leaves that commonly appear feathered. Fruiting structures typical of most foliar pathogens are not seen, but using scanning electron microscopy (SEM), fungal spores are evident and associated with the scab‐like structures. Using culture‐dependent methods, cultures resembling a species of Elsinoe were isolated from the lesions. DNA sequence comparisons for four gene regions, as well as morphological observations, showed that the fungus is an undescribed species in Elsinoe, for which the name Elsinoe necatrix sp. nov. is provided. Pathogenicity trials on a Eucalyptus clone with the Elsinoe species resulted in scab‐like structures similar to those observed under field conditions and the fungus was easily reisolated from the resulting lesions. This study includes a description of the pathogen and characterization of the disease, for which the name Eucalyptus scab and shoot malformation is suggested. [ABSTRACT FROM AUTHOR]

The Eucalyptus foliar pathogen Teratosphaeria destructans causes severe and widespread damage in South‐East Asian and South African plantations. In 2016, leaf blight symptoms resembling those caused by T. destructans were observed in a plantation of a Eucalyptus grandis × E. urophylla hybrid in Sabah, Malaysia. The aims of this study were to confirm the identity of the causal agent as T. destructans and to investigate the genetic structure of isolates associated with this newly detected disease outbreak. Using sequence data of three gene regions, the identity of the pathogen was confirmed as T. destructans. The mating type and microsatellite genotypes of 41 isolates from this Malaysian population were identified and compared with those from previously characterized populations in South‐East Asia and South Africa. The Malaysian population had the highest genotypic diversity of any T. destructans population thus far investigated. Both the mating types were found in the collection of isolates, and these were in approximately equal proportions. Although structures linked to a sexual state of the fungus have not been found, sexual reproduction is theoretically possible and could explain the high genetic diversity in the pathogen that must have been accidentally introduced into Malaysia. This is the first record of T. destructans in Sabah and, to the best of our knowledge, in also other parts of Borneo. [ABSTRACT FROM AUTHOR]

Austropuccinia psidii, cause of myrtle rust, has spread globally where Myrtaceae occur. Multiple strains of A. psidii have been identified, including a unique strain found only in South Africa. The South African strain is a biosecurity concern for species of Myrtaceae worldwide. This is because preliminary testing of South African Myrtaceae suggests it could have a wide host range, and thus has the potential to be invasive. In this study, we assessed the ability of the South African strain to infect other species of Myrtaceae by testing the susceptibility of New Zealand provenance Myrtaceae. Seedlings of four native New Zealand Myrtaceae species (Metrosideros excelsa, Leptospermum scoparium, Kunzea robusta, and Kunzea linearis) were artificially inoculated in South Africa with a single‐uredinium isolate of the South African strain. Fourteen days after inoculation, uredinia, and in many cases telia, had developed on the young leaves and stems of all four host species, which led to shoot tip dieback in the more severe cases. When comparisons were made between the species, K. robusta was the least susceptible to the South African strain of A. psidii, while L. scoparium and M. excelsa were the most susceptible. While only a limited number of seed families were tested, only a small proportion of the seedlings showed resistance to infection by the South African strain. This preliminary testing highlights the potential invasive risk the South African strain poses to global Myrtaceae communities, including New Zealand Myrtaceae. [ABSTRACT FROM AUTHOR]

Teratosphaeria foliar pathogens cause leaf and shoot blight on Eucalyptus trees in many parts of the world. Among them, T. destructans is one of the most aggressive pathogens causing defoliation of young Eucalyptus trees in tropic regions. Identification of T. destructans to species level is currently not possible based solely on morphological characteristics or ITS sequence data. The aim of this study was to assess T. destructans microsatellites and a newly developed T. epicoccoides microsatellite as a diagnostic tool to differentiate among T. destructans and several closely related foliar pathogens. Based on the number of markers that amplified, the T. destructans microsatellites allowed for the differentiation of T. destructans, T. epicoccoides,T. eucalypti,T. nubilosa,T. pseudoeucalypti and T. viscidus. These microsatellites provide a rapid and cost‐effective diagnostic tool that will enable the identification of a large number of isolates important in disease surveys and inoculation trials. [ABSTRACT FROM AUTHOR]

Gall‐forming hymenopterans of Eucalyptus species are highly successful invaders causing significant damage in non‐native plantation forests. To date, at least 16 of these species have been recorded as invasive eucalypt gall formers, of which less than half are known from Australia where they are thought to be native. About 80% of the species have become invasive only in the last two decades, <10%, of which were known from Australia beforehand.Two species, Leptocybe invasa and Ophelimus maskelli are global invaders that have become established in 43 and 23 countries, respectively, since 2000. They belong to a large number of wasps that cause similar damage and that could become invasive in the future.The problem of identification is exacerbated by the fact that many species lack taxonomic descriptions; over 80% of the invasive eucalypt gall wasps were first described from their invasive range. The small number of taxonomists able to identify these insects slows accurate diagnoses. Even when initial identifications have been made, these may be confused with morphologically similar but distinct cryptic species, which may differ in their host range and natural enemy interactions.Furthermore, detailed information regarding their biology and native distribution is typically sparse or unknown. This lack of information delays the initiation of management actions because breeding for resistance and biological control requires accurate identification of the target pest.The gall‐forming hymenopterans associated with Eucalyptus represent an important group on which to focus the development of pre‐emptive quarantine, monitoring and potential management options. Given the global nature of invasions by these insects, an international and collaborative research approach is required, where knowledge and tools for study can be shared in a more effective manner. [ABSTRACT FROM AUTHOR]

