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We review the current state of mathematical modeling of cartilage pattern formation in vertebrate limbs. We place emphasis on several reaction–diffusion type models that have been proposed in the last few years. These models are grounded in more detailed knowledge of the relevant regulatory processes than previous ones but generally refer to different molecular aspects of these processes. Considering these models in light of comparative phylogenomics permits framing of hypotheses on the evolutionary order of appearance of the respective mechanisms and their roles in the fin‐to‐limb transition. This article is categorized under:Analytical and Computational Methods > Computational MethodsModels of Systems Properties and Processes > Mechanistic ModelsDevelopmental Biology > Developmental Processes in Health and DiseaseAnalytical and Computational Methods > Analytical Methods [ABSTRACT FROM AUTHOR]

John Bonner presented a provocative conjecture that the means by which organisms evolve has itself evolved. The elements of his postulated nonuniformitarianism in the essay under discussion—the emergence of sex, the enhanced selection pressures on larger multicellular forms—center on a presumed close mapping of genotypic to phenotypic change. A different view emerges from delving into earlier work of Bonner's in which he proposed the concept of "neutral phenotypes" and "neutral morphologies" allied to D'Arcy Thompson's analysis of physical determinants of form and studied the conditional elicitation of intrinsic organizational properties of cell aggregates in social amoebae. By comparing the shared and disparate mechanistic bases of morphogenesis and developmental outcomes in the embryos of metazoans (animals), closely related nonmetazoan holozoans, more distantly related dictyostelids, and very distantly related volvocine algae, I conclude, in agreement with Bonner's earlier proposals, that understanding the evolution of multicellular evolution requires knowledge of the inherent forms of diversifying lineages, and that the relevant causative factors extend beyond genes and adaptation to the physics of materials. Research Highlights: John Bonner founded evo–devo by drawing lessons from social amoebae for other multicellular systems. His concept of "neutral morphologies" challenged the standard emphasis on gradualist adaptation. This article provides a "physico‐genetics" update of the concept. [ABSTRACT FROM AUTHOR]

Throughout his life, John Tyler Bonner contributed to major transformations in the fields of developmental and evolutionary biology. He pondered the evolution of complexity and the significance of randomness in evolution, and was instrumental in the formation of evolutionary developmental biology. His contributions were vast, ranging from highly technical scientific articles to numerous books written for a broad audience. This historical vignette gathers reflections by several prominent researchers on the greatness of John Bonner and the implications of his work [ABSTRACT FROM AUTHOR]

Genetic heterogeneity and homogeneity are associated with distinct sets of adaptive advantages and bottlenecks, both in developmental biology and population genetics. Whereas populations of individuals are usually genetically heterogeneous, most multicellular metazoans are genetically homogeneous. Observing that resource scarcity fuels genetic heterogeneity in populations, we propose that monoclonal development is compatible with the resource‐rich and stable internal environments that complex multicellular bodies offer. In turn, polyclonal development persists in tumors and in certain metazoans, both exhibiting a closer dependence on external resources. This eco‐evo‐devo approach also suggests that multicellularity may originally have emerged through polyclonal development in early metazoans, because of their reduced shielding from environmental fluctuations. [ABSTRACT FROM AUTHOR]

This article reports the results of a preliminary mission study to assess the potential of space‐borne laser heterodyne radiometry (LHR) for the remote sensing of temperature for assimilation in a numerical weather prediction (NWP) model. The LHR instruments are low cost and small in size, lending themselves to a wide variety of satellite platforms. The impact of different configurations of an idealized LHR instrument is assessed against the Infrared Atmospheric Sounding Interferometer (IASI), via single‐column linear information content analysis, using inputs consistent with the background errors of the Met Office 4D‐Var assimilation system. Multiplexed configurations give promising results, in particular for sounding of upper‐atmospheric temperatures. A preliminary mission study on the potential of space‐borne laser heterodyne spectro‐radiometers for temperature sounding is carried out using micro‐spectral window analysis of carbon dioxide absorption/emission. The main metric used for assessment is the retrieval information content and Degree of Freedom for Signal (DFS). In this picture, the evolution of the DFS across a micro‐spectral window is shown, characterizing the molecular transitions most contributing to the information retrieved. [ABSTRACT FROM AUTHOR]

