242 results on '"Jones, E."'
Search Results
2. Projecting the suitability of global and local habitats for myrtle rust (Austropuccinia psidii) using model consensus.
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Narouei‐Khandan, H. A., Worner, S. P., Viljanen, S. L. H., Bruggen, A. H. C., and Jones, E. E.
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CORROSION & anti-corrosives ,HABITATS ,HIGH temperatures ,MODEL railroads ,STEEL corrosion - Abstract
Myrtle rust (caused by Austropuccinia psidii) affects more than 500 known host species in the Myrtaceae family. Three different modelling approaches (CLIMEX, MaxEnt and Multi‐Model Framework) were used to project the habitat suitability for myrtle rust at both global and local scales. Current data on the global occurrence of myrtle rust were collected from online literature and expert solicitation. Long‐term averages of climate data (1960–1990) were sourced from WorldClim and CliMond websites. Recent reports of myrtle rust in New Zealand were used for validation of model outputs but not in model training and testing. The model outputs were combined into a consensus model to identify localities projected to be suitable for myrtle rust according to two or three models (hotspots). In addition to the locations where the pathogen is currently present, all models successfully projected independent occurrence data in New Zealand suitable for establishment of the pathogen. Climate suitability for the pathogen was primarily related to temperature followed by rainfall in MaxEnt and the CLIMEX model. The results confirmed the optimum temperature range of this pathogen in the literature (15–25 °C). Additional analysis of the precipitation variables indicated that excessive rain (more than 2000 mm in warmest quarter of the year) combined with high temperatures (>30 °C) constrain pathogen establishment. The results of the current study can be useful for countries such as New Zealand, China, South Africa and Singapore where the pathogen has not fully spread or established. [ABSTRACT FROM AUTHOR]
- Published
- 2020
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3. Quality of care assessment for people with multimorbidity.
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Valderas, J. M., Gangannagaripalli, J., Nolte, E., Boyd, C. M., Roland, M., Sarria‐Santamera, A., Jones, E., Rijken, M., Boyd, C, and Sarria-Santamera, A
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MEDICAL quality control ,COMORBIDITY ,MONETARY incentives ,CARE of people ,HEALTH policy - Abstract
Multimorbidity, the simultaneous presence of multiple health conditions in an individual, is an increasingly common phenomenon globally. The systematic assessment of the quality of care delivered to people with multimorbidity will be key to informing the organization of services for meeting their complex needs. Yet, current assessments tend to focus on single conditions and do not capture the complex processes that are required for providing care for people with multimorbidity. We conducted a scoping review on quality of care and multimorbidity in selected databases in June 2018 and identified 87 documents as eligible for review, predominantly original research and reviews from North America, Europe and Australasia and mostly frequently related to primary care settings. We synthesized data qualitatively in terms of perceived challenges, evidence and proposed metrics. Findings reveal that the association between quality of care and multimorbidity is complex and depends on the conditions involved (quality appears to be higher for those with concordant conditions, and lower in the presence of discordant conditions) and the approach used for measuring quality (quality appears to be higher in people with multimorbidity when measured using condition/drug-specific process or intermediate outcome indicators, and worse when using patient-centred reports of experiences of care). People with discordant multimorbidity may be disadvantaged by current approaches to quality assessment, particularly when they are linked to financial incentives. A better understanding of models of care that best meet the needs of this group is needed for developing appropriate quality assessment frameworks. Capturing patient preferences and values and incorporate patients' voices in the form of patient-reported experiences and outcomes of care will be critical towards the achievement of high-performing health systems that are responsive to the needs of people with multimorbidity. [ABSTRACT FROM AUTHOR]
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- 2019
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4. Contingent Claims Analysis of Corporate Capital Structures: an Empirical Investigation.
