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Emerging infectious diseases are a major cause of amphibian declines worldwide. Two of these diseases are amphibian chytridiomycosis caused by the chytrid fungus Batrachochytrium dendrobatidis (Bd) and a viral disease caused by different ranaviruses (Rv). Whereas Bd is known to be widespread in Brazil, Rv was only recently detected in natural habitats. We therefore investigated the co‐occurrence of Bd and Rv in wild tadpoles in the southern Brazilian Atlantic Forest from 21 ponds. Because infection by Bd might cause immune suppression in the host, we hypothesized that tadpoles infected with Bd would be more prone to infection with Rv than Bd‐free individuals, hence presenting higher Rv loads. Surprisingly, co‐infection was rare (less than 6% of the sampled specimens), and we did not find evidence that Bd would facilitate Rv infection. On the other hand, we detected Rv in 38% of tadpoles (125 out of 324), representing twice the prevalence of Bd in the same populations. We tested the influence of biotic and abiotic factors on infection by each pathogen on tadpoles, and we detected a positive relationship between forest cover and infection by Rv, whereas no relationship was found for Bd infection. Based on the putatively low rate of co‐infection and high prevalence of Rv in wild anuran populations, we advocate for the inclusion of Rv screening and monitoring in addition to Bd in conservation‐oriented amphibian surveys. Only surveying both diseases will provide a complete picture of amphibian disease‐related declines. [ABSTRACT FROM AUTHOR]

There is a rich literature highlighting that pathogens are generally better adapted to infect local than novel hosts, and a separate seemingly contradictory literature indicating that novel pathogens pose the greatest threat to biodiversity and public health. Here, using Batrachochytrium dendrobatidis, the fungus associated with worldwide amphibian declines, we test the hypothesis that there is enough variance in "novel" (quantified by geographic and phylogenetic distance) host‐pathogen outcomes to pose substantial risk of pathogen introductions despite local adaptation being common. Our continental‐scale common garden experiment and global‐scale meta‐analysis demonstrate that local amphibian‐fungal interactions result in higher pathogen prevalence, pathogen growth, and host mortality, but novel interactions led to variable consequences with especially virulent host‐pathogen combinations still occurring. Thus, while most pathogen introductions are benign, enough variance exists in novel host‐pathogen outcomes that moving organisms around the planet greatly increases the chance of pathogen introductions causing profound harm. [ABSTRACT FROM AUTHOR]

Identifying conservation actions to recover threatened species can be challenging due to many ecological uncertainties. For example, major threats to a species’ conservation are commonly known or suspected, but the specific impacts on population or metapopulation dynamics can be uncertain. This is frequently the case with emerging infectious diseases, including chytridiomycosis, a global driver of amphibian population declines caused by the fungal pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans. While these diseases are known to cause amphibian declines and extirpations, the mechanisms of their landscape-scale spread are still largely unknown. Such uncertainty can lead to inaction which may jeopardize timely recovery of a species. Decision analysis is a pragmatic approach to making transparent and defensible decisions while dealing with uncertainties. We investigated whether optimal actions aimed at recovering boreal toad (Anaxyrus boreas boreas) metapopulations in the southern Rocky Mountains are robust to the unknown dynamics of Bd spread using value of information and regret analyses. Value of information is a decision-analytic tool for calculating the value of new information in terms of performance on management objectives, while regret measures the cost of acting under incorrect information. We further conducted a stochastic sensitivity analysis to identify the relative effects of metapopulation parameters on system dynamics. We found optimal actions were robust to the unknown dynamics of Bd spread. While boreal toad breeding occurrence is highly sensitive to Bd distribution, the optimal decision is not. Resolving the unknown dynamics of Bd spread would lead to a minimal gain of less than one breeding toad subpopulation at the end of 50 years, given the currently available management actions. Applying a decision-analytic framework coupled with value of information and regret analyses can help frame how uncertainties affect decisions in a way that empowers decision makers. [ABSTRACT FROM AUTHOR]

Emerging infectious diseases in wildlife species caused by pathogenic fungi are of growing concern, yet crucial knowledge gaps remain for diseases with potentially large impacts. For example, there is detailed knowledge about host pathology and mechanisms underlying response for chytridiomycosis in amphibians and white‐nose syndrome in bats, but such information is lacking for other more recently described fungal infections. One such disease is ophidiomycosis, caused by the fungus Ophidiomyces ophidiicola, which has been identified in many species of snakes, yet the biological mechanisms and molecular changes occurring during infection are unknown. To gain this information, we performed a controlled experimental infection in captive Prairie rattlesnakes (Crotalus viridis) with O. ophidiicola at two different temperatures: 20 and 26°C. We then compared liver, kidney, and skin transcriptomes to assess tissue‐specific genetic responses to O. ophidiicola infection. Given previous histopathological studies and the fact that snakes are ectotherms, we expected highest fungal activity on skin and a significant impact of temperature on host response. Although we found fungal activity to be localized on skin, most of the differential gene expression occurred in internal tissues. Infected snakes at the lower temperature had the highest host mortality whereas two‐thirds of the infected snakes at the higher temperature survived. Our results suggest that ophidiomycosis is likely a systemic disease with long‐term effects on host response. Our analysis also identified candidate protein coding genes that are potentially involved in host response, providing genetic tools for studies of host response to ophidiomycosis in natural populations. [ABSTRACT FROM AUTHOR]

The onset of global climate change has led to abnormal rainfall patterns, disrupting associations between wildlife and their symbiotic microorganisms. We monitored a population of pumpkin toadlets and their skin bacteria in the Brazilian Atlantic Forest during a drought. Given the recognized ability of some amphibian skin bacteria to inhibit the widespread fungal pathogen Batrachochytrium dendrobatidis (Bd), we investigated links between skin microbiome health, susceptibility to Bd and host mortality during a die‐off event. We found that rainfall deficit was an indirect predictor of Bd loads through microbiome disruption, while its direct effect on Bd was weak. The microbiome was characterized by fewer putative Bd‐inhibitory bacteria following the drought, which points to a one‐month lagged effect of drought on the microbiome that may have increased toadlet susceptibility to Bd. Our study underscores the capacity of rainfall variability to disturb complex host–microbiome interactions and alter wildlife disease dynamics. [ABSTRACT FROM AUTHOR]

Copyright of Methods in Ecology & Evolution is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

Rising temperatures can facilitate epizootic outbreaks, but disease outbreaks may be suppressed if temperatures increase beyond the optimum of the pathogens while still within the temperature range that allows for effective immune function in hosts. The two most devastating pathogens of wild amphibians, Batrachochytrium dendrobatidis (Bd) and ranaviruses (Rv), co‐occur in large areas, yet little is known about the consequences of their co‐infection and how these consequences depend on temperature. Here we tested how exposure to Bd and subsequent exposure to Rv, followed by treatment at elevated temperatures (28 and 30°C versus 22°C) affected Bd and Rv prevalence, infection intensities, and resulting mortalities in larval agile frogs and common toads. We found multiple pieces of evidence that the presence of one pathogen influenced the prevalence and/or infection intensity of the other pathogen in both species, depending on temperature and initial Rv concentration. Generally, the 30°C treatment lowered the prevalence and infection intensity of both pathogens and, in agile frogs, this was mirrored by higher survival. These results suggest that if temperatures naturally increase or are artificially elevated beyond what is ideal for both Bd and Rv, amphibians may be able to control infections and survive even the simultaneous presence of their most dangerous pathogenic enemies. [ABSTRACT FROM AUTHOR]

Hibernation is often associated with high mortality, especially during early life stages, and losses can be exacerbated by unusual winter conditions or if animals enter hibernation carrying a disease. Here, we examined how overwintering amphibians may be affected by the combined effects of mild winters, which are projected to increase in frequency due to climate change, and of chytridiomycosis, a disease that has contributed to the decline of hundreds of species worldwide. We exposed juvenile agile frogs Rana dalmatina to Batrachochytrium dendrobatidis (Bd), the causative agent of chytridiomycosis, and subsequently subjected them to either a long, cold winter (1.5°C for 91 days) or a short, mild winter (4.5°C for 61 days) under laboratory conditions. Agile frogs proved to be highly resistant to Bd as only 37% of Bd‐exposed individuals became infected as determined before hibernation, and prevalence further decreased to 8% by the end of hibernation, with individuals showing very low infection intensity values. We observed lack of mortality in control and Bd‐exposed groups also, in both types of winter. The two types of winter we simulated did not result in differing body mass loss either alone or in combination with experimental infection. In the Bd‐exposed group, the two types of winter also did not cause differences in prevalence and infection intensity. However, among Bd‐exposed frogs, individuals that were Bd negative when entering hibernation lost more body mass than their conspecifics that carried the fungus at the onset of overwintering. Based on our results, warming winter climate conditions, with or without Bd infection, do not decrease body mass and survival rate of hibernating agile frogs, and do not increase susceptibility of individuals to chytridiomycosis. It remains to be seen to what extent the relatively weak effects of milder winters can be generalized to other amphibians of the temperate climate zone. [ABSTRACT FROM AUTHOR]

