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Aim: Delimiting recently diverged species is challenging. During speciation, genetic differentiation may be distributed unevenly across the genome, as different genomic regions can be subject to different selective pressures and evolutionary histories. Reliance on limited numbers of genetic markers that may be underpowered can make species delimitation even more challenging, potentially resulting in taxonomic inconsistencies. Rockhopper penguins of the genus Eudyptes comprise three broadly recognized taxa: northern (E. moseleyi), southern (E. chrysocome) and eastern rockhopper (E. filholi). Their taxonomic status has been controversial for decades, with researchers disagreeing about whether E. chrysocome and E. filholi are distinct species or conspecific. Our goal is to evaluate genome‐wide patterns of divergence to evaluate genetic differentiation and species delimitation in rockhopper penguins, and to assess which mechanisms may underlie previous discordance among nuclear versus mitochondrial analyses. Location: Sub‐Antarctic and temperate coastal regions of the Southern Hemisphere. Methods: We generated reduced‐representation genomic libraries using double digest restriction‐site associated DNA (ddRAD) sequencing to evaluate genetic differentiation, contemporary migration rates and admixture among colonies of rockhopper penguins. Results: The extent of genetic differentiation among the three taxa was consistently higher than population‐level genetic differentiation found within these and other penguin species. There was no evidence of admixture among the three taxa, suggesting the absence of ongoing gene flow among them. Species delimitation analyses based on molecular data, along with other lines of evidence, provide strong support for the taxonomic distinction of three species of rockhopper penguins. Main conclusions: Our results provide strong support for the existence of three distinct species of rockhopper penguins. The recognition of this taxonomic diversity is crucial for the management and conservation of this widely distributed species group. This study illustrates that widespread dispersive seabird lineages lacking obvious morphological differences may nevertheless have complex evolutionary histories and comprise cryptic species diversity. [ABSTRACT FROM AUTHOR]

Great whales have been detected using very‐high‐resolution satellite imagery, suggesting this technology could be used to monitor whales in remote areas. However, the application of this method to whale studies is at an early developmental stage and several technical factors need to be addressed, including capacity for species differentiation and the maximum depth of detection in the water column. Both require knowledge of the spectral reflectance of the various whale species just above the sea surface, as when whales bodies break the surface of the water to breath, log or breach, there is, at times, no sea water between the whale's skin and the satellite sensor. Here we tested whether such reflectance could be measured on dead whale tissue. We measured the spectral reflectance of fresh integument collected during the bowhead subsistence harvest, and of thawed integument samples from various species obtained following strandings and stored at −20°C. We show that fresh and thawed samples of whale integument have different spectral properties. The reflectance of fresh samples was higher than the reflectance of thawed samples, as integument appears to darken after death and with time, even under frozen conditions. In this study, we present the first whale reflectance estimates (without the influence of sea water and for dead tissue). These provide a baseline for additional work, needed to advance the use of satellite imagery to monitor whales and facilitate their conservation. [ABSTRACT FROM AUTHOR]

Aim: The conservation of biodiversity is hampered by data deficiencies, with many new species and subspecies awaiting description or reclassification. Population genomics and ecological niche modelling offer complementary new tools for uncovering functional units of phylogenetic diversity. We hypothesize that phylogenetically delineated lineages of gentoo penguins (Pygoscelis papua) distributed across Antarctica and sub‐Antarctic Islands are subject to spatially explicit ecological conditions that have limited gene flow, facilitating genetic differentiation, and thereby speciation processes. Location: Antarctica and sub‐Antarctic area. Methods: We identify divergent lineages for gentoo penguins using ddRAD‐seq and mtDNA, and generated species distribution models (SDMs) based on terrestrial and marine parameters. Results: Analyses of our genomic data supports the existence of four major lineages of gentoo penguin: (i) spanning the sub‐Antarctic archipelagos north of the Antarctic Polar Front (APF); (ii) Kerguelen Island; (iii) South America; and (iv) across maritime Antarctic and the Scotia Arc archipelagos. The APF, a major current system around Antarctica, acts as the most important barrier separating regional sister lineages. Our ecological analyses spanning both the terrestrial (breeding sites) and marine (feeding sites) realms recover limited niche overlap among the major lineages of gentoo penguin. We observe this pattern to correspond more closely with regional differentiation of marine conditions than to terrestrial macroenvironmental features. Main conclusions: Recognition of regional genetic lineages as discrete evolutionary entities that occupy distinct ecological niches and also differ morphologically should be considered a priority for conservation. Gentoo penguins provide a good example of how conservation policy can be directly impacted by new insights obtained through the integration of larger genomic datasets with novel approaches to ecological modelling. This is particularly pertinent to polar environments that are among the most rapidly changing environments on earth. [ABSTRACT FROM AUTHOR]