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JONES, E. PHILIP, MASON, SCOTT P., and ROSENFELD, ERIC
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LEGAL claims ,CONTINGENT valuation ,CONTINGENT liabilities (Accounting) ,CAPITAL structure ,CORPORATE finance ,CORPORATE debt ,OPTIONS (Finance) ,BONDS (Finance) ,INTEREST rates ,MATHEMATICAL models of investments ,ECONOMIC models ,JUNK bonds - Abstract
In their seminal work Black and Scholes (1973) provide a significant insight which arguably is of more academic and practical value than their famous option pricing model. They demonstrate that corporate liabilities can be viewed as combinations of simple option contracts. This generalization of option pricing, as refined by Merton (1974, 1977), has become known as Contingent Claims Analysis (CCA). While CCA has subsequently been used by many researchers as a theoretical framework in which to view the pricing of corporate liabilities, its empirical validity remains an open question. Ingersoll (1976, 1977b) has tested the model's ability to predict prices for dual purpose funds and call policies for convertible bonds respectively. In a recent paper, JMR (1983), we tested CCA in one of its potentially most important applications, namely the valuation of debt in typical corporate capital structures. The objective of JMR (1983) was to test the predictive power of a prototypical model based on the usual set of assumptions in the CCA literature. The data base used in JMR (1983) was made up primarily of investment grade bonds, i.e. bond rating of BBB or higher. This paper extends that test of the prototypical model to a larger data base which includes a number of noninvestment grade, or “junk”, bonds. In addition, this paper demonstrates that in the multiple bond problem the value of callable debt need not be a monotonic function of firm value. [ABSTRACT FROM AUTHOR]
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- 1984
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5. Invasive melanoma in vivo can be distinguished from basal cell carcinoma, benign naevi and healthy skin by canine olfaction: a proof-of-principle study of differential volatile organic compound emission
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Willis, C. M., Britton, L. E., Swindells, M. A., Jones, E. M., Kemp, A. E., Muirhead, N. L., Gul, A., Matin, R. N., Knutsson, L., Ali, M., Willis, C. M., Britton, L. E., Swindells, M. A., Jones, E. M., Kemp, A. E., Muirhead, N. L., Gul, A., Matin, R. N., Knutsson, L., and Ali, M.
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Background Volatile organic compounds (VOCs) are continuously released by the body during normal metabolic processes, but their profiles change in the presence of cancer. Robust evidence that invasive melanoma in vivo emits a characteristic VOC signature is lacking. Objectives To conduct a canine olfactory, proof-of-principle study to investigate whether VOCs from invasive melanoma are distinguishable from those of basal cell carcinoma (BCC), benign naevi and healthy skin in vivo. Methods After a 13-month training period, the dogs ability to discriminate melanoma was evaluated in 20 double-blind tests, each requiring selection of one melanoma sample from nine controls (three each of BCC, naevi and healthy skin; all samples new to the dog). Results The dog correctly selected the melanoma sample on nine (45%) occasions (95% confidence interval 0.23-0.68) vs. 10% expected by chance alone. A one-sided exact binomial test gave a P-value of amp;lt;0.01, supporting the hypothesis that samples were not chosen at random but that some degree of VOC signal from the melanoma samples significantly increased the probability of their detection. Use of a discrete-choice model confirmed melanoma as the most influential of the recorded medical/personal covariates in determining the dogs choice of sample. Accuracy rates based on familiar samples during training were not a reliable indicator of the dogs ability to distinguish melanoma, when confronted with new, unknown samples. Conclusions Invasive melanoma in vivo releases odorous VOCs distinct from those of BCC, benign naevi and healthy skin, adding to the evidence that the volatile metabolome of melanoma contains diagnostically useful biomarkers., Funding Agencies|Amerderm Research Trust [1114684]
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- 2016
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6. A biomarker-based mathematical model to predict bone-forming potency of human synovial and periosteal mesenchymal stem cells
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De Bari, C, Dell'Accio, F, Karystinou, A, Guillot, P V, Fisk, N M, Jones, E A, McGonagle, D, Khan, I M, Archer, C W, Mitsiadis, T A, Donaldson, A N, Luyten, F P, Pitzalis, C, University of Zurich, and De Bari, C
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10182 Institute of Oral Biology ,2403 Immunology ,Rheumatology ,2745 Rheumatology ,Immunology ,2723 Immunology and Allergy ,2736 Pharmacology (medical) ,Immunology and Allergy ,610 Medicine & health ,Pharmacology (medical) - Published
- 2008
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7. P911: SYMPTOM BURDEN AND ITS IMPACT ON DAILY LIFE AMONG PATIENTS WITH IDIOPATHIC MULTICENTRIC CASTLEMAN DISEASE (IMCD) – FINDINGS FROM AN INTERNATIONAL IMCD PATIENT SURVEY.
