Search

First Aid Kits are collections of the most important medical equipment required for quick medical assistance. Similarly, enzyme kits can provide a proficient, ready‐ and easy‐to‐use collection of biocatalysts that can be applied with high reproducibility. In this article, we illustrate how kits of oxyfunctionalisation enzymes could operate as synthetic 'First Aid' for chemists working on complex natural product total synthesis in an early‐ or late‐stage fashion, as well as in lead diversification in drug discovery processes. We reason that enzyme kits could catalyse the integration of biocatalysis into (synthetic) organic chemistry and describe how we envision their future application. [ABSTRACT FROM AUTHOR]

Wir haben die P450‐Monooxygenase CYP107D1 (OleP) aus Streptomyces antibioticus für die stereo‐ und regioselektive 7β‐Hydroxylierung von Lithocholsäure (LCS) zur Herstellung von Ursodeoxycholsäure (UDCS) durch "Protein‐Engineering" angepasst. OleP wurde zuvor für die Hydroxylierung von Testosteron an der 7β‐Position beschrieben, hydroxyliert jedoch LCS ausschließlich an der 6β‐Position, wodurch Murideoxycholsäure (MDCS) gebildet wird. Struktur‐ und 3DM‐Analysen, sowie molekulare Modellierungen wurden verwendet, um die Aminosäurereste F84, S240 und V291 als spezifitätsbestimmend zu identifizieren. Durch einen Alaninscan wurde S240A als UDCS‐produzierende Variante identifiziert. Basierend auf den identifizierten Positionen wurde eine synthetische "small but smart" Bibliothek durch die Verwendung eines farbbasierten Assays auf UDCS Produktion getestet. Hier konnte eine beinahe perfekte regio‐ und stereoselektive Dreifachvariante (F84Q/S240A/V291G) identifiziert werden, die UDCS in einer 10‐fach höheren Menge produziert als die S240A Variante. Der hergestellte Biokatalysator eröffnet neue Möglichkeiten zur umweltfreundlichen Synthese von UDCS aus dem Abfallprodukt LCS. [ABSTRACT FROM AUTHOR]

We engineered the cytochrome P450 monooxygenase CYP107D1 (OleP) from Streptomyces antibioticus for the stereo‐ and regioselective 7β‐hydroxylation of lithocholic acid (LCA) to yield ursodeoxycholic acid (UDCA). OleP was previously shown to hydroxylate testosterone at the 7β‐position but LCA is exclusively hydroxylated at the 6β‐position, forming murideoxycholic acid (MDCA). Structural and 3DM analysis, and molecular docking were used to identify amino acid residues F84, S240, and V291 as specificity‐determining residues. Alanine scanning identified S240A as a UDCA‐producing variant. A synthetic "small but smart" library based on these positions was screened using a colorimetric assay for UDCA. We identified a nearly perfectly regio‐ and stereoselective triple mutant (F84Q/S240A/V291G) that produces 10‐fold higher levels of UDCA than the S240A variant. This biocatalyst opens up new possibilities for the environmentally friendly synthesis of UDCA from the biological waste product LCA. [ABSTRACT FROM AUTHOR]

Die enzymkatalysierte Funktionalisierung (engl.: late‐stage functionalization (LSF)), wie z. B. die Methylierung von Arzneimittelmolekülen und Leitstrukturen, ermöglicht den direkten Zugang zu wirksameren pharmazeutischen Wirkstoffen (API). S‐Adenosyl‐l‐Methionin‐abhängige Methyltransferasen (MTs) können eine Schlüsselrolle bei der Entwicklung neuer Wirkstoffe spielen, da sie die chemo‐ und regioselektive Methylierung von O‐, N‐, S‐ und C‐Atomen katalysieren und damit den herkömmlichen chemischen Wegen überlegen sind. Um geeignete MTs zu identifizieren, haben wir einen kontinuierlichen fluoreszenzbasierten Hochdurchsatzassay für SAM‐abhängige Methyltransferasen entwickelt, der das Screening unter Verwendung von E. coli Zelllysaten erleichtert. Dieser Assay besteht aus zwei enzymatischen Schritten für die Umwandlung von S‐Adenosyl‐l‐Homocystein zu H2S, was zu einer selektiven Fluoreszenzmessung durch Reduktion eines Azidocoumarin‐Sulfidsensors führt. Die Untersuchung von zwei O‐MTs und einer N‐MT bestätigte, dass dieser Assay für die Bestimmung der Methyltransferase‐Aktivität in E. coli Zelllysaten geeignet ist. [ABSTRACT FROM AUTHOR]