The aggressive Eucalyptus leaf pathogen, Teratosphaeria destructans, causes widespread damage in tropical and subtropical Eucalyptus‐growing regions of Indonesia, China, Thailand, East Timor, Vietnam, Lao, and South Africa. Little is known regarding the origin, pathways of dispersal, or reproductive biology of this pathogen. The aim of this study was to investigate the genetic structure of a global collection of T. destructans isolates. This was achieved by developing and using polymorphic microsatellite markers. Low genotypic diversity and a limited number of private alleles were found in all investigated populations, with the highest maximum diversity of 10.7% in isolates from South Sumatra. This supports the hypothesis that T. destructans was introduced to these regions. High levels of clonality were common in all populations, especially in isolates sampled from the recent disease outbreak in South Africa, which were all identical. The global collection of isolates grouped into three distinct clusters, corresponding largely to their sampled regions. Low levels of genotypic diversity, high levels of clonality, and strong geographic structure suggest independent introductions into all the sampled areas from an unknown source. The results imply that strict biosecurity measures are needed to avoid introductions of additional genotypes in these areas. [ABSTRACT FROM AUTHOR]

The parasitoid wasp Ibalia leucospoides is native to the northern hemisphere and has been introduced to the southern hemisphere as a biological control agent for the invasive woodwasp Sirex noctilio. Two subspecies of the parasitoid, Ibalia leucospoides leucospoides (Palearctic distribution) and Ibalia leucospoides ensiger (Nearctic distribution), were introduced and are reported to have hybridized.Despite extensive records of the numbers and origins of the wasps imported into the southern hemisphere, nothing is known regarding their current population diversity. We investigated the genetic variation of I. leucospoides in its native and introduced ranges using mitochondrial (COI) and nuclear (ITS) markers.Mitochondrial DNA diversity in the introduced range was limited, with only five haplotypes, although sequence divergence between these haplotypes was high. Similarly, the ITS rDNA sequences revealed multiple clades present in the introduced range.These results reflect introductions from a wide geographical range but where genetic bottlenecks have possibly reduced the genetic diversity. The data further reflect the origin of the I. leucospoides populations in South America and South Africa from New Zealand or Australia. We found no evidence of hybridization between the two subspecies of the parasitoid in its introduced range, and no evidence that I. leucospoides ensiger has established outside its native range. [ABSTRACT FROM AUTHOR]

Summary: Lecanosticta acicola causes brown spot needle blight (BSNB) of Pinus species. The pathogen occurs mostly in the Northern Hemisphere but has also been reported in Central America and Colombia. BSNB can lead to stunted growth and tree mortality, and has resulted in severe damage to pine plantations in the past. There have been increasingly frequent new reports of this pathogen in Europe and in North America during the course of the past 10 years. This is despite the fact that quarantine practices and eradication protocols are in place to prevent its spread. Taxonomy: Kingdom Fungi; Phylum Ascomycota; Subphylum Pezizomycotina; Class Dothideomycetes; Subclass Dothideomycetidae; Order Capniodales; Family Mycosphaerellaceae; Genus Lecanosticta. Host range and distribution: Lecanosticta spp. occur on various Pinus species and are found in North America, Central America, South America (Colombia), Europe as well as Asia. Disease symptoms: Small yellow irregular spots appear on the infected pine needles that become brown over time. They can be surrounded by a yellow halo. These characteristic brown spots develop to form narrow brown bands that result in needle death from the tips down to the point of infection. Needles are prematurely shed, leaving bare branches with tufts of new needles at the branch tips. Infection is usually most severe in the lower parts of the trees and progresses upwards into the canopies. Useful websites: The EPPO global database providing information on L. acicola (https://gd.eppo.int/taxon/SCIRAC) Reference genome of L. acicola available on GenBank (https://www.ncbi.nlm.nih.gov/genome/?term=Lecanosticta+acicola) JGI Gold Genome database information sheet of L. acicola sequenced genome (https://gold.jgi.doe.gov/organism?xml:id=Go0047147) [ABSTRACT FROM AUTHOR]

Sirex noctilio is an economically important invasive pest of commercial pine forestry in the Southern Hemisphere. Newly established invasive populations of this woodwasp are characterized by highly male‐biased sex ratios that subsequently revert to those seen in the native range. This trend was not observed in the population of S. noctilio from the summer rainfall regions in South Africa, which remained highly male‐biased for almost a decade. The aim of this study was to determine the cause of this persistent male bias. As an explanation for this pattern, we test hypotheses related to mating success, female investment in male versus female offspring, and genetic diversity affecting diploid male production due to complementary sex determination. We found that 61% of females in a newly established S. noctilio population were mated. Microsatellite data analysis showed that populations of S. noctilio from the summer rainfall regions in South Africa are far less genetically diverse than those from the winter rainfall region, with mean Nei's unbiased gene diversity indexes of 0.056 and 0.273, respectively. These data also identified diploid males at low frequencies in both the winter (5%) and summer (2%) rainfall regions. The results suggest the presence of a complementary sex determination mechanism in S. noctilio, but imply that reduced genetic diversity is not the main driver of the male bias observed in the summer rainfall region. Among all the factors considered, selective investment in sons appears to have the most significant influence on male bias in S. noctilio populations. Why this investment remains different in frontier or early invasive populations is not clear but could be influenced by females laying unfertilized eggs to avoid diploid male production in populations with a high genetic relatedness. [ABSTRACT FROM AUTHOR]