Accurate quantification of infection parameters is necessary to ensure effective surveillance, investigation and mitigation of infectious diseases. However, hosts and pathogens are often imperfectly observed and key epidemiological parameters, such as infection prevalence, can be biased if this observational uncertainty is not properly accounted for.Here, we evaluated the combined effects of imperfect pathogen detection and host pseudoreplication on the estimation of infection prevalence of the pathogen Batrachochytrium dendrobatidis (Bd) in the southern Darwin's frog (Rhinoderma darwinii). This pathogen causes amphibian chytridiomycosis, a panzootic disease responsible for the greatest documented loss of biodiversity due to an infectious disease. From November 2018 to March 2019, we made 1085 captures of 641 R. darwinii individuals in two areas of Southern Chile. Captured frogs were individually identified to eliminate host pseudoreplication, skin‐swabbed twice in sequence, and each swab was analysed in duplicate using a real‐time polymerase chain reaction (qPCR) assay to detect Bd. To provide a robust estimate of period prevalence, we used a Bayesian multiscale occupancy model that considers pathogen imperfect detection arising from both sampling and diagnostic testing processes. Finally, using a deterministic matrix population model, we illustrated how the method chosen to estimate prevalence influenced our conclusions regarding the impact of Bd infection on host population trajectories.Our results showed that Bd prevalence could be underestimated by 55% if false negatives and host pseudoreplication were not accounted for. Host pseudoreplication had a greater impact on prevalence underestimation than pathogen imperfect detection in our study. This underestimation in prevalence changed our interpretation of the impacts of Bd infections on our model species, from a nearly stable population using the naïve period prevalence to a declining one using our robust estimate.Synthesis and applications. These results highlight the importance of using robust inferences to inform disease risk assessments and to efficiently allocate limited resources during mitigation strategies of infectious diseases. The methods used here can be applied to a wide range of host–pathogen systems, and will be of interest to both researchers and practitioners aiming to investigate and mitigate the impacts of infectious diseases on free‐ranging populations. [ABSTRACT FROM AUTHOR]

Amphibians suffer from large‐scale population declines globally, and emerging infectious diseases contribute heavily to these declines. Amphibian Perkinsea (Pr) is a worldwide anuran pathogen associated with mass mortality events, yet little is known about its epidemiological patterns, especially in comparison to the body of literature on amphibian chytridiomycosis and ranavirosis.Here, we establish Pr infection patterns in natural anuran populations and identify important covariates including climate, host attributes and co‐infection with Ranavirus (Rv).We used quantitative (q)PCR to determine the presence and intensity of Pr and Rv across 1234 individuals sampled throughout central Florida in 2017–2019. We then implemented random forest ensemble learning models to predict infection with both pathogens based on physiological and environmental characteristics.Perkinsea infected 32% of all sampled anurans, and Pr prevalence was significantly elevated in Ranidae frogs, cooler months, metamorphosed individuals and frogs co‐infected with Rv, while Pr intensity was significantly higher in ranid frogs and individuals collected dead. Ranavirus prevalence was 17% overall and was significantly higher in Ranidae frogs, metamorphosed individuals, locations with higher average temperatures, and individuals co‐infected with Pr. Perkinsea prevalence was significantly higher than Rv prevalence across months, regions, life stages and species. Among locations, Pr prevalence was negatively associated with crayfish prevalence and positively associated with relative abundance of microhylids, but Rv prevalence did not associate with any tested co‐variates. Co‐infections were significantly more common than single infections for both pathogens, and we propose that Pr infections may propel Rv infections because seasonal Rv infection peaks followed Pr infection peaks and random forest models found Pr intensity was a leading factor explaining Rv infections.Our study elucidates epidemiological patterns of Pr in Florida and suggests that Pr may be under‐recognized as a cause of anuran declines, especially in the context of pathogen co‐infection. [ABSTRACT FROM AUTHOR]

Interventions of the host–pathogen dynamics provide strong tests of relationships, yet they are still rarely applied across multiple populations. After American bullfrogs (Rana catesbeiana) invaded a wildlife refuge where federally threatened Chiricahua leopard frogs (R. chiricahuensis) were reintroduced 12 years prior, managers launched a landscape‐scale eradication effort to help ensure continued recovery of the native species. We used a before‐after‐control‐impact design and environmental DNA sampling of 19 eradication sites and 18 control sites between fall 2016 and winter 2020–2021 to measure community‐level responses to bullfrog eradication, including for two pathogens. Dynamic occupancy models revealed successful eradication from 94% of treatment sites. Native amphibians did not respond to bullfrog eradication, but the pathogens amphibian chytrid fungus (Batrachochytrium dendrobatidis) and ranaviruses were coextirpated with bullfrogs. Our spatially replicated experimental approach provides strong evidence that management of invasive species can simultaneously reduce predation and disease risk for imperiled species. [ABSTRACT FROM AUTHOR]

Chytridiomycosis, caused by Batrachochytrium dendrobatidis (Bd), constitutes a major threat to many amphibian species worldwide. Predicting the species and regions of highest geographical risk is critical for the early detection and mitigation of chytrid emergence.In this study, using a niche modelling approach, the most conducive habitat for Bd within Sri Lanka (a high‐risk zone) was modelled. The distribution of 69 amphibian species was then modelled and their overlap with the high‐risk zone (areaBd) was calculated.Using areaBd and a biotic index (BI), created using ecological traits of each species, a risk index (RI) was calculated. Using this RI, a high‐risk species index (HRSI) was developed to identify the species most at risk.The results indicate that the high elevations of Sri Lanka (>600 m a.s.l.) are highly conducive for Bd. The HRSI includes 35 species, with Minervarya greenii being the species most at risk. All species in the HRSI are globally Critically Endangered (n = 14) or Endangered (n = 21).We propose active conservation measures such as the routine monitoring of HRSI species and other proactive measures to identify and prevent the spread of Bd. We believe our findings would promote the establishment of pre‐emptive mitigation measures both within Sri Lanka and elsewhere, to counter the threat of chytridiomycosis and to conserve amphibian species. [ABSTRACT FROM AUTHOR]

Ecological carryover effects, or delayed effects of the environment on an organism's phenotype, are central predictors of individual fitness and a key issue in conservation biology. Climate change imposes increasingly variable environmental conditions that may be challenging to early life‐history stages in animals with complex life histories, leading to detrimental physiological and fitness effects in later life. Yet, the latent nature of carryover effects, combined with the long temporal scales over which they can manifest, means that this phenomenon remains understudied and is often overlooked in short‐term studies limited to single life‐history stages. Herein, we review evidence for the physiological carryover effects induced by elevated ultraviolet radiation (UVR; 280–400 nm) as a potential contributor to recent amphibian population declines. UVR exposure causes a suite of molecular, cellular and physiological consequences known to underpin carryover effects in other taxa, but there is a lack of research linking embryonic and larval UVR exposures to fitness consequences post‐metamorphosis in amphibians. We propose that the key impacts of UVR on disease‐related amphibian declines are facilitated through carryover effects that bridge embryonic and larval UVR exposure with potential increased disease susceptibility post‐metamorphosis. We conclude by identifying a practical direction for the study of ecological carryover effects in amphibians that could guide future ecological research in the broader field of conservation physiology. Only by addressing carryover effects can many of the mechanistic links between environmental change and population declines be elucidated. [ABSTRACT FROM AUTHOR]

Chytridiomycosis, an emerging disease caused mostly by the pathogen Batrachochytrium dendrobatidis, has caused massive amphibian population declines and extinctions worldwide. The ecology of this disease is mainly explained by the interaction of environmental factors, pathogen biology, and host traits including development. For paedomorphic salamanders, differences in B. dendrobatidis infection may be explained by metamorphosis and water physicochemical conditions. In this study, we aimed to determine the influence of environmental and host factors on B. dendrobatidis prevalence and infection intensity in the facultative paedomorphic salamander Ambystoma altamirani. We determined B. dendrobatidis prevalence and infection load in four populations of A. altamirani along 1 year (four seasons) and assessed their relationship with environmental factors and host metamorphic status (gilled or non‐gilled). We found that B. dendrobatidis prevalence and infection load are largely explained by metamorphic status and environmental factors such as elevation, seasonality, water temperature, pH, conductivity, and dissolved oxygen. To our knowledge, this is the first study to empirically show the effect of metamorphosis on B. dendrobatidis infection status across locations and seasons. This information may be used to understand the temporal dynamics of B. dendrobatidis–host interactions and to identify potential disease outbreaks that may cause cryptic sublethal effects on salamander populations. Our results will help in the development of conservation strategies for paedomorphic salamanders that are already considered threatened by anthropogenic factors such as habitat loss and climate change. [ABSTRACT FROM AUTHOR]

Copyright of Biotropica is the property of Wiley-Blackwell and its content may not be copied or emailed to multiple sites or posted to a listserv without the copyright holder's express written permission. However, users may print, download, or email articles for individual use. This abstract may be abridged. No warranty is given about the accuracy of the copy. Users should refer to the original published version of the material for the full abstract. (Copyright applies to all Abstracts.)

