1. A novel multiplex RT- qPCR method based on dual-labelled probes suitable for typing all known genotypes of viral haemorrhagic septicaemia virus.
- Author
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Vázquez, D, López‐Vázquez, C, Skall, H F, Mikkelsen, S S, Olesen, N J, and Dopazo, C P
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HEMORRHAGIC septicemia , *FISH diseases , *RHABDOVIRUSES , *FLUOROPHORES , *EPIDEMIOLOGICAL research , *FISHES - Abstract
Viral haemorrhagic septicaemia ( VHS) is a notifiable fish disease, whose causative agent is a rhabdovirus isolated from a wide range of fish species, not only in fresh but also in marine and brackish waters. Phylogenetic studies have identified four major genotypes, with a strong geographical relationship. In this study, we have designed and validated a new procedure - named binary multiplex RT- qPCR (bm RT- qPCR) - for simultaneous detection and typing of all four genotypes of VHSV by real-time RT- PCR based on dual-labelled probes and composed by two multiplex systems designed for European and American/Asiatic isolates, respectively, using a combination of three different fluorophores. The specificity of the procedure was assessed by including a panel of 81 VHSV isolates covering all known genotypes and subtypes of the virus, and tissue material from experimentally infected rainbow trout, resulting in a correct detection and typing of all strains. The analytical sensitivity was evaluated in a comparative assay with titration in cell culture, observing that both methods provided similar limits of detection. The proposed method can be a powerful tool for epidemiological analysis of VHSV by genotyping unknown samples within a few hours. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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