Summary: Background : Teratosphaeria gauchensis and T. zuluensis are closely related fungi that cause Teratosphaeria (previously Coniothyrium) stem canker disease on Eucalyptus species propagated in plantations for commercial purposes. This disease is present in many countries in which Eucalyptus trees are planted, and continues to spread with the international trade of infected plant germplasm. Taxonomy: Fungi, Ascomycota, Pezizomycotina, Dothideomycetes, Dothideomycetidae, Capnodiales, Teratosphaeriaceae, Teratosphaeria. Identification: The causal agents form dark masses of pycnidia that are visible on the surface of distinct stem cankers that typically form on young green stem tissues. Accurate diagnosis of the causal agents requires DNA sequence data. Host range: Nine species of Eucalyptus are known to be affected. Of these, E. grandis and its hybrids, which include some of the most important planting stock globally, appear to be particularly vulnerable. Disease symptoms: Small necrotic lesions develop on young green stem tissue. These lesions coalesce to form large cankers that exude gum. Epicormic shoots develop below the girdling canker and, in severe cases, trees die. Useful websites: Mycobank, https://www.mycobank.org; Publications of the Forestry and Agricultural Biotechnology Institute (FABI), https://www.fabinet.up.ac.za/index.php/journals. [ABSTRACT FROM AUTHOR]

Botryosphaeria dothidea is the type species of Botryosphaeria (Botryosphaeriaceae, Botryosphaeriales). Fungi residing in this order are amongst the most widespread and important canker and dieback pathogens of trees worldwide, with B. dothidea one of the most common species on a large number of hosts. Its taxonomic circumscription has undergone substantial change in the past decade, making it difficult to interpret the large volume of literature linked to the name B. dothidea. This pathogen profile synthesizes the current understanding of B. dothidea pertaining to its distribution, host associations and role as a pathogen in managed and natural woody environments. The prolonged latent infection or endophytic phase is of particular importance, as it implies that the fungus can easily pass undetected by quarantine systems in traded living plants, fruits and other plant parts. Infections typically become obvious only under conditions of host stress, when disease symptoms develop. This study also considers the knowledge emerging from the recently sequenced B. dothidea genome, elucidating previously unknown aspects of the species, including mating and host infection strategies. Despite more than 150 years of research on B. dothidea, there is clearly much to be learned regarding this global tree pathogen. This is increasingly important given the stresses imposed on various woody hosts as a result of climate change. Taxonomy Botryosphaeria dothidea (Moug. ex Fr) Ces. & De Not, 1863. Kingdom Fungi, Phylum Ascomycota, Class Dothideomycetes, Order Botryosphaeriales, Family Botryosphaeriaceae, Genus Botryosphaeria, Species dothidea. Host range Confirmed on more than 24 host genera, including woody plants, such as Acacia (= Vachellia), Eucalyptus, Vitis and Pistachio. Disease symptoms Associated with twig, branch and stem cankers, tip and branch dieback, fruit rot, blue stain and plant death. Useful websites The Botryosphaeria site for detailed morphological descriptions (/ );, Systematic Mycology and Microbiology Laboratory Fungal Database for all literature and associated hosts (/ );, TreeBASE link for the combined ITS and TEF-1α tree (:S18906);, DOE Joint Genome Institute, JGI Mycocosm for the Botryosphaeria dothidea genome (). [ABSTRACT FROM AUTHOR]

The aim of this study was to determine the evolutionary time line for rust fungi and date key speciation events using a molecular clock. Evidence is provided that supports a contemporary view for a recent origin of rust fungi, with a common ancestor on a flowering plant., Divergence times for > 20 genera of rust fungi were studied with Bayesian evolutionary analyses. A relaxed molecular clock was applied to ribosomal and mitochondrial genes, calibrated against estimated divergence times for the hosts of rust fungi, such as Acacia (Fabaceae), angiosperms and the cupressophytes., Results showed that rust fungi shared a most recent common ancestor with a mean age between 113 and 115 million yr. This dates rust fungi to the Cretaceous period, which is much younger than previous estimations. Host jumps, whether taxonomically large or between host genera in the same family, most probably shaped the diversity of rust genera. Likewise, species diversified by host shifts (through coevolution) or via subsequent host jumps. This is in contrast to strict coevolution with their hosts., Puccinia psidii was recovered in Sphaerophragmiaceae, a family distinct from Raveneliaceae, which were regarded as confamilial in previous studies. [ABSTRACT FROM AUTHOR]