The Tropospheric Airborne Fourier Transform Spectrometer measured near surface upwelling and downwelling radiances within the far infrared (FIR) over Greenland during two flights in March 2015. Here we exploit observations from one of these flights to provide in situ estimates of FIR surface emissivity, encompassing the range 80-535 cm−1. The flight campaign and instrumental setup are described as well as the retrieval method, including the quality control performed on the observations. The combination of measurement and atmospheric profile uncertainties means that the retrieved surface emissivity has the smallest estimated error over the range 360-535 cm−1 (18.7-27.8 μm), lying between 0.89 and 1 with an associated error that is of the order ±0.06. Between 80 and 360 cm−1, the increasing opacity of the atmosphere, coupled with the uncertainty in the atmospheric state, means that the associated errors are larger and the emissivity values cannot be said to be distinct from 1. These FIR surface emissivity values are, to the best of our knowledge, the first ever from aircraft-based measurements. We have compared them to a recently developed theoretical database designed to predict the infrared surface emissivity of frozen surfaces. When considering the FIR alone, we are able to match the retrievals within uncertainties. However, when we include contemporaneous retrievals from the mid-infrared (MIR), no single theoretical representation is able to capture the FIR and MIR behaviors simultaneously. Our results point toward the need for model improvement and further testing, ideally including in situ characterization of the underlying surface conditions. [ABSTRACT FROM AUTHOR]

Infections with tick-transmitted Borreliella ( Borrelia) burgdorferi, the cause of Lyme disease, represent an increasingly large public health problem in North America and Europe. The ability of these spirochetes to maintain themselves for extended periods of time in their tick vectors and vertebrate reservoirs is crucial for continuance of the enzootic cycle as well as for the increasing exposure of humans to them. The stringent response mediated by the alarmone (p)ppGpp has been determined to be a master regulator in B. burgdorferi. It modulates the expression of identified and unidentified open reading frames needed to deal with and overcome the many nutritional stresses and other challenges faced by the spirochete in ticks and animal reservoirs. The metabolic and morphologic changes resulting from activation of the stringent response in B. burgdorferi may also be involved in the recently described non-genetic phenotypic phenomenon of tolerance to otherwise lethal doses of antimicrobials and to other antimicrobial activities. It may thus constitute a linchpin in multiple aspects of infections with Lyme disease borrelia, providing a link between the micro-ecological challenges of its enzootic life-cycle and long-term residence in the tissues of its animal reservoirs, with the evolutionary side effect of potential persistence in incidental human hosts. [ABSTRACT FROM AUTHOR]

The most widely accepted model of evolutionary change, the Modern Evolutionary Synthesis, is based on the gradualism of Darwin and Wallace. They, in turn, developed their ideas in the context of 19th century concepts of how matter, including the tissues of animals and plants, could be reshaped and repatterned. A new physics of condensed, chemically, electrically and mechanically excitable materials formulated in the 20th century was, however, readily taken up by physiologists, who applied it to the understanding of dynamical, external condition-dependent and homeostatic properties of individual organisms. Nerve conduction, vascular and airway dynamics, and propagation of electrical excitations in heart and brain tissue all benefited from theories of biochemical oscillation, fluid dynamics, reaction-diffusion-based pattern instability and allied dissipative processes. When, in the late 20th century, the development of body and organ form was increasingly seen to involve dynamical, frequently non-linear processes similar to those that had become standard in physiology, a strong challenge to the evolutionary synthesis emerged. In particular, large-scale changes in organismal form now had a scientific basis other than gradualistic natural selection based on adaptive advantage. Moreover, heritable morphological changes were seen to be capable of occurring abruptly with little or no genetic change, with involvement of the external environment, and in preferred directions. This paper discusses three examples of morphological motifs of vertebrate bodies and organs, the somites, the skeletons of the paired limbs, and musculoskeletal novelties distinctive to birds, for which evolutionary origination and transformation can be understood on the basis of the physiological and biophysical determinants of their development. [ABSTRACT FROM AUTHOR]