Enzyme‐catalyzed late‐stage functionalization (LSF), such as methylation of drug molecules and lead structures, enables direct access to more potent active pharmaceutical ingredients (API). S‐adenosyl‐l‐methionine‐dependent methyltransferases (MTs) can play a key role in the development of new APIs, as they catalyze the chemo‐ and regioselective methylation of O‐, N‐, S‐ and C‐atoms, being superior to traditional chemical routes. To identify suitable MTs, we developed a continuous fluorescence‐based, high‐throughput assay for SAM‐dependent methyltransferases, which facilitates screening using E. coli cell lysates. This assay involves two enzymatic steps for the conversion of S‐adenosyl‐l‐homocysteine into H2S to result in a selective fluorescence readout via reduction of an azidocoumarin sulfide probe. Investigation of two O‐MTs and an N‐MT confirmed that this assay is suitable for the determination of methyltransferase activity in E. coli cell lysates. [ABSTRACT FROM AUTHOR]

Biocatalysis, early-stage functionalisation, enzyme kits, late-stage functionalisation, lead diversification Cover Feature: Enzyme Kits to Facilitate the Integration of Biocatalysis into Organic Chemistry - First Aid for Synthetic Chemists (ChemCatChem 11/2022) Keywords: biocatalysis; early-stage functionalisation; enzyme kits; late-stage functionalisation; lead diversification EN biocatalysis early-stage functionalisation enzyme kits late-stage functionalisation lead diversification 1 1 1 06/10/22 20220608 NES 220608 B The Cover Feature b illustrates how enzyme kits function as proficient and readily available "First Aid" for synthetic chemists, to simplify syntheses of complex molecules complementary to conventional chemical methods. [Extracted from the article]

ABSTRACT: Since the detection of cell‐free DNA (cfDNA) in human plasma in 1948, it has been investigated as a non‐invasive screening tool for many diseases, especially solid tumours and foetal genetic abnormalities. However, to date our lack of knowledge regarding the origin and purpose of cfDNA in a physiological environment has limited its use to more obvious diagnostics, neglecting, for example, its potential utility in the identification of predisposition to disease, earlier detection of cancers, and lifestyle‐induced epigenetic changes. Moreover, the concept or mechanism of cfDNA could also have potential therapeutic uses such as in immuno‐ or gene therapy. This review presents an extensive compilation of the putative origins of cfDNA and then contrasts the contributions of cellular breakdown processes with active mechanisms for the release of cfDNA into the extracellular environment. The involvement of cfDNA derived from both cellular breakdown and active release in lateral information transfer is also discussed. We hope to encourage researchers to adopt a more holistic view of cfDNA research, taking into account all the biological pathways in which cfDNA is involved, and to give serious consideration to the integration of in vitro and in vivo research. We also wish to encourage researchers not to limit their focus to the apoptotic or necrotic fraction of cfDNA, but to investigate the intercellular messaging capabilities of the actively released fraction of cfDNA and to study the role of cfDNA in pathogenesis. [ABSTRACT FROM AUTHOR]

Enzymatischer Abbau und Recycling können die Umweltbelastung durch Plastik reduzieren. Trotz jahrzehntelanger Forschung wurde bisher nicht über Enzyme für die effiziente Hydrolyse von Polyurethanen berichtet. Während die Hydrolyse von Esterbindungen in Polyester‐Polyurethanen durch Cutinasen bekannt ist, blieben die Urethanbindungen in Polyether‐Polyurethanen für biokatalytische Hydrolyse bislang unzugänglich. Wir berichten hier über die Entdeckung von Urethanasen in einer Metagenombibliothek, erstellt aus einer Bodenprobe, welche Polyurethanabfall für viele Jahre ausgesetzt war. Wir demonstrieren weiterhin die Anwendung einer Urethanase in einem chemo‐enzymatischen Prozess zum Polyurethan‐Recycling. Diese Urethanase hydrolysiert niedermolekulare Dicarbamate, welche aus der chemischen Glykolyse von Polyether‐Polyurethanschaum entstehen, was diese Strategie breit anwendbar auf diverse Polyether‐Polyurethan Abfälle macht. [ABSTRACT FROM AUTHOR]