Aim: Marine protected areas can serve to regulate harvesting and conserve biodiversity. Within large multi‐use MPAs, it is often unclear to what degree critical sites of biodiversity are afforded protection against commercial activities. Addressing this issue is a prerequisite if we are to appropriately assess sites against conservation targets. We evaluated whether the management regime of a large MPA conserved sites (Key Biodiversity Areas, KBAs) supporting the global persistence of top marine predators. Location: Southwest Atlantic Ocean. Method: We collated population and tracking data (1,418 tracks) from 14 marine predator species (Procellariiformes, Sphenisciformes, Pinnipedia) that breed at South Georgia and the South Sandwich Islands, and identified hotspots for their conservation under the recently developed KBA framework. We then evaluated the spatiotemporal overlap of these sites and the different management regimes of krill, demersal longline and pelagic trawl fisheries operating within a large MPA, which was created with the intention to protect marine predator species. Results: We identified 12 new global marine KBAs that are important for this community of top predators, both within and beyond the focal MPA. Only three species consistently used marine areas at a time when a potentially higher‐risk fishery was allowed to operate in that area, while other interactions between fisheries and our target species were mostly precluded by MPA management plans. Main conclusions: We show that current fishery management measures within the MPA contribute to protecting top predators considered in this study and that resource harvesting within the MPA does not pose a major threat—under current climate conditions. Unregulated fisheries beyond the MPA, however, pose a likely threat to identified KBAs. Our approach demonstrates the utility of the KBA guidelines and multispecies tracking data to assess the contributing role of well‐designed MPAs in achieving local and internationally agreed conservation targets. [ABSTRACT FROM AUTHOR]

Cumulative human impacts across the world's oceans are considerable. We therefore examined a single model taxonomic group, the penguins (Spheniscidae), to explore how marine species and communities might be at risk of decline or extinction in the southern hemisphere. We sought to determine the most important threats to penguins and to suggest means to mitigate these threats. Our review has relevance to other taxonomic groups in the southern hemisphere and in northern latitudes, where human impacts are greater. Our review was based on an expert assessment and literature review of all 18 penguin species; 49 scientists contributed to the process. For each penguin species, we considered their range and distribution, population trends, and main anthropogenic threats over the past approximately 250 years. These threats were harvesting adults for oil, skin, and feathers and as bait for crab and rock lobster fisheries; harvesting of eggs; terrestrial habitat degradation; marine pollution; fisheries bycatch and resource competition; environmental variability and climate change; and toxic algal poisoning and disease. Habitat loss, pollution, and fishing, all factors humans can readily mitigate, remain the primary threats for penguin species. Their future resilience to further climate change impacts will almost certainly depend on addressing current threats to existing habitat degradation on land and at sea. We suggest protection of breeding habitat, linked to the designation of appropriately scaled marine reserves, including in the High Seas, will be critical for the future conservation of penguins. However, large-scale conservation zones are not always practical or politically feasible and other ecosystem-based management methods that include spatial zoning, bycatch mitigation, and robust harvest control must be developed to maintain marine biodiversity and ensure that ecosystem functioning is maintained across a variety of scales. Contaminación, Pérdida de Hábitat, Pesca y Cambio Climático como Amenazas Críticas para los Pingüinos [ABSTRACT FROM AUTHOR]

Understanding the demographic response of free-living animal populations to different drivers is the first step towards reliable prediction of population trends., Penguins have exhibited dramatic declines in population size, and many studies have linked this to bottom-up processes altering the abundance of prey species. The effects of individual traits have been considered to a lesser extent, and top-down regulation through predation has been largely overlooked due to the difficulties in empirically measuring this at sea where it usually occurs., For 10 years (2003-2012), macaroni penguins ( Eudyptes chrysolophus) were marked with subcutaneous electronic transponder tags and re-encountered using an automated gateway system fitted at the entrance to the colony. We used multistate mark-recapture modelling to identify the different drivers influencing survival rates and a sensitivity analysis to assess their relative importance across different life stages., Survival rates were low and variable during the fledging year (mean = 0·33), increasing to much higher levels from age 1 onwards (mean = 0·89). We show that survival of macaroni penguins is driven by a combination of individual quality, top-down predation pressure and bottom-up environmental forces. The relative importance of these covariates was age specific. During the fledging year, survival rates were most sensitive to top-down predation pressure, followed by individual fledging mass, and finally bottom-up environmental effects. In contrast, birds older than 1 year showed a similar response to bottom-up environmental effects and top-down predation pressure., We infer from our results that macaroni penguins will most likely be negatively impacted by an increase in the local population size of giant petrels. Furthermore, this population is, at least in the short term, likely to be positively influenced by local warming. More broadly, our results highlight the importance of considering multiple causal effects across different life stages when examining the survival rates of seabirds. [ABSTRACT FROM AUTHOR]