ABSTRACT Ernest Everett Just (1883-1941) was an African American embryologist of international standing whose research interests lay in the area of fertilization and early development in marine invertebrates. Perhaps best known for his discovery of the dynamical and structural blocks to polyspermy that sweep over the egg upon fertilization, E. E. Just also was the first to associate cell surface changes with stages of embryonic development. He was deeply familiar with the natural history of the animals whose eggs he studied, and his knowledge of natural settings led him to emphasize the importance of using laboratory conditions that closely match those in nature. Based on more than 30 years of work, he came to believe that it was the cell surface that played the most critical role in development, heredity, and evolution. He promoted a holistic view of cells and organisms in opposition to the gene-centric view that was becoming more prevalent with the rise of genetics, but rejected the vitalism espoused by some biologists of his era, calling instead for 'a physics and chemistry in a new dimension ...superimposed upon the now known physics and chemistry' to account for biological phenomena. Just's incisive critique of genetic reductionism finds echoes in contemporary multiscale, systems approaches in biology. His speculations on the relationship between developmental and evolutionary mechanisms resonate with today's evolutionary developmental biology. After a brief biographical sketch, this paper outlines and discusses some of Just's scientific contributions, and shows how his ideas remain relevant today. J. Exp. Zool. (Mol. Dev. Evol.) 322B: 191-201, 2014. © 2014 Wiley Periodicals, Inc. [ABSTRACT FROM AUTHOR]

Compared to related taxa, birds have exceptionally enlarged and diversified skeletal muscles, features that are closely associated with skeletal diversification and are commonly explained by a diversity of avian ecological niches and locomotion types. The thermogenic muscle hypothesis (TMH) for the origin of birds proposes that such muscle hyperplasia and the associated skeletal innovations are instead the consequence of the avian clade originating from an ancestral population that underwent several successive episodes of loss of genes associated with thermogenesis, myogenesis, and skeletogenesis. Direct bird ancestors met this challenge with a combination of behavioral strategies (e.g., brooding of nestlings) and acquisition of a variety of adaptations for enhanced nonshivering thermogenesis in skeletal muscle. The latter include specific biochemical alterations promoting muscle heat generation and dramatic expansion of thigh and breast muscle mass. The TMH proposes that such muscle hyperplasia facilitated bipedality, freeing upper limbs for new functions (e.g., flight, swimming), and, by altering the mechanical environment of embryonic development, generated skeletal novelties, sometimes abruptly, that became distinctive features of the avian body plan. [ABSTRACT FROM AUTHOR]

SUMMARY Multicellularity has evolved in several eukaryotic lineages leading to plants, fungi, and animals. Theoretically, in each case, this involved (1) cell-to-cell adhesion with an alignment-of-fitness among cells, (2) cell-to-cell communication, cooperation, and specialization with an export-of-fitness to a multicellular organism, and (3) in some cases, a transition from 'simple' to 'complex' multicellularity. When mapped onto a matrix of morphologies based on developmental and physical rules for plants, these three phases help to identify a 'unicellular ⇒ colonial ⇒ filamentous (unbranched ⇒ branched) ⇒ pseudoparenchymatous ⇒ parenchymatous' morphological transformation series that is consistent with trends observed within each of the three major plant clades. In contrast, a more direct 'unicellular ⇒ colonial or siphonous ⇒ parenchymatous' series is observed in fungal and animal lineages. In these contexts, we discuss the roles played by the cooptation, expansion, and subsequent diversification of ancestral genomic toolkits and patterning modules during the evolution of multicellularity. We conclude that the extent to which multicellularity is achieved using the same toolkits and modules (and thus the extent to which multicellularity is homologous among different organisms) differs among clades and even among some closely related lineages. [ABSTRACT FROM AUTHOR]