Enzymatic degradation and recycling can reduce the environmental impact of plastics. Despite decades of research, no enzymes for the efficient hydrolysis of polyurethanes have been reported. Whereas the hydrolysis of the ester bonds in polyester‐polyurethanes by cutinases is known, the urethane bonds in polyether‐polyurethanes have remained inaccessible to biocatalytic hydrolysis. Here we report the discovery of urethanases from a metagenome library constructed from soil that had been exposed to polyurethane waste for many years. We then demonstrate the use of a urethanase in a chemoenzymatic process for polyurethane foam recycling. The urethanase hydrolyses low molecular weight dicarbamates resulting from chemical glycolysis of polyether‐polyurethane foam, making this strategy broadly applicable to diverse polyether‐polyurethane wastes. [ABSTRACT FROM AUTHOR]

Polyethylene terephthalate (PET) is a mass‐produced petroleum‐based synthetic polymer. Enzymatic PET degradation using, for example, Ideonella sakaiensis PETase (IsPETase) can be a more environmentally friendly and energy‐saving alternative to the chemical recycling of PET. However, IsPETase is a mesophilic enzyme with an optimal reaction temperature lower than the glass transition temperature (Tg) of PET, where the amorphous polymers can be readily accessed for enzymatic breakdown. In this study, we used error‐prone PCR to generate a mutant library based on a thermostable triple mutant (TM) of IsPETase. The library was screened against the commercially available polyester‐polyurethane Impranil DLN W 50 for more thermostable IsPETase variants, yielding four variants with higher melting points. The most promising IsPETaseTMK95N/F201I variant had a 5.0°C higher melting point than IsPETaseTM. Although this variant showed a slightly lower activity on PET at lower incubation temperatures, its increased thermostability makes it a more active PET hydrolase at higher reaction temperatures up to 60°C. Several other variants were compared and combined with selected previously published IsPETase mutants in terms of thermostability and hydrolytic activity against PET nanoparticles and amorphous PET films. Our findings indicate that thermostability is one of the most important characteristics of an effective PET hydrolase. [ABSTRACT FROM AUTHOR]

Promiskuitive Acyltransferase‐Aktivität ist die Eigenschaft mancher Hydrolasen, in wässriger Lösung Acyltransfer statt Hydrolyse zu katalysieren. Niedrige Enantioselektivität bzw. Effizienz, signifikante Produkthydrolyse und das begrenzte Substratspektrum bekannter Acyltransferasen stellen erhebliche Nachteile für industrielle Anwendungen dar. Durch aktivitätsbasiertes Screening von Hydrolasen konnte die Carboxylesterase EstCE1 aus der Familie VIII als beispiellos effiziente Acyltransferase identifiziert werden. EstCE1 kann die irreversible Amidierung und Carbamoylierung von Aminen in Wasser katalysieren, wie hier am Beispiel der Synthese des Wirkstoffs Moclobemid gezeigt. Detaillierte Struktur‐Funktions‐Analysen basierend auf der hier gelösten Kristallstruktur von EstCE1 identifizierten ein Sequenz‐Motiv, das sich als bedeutsam für die promiskuitive Acyltransferase‐Aktivität herausstellte. Die Übertragung dieses Motivs führte zur Umwandlung einer "Hydrolase" in eine "Acyltransferase". [ABSTRACT FROM AUTHOR]

Promiscuous acyltransferase activity is the ability of certain hydrolases to preferentially catalyze acyl transfer over hydrolysis, even in bulk water. However, poor enantioselectivity, low transfer efficiency, significant product hydrolysis, and limited substrate scope represent considerable drawbacks for their application. By activity‐based screening of several hydrolases, we identified the family VIII carboxylesterase, EstCE1, as an unprecedentedly efficient acyltransferase. EstCE1 catalyzes the irreversible amidation and carbamoylation of amines in water, which enabled the synthesis of the drug moclobemide from methyl 4‐chlorobenzoate and 4‐(2‐aminoethyl)morpholine (ca. 20 % conversion). We solved the crystal structure of EstCE1 and detailed structure–function analysis revealed a three‐amino acid motif important for promiscuous acyltransferase activity. Introducing this motif into an esterase without acetyltransferase activity transformed a "hydrolase" into an "acyltransferase". [ABSTRACT FROM AUTHOR]