The progression of infectious disease depends on the intensity of and sensitivity to pathogen infection. Understanding commonalities in trait sensitivity to pathogen infection across studies through meta‐analytic approaches could provide insight to the pathogenesis of infectious diseases. The globally devastating amphibian chytrid fungus, Batrachochytrium dendrobatidis (Bd), offers a good case system due to the widely available dataset on disruption to functional traits across species.Here, I systematically conducted a phylogenetically controlled meta‐analysis to test how infection intensity affects different functional traits (e.g. behaviour, physiology, morphology, reproduction) and the survival in amphibians infected with Bd.There was a consistent effect of Bd infection on energy metabolism, while traits related to body condition, osmoregulation, and behaviour generally decreased with Bd infection. Skin integrity, hormone levels, and osmoregulation were most sensitive to Bd infection (minimum Bd load ln 2.5 zoospore equivalent), while higher minimum Bd loads were required to influence reproduction (ln 10.6 zoospore equivalent). Mortality differed between life stages, where juvenile mortality was dependent on infection intensity and exposure duration, while adult mortality was dependent on infection intensity only. Importantly, there were strong biases for studies on immune response, body condition and survival, while locomotor capacity, energy metabolism and cardiovascular traits were lacking.The influence of pathogen load on functional disruption can help inform pathogen thresholds before the onset of irreversible damage and mortality. Meta‐analytic approaches can provide quantitative assessment across studies to reveal commonalities, differences and biases of panzootic diseases, especially for understanding the ecological relevance of disease impact. Read the free Plain Language Summary for this article on the Journal blog. [ABSTRACT FROM AUTHOR]

Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), has been related to rapid population declines and extinction in amphibians around the world. Bd has been associated with a severe decline in amphibian populations in southern Mexico. We compare the prevalence and intensity of Bd infection in two tree frogs in southern Mexico with similar life habits (Plectrohyla matudai and Ptychohyla euthysanota), inquiring if they differ across habitat types with different degrees of disturbance: preserved cloud forest, secondary cloud forest and anthropized riparian vegetation, and across three seasons. We examine the relationship between infection prevalence and intensity with biotic and abiotic variables. Infection prevalence differed between the two species, but not among environments, despite their similar life habits. Among seasons, prevalence decreased significantly at the end of the rainy season. There was no indication of significant changes in infection intensity between species, environments, and seasons. Moreover, the interaction among extrinsic factors (canopy cover, temperature, relative humidity) and factors intrinsic factors (body condition) explains the dynamics of Bd infection in the region. In our sample, we found no disease‐affected individuals, which may indicate that both species are resistant to the effects of the pathogen under field conditions. Finally, our results found no evidence to indicate that open canopies and anthropized habitats of the Sierra Madre de Chiapas are a refuge that prevents high prevalence or infection of Bd in stream breeders' amphibians. Abstract in Spanish is available with online material. [ABSTRACT FROM AUTHOR]

The sixth mass extinction is a consequence of complex interplay between multiple stressors with negative impact on biodiversity. We here examine the interaction between two globally widespread anthropogenic drivers of amphibian declines: the fungal disease chytridiomycosis and antifungal use in agriculture. Field monitoring of 26 amphibian ponds in an agricultural landscape shows widespread occurrence of triazole fungicides in the water column throughout the amphibian breeding season, together with a negative correlation between early season application of epoxiconazole and the prevalence of chytrid infections in aquatic newts. While triazole concentrations in the ponds remained below those that inhibit growth of Batrachochytrium dendrobatidis, they bioaccumulated in the newts' skin up to tenfold, resulting in cutaneous growth‐suppressing concentrations. As such, a concentration of epoxiconazole, 10 times below that needed to inhibit fungal growth, prevented chytrid infection in anuran tadpoles. The widespread presence of triazoles may thus alter chytrid dynamics in agricultural landscapes. [ABSTRACT FROM AUTHOR]

Novel infectious diseases, particularly those caused by fungal pathogens, pose considerable risks to global biodiversity. The amphibian chytrid fungus (Batrachochytrium dendrobatidis, Bd) has demonstrated the scale of the threat, having caused the greatest recorded loss of vertebrate biodiversity attributable to a pathogen. Despite catastrophic declines on several continents, many affected species have experienced population recoveries after epidemics. However, the potential ongoing threat of endemic Bd in these recovered or recovering populations is still poorly understood. We investigated the threat of endemic Bd to frog populations that recovered after initial precipitous declines, focusing on the endangered rainforest frog Mixophyes fleayi. We conducted extensive field surveys over 4 years at three independent sites in eastern Australia. First, we compared Bd infection prevalence and infection intensities within frog communities to reveal species‐specific infection patterns. Then, we analyzed mark‐recapture data of M. fleayi to estimate the impact of Bd infection intensity on apparent mortality rates and Bd infection dynamics. We found that M. fleayi had lower infection intensities than sympatric frogs across the three sites, and cleared infections at higher rates than they gained infections throughout the study period. By incorporating time‐varying individual infection intensities, we show that healthy M. fleayi populations persist despite increased apparent mortality associated with infrequent high Bd loads. Infection dynamics were influenced by environmental conditions, with Bd prevalence, infection intensity, and rates of gaining infection associated with lower temperatures and increased rainfall. However, mortality remained constant year‐round despite these fluctuations in Bd infections, suggesting major mortality events did not occur over the study period. Together, our results demonstrate that while Bd is still a potential threat to recovered populations of M. fleayi, high rates of clearing infections and generally low average infection loads likely minimize mortality caused by Bd. Our results are consistent with pathogen resistance contributing to the coexistence of M. fleayi with endemic Bd. We emphasize the importance of incorporating infection intensity into disease models rather than infection status alone. Similar population and infection dynamics likely exist within other recovered amphibian‐Bd systems around the globe, promising longer‐term persistence in the face of endemic chytridiomycosis. [ABSTRACT FROM AUTHOR]

1. Host density is hypothesized to be a major driver of variability in the responses and outcomes of wildlife populations following pathogen invasion. While the effects of host density on pathogen transmission have been extensively studied, these studies are dominated by theoretical analyses and small‐scale experiments. This focus leads to an incomplete picture regarding how host density drives observed variability in disease outcomes in the field. 2. Here, we leveraged a dataset of hundreds of replicate amphibian populations that varied by orders of magnitude in host density. We used these data to test the effects of host density on three outcomes following the arrival of the amphibian‐killing fungal pathogen Batrachochytrium dendrobatidis (Bd): the probability that Bd successfully invaded a host population and led to a pathogen outbreak, the magnitude of the host population‐level decline following an outbreak and within‐host infection dynamics that drive population‐level outcomes in amphibian–pathogen systems. 3. Based on previous small‐scale transmission experiments, we expected that populations with higher densities would be more likely to experience Bd outbreaks and would suffer larger proportional declines following outbreaks. To test these predictions, we developed and fitted a Hidden Markov Model that accounted for imperfectly observed disease outbreak states in the amphibian populations we surveyed. 4. Contrary to our predictions, we found minimal effects of host density on the probability of successful Bd invasion, the magnitude of population decline following Bd invasion and the dynamics of within‐host infection intensity. Environmental conditions, such as summer temperature, winter severity and the presence of pathogen reservoirs, were more predictive of variability in disease outcomes. 5. Our results highlight the limitations of extrapolating findings from small‐scale transmission experiments to observed disease trajectories in the field and provide strong evidence that variability in host density does not necessarily drive variability in host population responses following pathogen arrival. In an applied context, we show that feedbacks between host density and disease will not necessarily affect the success of reintroduction efforts in amphibian‐Bd systems of conservation concern. [ABSTRACT FROM AUTHOR]

