14 results on '"Brook, Alan"'
Search Results
2. Integrating genealogy and dental variation: contributions to biological anthropology.
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Paul, Kathleen S., Feezell, Randall, Hughes, Toby, and Brook, Alan H.
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PHYSICAL anthropology ,BIOLOGICAL variation ,GENEALOGY ,TWINS ,ENVIRONMENTAL sciences ,DENTAL materials ,GESTATIONAL age - Abstract
Genealogical samples that couple dental data and documented relatedness information provide unique opportunities to examine the biological foundations of tooth variation. Over the past century, these resources have been critical for examining the various factors that influence dental phenotypes—the same traits that anthropologists regularly apply to reconstructions of past phenomena. Genealogical samples are uniquely suited to test long‐standing assumptions underlying bioanthropological practice, for example, biodistance and phylogenetic analysis, which commonly reference aspects of tooth size and form as proxies for latent genetic information. This article provides an overview of published genealogical research, with a focus on the practical implications of quantitative genetic and environmental studies of (non)human primate dentitions. To highlight the utility of genealogical samples for understanding the influence of specific non‐genetic factors on dental characters, we also present novel data on gestational hormone effects in opposite‐sex dizygotic twin pairs as a test of the twin testosterone transfer (TTT) hypothesis. This article discusses fruitful next steps in genealogical dental research, as well as important ethical considerations surrounding the use of associated datasets, which are sensitive in nature. As we forge ahead in an age of phenomics, genealogical samples are likely to play a key role in generating comprehensive genotype–phenotype maps of the dentition and in refining bioanthropological methods. [ABSTRACT FROM AUTHOR]
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- 2023
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3. Investigating the dentoalveolar complex in archaeological human skull specimens: Additional findings with large volume micro‐CT compared to standard methods.
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Gurr, Angela, Higgins, Denice, Henneberg, Maciej, Kumaratilake, Jaliya, O'Donnell, Matthew Brook, McKinnon, Meghan, Hall, Kelly A., and Brook, Alan Henry
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X-ray computed microtomography ,ARCHAEOLOGICAL human remains ,BONE health ,THREE-dimensional imaging ,DENTAL anthropology ,DATA visualization software ,SKULL - Abstract
Archaeological investigation of the dentoalveolar complex in situ within a human skull requires detailed measurements using non‐invasive techniques. Standard macroscopic and radiographic methods have limitations but large volume micro‐computed tomography (LV micro‐CT) scanning has the potential to acquire data at high resolution in microns. In this study, archaeological specimens are analyzed using three‐dimensional data visualization software from LV micro‐CT scans with the aims of (1) determining whether LV micro‐CT can act as a single technique to provide detailed analysis of the dentoalveolar complex and (2) how findings from the LV micro‐CT technique compare with standard methods. These aims are explored by measuring a range of human skull specimens from a rare archaeological sample requiring non‐invasive methods, for multiple dental and alveolar bone health categories. The LV micro‐CT technique was the only method to provide a full range of detailed measurements across all categories studied. A combination of macroscopic and radiographic techniques covered a number of categories, but the use of multiple methods was more time consuming, did not provide the same level of accuracy, and did not include all measurements. There were high levels of reproducibility for intra‐operator scoring and good inter‐operator agreement from four operators with one operator whose results were outliers. As a further investigation of the potential of the LV micro‐CT technique, an additional individual, a fragile, fragmented skull of an infant was studied. This investigation confirms the value of LV micro‐CT scanning as a non‐invasive, accurate, single technique for the extensive analysis of the dentoalveolar complex within archaeological skulls, which also allows the relationship of different tissues to be studied in situ. [ABSTRACT FROM AUTHOR]
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- 2023
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4. Patterns of heritability across the human diphyodont dental complex: Crown morphology of Australian twins and families.
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Paul, Kathleen S., Stojanowski, Christopher M., Hughes, Toby E., Brook, Alan H., and Townsend, Grant C.
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HERITABILITY ,QUANTITATIVE genetics ,DECIDUOUS teeth ,MICROEVOLUTION ,DENTAL casting - Abstract
Objectives: This study generates a series of narrow‐sense heritability estimates for crown morphology of the deciduous and permanent dentition with two overarching aims. The first is to test the hypothesis that deciduous teeth provide a more faithful reflection of genetic information than their permanent successors. The second is to use quantitative genetic methods to evaluate assumptions underlying common data collection and analysis practices in biodistance research. Materials and Methods: Dental morphology data were collected from longitudinal dental casts representing Australian twins and families using Arizona State Dental Anthropology System standards. Polygenic models and estimates of narrow‐sense heritability were generated using SOLAR v.8.1.1. Each model considered age, sex, and age/sex interaction as covariates. Results: Heritability estimates significantly differed from zero for the majority of morphological crown characters. Most estimates fell within the 0.4–0.8 range typically observed for crown morphology. Mean heritability was stable across the dental complex, but for paired homologues, permanent traits often yielded higher estimates than their deciduous counterparts. Results indicate directional asymmetry in environmental influence for crown morphology and inform biodistance "best practices" related to data collection and treatment. Conclusions: Overall, results for this sample support the use of crown morphology as a proxy for genetic variation in evolutionary research. This includes the deciduous dentition, which justifies the expansion of efforts to incorporate subadults into reconstructions of past microevolutionary processes. Results do not indicate that deciduous phenotypes more closely approximate underlying genotype, at least for deciduous/permanent homologues. [ABSTRACT FROM AUTHOR]
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- 2020
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5. Three-dimensional (3D) geometric morphometric analysis of human premolars to assess sexual dimorphism and biological ancestry in Australian populations.