Biokatalytische Alkylierungen sind wichtige Reaktionen, um chemo‐, regio‐ und stereoselektiv alkylierte Verbindungen zu erhalten. Dies kann mit S‐Adenosyl‐l‐methionin (SAM)‐abhängigen Methyltransferasen und SAM‐Analoga erreicht werden. Kürzlich wurde gezeigt, dass eine Halogenid‐Methyltransferase (HMT) aus Chloracidobacterium thermophilum SAM ausgehend von SAH und Methyliodid herstellen kann. Wir entwickelten einen Iodid‐basierten Assay für die gerichtete Evolution einer HMT aus Arabidopsis thaliana und nutzten diesen, um eine V140T‐Variante zu identifizieren, die auch Ethyl‐, Propyl‐, und Allyliodid akzeptiert, um die entsprechenden SAM‐Analoga herzustellen (90, 50 und 70 % Umsatz ausgehend von 15 mg SAH). Die V140T‐AtHMT wurde in einer Eintopfkaskade mit O‐Methyltransferasen (IeOMT und COMT) eingesetzt, um die regioselektive Alkylierung von Luteolin und 3,4‐Dihydroxybenzaldehyd zu erzielen. Obwohl eine Kaskade zur Propylierung von 3,4‐Dihydroxybenzaldehyd niedrige Umsätze ergab, konnte das Propyl‐SAH‐Intermediat durch NMR‐Spektroskopie bestätigt werden. [ABSTRACT FROM AUTHOR]

Biocatalytic alkylations are important reactions to obtain chemo‐, regio‐ and stereoselectively alkylated compounds. This can be achieved using S‐adenosyl‐l‐methionine (SAM)‐dependent methyltransferases and SAM analogs. It was recently shown that a halide methyltransferase (HMT) from Chloracidobacterium thermophilum can synthesize SAM from SAH and methyl iodide. We developed an iodide‐based assay for the directed evolution of an HMT from Arabidopsis thaliana and used it to identify a V140T variant that can also accept ethyl‐, propyl‐, and allyl iodide to produce the corresponding SAM analogs (90, 50, and 70 % conversion of 15 mg SAH). The V140T AtHMT was used in one‐pot cascades with O‐methyltransferases (IeOMT or COMT) to achieve the regioselective ethylation of luteolin and allylation of 3,4‐dihydroxybenzaldehyde. While a cascade for the propylation of 3,4‐dihydroxybenzaldehyde gave low conversion, the propyl‐SAH intermediate could be confirmed by NMR spectroscopy. [ABSTRACT FROM AUTHOR]

Certain hydrolases preferentially catalyze acyl transfer over hydrolysis in an aqueous environment. However, the molecular and structural reasons for this phenomenon are still unclear. Herein, we provide evidence that acyltransferase activity in esterases highly correlates with the hydrophobicity of the substrate‐binding pocket. A hydrophobicity scoring system developed in this work allows accurate prediction of promiscuous acyltransferase activity solely from the amino acid sequence of the cap domain. This concept was experimentally verified by systematic investigation of several homologous esterases, leading to the discovery of five novel promiscuous acyltransferases. We also developed a simple yet versatile colorimetric assay for rapid characterization of novel acyltransferases. This study demonstrates that promiscuous acyltransferase activity is not as rare as previously thought and provides access to a vast number of novel acyltransferases with diverse substrate specificity and potential applications. [ABSTRACT FROM AUTHOR]

Certain hydrolases preferentially catalyze acyl transfer over hydrolysis in an aqueous environment. However, the molecular and structural reasons for this phenomenon are still unclear. Herein, we provide evidence that acyltransferase activity in esterases highly correlates with the hydrophobicity of the substrate‐binding pocket. A hydrophobicity scoring system developed in this work allows accurate prediction of promiscuous acyltransferase activity solely from the amino acid sequence of the cap domain. This concept was experimentally verified by systematic investigation of several homologous esterases, leading to the discovery of five novel promiscuous acyltransferases. We also developed a simple yet versatile colorimetric assay for rapid characterization of novel acyltransferases. This study demonstrates that promiscuous acyltransferase activity is not as rare as previously thought and provides access to a vast number of novel acyltransferases with diverse substrate specificity and potential applications. [ABSTRACT FROM AUTHOR]

Halide assays are important for the study of enzymatic dehalogenation, a topic of great industrial and scientific importance. Here we describe the development of a very sensitive halide assay that can detect less than a picomole of bromide ions, making it very useful for quantifying enzymatic dehalogenation products. Halides are oxidised under mild conditions using the vanadium‐dependent chloroperoxidase from Curvularia inaequalis, forming hypohalous acids that are detected using aminophenyl fluorescein. The assay is up to three orders of magnitude more sensitive than currently available alternatives, with detection limits of 20 nM for bromide and 1 μM for chloride and iodide. We demonstrate that the assay can be used to determine specific activities of dehalogenases and validate this by comparison to a well‐established GC‐MS method. This new assay will facilitate the identification and characterisation of novel dehalogenases and may also be of interest to those studying other halide‐producing enzymes. [ABSTRACT FROM AUTHOR]