Many population studies on invasive plant pathogens are undertaken without knowing the center of origin of the pathogen. Most leaf pathogens of Eucalyptus originate in Australia and consequently with indigenous populations available, and it is possible to study the pathways of invasion. Teratosphaeria suttonii is a commonly occurring leaf pathogen of Eucalyptus species, naturally distributed in tropical and subtropical regions of eastern Australia where it is regarded as a minor pathogen infecting older leaves; however, repeated infections, especially in exotic plantations, can result in severe defoliation and tree deaths. Nine polymorphic microsatellite markers were used to assess the genetic structure of 11 populations of T. suttonii of which four where from within its native range in eastern Australia and the remaining seven from exotic Eucalyptus plantations. Indigenous populations exhibited high allele and haplotype diversity, predominantly clonal reproduction, high population differentiation, and low gene flow. The diversity of the invasive populations varied widely, but in general, the younger the plantation industry in a country or region, the lower the diversity of T. suttonii. Historical gene flow was from Australia, and while self-recruitment was dominant in all populations, there was evidence for contemporary gene flow, with South Africa being the most common source and Uruguay the most common sink population. This points distinctly to human activities underlying long-distance spread of this pathogen, and it highlights lessons to be learned regarding quarantine. [ABSTRACT FROM AUTHOR]

Abstract: Dothistroma septosporum is a haploid fungal pathogen that causes a serious needle blight disease of pines, particularly as an invasive alien species on Pinus radiata in the Southern Hemisphere. During the course of the last two decades, the pathogen has also incited unexpected epidemics on native and non‐native pine hosts in the Northern Hemisphere. Although the biology and ecology of the pathogen has been well documented, there is a distinct lack of knowledge regarding its movement or genetic diversity in many of the countries where it is found. In this study we determined the global population diversity and structure of 458 isolates of D. septosporum from 14 countries on six continents using microsatellite markers. Populations of the pathogen in the Northern Hemisphere, where pines are native, displayed high genetic diversities and included both mating types. Most of the populations from Europe showed evidence for random mating, little population differentiation and gene flow between countries. Populations in North America (USA) and Asia (Bhutan) were genetically distinct but migration between these continents and Europe was evident. In the Southern Hemisphere, the population structure and diversity of D. septosporum reflected the anthropogenic history of the introduction and establishment of plantation forestry, particularly with Pinus radiata. Three introductory lineages in the Southern Hemisphere were observed. Countries in Africa, that have had the longest history of pine introductions, displayed the greatest diversity in the pathogen population, indicating multiple introductions. More recent introductions have occurred separately in South America and Australasia where the pathogen population is currently reproducing clonally due to the presence of only one mating type. [ABSTRACT FROM AUTHOR]

Knoxdaviesia proteae, a fungus specific to the floral structures of the iconic Cape Floral Kingdom plant, Protea repens, is dispersed by mites phoretic on beetles that pollinate these flowers. Although the vectors of K. proteae have been identified, little is known regarding its patterns of distribution. Seed bearing infructescences of P. repens were sampled from current and previous flowering seasons, from which K. proteae individuals were isolated and cultured. The genotypes of K. proteae isolates were determined using 12 microsatellite markers specific to this species. Genetic diversity indices showed a high level of similarity between K. proteae isolates from the two different infructescence age classes. The heterozygosity of the population was high (0.74 ± 0.04), and exceptional genotypic diversity was encountered (Ĝ = 97.87%). Population differentiation was negligible, owing to the numerous migrants between the infructescence age classes ( N m = 47.83) and between P. repens trees ( N m = 2.96). Parsimony analysis revealed interconnected genotypes, indicative of recombination and homoplasies, and the index of linkage disequilibrium confirmed that outcrossing is prevalent in K. proteae ( [ABSTRACT FROM AUTHOR]

1. Two cossid moths, Coryphodema tristis Drury and Chilecomadia valdiviana Philippi, have recently become pests on Eucalyptus nitens H. Deane & Maiden in South Africa and Chile, respectively. Both C. tristis and C. valdiviana have large host ranges and high levels of similarity in their host distributions. Their infestations of E. nitens are the first records of these moths on Myrtaceae. 2. The contemporaneous adoption of E. nitens as a novel host, despite widespread availability of native and introduced Myrtaceae, suggests a non-random pattern of invasion. Phylogenetic relatedness among the two species linked to cryptic invasion of one or both moths at some time in the recent past provides a possible explanation for this pattern. 3. To test this hypothesis, variation in mtDNA sequences for the COI gene of C. tristis and C. valdiviana were analyzed. The COI mtDNA sequence data showed that C. tristis and C. valdiviana are highly divergent genetically, indicating that both are native on their respective continents with independent evolutionary trajectories. 4. The parallel host range expansions to E. nitens on different continents appear to be unrelated events, likely driven by characteristics of the biology and/or ecology of the host. [ABSTRACT FROM AUTHOR]

Extensive variation to damage by the invasive gall-forming wasp Leptocybe invasa Fisher & LaSalle (Hymenoptera: Eulophidae) is known to exist amongst Eucalyptus genotypes., In the present study, 30 of the 50 tested genotypes were susceptible to gall formation and development of the wasp. Gall development on the petiole and leaves of plants was compared to calculate the percentage of infestation per plant and per genotype., A positive correlation between galls on petioles and leaves indicated an absence of specificity at this level, and also that either leaves or petioles could be used to obtain an accurate estimate of the level of infestation., Genotypes of E. nitens× E. grandis and E. grandis× E. camaldulensis were most susceptible, with a maximum damage index value for leaves and petioles of 0.52 and 0.39, respectively. Eucalyptus dunii, E. nitens, E. smithii, E. urophylla and E. saligna× E. urophylla showed little or no infestation., The results obtained in the present study suggest that the selection and planting of resistant/less susceptible genotypes will be an important aid in managing damage from L. invasa invasion. [ABSTRACT FROM AUTHOR]