Reintroductions may mitigate the effects of severe amphibian declines, but chytridiomycosis—the often‐deadly disease caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd)—can hinder these efforts. Exposing amphibians to the pathogen ex situ may improve disease outcomes post‐release. We experimentally inoculated federally threatened California red‐legged frogs (Rana draytonii) ex situ, cleared Bd infections, and then released them to the wild for monitoring in an area where Bd is present. Ex situ, previously exposed frogs had lower Bd loads than previously uninfected frogs, and all exposure groups, including previously uninfected frogs, naturally reduced their Bd loads in two independent experiments. After release to the wild, we observed no differences in field‐contracted Bd infection among exposure groups. Treating post‐metamorphic R. draytonii ex situ may not confer additional post‐release benefit to this species in terms of chytridiomycosis burden. Our results, however, do not necessarily mirror Bd susceptibility throughout the amphibian life cycle, with other source populations that may have different Bd infection histories, or responses to different Bd strains. These results provide a clearer understanding of post‐release disease responses of a threatened, Bd‐susceptible species with prior pathogen exposure. Following ex situ experiments with in situ applications can provide a more comprehensive understanding of threat outcomes for declining species in reintroduction programs and strengthen critical links between ex situ and in situ conservation partners. [ABSTRACT FROM AUTHOR]

Keywords: amphibian chytridiomycosis; Batrachochytrium dendrobatidis; global wildlife trade; pathogen pollution; pathogen virulence; contaminación por patógenos; mercado mundial de fauna; quitridiomicosis anfibia; virulencia patógena; ; ; ; ; EN amphibian chytridiomycosis Batrachochytrium dendrobatidis global wildlife trade pathogen pollution pathogen virulence contaminación por patógenos mercado mundial de fauna quitridiomicosis anfibia virulencia patógena 1 9 9 10/04/22 20221001 NES 221001 INTRODUCTION Emerging infectious diseases (EIDs) increasingly threaten global biodiversity, which, in turn, can negatively affect public health and economic prosperity (Daszak et al., 2000). Batrachochytrium dendrobatidis, pathogen pollution, pathogen virulence, contaminación por patógenos, mercado mundial de fauna, quitridiomicosis anfibia, virulencia patógena, , , , , , amphibian chytridiomycosis, global wildlife trade First evidence of amphibian chytrid fungus (Batrachochytrium dendrobatidis) and ranavirus in Hong Kong amphibian trade. Rapid response to evaluate the presence of amphibian chytrid fungus (Batrachochytrium dendrobatidis) and ranavirus in wild amphibian populations in Madagascar. [Extracted from the article]

Batrachochytrium dendrobatidis (Bd) has been associated with massive amphibian population declines worldwide. Wildlife vaccination campaigns have proven effective for mitigating damage from other pathogens, and there is evidence that adult frogs can acquire resistance to Bd when exposed to killed Bd zoospores and the metabolites they produced.Here, we investigated whether Cuban treefrogs tadpoles Osteopilus septentrionalis can gain protection from Bd through exposure to a prophylaxis treatment composed of killed zoospores or soluble Bd metabolites. We used a 2 × 2 factorial design, crossing the presence or absence of killed zoospores with the presence or absence of Bd metabolites. All hosts were subsequently exposed to live Bd to evaluate susceptibility.Exposure to killed zoospores did not induce a protective response. However, tadpoles exposed to Bd metabolites had significantly lower Bd intensity and prevalence than tadpoles that were not exposed to metabolites.The metabolites Bd produce pose no risk of Bd infection and therefore make an epidemiologically safe prophylaxis treatment, protecting tadpoles against Bd. This work provides a promising potential for protecting amphibians in the wild as a disease management strategy for controlling Bd‐associated declines. [ABSTRACT FROM AUTHOR]

Effective management of wildlife populations threatened by disease requires accurate predictions about the consequences of intervention. However, generating such predictions is challenging, especially for organisms with complex life histories that are also threatened by climate change, such as montane amphibians. Cascades frogs (Rana cascadae) in northern California have experienced dramatic declines associated with the fungal pathogen Batrachochytrium dendrobatidis (Bd), and remnant populations are also threatened by changing climate conditions. We evaluated the population‐level impacts of treating Cascades frog metamorphs with the antifungal chemical itraconazole using a field experiment and population simulations. We explored the influence of larval habitat on these treatment effects by including metamorphs from different larval habitat types. We found that frogs treated with itraconazole were more than four times more likely to survive their first winter than untreated controls and had reduced Bd infection intensity compared to other surviving frogs from the same cohort in the following year. We also found an effect of larval habitat type on Bd infection in recently metamorphosed frogs, with the lowest levels of infection occurring in frogs emerging from larval habitats that tend to be intermediate in temperature and drying rate. Applying the differential apparent overwinter survival of treated and untreated metamorphs to population projections suggests that intermittent antifungal treatment of metamorphs has the potential to restore population viability. Our results indicate that in situ treatment of individual hosts may be a useful component of a comprehensive management strategy to reduce the risk of pathogen‐mediated population declines and extirpations. [ABSTRACT FROM AUTHOR]

Climate change is increasing variability in precipitation patterns in many parts of the globe. Unpredictable changes in water availability can be particularly challenging for organisms that rely on precipitation‐fed water sources for completing their life cycle, such as many amphibian species. Although developmental plasticity can mitigate the impacts of changing environments for some species, this strategy can come at a cost to other fitness‐linked traits, such as immune function. We investigated localized variation in the capacity to respond to pond drying and evaluated whether developmental responses induced carry‐over effects in disease susceptibility in three leopard frog species (Rana [Lithobates] pipiens and Rana sphenocephala; two populations each, and one population of Rana chiricahuensis). Using mesocosms located near the site of collection (<15 km away) in five regions spanning a latitudinal gradient, we raised tadpoles under simulated fast drying, slow drying, or constant water levels. After metamorphosis, we characterized several aspects of the skin microbiome, immune function, and response to exposure to the fungal pathogen Batrachochytrium dendrobatidis (Bd). Note that for R. chiricahuensis, the only carry‐over effect measured was response to Bd exposure, for which we observed no effects of pond drying. We found that developmental plasticity in response to drying was rare, except in the southernmost population of R. sphenocephala. In this location, tadpoles responded by accelerating development, and frogs with shorter larval periods developed more severe infections following Bd exposure post‐metamorphosis, suggesting a trade‐off between surviving pond drying and pathogen defense investment. In the three other locations, a lack of accelerated metamorphosis in drying treatments was accompanied by increased mortality, decreased anti‐Bd function of the microbiome, and/or greater Bd infection after exposure. Overall, results suggest that faster drying conditions will likely have negative impacts on amphibians with long larval periods, both directly and indirectly via carry‐over effects. Because effects of drying exposure were not uniform within a species, our findings suggest that local responses may not be generalizable to other regions of the range. These multifaceted effects of climate change on pathogen defenses are increasingly relevant as emerging infectious diseases threaten global biodiversity. [ABSTRACT FROM AUTHOR]

Threatening processes, such as disease, can drive major changes in population demographics of the host. Chytridiomycosis, caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd), has led to the decline of at least 500 amphibian species across the globe and has been shown to truncate host age structure by lowering adult survival rates. This results in heavy reliance on annual recruitment and the inability to recover in the event of periodic recruitment failure. We used skeletochronology to determine the age structure, growth, and survival rates of populations of an endangered amphibian, Litoria raniformis, with endemic chytridiomycosis, across two climatically disparate regions in south‐eastern Australia: semi‐arid and temperate. Contrary to predictions, populations in the semi‐arid region (in which chytrid prevalence is substantially lower due to high temperatures) displayed a more truncated age structure than populations in the temperate study regions. Maximum recorded age was only two years in the semi‐arid region compared with up to four years in the temperate region. Wetland hydroperiod and average seasonal air temperature were correlated with age, and males had a slightly higher survival rate than females (0.31 for males and 0.27 for females). Despite the previously documented differences in chytrid prevalence between the two climatic regions, water availability and wetland hydroperiods appear the over‐riding determinants of the age structure and survival rates of L. raniformis. Targeted management which ensures water availability and improves survival of 1‐year‐old frogs into their second and third breeding season would reduce the impact of stochastic events on L. raniformis, and this may be true for numerous frog species susceptible to chytridiomycosis. [ABSTRACT FROM AUTHOR]

