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The choice of a prior distribution is a key aspect of the Bayesian method. However, in many cases, such as the family of power links, this is not trivial. In this article, we introduce a penalized complexity prior (PC prior) of the skewness parameter for this family, which is useful for dealing with imbalanced data. We derive a general expression for this density and show its usefulness for some particular cases such as the power logit and the power probit links. A simulation study and a real data application are used to assess the efficiency of the introduced densities in comparison with the Gaussian and uniform priors. Results show improvement in point and credible interval estimation for the considered models when using the PC prior in comparison to other well‐known standard priors. [ABSTRACT FROM AUTHOR]

In this paper, we develop statistical methodology for the analysis of data under nonnormal distributions, in the context of mixed effects models. Although the multivariate normal distribution is useful in many cases, it is not appropriate, for instance, when the data come from skewed and/or heavy‐tailed distributions. To analyse data with these characteristics, in this paper, we extend the standard linear mixed effects model, considering the family of generalized hyperbolic distributions. We propose methods for statistical inference based on the likelihood function, and due to its complexity, the EM algorithm is used to find the maximum likelihood estimates with the standard errors and the exact likelihood value as a by‐product. We use simulations to investigate the asymptotic properties of the expectation‐maximization algorithm (EM) estimates and prediction accuracy. A real example is analysed, illustrating the usefulness of the proposed methods. [ABSTRACT FROM AUTHOR]

Clinical studies on periodontal disease (PD) often lead to data collected which are clustered in nature (viz. clinical attachment level, or CAL, measured at tooth-sites and clustered within subjects) that are routinely analyzed under a linear mixed model framework, with underlying normality assumptions of the random effects and random errors. However, a careful look reveals that these data might exhibit skewness and tail behavior, and hence the usual normality assumptions might be questionable. Besides, PD progression is often hypothesized to be spatially associated, that is, a diseased tooth-site may influence the disease status of a set of neighboring sites. Also, the presence/absence of a tooth is informative, as the number and location of missing teeth informs about the periodontal health in that region. In this paper, we develop a (shared) random effects model for site-level CAL and binary presence/absence status of a tooth under a Bayesian paradigm. The random effects are modeled using a spatial skew-normal/independent (S-SNI) distribution, whose dependence structure is conditionally autoregressive (CAR). Our S-SNI density presents an attractive parametric tool to model spatially referenced asymmetric thick-tailed structures. Both simulation studies and application to a clinical dataset recording PD status reveal the advantages of our proposition in providing a significantly improved fit, over models that do not consider these features in a unified way. [ABSTRACT FROM AUTHOR]

This paper proposes an alternative method to deal with spatiotemporal data with censored and missing responses using the SAEM algorithm. This algorithm is a stochastic approximation of the widely used EM algorithm and is an important tool for models in which the E‐step does not have an analytic form. Besides the algorithm developed to estimate the model parameters from a likelihood‐based perspective, we present analytical expressions to compute the observed information matrix. Global influence measures are also developed and presented. Several simulation studies are conducted to examine the asymptotic properties of the SAEM estimates. The proposed method is illustrated by environmental data analysis. The computing codes are implemented in the new R package StempCens. [ABSTRACT FROM AUTHOR]

The purely spatial and space-time scan statistics have been successfully used by many scientists to detect and evaluate geographical disease clusters. Although the scan statistic has high power in correctly identifying a cluster, no study has considered the estimates of the cluster relative risk in the detected cluster. In this paper, we evaluate whether there is any bias on these estimated relative risks. Intuitively, one may expect that the estimated relative risks has upward bias, because the scan statistic cherry picks high rate areas to include in the cluster. We show that this intuition is correct for clusters with low statistical power, but with medium to high power, the bias becomes negligible. The same behavior is not observed for the prospective space-time scan statistic, where there is an increasing conservative downward bias of the relative risk as the power to detect the cluster increases. Copyright © 2014 John Wiley & Sons, Ltd. [ABSTRACT FROM AUTHOR]

Unhealthy alcohol use is one of the leading causes of morbidity and mortality in the United States. Brief interventions with high-risk drinkers during an emergency department (ED) visit are of great interest due to their possible efficacy and low cost. In a collaborative study with patients recruited at 14 academic ED across the United States, we examined the self-reported number of drinks per week by each patient following the exposure to a brief intervention. Count data with overdispersion have been mostly analyzed with generalized linear mixed models (GLMMs), of which only a limited number of link functions are available. Different choices of link function provide different fit and predictive power for a particular dataset. We propose a class of link functions from an alternative way to incorporate random effects in a GLMM, which encompasses many existing link functions as special cases. The methodology is naturally implemented in a Bayesian framework, with competing links selected with Bayesian model selection criteria such as the conditional predictive ordinate (CPO). In application to the ED intervention study, all models suggest that the intervention was effective in reducing the number of drinks, but some new models are found to significantly outperform the traditional model as measured by CPO. The validity of CPO in link selection is confirmed in a simulation study that shared the same characteristics as the count data from high-risk drinkers. The dataset and the source code for the best fitting model are available in Supporting Information. [ABSTRACT FROM AUTHOR]