- Author
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Yong, Robin, Ranjitkar, Sarbin, Lekkas, Dimitra, Halazonetis, Demetrios, Evans, Alistair, Brook, Alan, and Townsend, Grant
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BICUSPIDS ,MORPHOMETRICS ,DENTITION ,PHYSICAL anthropology ,DENTAL care - Abstract
Objectives: This study aimed to investigate size and shape variation of human premolars between Indigenous Australians and Australians of European ancestry, and to assess whether sex and ancestry could be differentiated between these groups using 3D geometric morphometrics. Materials and Methods: Seventy dental casts from each group, equally subdivided by sex, were scanned using a structured-light scanner. The 3D meshes of upper and lower premolars were processed using geometric morphometric methods. Seventy-two landmarks were recorded for upper premolars and 50 landmarks for lower premolars. For each tooth type, two-way ANOVA was used to assess group differences in centroid size. Shape variations were explored using principal component analysis and visualized using 3D morphing. Two-way Procrustes ANOVA was applied to test group differences for ancestry and sex, and a "leave-one-out" discriminant function was applied to assess group assignment. Results: Centroid size and shape did not display significant difference between the sexes. Centroid size was larger in Indigenous Australians for upper premolars and lower second premolars compared to the Australians of European ancestry. Significant shape variation was noted between the two ancestral groups for upper premolars and the lower first premolar. Correct group assignment of individual teeth to their ancestral groups ranged between 80.0 and 92.8% for upper premolars and 60.0 and 75.7% for lower premolars. Discussion: Our findings provide evidence of significant size and shape variation in human premolars between the two ancestral groups. High classification rates based on shape analysis of upper premolars highlight potential application of geometric morphometrics in anthropological, bioarcheological and forensic contexts. [ABSTRACT FROM AUTHOR]
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- 2018
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6. Hypoplastic enamel defects and environmental stress in a homogeneous Romano-British population.
- Author
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Brook, Alan H. and Smith, Joyce M.
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Brook AH, Smith JM. Hypoplastic enamel defects and environmental stress in a homogeneous Romano–British population. Eur J Oral Sci 2006; 114 (Suppl. 1): 370–374. © Eur J Oral Sci, 2006 --> This study investigated hypoplastic enamel defects in a well‐defined sample of Romano–Britons from the 3rd to the 5th century AD and compared the findings with a modern British sample investigated by the same authors. All 178 excavated skulls with intact dentitions were examined for hypoplastic defects using the Federation Dentaire International (FDI) Developmental Defects of Enamel Index criteria. Histopathological and microradiographic sections were prepared of 5 teeth. Hypoplastic defects were found in the teeth of 37% of skulls, with 25% having 4 or more teeth affected. The teeth most frequently involved were canines. Of the defects, 75% were horizontal grooves, 12.7% were pitting, and 7.1% were areas of missing enamel. The location of defects was 82% buccal, 16.5% lingual, and 1.2% occlusal. The reproducibility of diagnosis was 84%. Microscopic and microradiographic investigations showed areas of hypomineralization of enamel and wide zones of interglobular dentine related to the hypoplastic grooves. There was higher frequency, different morphology, and greater severity of hypoplastic enamel defects compared with the modern British sample. The defects may be related to repeated environmental stresses between the ages of 2 and 6 yr. Identified environmental stresses in these Romano–Britons, including high lead ingestion, poor nutrition, and recurrent infections, may be important etiological factors for the enamel defects. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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7. Comparison of methods for measurement of hypoplastic lesions.
- Author
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Elcock, Claire, Smith, Richard N., Simpson, Joanne, Abdellatif, Abeer, Bäckman, Birgitta, and Brook, Alan H.