Long-distance migration enables many organisms to take advantage of lucrative breeding and feeding opportunities during summer at high latitudes and then to move to lower, more temperate latitudes for the remainder of the year. The latitudinal range of the Adélie Penguin (Pygoscelis adeliae) spans ∼22°. Penguins from northern colonies may not migrate, but due to the high latitude of Ross Island colonies, these penguins almost certainly undertake the longest migrations for the species. Previous work has suggested that Adélies require both pack ice and some ambient light at all times of year. Over a three-year period, which included winters of both extensive and reduced sea ice, we investigated characteristics of migratory routes and wintering locations of Adélie Penguins from two colonies of very different size on Ross Island, Ross Sea, the southernmost colonies for any penguin. We acquired data from 3-16 geolocation sensor tags (GLS) affixed to penguins each year at both Cape Royds and Cape Crozier in 2003-2005. Migrations averaged 12760 km, with the longest being 17600 km, and were in part facilitated by pack ice movement. Trip distances varied annually, but not by colony. Penguins rarely traveled north of the main sea-ice pack, and used areas with high sea-ice concentration, ranging from 75% to 85%, about 500 km inward from the ice edge. They also used locations where there was some twilight (2-7 h with sun <6° below the horizon). We report the present Adélie Penguin migration pattern and conjecture on how it probably has changed over the past ∼12000 years, as the West Antarctic Ice Sheet withdrew southward across the Ross Sea, a situation that no other Adélie Penguin population has had to confront. As sea ice extent in the Ross Sea sector decreases in the near future, as predicted by climate models, we can expect further changes in the migration patterns of the Ross Sea penguins. [ABSTRACT FROM AUTHOR]

Understanding the relationship between reproductive performance and food availability requires knowledge about many different variables, including such factors as the length of incubation shifts, provisioning rates and patterns, as well as how variability in these factors affects reproductive output. To examine some of the most important aspects of parental investment, we studied the provisioning behaviour and patterns of adult Southern Rockhopper Penguins Eudyptes chrysocome chrysocome breeding at Staten Island, Argentina. We investigated foraging trip duration, provisioning rates and chick survival using adult foraging patterns. Our results show that Rockhopper Penguins had clear sex-specific differences in their provisioning behaviour. Females provision chicks throughout chick rearing. By contrast, males provision chicks only during the crèche stage and at a slightly lower rate than females during this period. Foraging trips increased in length as the breeding season progressed. Rockhopper Penguins from Staten Island performed longer trips throughout the breeding season than do other species of Eudyptes at several other locations. Our results also show differences in parental investment between years that were related to differences in chick survival. We suggest that this was most likely to be related to female rather than male foraging behaviour as only females showed inter-annual differences in their provisioning rates. [ABSTRACT FROM AUTHOR]

Eastern Rockhopper penguins from Marion Island in the sub-Antarctic region. The cover image relates to the Research Article https://doi.org/10.1111/ddi.13399 "Taxonomy based on limited genomic markers may underestimate species diversity of rockhopper penguins and threaten their conservation" by Frugone et al. [Extracted from the article]

Despite the enormous amount of data available on the importance of the gastrointestinal (GI) microbiota in vertebrate (especially mammals), information on the GI microbiota of seabirds remains incomplete. As with many seabirds, penguins have a unique digestive physiology that enables them to store large reserves of adipose tissue, protein, and lipids. This study used quantitative real-time polymerase chain reaction (qPCR) and 16S rRNA gene pyrosequencing to characterize the interspecific variations of the GI microbiota of four penguin species: the king, gentoo, macaroni, and little penguin. The qPCR results indicated that there were significant differences in the abundance of the major phyla Firmicutes, Bacteroides, Actinobacteria, and Proteobacteria. A total of 132,340, 18,336, 6324, and 4826 near full-length 16S rRNA gene sequences were amplified from fecal samples collected from king, gentoo, macaroni, and little penguins, respectively. A total of 13 phyla were identified with Firmicutes, Bacteroidetes, Proteobacteria, and Fusobacteria dominating the composition; however, there were major differences in the relative abundance of the phyla. In addition, this study documented the presence of known human pathogens, such as Campylobacter, Helicobacter, Prevotella, Veillonella, Erysipelotrichaceae, Neisseria, and Mycoplasma. However, their role in disease in penguins remains unknown. To our knowledge, this is the first study to provide an in-depth investigation of the GI microbiota of penguins., (© 2013 The Authors. Published by Blackwell Publishing Ltd. This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.)