Human-associated introduction of pathogens and consequent invasions is very evident in areas where no related organisms existed before. In areas where related but distinct populations or closely related cryptic species already exist, the invasion process is much harder to unravel. In this study, the population structure of the Eucalyptus leaf pathogen Teratosphaeria nubilosa was studied within its native range in Australia, including both commercial plantations and native forests. A collection of 521 isolates from across its distribution was characterized using eight microsatellite loci, resulting in 112 multilocus haplotypes (MLHs). Multivariate and Bayesian analyses of the population conducted in structure revealed three genetically isolated groups (A, B and C), with no evidence for recombination or hybridization among groups, even when they co-occur in the same plantation. DNA sequence data of the ITS ( n = 32), β-tubulin ( n = 32) and 27 anonymous loci ( n = 16) were consistent with microsatellite data in suggesting that T. nubilosa should be considered as a species complex. Patterns of genetic diversity provided evidence of biological invasions by the pathogen within Australia in the states of Western Australia and New South Wales and helped unravel the pattern of invasion beyond Australia into New Zealand, Brazil and Uruguay. No significant genetic differences in pathogen populations collected in native forests and commercial plantations were observed. This emphasizes the importance of sanitation in the acquisition of nursery stock for the establishment of commercial plantations. [ABSTRACT FROM AUTHOR]

SUMMARY The robust and reliable identification of fungi underpins virtually every element of plant pathology, from disease diagnosis to studies of biology, management/control, quarantine and, even more recently, comparative genomics. Most plant diseases are caused by fungi, typically pleomorphic organisms, for which the taxonomy and, in particular, a dual nomenclature system have frustrated and confused practitioners of plant pathology. The emergence of DNA sequencing has revealed cryptic taxa and revolutionized our understanding of relationships in the fungi. The impacts on plant pathology at every level are already immense and will continue to grow rapidly as new DNA sequencing technologies continue to emerge. DNA sequence comparisons, used to resolve a dual nomenclature problem for the first time only 19 years ago, have made it possible to approach a natural classification for the fungi and to abandon the confusing dual nomenclature system. The journey to a one fungus, one name taxonomic reality has been long and arduous, but its time has come. This will inevitably have a positive impact on plant pathology, plant pathologists and future students of this hugely important discipline on which the world depends for food security and plant health in general. This contemporary review highlights the problems of a dual nomenclature, especially its impact on plant pathogenic fungi, and charts the road to a one fungus, one name system that is rapidly drawing near. [ABSTRACT FROM AUTHOR]

Sirex noctilio F. (Siricidae: Hymenoptera) is one of the most serious invasive pests of pine. In South Africa, there has been a national effort to control S. noctilio, including a campaign to increase awareness of the pest amongst the local forestry community., We considered the impacts that the arrival of the pest and the awareness campaign have had on perceptions and knowledge of S. noctilio, as well as other forestry pests, amongst members of the forestry community., For data collection, a survey questionnaire was developed and used in telephone interviews., The results obtained in the present study showed that the Sirex awareness campaign had increased knowledge of forestry pests in general but basic knowledge regarding the identification and symptoms of specific pests, such as S. noctilio, was poor. This will negatively influence monitoring efficacy., Traditional paper-based media and personal contact contributed most to enhanced awareness. Electronic media were less effective and improvement would require a more focused effort. It was of concern that private farmers and contractors, as well as non-European first language speakers, were less well informed about forestry pests., Clearly, a fragmented landscape in terms of ownership and language, presents challenges for effective communication of forestry pest threats. [ABSTRACT FROM AUTHOR]

• Premise of the study: Polymorphic microsatellite markers were developed for the pine-infecting fungus, Grosmannia alacris . • Methods and Results: Sixteen microsatellite markers were developed by using inter-simple sequence repeat (ISSR) – PCRs and 454 sequencing methods. Seven of these markers showed polymorphisms for a South African population of G. alacris , and 13 markers showed polymorphism when European isolates were included. Most of the primer pairs also amplified four closely related species: G. serpens , Leptographium gibbsii , L. castellanum , and L. yamaokae. • Conclusions: These new markers will be useful for population studies of G. alacris and other species in the G. serpens complex. [ABSTRACT FROM AUTHOR]

DNA extraction from minute hymenopterans and their larvae is difficult and challenging because of their small size indicating a low amount of starting material. Hence, 11 DNA extraction methods were compared to determine their efficacy in isolating DNA. Success of each method was scored on a 2% agarose gel after PCR of the cox 1 mitochondrial locus. A silica-membrane-based approach was the most successful, followed by a method using a combination of incubation buffers and a method using magnetic beads. The method using buffers was the most cost- and time effective. Using this method, larvae from Eucalyptus seed capsule galls could be assigned a role (parasitoid, gall former or inquiline) in the gall-inhabiting complex. [ABSTRACT FROM AUTHOR]