Amphibian chytridiomycosis, caused by Batrachochytrium dendrobatidis (Bd), has been recognized as the infectious disease causing the most catastrophic loss of biodiversity known to science, with South America being the most impacted region. We tested whether Bd prevalence is distributed among host taxonomy, ecoregion, conservation status and habitat preference in South America. Here we provide a synthesis on the extent of Bd infection across South America based on 21 648 molecular diagnostic assays, roles of certain species in the epidemiology of Bd and explore its association with the reported amphibian catastrophic declines in the region. We show that Bd is widespread, with a continental prevalence of 23.2%. Its occurrence in the region shows a phylogenetic signal and the probability of infection is determined by ecoregion, preferred habitat and extinction risk hosts' traits. The taxa exhibiting highest Bd occurrence were mostly aquatic amphibians, including Ranidae, Telmatobiidae, Hylodidae, Calyptocephalellidae and Pipidae. Surprisingly, families exhibiting unusually low Bd prevalence included species in which lethal chytridiomycosis and population declines have been described (genera Atelopus, Rhinoderma and Eleutherodactylus). Higher than expected prevalence of Bd occurred mainly in amphibians living in association with mountain environments in the Andes and Atlantic forests, reflecting highly favourable Bd habitats in these areas. Invasive amphibian species (e.g. Lithobates catesbeianus and Xenopus laevis) exhibited high Bd prevalence; thus we suggest using these as sentinels to understand their potential role as reservoirs, vectors or spreaders of Bd that can be subjected to management. Our results guide on the prioritization of conservation actions to prevent further biodiversity loss due to chytridiomycosis in the world's most amphibian diverse region. [ABSTRACT FROM AUTHOR]

The remoteness and isolation of South American tabletop mountain (tepui) summits may protect against infections that underpin global amphibian declines. Increases in recreational pressure in such unspoiled destinations, and in isolated ecosystems globally, pose a poorly understood risk of wildlife disease introduction, especially in supposedly immunologically naïve communities. We here report the first observed chytrid infections in the Pantepui biogeographical region. Infections significantly correlate with proximity to the nearest basic tourist infrastructure in four endemic amphibians occurring on tepui summits and their slopes. Phylogenetic relationships and environmental context suggest a high risk of severe and irreversible population declines in unique, early branching amphibians. These findings advocate for an urgent control of recreational pressure in isolated, highly vulnerable ecosystems. [ABSTRACT FROM AUTHOR]

Infectious disease systems frequently exhibit strong seasonal patterns, yet the mechanisms that underpin intra‐annual cycles are unclear, particularly in tropical regions. We hypothesized that host immune function fluctuates seasonally, contributing to oscillations in infection patterns in a tropical disease system. To test this hypothesis, we investigated a key host defense of amphibians against a lethal fungal pathogen, Batrachochytrium dendrobatidis (Bd). We integrated two field experiments in which we perturbed amphibian skin secretions, a critical host immune mechanism, in Panamanian rocket frogs (Colostethus panamansis). We found that this immunosuppressive technique of reducing skin secretions in wild frog populations increased Bd prevalence and infection intensity, indicating that this immune defense contributes to resistance to Bd in wild frog populations. We also found that the chemical composition and anti‐Bd effectiveness of frog skin secretions varied across seasons, with greater pathogen inhibition during the dry season relative to the wet season. These results suggest that the effectiveness of this host defense mechanism shifts across seasons, likely contributing to seasonal infection patterns in a lethal disease system. More broadly, our findings indicate that host immune defenses can fluctuate across seasons, even in tropical regions where temperatures are relatively stable, which advances our understanding of intra‐annual cycles of infectious disease dynamics. [ABSTRACT FROM AUTHOR]

Emerging infectious diseases are a serious threat to wildlife populations, and there is growing evidence that host microbiomes play important roles in infection dynamics, possibly even mitigating diseases. Nevertheless, most research on this topic has focused only on bacterial microbiomes, while fungal microbiomes have been largely neglected. To help fill this gap in our knowledge, we examined both the bacterial and fungal microbiomes of four sympatric Australian frog species, which had different population‐level responses to the emergence of chytridiomycosis, a widespread disease caused by the fungal pathogen Batrachochytrium dendrobatidis (Bd). We sequenced 16,884 fungal amplicon sequence variants (ASVs) and 41,774 bacterial ASVs. Bacterial communities had higher richness and were less variable within frog species than were fungal communities. Nevertheless, both communities were correlated for both ASV richness and beta diversity (i.e., frogs with similar bacterial richness and community composition tended to also have similar fungal richness and community composition). This suggests that either one microbial community was having a large impact on the other or that they were both being driven by similar environmental factors. For both microbial taxa, we found little evidence of associations between Bd (prevalence or intensity) and either individuals' ASVs or beta diversity. However, there was mixed evidence of associations between richness (both bacterial and fungal) and Bd, with high richness potentially providing a protective effect. Surprisingly, the relative abundance of bacteria that have previously been shown to inhibit Bd was also positively associated with Bd infection intensity, suggesting that a high relative abundance of those bacteria provides poor protection against infection. [ABSTRACT FROM AUTHOR]

Aim: Amphibians, with over 40% of assessed species listed as threatened, are disproportionately at risk in the global extinction crisis. Among the many factors implicated in the ongoing loss of amphibian biodiversity are climate change and the disease chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd). These threats are of particular concern in Australia, where Bd has been implicated in the declines of at least 43 frog species, and climate change is emerging as an additional threat. We explore how climate change is likely to affect the distributions of Australian frog species and Bd to the year 2100, and how the spatial and climatic niche overlap between chytridiomycosis‐declined frogs and Bd could shift. Location: Australia. Methods: We used species distribution modelling to infer the current and future distribution of 141 Australian frog species and Bd, under two emissions scenarios. We used various metrics of niche similarity to quantify predicted alterations to spatial interactions between Bd and frog species. Results: Climate change is likely to have a variable impact on frog distributions in Australia, with some 23 and 47 species, primarily in southern Australia, predicted to lose at least 30% of their current distributions under low and high emissions scenarios, respectively. In contrast, 69 and 68 species, respectively, have potential to increase their distributions, primarily in northern Australia. While the distribution of Bd is predicted to decrease, the proportional spatial and niche overlap between Bd and susceptible frog species is predicted to remain little changed, and in some cases, to increase. Main conclusions: Although effects will be variable across the continent, climate change is likely to be a threatening factor to many Australian frog species. Additionally, chytridiomycosis is likely to remain a significant threat to many frog species, as any reductions to the pathogen's distribution largely coincide with geographic range contractions of chytridiomycosis‐susceptible species. [ABSTRACT FROM AUTHOR]

Many aspects of ectotherm physiology are temperature‐dependent. The immune system of temperate‐dwelling ectothermic host species is no exception and their immune function is often downregulated in cold temperatures. Likewise, species of ectothermic pathogens experience temperature‐mediated effects on rates of transmission and/or virulence. Although seemingly straightforward, predicting the outcomes of ectothermic host−pathogen interactions is quite challenging. A recent hypothesis termed the thermal mismatch hypothesis posits that cool‐adapted host species should be most susceptible to pathogen infection during warm temperature periods whereas warm‐adapted host species should be most susceptible to pathogens during periods of cool temperatures. We explore this hypothesis using two ecologically and physiologically differentiated color morphs of the Eastern Red‐backed Salamander (Plethodon cinereus) and a pathogenic chytrid fungus (Batrachochytrium dendrobatidis; hereafter "Bd") using a fully factorial laboratory experiment. At cool temperatures, unstriped salamanders (i.e., those that are tolerant of warm temperatures) had a significantly higher probability of Bd infection compared with cool‐tolerant striped salamanders, consistent with the thermal mismatch hypothesis. However, we found no support for this hypothesis when salamanders were exposed to Bd at warm temperatures: the probability of Bd infection in the cool‐tolerant striped salamanders was nearly identical in both cool and warm temperatures, opposite the predictions of the thermal mismatch hypothesis. Our results are most consistent with the fact that Bd grows poorly at warm temperatures. Alternatively, our data could indicate that the two color morphs do not differ in their tolerance to warm temperatures but that striped salamanders are more tolerant to cool temperatures than unstriped salamanders. Research Highlights: In a test of the thermal mismatch hypothesis, we found that in cool temperatures, warm‐tolerant salamanders had higher parasitism compared with cool‐tolerant salamanders. There was no difference in parasitism for salamanders in warm temperatures. [ABSTRACT FROM AUTHOR]