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Elcock C, Smith RN, Simpson J, Abdellatif A, Bäckman B, Brook AH. Comparison of methods for measurement of hypoplastic lesions. Eur J Oral Sci 2006; 114 (Suppl. 1): 365–369 © Eur J Oral Sci, 2006 --> Enamel hypoplasia is a quantitative defect of enamel thickness. Methods previously used for its measurement have limitations in clinical studies. The aim of this study was to investigate new methods of measurement using image analysis. Lesions on 8 teeth affected by enamel hypoplasia were quantified from study models and impression surfaces using an image‐analysis system. The measurements made included lesion area and tooth surface area; from these the proportion of tooth surface area affected was calculated. For comparison, manual measurement was performed on impression surfaces and study models, using digital callipers. Images were also acquired of lesions on 12 exfoliated teeth, and the lesion area and total tooth area were calculated. For assessment of intra‐operator reliability, the +/– repeatability coefficient was calculated. Measurement of the surface of lesions direct from the exfoliated teeth gave the best results overall, followed by direct image analysis of the silicone impression. [ABSTRACT FROM AUTHOR]
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- 2006
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8. The new Enamel Defects Index: testing and expansion.
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Elcock, Claire, Lath, Darren Lee, Luty, Joanna D., Gallagher, Martin G., Abdellatif, A., Bäckman, Birgitta, and Brook, Alan H.
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Elcock C, Lath DL, Luty JD, Gallagher MG, Abdellatif A, Bäckman B, Brook AH. The new Enamel Defects Index: testing and expansion. Eur J Oral Sci 2006; 114 (Suppl. 1): 35–38 © Eur J Oral Sci, 2006 --> The Enamel Defects Index (EDI) was created based on three innovative principles: (i) a basic level of the three major categories of defects; (ii) more detailed subcategories of each major category; and (iii) each category scored independently as present [1] or absent [0], simplifying decision making. The aim of this investigation was to further test the index in a number of applications and to expand it to record defect subtype and treatment need. Testing was undertaken by operators with different levels of clinical experience. A computer‐assisted learning (CAL) package was developed for operator training and calibration. The index was also used on clinical photographs and high‐resolution digital images of exfoliated and extracted teeth. Scoring of photographs revealed substantial intra‐operator agreement. Training using the CAL package resulted in significant improvement in index use. Intra‐operator reproducibility was good to excellent, and interoperator reproducibility was good for buccal surfaces on digital images. Index expansion allowed information on defect subtype, location, and treatment need to be gathered readily. The EDI has high reproducibility and allows more rapid and accurate data collection from clinical and in vitro studies than the Fédération Dentaire Internationale Developmental Defects of Enamel index. [ABSTRACT FROM AUTHOR]
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- 2006
- Full Text
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9. A randomized controlled trial of outreach placement's effect on dental students' clinical confidence.
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Smith, Michael, Lennon, Michael A., Brook, Alan H., and Robinson, Peter G.
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DENTISTRY ,DENTAL students ,RANDOMIZED controlled trials ,DENTAL schools ,PRIMARY care - Abstract
This randomized controlled trial compared the effects of outreach placement with traditional, exclusively dental school-based clinical experience on students' confidence in providing treatment for patients presenting with common dental problems. Senior dental students (n=49) were allocated at random to existing dental school-based clinics or placement in primary care clinics to work supervised by local dentists. At baseline, students self-rated their global confidence on a five-point scale. These measures were repeated at follow-up, augmented by a transition judgment and a then-test of confidence (asking students to look back and re-rate their pre-placement confidence). Groups were comparable at baseline. Follow-up scores for global confidence were similar between groups. The outreach group scored higher in the transition judgment (mean 3.7, SD 0.9) than the control group (mean 3.1, SD 1.1, P=0.05). In the then-test, on reflection, the outreach group considered their baseline ratings of confidence were overoptimistic (mean then-test scores 3.2, SD 0.9 and baseline 3.7, SD 0.5) while the control group thought theirs were accurate (mean then-test scores 3.8, SD 0.7 and baseline 3.6, SD 0.8, P=0.01). The findings suggest dental outreach training in primary care settings is more effective than dental school training alone in improving students' confidence in tackling clinical situations. The measurement of change in confidence is complicated by shifts in students' internal scales arising from insights gained on outreach. [ABSTRACT FROM AUTHOR]
- Published
- 2006
10. DNA diagnosis of X-linked amelogenesis imperfecta (AIH1).
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Lench, Nicholas L., Brook, Alan H., Lench, N J, and Brook, A H
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DNA , *GENETIC mutation , *GENETIC polymorphisms , *NUCLEOTIDE sequence , *GENETIC disorder diagnosis , *GENETICS , *ALLELES , *CHROMOSOMES , *DENTAL enamel , *GENEALOGY , *GENES , *GENETIC techniques , *POLYMERASE chain reaction , *PROTEINS , *TEETH , *GENETIC carriers , *AMELOGENESIS imperfecta , *SEQUENCE analysis - Abstract
Mutations in the amelogenin gene, AMGX, are known to cause X-linked amelogenesis imperfecta (AIH1). We have used DNA single-strand conformational polymorphism analysis and DNA sequencing to diagnose this disorder unequivocally in two related boys aged 3 and 7 years, respectively, from a family in which an existing mutation in the amelogenin gene is segregating. [ABSTRACT FROM AUTHOR]
- Published
- 1997
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11. AQUATIC ANIMALS aren't HUNGRY IN WINTER, OR WHY <em>CYMBELLA</em> BLOOMS BENEATH THE ICE.