Novel genotypes often arise during biological invasions, but their role in invasion success has rarely been elucidated. Here we examined the population genetics and behavior of the fungus, Leptographium procerum, vectored by a highly invasive bark beetle, Dendroctonus valens, to determine whether genetic changes in the fungus contributed to the invasive success of the beetle-fungal complex in China. The fungus was introduced by the beetle from the United States to China, where we identified several novel genotypes using microsatellite markers. These novel genotypes were more pathogenic to Chinese host seedlings than were other genotypes and they also induced the release of higher amounts of 3-carene, the primary host attractant for the beetle vector, from inoculated seedlings. This evidence suggests a possible mechanism, based on the evolution of a novel genotype during the two or three decades since its introduction, for the success of the beetle-fungal complex in its introduced region. [ABSTRACT FROM AUTHOR]

Aims To highlight the increasing importance of pests and pathogens to Australian Acacia species, where they are planted as non-natives in commercial plantations and in their native environment. Location Africa, Asia, Australia, South America. Methods Existing literature and results of unpublished surveys on pests and pathogens of Australian acacias are reviewed. These are discussed within the context of a growing importance of invasive alien insects and pathogens including novel encounters and host jumps. Results Australian acacias planted as non-natives in various parts of the world are increasingly threatened by pests and pathogens. These include those that are accidentally being introduced into the new environments as well as 'new encounter' pests and pathogens that are undergoing host shifts to infect non-native acacias. Furthermore, insects and pathogens for biological control of invasive Australian acacias present substantial challenges for plantation forestry. Main conclusions Pests and pathogens will seriously challenge plantation forestry based on non-native Australian acacias. In the longer term, new encounter pests and pathogens will also threaten these trees in their native environments. [ABSTRACT FROM AUTHOR]

Summary The blue-stain fungus Ceratocystis resinifera colonizes wounds on living Picea spp. and other conifers in Europe and North America. Little is known regarding the pathogenicity of this fungus and consequently, four Norwegian C. resinifera isolates were inoculated on to Norway spruce ( Picea abies) using two different techniques. These included single-point inoculations on young trees (two inoculations per tree on 14-year-old trees) and mass-inoculations on older trees (∼200 inoculations per tree on 34-year-old trees). In both experiments, C. resinifera induced minor symptoms that in most cases did not differ significantly from inoculation with sterile agar. The virulent blue-stain fungus C. polonica, which was inoculated for comparative purposes, induced extensive symptoms, causing 83% dead cambium circumference and 82% blue-stained sapwood, and long necrotic lesions in the phloem. The results suggest that C. resinifera is non-pathogenic or only mildly pathogenic to Norway spruce and does not present a threat to these trees. [ABSTRACT FROM AUTHOR]

•Recent studies have investigated the relationships between pairs or groups of exotic species to illustrate invasive mechanisms, but most have focused on interactions at a single trophic level. •Here, we conducted pathogenicity tests, analyses of host volatiles and fungal growth tests to elucidate an intricate network of interactions between the host tree, the invasive red turpentine beetle and its fungal associates. •Seedlings inoculated with two strains of Leptographium procerum isolated from Dendroctonus valens in China had significantly longer lesions and higher mortality rates than seedlings inoculated with other fungal isolates. These two strains of L. procerum were significantly more tolerant of 3-carene than all other fungi isolated there, and the infection of Chinese pine ( Pinus tabuliformis) seedlings by these two strains enhanced the production and release of 3-carene, the main attractant for D. valens, by the seedlings. •Our results raise the possibility that interactions among the fungal associates of D. valens and their pine hosts in China may confer advantages to these strains of L. procerum and, by extension, to the beetles themselves. These interactions may therefore enhance invasion by the beetle–fungal complex. [ABSTRACT FROM AUTHOR]

Sexual reproduction in fungi involves either a single individual (selfing) or two individuals (outcrossing). To investigate the roles that these two strategies play in the establishment of an invasive alien pathogen, the Eucalyptus leaf-infecting fungus, Teratosphaeria ( Mycosphaerella) nubilosa was studied. Specifically, the genetic diversity of the pathogen was investigated at micro and macrospatial scales. Interestingly, while data obtained at microspatial scales show clearly that selfing is the main reproductive strategy, at macrospatial scales the population genetic structure was consistent with a genetically outcrossing organism. Additional analyses were performed to explore these apparently discordant results at different spatial scales and to quantify the contribution of selfing vs. outcrossing to the genotypic diversity. The results clearly show that the fungus has a mixed mating strategy. While selfing is the predominant form of mating, outcrosses must have occurred in the pathogen that increased the genotypic diversity of the fungus over time. This mating strategy, coupled with the high levels of geneflow between distant populations of the pathogen, has created an even distribution of maximum diversity from the smallest (leaf) to largest scales (>500 km), which will make breeding for resistance difficult. These data illustrate the evolutionary potential and danger of the introduction of multiple genotypes of a potentially outcrossing pathogen, especially when it has a high dispersal potential. [ABSTRACT FROM AUTHOR]