Chytridiomycosis, caused by the fungi Batrachochytrium dendrobatidis and Batrachochytrium salamandrivorans, is associated with massive amphibian mortality events worldwide and with some species' extinctions. Previous ecological niche models suggest that B. dendrobatidis is not well‐suited to northern, temperate climates, but these predictions have often relied on datasets in which northern latitudes are underrepresented. Recent northern detections of B. dendrobatidis suggest that these models may have underestimated the suitability of higher latitudes for this fungus. We used qPCR to test for B. dendrobatidis in 1,041 non‐invasive epithelial swab samples from 18 species of amphibians collected across 735,345 km2 in Ontario and Akimiski Island (Nunavut), Canada. We detected the pathogen in 113 samples (10.9%) from 11 species. Only one specimen exhibited potential clinical signs of disease. We used these data to produce six Species Distribution Models of B. dendrobatidis, which classified half of the study area as potential habitat for the fungus. We also tested each sample for B. salamandrivorans, an emerging pathogen that is causing alarming declines in European salamanders, but is not yet detected in North America. We did not detect B. salamandrivorans in any of the samples, providing a baseline for future surveillance. We assessed the potential risk of future introduction by comparing salamander richness to temperature‐dependent mortality, predicted by a previous exposure study. Areas with the highest species diversity and predicted mortality risk extended 60,530 km2 across southern Ontario, highlighting the potential threat B. salamandrivorans poses to northern Nearctic amphibians. Preventing initial introduction will require coordinated, transboundary regulation of trade in amphibians (including frogs that can carry and disperse B. salamandrivorans), and surveillance of the pathways of introduction (e.g., water and wildlife). Our results can inform surveillance for both pathogens and efforts to mitigate the spread of chytridiomycosis through wild populations. [ABSTRACT FROM AUTHOR]

Research Highlight: Valenzuela‐Sánchez, A., Azat, C., Cunningham, A. A., Delgado, S., Bacigalupe, L. D., Beltrand, J., Serrano, J. M., Sentenac, H., Haddow, N., Toledo, V., Schmidt, B. R., & Cayuela, H. (2022). Interpopulation differences in male reproductive effort drive the population dynamics of a host exposed to an emerging fungal pathogen. Journal of Animal Ecology, 00, 1– 12. https://doi.org/10.1111/1365‐2656.13603. Understanding the nuances of population persistence in the face of a stressor can help predict extinction risk and guide conservation actions. However, the exact mechanisms driving population stability may not always be known. In this paper, Valenzuela‐Sánchez et al. (2022) integrate long‐term mark–recapture data, focal measurements of reproductive effort, a population matrix model and inferences on life‐history variation to reveal differences in demographic response to disease in a susceptible frog species (Rhinoderma darwinii). Valenzuela‐Sánchez et al. found that demographic compensation via recruitment explained the positive population growth rate in their high disease prevalence population whereas the low disease prevalence population did not compensate and thus had decreasing population growth. Compensatory recruitment was likely due to the high probability of males brooding, and the high number of brooded larvae in the high prevalence population compared to low prevalence and disease‐free populations. Valenzuela‐Sánchez et al. also document faster generation times in the high prevalence population, which may indicate a faster life history that may be contributing to the population's ability to compensate for reduced survival. Lastly, the authors find a positive relationship between disease prevalence and the proportion of juveniles in a given population that suggest that there may be a threshold for disease prevalence that triggers increased reproductive effort. Altogether, their study provides novel support for increased reproductive effort as the pathway for compensatory recruitment leading to increasing population growth despite strong negative effects of disease on adult survival. Their results also caution the overgeneralization of the effects of stressors (e.g. disease) on population dynamics, where context‐dependent responses may differ among host populations of a given species. [ABSTRACT FROM AUTHOR]

Compensatory recruitment is a key demographic mechanism that has allowed the coexistence of populations of susceptible amphibians with Batrachochytrium dendrobatidis (Bd), a fungus causing one of the most devastating emerging infectious disease ever recorded among vertebrates. However, the underlying processes (e.g. density‐dependent increase in survival at early life stages, change in reproductive traits) as well as the level of interpopulation variation in this response are poorly known.We explore potential mechanisms of compensatory recruitment in response to Bd infection by taking advantage of an amphibian system where male reproductive traits are easy to quantify in free‐living populations. The Southern Darwin's frog Rhinoderma darwinii is a vocal sac‐brooding species that exhibits a high susceptibility to lethal Bd infection.Using a 7‐year capture–recapture study at four populations with contrasting Bd infection status (one high prevalence, one low prevalence and two Bd‐free populations), we evaluated whether Bd‐positive populations exhibited a higher adult recruitment and a higher male reproductive effort than Bd‐negative populations. We also estimated population growth rates to explore whether recruitment compensated for the negative impacts of Bd on the survival of adults. In addition, we evaluated a potential demographic signal of compensatory recruitment (i.e. positive relationship between the proportion of juveniles and Bd prevalence) in response to Bd infection using raw count data from 13 R. darwinii populations.The high Bd prevalence population exhibited the highest male reproductive effort and the highest recruitment among the four monitored populations. This led to a growing population during the study period despite high mortality of adult hosts. In contrast, males from the population with low Bd prevalence had a low reproductive effort and this population, which had the lowest adult recruitment, was declining during the study period despite adults having a higher survival in comparison to the high Bd prevalence population. We also found a demographic signal of compensatory recruitment in response to Bd infection in our broader analysis of 13 R. darwinii populations.Our study underlines the importance of interpopulation variation in life‐history strategies on the fate of host populations after infectious disease emergence. Our results also suggest that an increase in reproductive effort can be one of the processes underlying compensatory recruitment in populations of Bd‐susceptible amphibians. [ABSTRACT FROM AUTHOR]

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While the amphibian disease chytridiomycosis is causing ongoing population declines and biodiversity losses around the globe, efficient mitigation strategies are lacking. The free‐living zoospores of the causative agents of this disease, the chytrid pathogens Batrachochytrium dendrobatidis (Bd) and Batrachochytrium salamandrivorans (Bsal), are a potential food source for filter‐feeding micropredators as part of the aquatic food web. While consumption of zoospores can lower environmental pathogen loads, alternative food sources may interfere with pathogen removal rates.We compared the ability of three filter‐feeding zooplankton species, the cladoceran Daphnia magna, the rotifer Brachionus calyciflorus and the ostracod Heterocypris incongruens, to remove Bd zoospores in water and investigated the effect of alternative food sources, the green algae Pseudokirchneriella subcapitata and Chlorella vulgaris, on zoospore ingestion by D. magna.Daphnia magna was the only micropredator candidate that effectively removed Bd zoospores from its environment, with an average removal rate of 1,012 ± 542 GE ind.−1 hr−1 within our test system. High concentrations (1 × 105 cells/ml) of large and easily ingestible P. subcapitata reduced pathogen removal rates, whereas the small and less edible C. vulgaris did not interfere with pathogen removal.Synthesis and applications. We showed that Daphnia spp., which are keystone species in all sorts of aquatic habitats worldwide, are promising target agents for biologically mitigating chytridiomycosis infections and how natural food sources may interfere with this strategy. We also suggest potential management actions for biological disease mitigation, aiming to optimize environmental conditions for these target filter feeders, thereby reducing pathogen densities and eventually infection pressure in amphibian hosts. Examples of such management actions include, but are not limited to, removal of planktivorous fish, habitat restoration, nutrient control or agrochemical regulation in the vicinity of amphibian breeding ponds. Further studies, including field trials, are needed to confirm the effects of pathogen consumption on infection dynamics in natural situations and investigate the impact of intervention actions. [ABSTRACT FROM AUTHOR]