The evolutionary origin of the egg stage of animal development presents several difficulties for conventional developmental and evolutionary narratives. If the egg's internal organization represents a template for key features of the developed organism, why can taxa within a given phylum exhibit very different egg types, pass through a common intermediate morphology (the so-called "phylotypic stage"), only to diverge again, thus exemplifying the embryonic "hourglass"? Moreover, if different egg types typically represent adaptations to different environmental conditions, why do birds and mammals, for example, have such vastly different eggs with respect to size, shape, and postfertilization dynamics, whereas all these features are more similar for ascidians and mammals? Here, I consider the possibility that different body plans had their origin in self-organizing physical processes in ancient clusters of cells, and suggest that eggs represented a set of independent evolutionary innovations subsequently inserted into the developmental trajectories of such aggregates. I first describe how "dynamical patterning modules" (DPMs) associations between components of the metazoan developmental-genetic toolkit and certain physical processes and effects may have organized primitive animal body plans independently of an egg stage. Next, I describe how adaptive specialization of cells released from such aggregates could have become "proto-eggs," which regenerated the parental cell clusters by cleavage, conserving the characteristic DPMs available to a lineage. Then, I show how known processes of cytoplasmic reorganization following fertilization are often based on spontaneous, self-organizing physical effects ("egg-patterning processes": EPPs). I suggest that rather than acting as developmental blueprints or prepatterns, the EPPs refine the phylotypic body plans determined by the DPMs by setting the boundary and initial conditions under which these multicellular patterning mechanisms operate. Finally, I describe how this new perspective provides a resolution to the embryonic hourglass puzzle. [ABSTRACT FROM AUTHOR]

The article discusses a muscle hyperplasia hypothesis for the origin of birds. Evidence shows that in the transition from dinosaurs to birds, the loss of a single gene, that encoding the mitochondrial uncoupling protein UCP1 from the reptile ancestors of birds led to a marked expansion of their skeletal muscles. It is said that pressure for maintenance of elevated temperatures of adults and hatchlings in the ancestors of birds led to the increase in thermogenic thigh and breast muscle mass.

Background: Deficits have been found previously in children with ADHD on tasks of time reproduction, time production and motor timing, implicating a deficit in temporal processing abilities, which has been interpreted as either secondary or primary to core executive dysfunctions. The aim of this study was to explore further the abilities of hyperactive children in skills of time estimation, using a range of time perception tasks in different temporal domains. Method: Time estimation was tested in a verbal estimation task of 10 seconds. Time reproduction was also acquired for two time intervals of 5 and 12 seconds. A temporal discrimination task aimed to determine the idiosyncratic threshold of minimum time interval (in milliseconds) necessary to distinguish two intervals differing by approximately 300 milliseconds. Twenty-two children diagnosed with ADHD were compared to 22 healthy children, matched for age, handedness and working memory skills. Results: Children with ADHD were significantly impaired in their time discrimination threshold: on average, time intervals had to be 50 ms longer for the hyperactive children in order to be discriminated when compared with controls. Children with ADHD also responded earlier on a 12-second reproduction task, which however only approached significance after controlling for IQ and short-term memory. No group differences were found for the 5-second time reproduction or verbal time estimation tasks. Conclusions: The findings suggest that children with ADHD perform poorly on time reproduction tasks which load heavily on impulsiveness and attentional processes and they also suggest that these children may have a perceptual deficit of time discrimination, which may only be detectable in brief durations which differ by several hundred milliseconds. A temporal perception deficit in the range of milliseconds in ADHD may impact upon other functions such as perceptual language skills and motor timing. [ABSTRACT FROM AUTHOR]