Background: Teratosphaeria nubilosa is a serious leaf pathogen of several Eucalyptus spp. This review considers the taxonomic history, epidemiology, host associations and molecular biology of T. nubilosa. Taxonomy: Kingdom Fungi; Phylum Ascomycota; Class Dothideomycetes; Order Capnodiales; Family Teratosphaeriaceae; genus Teratosphaeria; species nubilosa. Identification: Pseudothecia hypophyllous, less so amphigenous, ascomata black, globose becoming erumpent, asci aparaphysate, fasciculate, bitunicate, obovoid to ellipsoid, straight or incurved, eight-spored, ascospores hyaline, non-guttulate, thin walled, straight to slightly curved, obovoid with obtuse ends, medially one-septate, slightly constricted at the median septum, tapering to both ends, ascospore germination type F, germinating from both ends, germ tubes growing parallel to the long axis of the spore with distortion of the primary ascospore cell. Host range: Teratosphaeria nubilosa is a primary pathogen of several Eucalyptus spp., including E. botryoides, E. bicostata, E. bridgesiana, E. cypellocarpa, E. dunnii, E. globulus ssp. bicostata, E. globulus ssp. globulus, E. globulus ssp. maidenii, E. globulus ssp. pseudoglobulus, E. grandis, E. gunnii, E. nitens, E. pilularis, E. quadrangulata, E. viminalis, E. grandis ×  E. resinifera and E. urophylla ×  E. globulus. Disease symptoms: Leaf spots predominantly occur on juvenile Eucalyptus foliage; however, T. nubilosa has also recently been found on mature Eucalyptus foliage. Leaf spots are amphigenous, varying in size from small spots that are round to irregular. Lesions enlarge and coalesce to form larger blotches over the leaf surface. Initial lesions appear as pale-green spots surrounded by purple margins and, once mature, are generally yellow to pale brown with dark-brown raised borders. Useful websites: Mycobank, ; Mycosphaerella identification website, [ABSTRACT FROM AUTHOR]

Diplodia pinea and Diplodia scrobiculata are opportunistic pathogens associated with various disease symptoms on conifers that most importantly include die-back and stem cankers. Two viruses with dsRNA genomes, Sphaeropsis sapinea RNA virus 1 and 2 (SsRV1 and SsRV2) are found in D. pinea and an undescribed dsRNA element is known to occur in D. scrobiculata. We have partially characterized the putative RNA-dependent RNA polymerase (RdRp) of the undescribed dsRNA element and designed virus-specific primers from the RdRp regions of all three virus genomes. This made it possible to screen for the presence of the three viruses in a collection of D. pinea and D. scrobiculata isolates using real-time PCR. Triple infections with all three viruses occurred in D. pinea and D. scrobiculata. Co-infections with SsRV1 and SsRV2 were common but found only in D. pinea. Co-infection with SsRV1 and the undescribed dsRNA element was rare and observed only in D. pinea. Single infections with either SsRV1 or SsRV2 were equally common, while the undescribed dsRNA element never occurred alone. SsRV1 occurred alone in both D. pinea and D. scrobiculata while SsRV2 occurred alone only in D. pinea. There were only two instances where the undescribed dsRNA element was observed in D. pinea and it was otherwise found only in D. scrobiculata. This study highlights the complex interactions between the viruses found in the closely related plant pathogenic fungi, D. pinea and D. scrobiculata. It illustrates the importance of not only characterizing viruses infecting fungi but also of determining the interactions between mycoviruses and their fungal hosts. [ABSTRACT FROM AUTHOR]

1 Sirex noctilio has resulted in one of the most damaging biological invasions of pine forestry in the southern hemisphere. 2 An intensive, integrated control programme has been developed for this pest and is generally considered very successful. However, a critical comparison of S. noctilio infestations and control efforts throughout the southern hemisphere reveals that control has not been uniformly effective. Of particular concern is the apparently unexplained variability in establishment and success of biological control agents, including various parasitic wasps and the parasitic nematode Deladenus siricidicola. 3 An overlooked aspect in the establishment of the biological control interventions for S. noctilio is the potential influence of genetic bottlenecks on the ability of the agents to adapt to different environments and different populations of S. noctilio. 4 Despite established biological control agents, stress in forests caused by silvicultural practices or the environment will predispose trees to heavy infestation. Unfortunately, improved silvicultural practices are not always economically feasible and environmental changes are often unavoidable. 5 Sirex noctilio continues to pose a serious threat to pine forestry in many areas. Despite extensive earlier research into a single integrated control for S. noctilio, it is important to recognize that such a strategy will probably require significant local adaptation in new areas of infestation and over time. [ABSTRACT FROM AUTHOR]

Fusarium wilt, caused by the fungal pathogen Fusarium oxysporum f. sp. cubense ( Foc), is one of the most destructive diseases of bananas. In the tropics and subtropics, Cavendish banana varieties are highly susceptible to Foc race 4 (VCG 0120). Cavendish selection GCTCV-218 was shown to have significantly lower disease severity and incidence compared with susceptible cultivar Williams in replicated greenhouse and field trials. Suppression subtractive hybridization (SSH) was previously carried out to identify genes induced in roots of GCTCV-218, but not in Williams, after infection with Foc‘subtropical’ race 4 . Seventy-nine SSH clones were sequenced and revealed 13 non-redundant gene fragments, several of which showed homology to defence-associated genes, including cell wall-strengthening genes. Quantitative RT-PCR was used to confirm up-regulation and differential expression of a number of genes throughout a time-course, following Foc infection in the tolerant GCTCV-218 when compared with susceptible cv. Williams . Tolerance of GCTCV-218 was linked to significantly increased induction of cell wall-associated phenolic compounds. [ABSTRACT FROM AUTHOR]