Amphibian biodiversity is experiencing ongoing declines due in part to the infectious disease, chytridiomycosis. Efforts to mitigate the effects of the causal agent of chytridiomycosis, Batrachochytrium dendrobatidis (Bd), in the wild have not been wholly effective. Translocations are an important management tool for amphibians, and immunizations represent a possible strategy for preparing amphibians for release across a landscape where Bd exists.We evaluated the utility of using an isolate of Bd that was shown to be hypovirulent to the relict leopard frog Rana onca as a transmissible inoculum for promoting chytridiomycosis resistance. We conducted a co‐housing experiment to determine if the isolate we used could be passed between R. onca without increasing in virulence. We then followed with an experiment where frogs that were exposed to the hypovirulent isolate were then challenged with a virulent Bd isolate. In other experiments, we evaluated whether Bd infections followed by clearance with itraconazole (an antifungal) could increase resistance to chytridiomycosis in R. onca and Rana pipiens (northern leopard frog).We found that our hypovirulent Bd inoculation was transmissible between hosts, did not cause chytridiomycosis and was effective at imparting long‐term chytridiomycosis resistance. Rana onca inoculated with the hypovirulent Bd isolate had lower pathogen burdens and were 55 times more likely to survive infections by a virulent Bd isolate than non‐inoculated frogs.For both species, prior exposure to Bd followed by infection clearance with itraconazole resulted in significantly increased survivorship and lower pathogen burdens as compared to controls that had no prior Bd exposure. Rana onca that were previously exposed to Bd were more than 15 times more likely to survive infections. Previously exposed R. pipiens survived in higher proportions than controls, but with weaker statistical support.Synthesis and Applications. Translocations are an important management tool for many amphibian conservation programs. For amphibian species that have experienced declines due to the disease chytridiomycosis [caused by the pathogen Batrachochytrium dendrobatidis (Bd)], the success of translocations may be limited due to the persistent threat of the disease in the wild. We completed a series of experiments aimed at increasing amphibian resistance to chytridiomycosis using low‐virulence, transmissible Bd inoculations and Bd infection followed by clearance with an antifungal (itraconazole). Our low‐virulence Bd inoculations were transmissible, did not cause disease and provided long‐term resistance against chytridiomycosis. Similarly, infection with Bd and clearance with itraconazole led to increased resistance to chytridiomycosis in subsequent exposures. The use of a low‐virulence Bd inoculation could be further developed into a transmissible vaccine, propagating the protective benefits beyond individuals that can be directly inoculated. At this stage, we advise that using the alternative approach of infecting frogs with Bd from translocation sites followed by clearance of infections with itraconazole may be sensible for increasing host resistance to chytridiomycosis. [ABSTRACT FROM AUTHOR]

But given the shortfalls in knowledge, technical solutions, and the current gap in our ability to concurrently meet human and biodiversity needs, we argue for more recognition of the additional challenges facing species conservation and the value of working to overcome them. LACK OF KNOWLEDGE ABOUT HOW TO SAVE THREATENED SPECIES Wiedenfeld et al. argue that "the number of extant species that cannot be recovered to a global population at greatly reduced risk of extinction is very low." Keywords: extinction prevention; knowledge shortfalls; threatened species EN extinction prevention knowledge shortfalls threatened species 1 3 3 08/01/22 20220801 NES 220801 INTRODUCTION We agree with Wiedenfeld et al. (2021) that a core mission of conservation science is to not give up on species. [Extracted from the article]

The recently emerged fungal pathogen, Batrachochytrium salamandrivorans (Bsal) causes the lethal skin disease chytridiomycosis in susceptible salamander species and is predicted to emerge within the Americas with devastating consequences. Host responses to Bsal are variable but the factors underlying these differences are unknown. To investigate the role of skin‐associated immune defenses against Bsal and the closely related, B. dendrobatidis (Bd), we sampled skin peptides from wild and captive North American salamanders (spotted salamanders [Ambystoma maculatum], n = 10; hellbenders [Cryptobranchus alleganiensis], n = 2; red‐legged salamanders [Plethodon shermani], n = 18; and Ocoee salamanders [Desmognathus ocoee], n = 15) and conducted in vitro experimental assays to test whether salamander skin peptides inhibit chytrid growth. Interspecies differences in skin defenses against Bsal and Bd, and peptide mixtures were also assessed using a standardized measure and RP‐HPLC, respectively. For A. maculatum, skin peptides inhibited Bsal and Bd growth, consistent with known Bsal resistance. Cryptobranchus alleganiensis skin peptides inhibited the growth of Bsal but not Bd. Plethodon shermani and D. ocoee skin peptides facilitated Bsal growth and had either no effect or inconsistent effects on Bd growth. With the exception of A. maculatum, most species had relatively weak skin defenses against both chytrid pathogens. Collectively, we demonstrate that salamander skin peptide defenses against chytrid pathogens are highly variable and not always equally effective against Bsal and Bd. By advancing knowledge about the factors underlying chytrid susceptibility, particularly Bsal, our findings will help inform conservation initiatives aimed at reducing disease impacts and biodiversity loss. [ABSTRACT FROM AUTHOR]

The amphibian chytrid fungal pathogen (Batrachochytrium dendrobatidis, henceforth Bd) has had a devastating impact on biodiversity, causing the decline or extinction of over 500 amphibian species. Yet, our understanding of Bd transmission pathways remains incomplete, in particular for host species with weak aquatic associations, and between reservoir and susceptible host species. We examined Bd transmission from a potential reservoir host to a potentially susceptible critically endangered host; directly assessing the capacity of the former to transmit Bd, and the susceptibility of the latter as a Bd host. Using cohousing versus sequential use of the same enclosure by the two species, we distinguished the effects of direct versus indirect (environmental) transmission. Our study provides clear evidence that both direct and indirect terrestrial transmission from a reservoir to susceptible host species results in fatal chytridiomycosis. Transmission mode had no effect on overall morbidity or disease progression in the susceptible species. Our results demonstrate that reservoir and susceptible hosts do not need to be in the same place at the same time, or within an aquatic environment for transmission to occur. Our demonstration of indirect terrestrial transmission from a reservoir to susceptible host identifies mechanisms by which Bd may drive ongoing declines in populations where the pathogen is now endemic. Identifying these transmission pathways is important for understanding long‐term extinction vulnerability of remnant populations of declining species challenged by disease. [ABSTRACT FROM AUTHOR]

Lethal and sublethal effects of pathogens should theoretically select for host avoidance of these pathogenic organisms. Some amphibians can learn to avoid the pathogenic fungus Batrachochytrium dendrobatidis (Bd) after one infection‐clearance event.Here, we investigated whether four taxonomically distinct amphibians, Cuban tree frogs Osteopilus septentrionalis, southern toads Anaxyrus (Bufo) terrestris, greenhouse frogs Eleutherodactylus planirostris and pine woods tree frogs Hyla femoralis, exhibited any innate or learned avoidance of Bd on a moist substrate and, if so, what cues they used to identify the fungus.Cuban tree frogs, pine woods tree frogs and greenhouse frogs did not appear to exhibit detectable innate or learned avoidance of Bd. However, southern toads learned to avoid Bd after only one exposure. Southern toads avoided any treatment containing Bd metabolites but did not avoid treatments that lacked Bd metabolites even when dead zoospores were present.Bd metabolites appeared to be the cues that amphibians use to avoid Bd. These metabolites may have a distinct smell or may cause discomfort, which would be consistent with a classical or Pavlovian conditioning response.Synthesis and applications. Not all species of amphibians respond the same way to Bd exposure; some can learn to avoid Bd and the metabolites it produces, while others do not. These findings have important implications for both management practices and policy, and should be considered when developing disease models and conservation plans for amphibians. [ABSTRACT FROM AUTHOR]

The ability of an organism to tolerate seasonal temperature changes, such as extremely cold temperatures during the winter, can be influenced by their pathogens. We tested how exposure to a virulent fungal pathogen, Batrachochytrium dendrobatidis (Bd), affected the critical thermal minimum (CTmin) of two frog species, Hyla versicolor (gray treefrog) and Lithobates palustris (pickerel frog). The CTmin is the minimum thermal performance point of an organism, which we estimated via righting response trials. For both frog species, we compared the righting response of Bd-exposed and Bd-unexposed individuals in either a constant (15ºC) environment or with decreasing temperatures (-1°C/2.5 min) starting from 15°C. The CTmin for both species was higher for Bd-exposed frogs than unexposed frogs, and the CTmin of H. versicolor was higher than L. palustris. We also found that Bd-exposed frogs of both species righted themselves significantly fewer times in both decreasing and constant temperature trials. Our findings show that pathogen exposure can reduce cold tolerance and limit the thermal performance range of hosts, which may lead to increased overwintering mortality. [ABSTRACT FROM AUTHOR]

The ability to detect and monitor infectious disease in a phylogenetically informative manner is critical for their management. Phylogenetically informative diagnostic tests enable patterns of pathogen introduction or changes in the distribution of genotypes to be measured, enabling research into the ecology of the pathogen. Batrachochytrium dendrobatidis (Bd), a causative agent of chytridiomycosis in amphibian populations, emerged worldwide in the 21st century and is composed of six lineages which are display varying levels of virulence in their hosts. Research into the distribution, ecology and pathogenicity of these lineages has been hampered by an inability to type lineage efficiently. Here, we describe a lineage‐specific TaqMan qPCR assay that differentiates the two lineages of Bd most commonly associated with chytridiomycosis: BdGPL and BdCAPE. We demonstrate how this assay can be used for the surveillance of wild populations of amphibians in Southern Africa using skin swabs, tissue samples and cultured isolates. see also the Perspective by Claudio Azat [ABSTRACT FROM AUTHOR]