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Brook, Alan J.
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DIATOMS , *AQUATIC animals , *EPIPHYTES , *LARVAE , *FISHES - Abstract
The article presents information on the growth of Cymbella Sp. which is found growing beneath layers of ice. The reason for the winter growth of Cymbella is linked to aquatic fauna. The absence of active aquatic fauna, which at other seasons of the year browse down algal felts and in many instances keep submerged aquatic macrophytes virtually epiphyte free. Various experimental studies have demonstrated the extent insect larvae and fish can have on the epiphytic flora of various macrophytes. In many instances removal of the algal epiflora from such plants can be rapid and almost complete.
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- 1975
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12. THE DISCOLORATION OF ROOFS IN THE UNITED STATES AND CANADA BY ALGAE.
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Brook, Alan J.
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SHINGLES (Building materials) , *CYANOBACTERIA , *GREEN algae , *PHYTOPLANKTON - Abstract
Roof shingles are often colonized and discolored by blue-green and green algae. The former are mostly subaerial species and the latter are soil algae most frequently recovered from the atmosphere. [ABSTRACT FROM AUTHOR]
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- 1968
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13. A large X-chromosomal deletion is associated with microphthalmia with linear skin defects (MLS) and amelogenesis imperfecta (XAI).
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Hobson GM, Gibson CW, Aragon M, Yuan ZA, Davis-Williams A, Banser L, Kirkham J, and Brook AH
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- Adolescent, Bone Density genetics, Child, Child, Preschool, DNA Mutational Analysis, Dental Enamel pathology, Dental Enamel ultrastructure, Dentin metabolism, Female, Gene Dosage, Genetic Predisposition to Disease, Hardness, Humans, Skin Abnormalities genetics, X Chromosome Inactivation, Young Adult, Amelogenesis Imperfecta complications, Amelogenesis Imperfecta genetics, Chromosome Deletion, Chromosomes, Human, X genetics, Microphthalmos complications, Microphthalmos genetics, Skin Abnormalities complications
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A female patient is described with clinical symptoms of both microphthalmia with linear skin defects (MLS or MIDAS) and dental enamel defects, having an appearance compatible with X-linked amelogenesis imperfecta (XAI). Genomic DNA was purified from the patient's blood and semiquantitative multiplex PCR revealed a deletion encompassing the amelogenin gene (AMELX). Because MLS is also localized to Xp22, genomic DNA was subjected to array comparative genomic hybridization, and a large heterozygous deletion was identified. Histopathology of one primary and one permanent molar tooth showed abnormalities in the dental enamel layer, and a third tooth had unusually high microhardness measurements, possibly due to its ultrastructural anomalies as seen by scanning electron microscopy. This is the first report of a patient with both of these rare conditions, and the first description of the phenotype resulting from a deletion encompassing the entire AMELX gene. More than 50 additional genes were monosomic in this patient., (2009 Wiley-Liss, Inc.)
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- 2009
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14. Novel missense mutations and a 288-bp exonic insertion in PAX9 in families with autosomal dominant hypodontia.
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Das P, Hai M, Elcock C, Leal SM, Brown DT, Brook AH, and Patel PI
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- Amino Acid Sequence, Base Sequence, Female, Genes, Dominant, Genetic Linkage, Humans, Male, Molecular Sequence Data, PAX9 Transcription Factor, Pedigree, Anodontia genetics, DNA-Binding Proteins genetics, Mutation, Missense, Transcription Factors genetics
- Abstract
We describe the molecular analysis of three families with hypodontia involving primarily molar teeth and report two novel mutational mechanisms. Linkage analysis of two large families revealed that the hypodontia was linked to the PAX9 locus. These two families revealed missense mutations consisting of a glutamic acid substitution for lysine and a proline substitution for leucine within the paired domain of PAX9. A pair of identical twins affected with hypodontia in a third family demonstrated a 288-bp insertion within exon 2 that resulted in a putative frameshift mutation and a premature stop codon. The insertion was associated with the loss of 7-bp from exon 2. A block of 256-bp of sequence within the insertion was completely identical to downstream sequence from the second intron of the PAX9 gene. These studies extend the spectrum of mutations in PAX9 associated with hypodontia to include heretofore undescribed categories, including missense mutations., (Copyright 2003 Wiley-Liss, Inc.)
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- 2003
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