Ophiostoma ips is a common fungal associate of various conifer-infesting bark beetles in their native ranges and has been introduced into non-native pine plantations in the Southern Hemisphere. In this study, we used 10 microsatellite markers to investigate the population biology of O. ips in native (Cuba, France, Morocco and USA) and non-native (Australia, Chile and South Africa) areas to characterize host specificity, reproductive behaviour, and the potential origin as well as patterns of spread of the fungus and its insect vectors. The markers resolved a total of 41 alleles and 75 haplotypes. Higher genetic diversity was found in the native populations than in the introduced populations. Based on the origin of the insect vectors, the populations of O. ips in Australia would be expected to reflect a North American origin, and those in Chile and South Africa to reflect a European origin. However, most alleles observed in the native European population were also found in the native North American population; only the allele frequencies among the populations varied. This admixture made it impossible to confirm the origin of the introduced Southern Hemisphere (SH) populations of O. ips. There was also no evidence for specificity of the fungus to particular bark beetle vectors or hosts. Although O. ips is thought to be mainly self-fertilizing, evidence for recombination was found in the four native populations surveyed. The higher genetic diversity in the North American than in the European population suggests that North America could be the possible source region of O. ips. [ABSTRACT FROM AUTHOR]

Mycosphaerella nubilosa is one of the most important Eucalyptus leaf pathogens, causing premature defoliation and stunting of growth. The aim of this study was to develop polymorphic microsatellite markers for M. nubilosa. Fifteen primer sets were developed and evaluated for polymorphism. Two primers were monomorphic, three primers did not amplify the desired region and 10 primer pairs were polymorphic. These microsatellite markers will be applied to population biology studies of M. nubilosa collections from several countries. These studies will promote an understanding of the genetics and the global movement of M. nubilosa that is severely limiting plantation development. [ABSTRACT FROM AUTHOR]

The ascomycete genera Cryphonectria and Endothia are closely related members of Diaporthales. Recent DNA sequence comparisons have shown that isolates from Elaeocarpus spp. in New Zealand, previously identified as Cryphonectria radicalis and Cryphonectria gyrosa, represent a phylogenetic group distinct from those including other species of Cryphonectria and Endothia. Cryphonectria gyrosa applies to a species that occurs on Elaeocarpus glandulifer in Sri Lanka, the same host genus but a different species from which the New Zealand collections were made. The aim of this study was to provide a name for the fungi residing in the phylogenetic group from New Zealand. Morphological characters that define these fungi include superficial conical conidiomata, conidia of variable size, and ascospores with one to three septa. These characteristics are not found in other species of Cryphonectria. We also recognise a second species in the group from New Zealand that has distinctly larger ascospores. Herbarium specimens of C. gyrosa exhibit the same primary characteristics as the specimens from New Zealand and C. gyrosa is regarded as conspecific with one of the species in the New Zealand collections. A new genus, Amphilogia, is described for the collections of C. gyrosa from Sri Lanka and New Zealand, which also contains the second species from New Zealand, Amphilogia major sp. nov. [ABSTRACT FROM AUTHOR]

Thielaviopsis basicola is a soil-borne fungal pathogen affecting many important agricultural crops. Little is known regarding the population biology or origin of this pathogen. Polymorphic markers developed for Ceratocystis fimbriata, a species complex phylogenetically closely related to T. basicola, were tested and found not to be useful for T. basicola. In this study 14 primer pairs, seven of which resulted in the amplification of single polymorphic fragments in T. basicola were developed. These primers will enable further studies on this economically important pathogen, and will result in an enhanced understanding of its population structure in different parts of the world. [ABSTRACT FROM AUTHOR]

Ceratocystis fimbriata is a serious wilt and canker stain pathogen with a wide geographical distribution and host range that includes both woody and herbaceous plants. Previous studies using hybridization have shown that isolates of C. fimbriata from different hosts and origins differ in colony morphology, pathogenicity and growth rate, as well as conidial state. It has therefore been suggested that distinct strains, linked to host or geographical origin, are encompassed in C. fimbriata. The aim of this study was to develop PCR-based microsatellite markers for population studies on C. fimbriata. ISSR-PCR was used to target specific microsatellite regions of DNA from C. fimbriata. These amplified products were cloned and sequenced. Primer pairs were designed from these sequences to flank the microsatellite regions. From 24 primer pairs, 11 polymorphic primers were selected and tested on a number of C. fimbriata isolates representing a wide host and geographical range. Cluster analyses of the results indicate that these markers clearly distinguish between different geographical and host specific populations of C. fimbriata. The results are concordant with sequence data from the internal transcribed spacer (ITS) region of the rDNA operon of the same isolates. These markers will be useful in future studies of C. fimbriata population structure and diversity. [ABSTRACT FROM AUTHOR]