Starting in 2010, rapid fire salamander (Salamandra salamandra) population declines in northwestern Europe heralded the emergence of Batrachochytrium salamandrivorans (Bsal), a salamander‐pathogenic chytrid fungus. Bsal poses an imminent threat to global salamander diversity owing to its wide host range, high pathogenicity, and long‐term persistence in ecosystems. While there is a pressing need to develop further research and conservation actions, data limitations inherent to recent pathogen emergence obscure necessary insights into Bsal disease ecology. Here, we use a hierarchical modeling framework to describe Bsal landscape epidemiology of outbreak sites in light of these methodological challenges. Using model selection and machine learning, we find that Bsal presence is associated with humid and relatively cool, stable climates. Outbreaks are generally located in areas characterized by low landscape heterogeneity and low steepness of slope. We further find an association between Bsal presence and high trail density, suggesting that human‐mediated spread may increase risk for spillover between populations. We then use distribution modeling to show that favorable conditions occur in lowlands influenced by the North Sea, where increased survey effort is needed to determine how Bsal impacts local newt populations, but also in hill‐ and mountain ranges in northeastern France and the lower half of Germany. Finally, connectivity analyses suggest that these hill‐ and mountain ranges may act as stepping stones for further spread southward. Our results provide initial insight into regional environmental conditions underlying Bsal epizootics, present updated invasibility predictions for northwestern Europe, and lead us to discuss a wide variety of potential survey and research actions needed to advance future conservation and mitigation efforts. [ABSTRACT FROM AUTHOR]

Resistance and tolerance are unique host defence strategies that can limit the impacts of a pathogen on a host. However, for most wildlife–pathogen systems, there are still fundamental uncertainties regarding (a) how changes in resistance and tolerance can affect disease outcomes and (b) the mechanisms underlying resistance and tolerance in host populations.Here, we first compared observed patterns of resistance and tolerance and their effects on disease outcomes among salamander species that are susceptible to infection and mortality from the emerging fungal pathogen Batrachochytrium salamandrivorans (Bsal). We then tested whether two putative mechanisms that contribute to host resistance and tolerance, skin sloughing and skin lesion reduction, predicted reduced Bsal growth rate or increased host survival during infection, respectively.We performed multi‐dose Bsal challenge experiments on four species of Salamandridae found throughout North America. We combined the laboratory experiments with dynamic models and sensitivity analysis to examine how changes in load‐dependent resistance and tolerance functions affected Bsal‐induced mortality risk. Finally, we used our disease model to test whether skin sloughing and lesion reduction predicted variability in infection outcomes not described by Bsal infection intensity.We found that resistance and tolerance differed significantly among salamander species, with the most susceptible species being both less resistance and less tolerant of Bsal infection. Our dynamic model showed that the relative influence of resistance versus tolerance on host survival was species‐dependent—increasing resistance was only more influential than increasing tolerance for the least tolerant species where changes in pathogen load had a threshold‐like effect on host survival. Testing two candidate mechanisms of resistance and tolerance, skin sloughing and lesion reduction, respectively, we found limited support that either of these processes were strong mechanisms of host defence.Our study contributes to a broader understanding of resistance and tolerance in host–pathogen systems by showing that differences in host tolerance can significantly affect whether changes in resistance or tolerance have larger effects on disease outcomes, highlighting the need for species and even population‐specific management approaches that target host defence strategies. A free Plain Language Summary can be found within the Supporting Information of this article. [ABSTRACT FROM AUTHOR]

Microbiome–pathogen interactions are increasingly recognized as an important element of host immunity. While these host‐level interactions will have consequences for community disease dynamics, the factors which influence host microbiomes at larger scales are poorly understood. We here describe landscape‐scale pathogen–microbiome associations within the context of post‐epizootic amphibian chytridiomycosis, a disease caused by the panzootic chytrid fungus Batrachochytrium dendrobatidis. We undertook a survey of Neotropical amphibians across altitudinal gradients in Ecuador ~30 years following the observed amphibian declines and collected skin swab‐samples which were metabarcoded using both fungal (ITS‐2) and bacterial (r16S) amplicons. The data revealed marked variation in patterns of both B. dendrobatidis infection and microbiome structure that are associated with host life history. Stream breeding amphibians were most likely to be infected with B. dendrobatidis. This increased probability of infection was further associated with increased abundance and diversity of non‐Batrachochytrium chytrid fungi in the skin and environmental microbiome. We also show that increased alpha diversity and the relative abundance of fungi are lower in the skin microbiome of adult stream amphibians compared to adult pond‐breeding amphibians, an association not seen for bacteria. Finally, stream tadpoles exhibit lower proportions of predicted protective microbial taxa than pond tadpoles, suggesting reduced biotic resistance. Our analyses show that host breeding ecology strongly shapes pathogen–microbiome associations at a landscape scale, a trait that may influence resilience in the face of emerging infectious diseases. [ABSTRACT FROM AUTHOR]

Chytridiomycosis, caused by the fungus Batrachochytrium dendrobatidis (Bd), is a devastating infectious disease of amphibians. Retrospective studies using museum vouchers and genetic samples supported the hypothesis that Bd colonized Mexico from North America and then continued to spread into Central and South America, where it led to dramatic losses in tropical amphibian biodiversity (the epizootic wave hypothesis). While these studies suggest that Bd has been in Mexico since the 1970s, information regarding the historical and contemporary occurrence of different pathogen genetic lineages across the country is limited. In the current study, we investigated the historical and contemporary patterns of Bd in Mexico. We combined the swabbing of historical museum vouchers and sampling of wild amphibians with a custom Bd genotyping assay to assess the presence, prevalence, and genetic diversity of Bd over time in Mexico. We found Bd‐positive museum specimens from the late 1800s, far earlier than previous records and well before recent amphibian declines. With Bd genotypes from samples collected between 1975–2019, we observed a contemporary dominance of the global panzootic lineage in Mexico and report four genetic subpopulations and potential for admixture among these populations. The observed genetic variation did not have a clear geographic signature or provide clear support for the epizootic wave hypothesis. These results provide a framework for testing new questions regarding Bd invasions and their temporal relationship to observed amphibian declines in the Americas. [ABSTRACT FROM AUTHOR]

Emerging infectious diseases have caused many species declines, changes in communities and even extinctions. There are also many species that persist following devastating declines due to disease. The broad mechanisms that enable host persistence following declines include evolution of resistance or tolerance, changes in immunity and behaviour, compensatory recruitment, pathogen attenuation, environmental refugia, density‐dependent transmission and changes in community composition. Here we examine the case of chytridiomycosis, the most important wildlife disease of the past century. We review the full breadth of mechanisms allowing host persistence, and synthesise research on host, pathogen, environmental and community factors driving persistence following chytridiomycosis‐related declines and overview the current evidence and the information required to support each mechanism. We found that for most species the mechanisms facilitating persistence have not been identified. We illustrate how the mechanisms that drive long‐term host population dynamics determine the most effective conservation management strategies. Therefore, understanding mechanisms of host persistence is important because many species continue to be threatened by disease, some of which will require intervention. The conceptual framework we describe is broadly applicable to other novel disease systems. [ABSTRACT FROM AUTHOR]

While epizootics increasingly affect wildlife, it remains poorly understood how the environment shapes most host–pathogen systems. Here, we employ a three‐step framework to study microclimate influence on ectotherm host thermal behaviour, focusing on amphibian chytridiomycosis in fire salamanders (Salamandra salamandra) infected with the fungal pathogen Batrachochytrium salamandrivorans (Bsal). Laboratory trials reveal that innate variation in thermal preference, rather than behavioural fever, can inhibit infection and facilitate salamander recovery under humidity‐saturated conditions. Yet, a 3‐year field study and a mesocosm experiment close to the invasive Bsal range show that microclimate constraints suppress host thermal behaviour favourable to disease control. A final mechanistic model, that estimates range‐wide, year‐round host body temperature relative to microclimate, suggests that these constraints are rule rather than exception. Our results demonstrate how innate host defences against epizootics may remain constrained in the wild, which predisposes to range‐wide disease outbreaks and population declines. [ABSTRACT FROM AUTHOR]