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Shupo, F., Mason, N., Jones, E., Wayi‐Wayi, G., Repasky, M., Franklin, M., Brazier, J., Zibelnik, N., and Mukherjee, S.
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- 2022
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8. A TERMINATOR, A TRANSFORMER, AND JOB MEET: CREATOR-CREATED RELATIONS IN FILM AND SCRIPTURE.
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Jones, E. Allen
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SCIENCE fiction films , *ROBOTS in motion pictures , *PSEUDOSCIENCE , *SCIENCE fiction - Abstract
In this essay, I set the book of Job in dialogue with a number of films from the robot science fiction subgenre. It is my intention to show that both sets of literature are deeply engaged with questions related to how creators and created things can interact, and that they deal with these questions in ways that illuminate and complement each other. The study proceeds in three phases. First, I develop a typology of robot science fiction as I see it in Hollywood cinematic presentation. Second, I turn to unpack God's response to Job's complaint in Job 38. In this section, I focus particularly on God's self-description through constructive and parental metaphors. Finally, I suggest how reading these texts together can sharpen our understanding of the way in which the biblical narrative addresses relational dynamics between a creating God and humans as created beings. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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9. High genetic and virulence diversity detected in Neofusicoccum luteum and N. australe populations in New Zealand vineyards.
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Baskarathevan, J., Jones, E. E., Jaspers, M. V., and Ridgway, H. J.
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GRAPE diseases & pests , *MICROBIAL virulence genetics , *BOTRYOSPHAERIACEAE , *DIEBACK , *PLANT genetics , *VITIS vinifera , *VINEYARDS - Abstract
Genotypic and virulence diversity of Neofusicoccum luteum and N. australe isolates recovered from grapevines displaying symptoms of dieback and decline in New Zealand were investigated. The universally primed PCR ( UP- PCR) method was used to investigate the genetic diversity of 40 isolates of N. luteum and 33 isolates of N. australe. Five UP- PCR primers produced a total of 51 loci from N. luteum and 57 from N. australe with a greater number of polymorphic loci produced in N. australe (86%) compared with N. luteum (69%). Analysis of UP- PCR data showed both species found in New Zealand vineyards were genetically diverse at both the inter- and intra-vineyard levels with only a single pair of clonal isolates in N. luteum. Cluster analysis of UP- PCR data produced four genetic groups in N. luteum and 10 in N. australe ( P < 0.05). For both species, there was no relationship between the genetic groups and the origin of isolates. The mean genetic diversity ( H) of N. luteum was less than for N. australe, being 0.1791 and 0.2417, respectively. Pathogenicity assays of both species using isolates from either the same or different genetic groups inoculated onto either green shoots or grapevine trunks, showed virulence diversity within the population; however, no correlation was identified between genetic groups and virulence. [ABSTRACT FROM AUTHOR]
- Published
- 2017
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10. The Australian litigation landscape - oral and maxillofacial surgery and general dentistry (oral surgery procedures): an analysis of litigation cases.
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Badenoch‐Jones, EK, White, BP, Lynham, AJ, Badenoch-Jones, E K, White, B P, and Lynham, A J
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SURGERY ,MEDICINE ,TEETH ,MOUTH ,MAXILLOFACIAL surgery - Abstract
Background: There are persistent concerns about litigation in the dental and medical professions. These concerns arise in a setting where general dentists are more frequently undertaking a wider range of oral surgery procedures, potentially increasing legal risk.Methods: Judicial cases dealing with medical negligence in the fields of general dentistry (oral surgery procedure) and oral and maxillofacial surgery were located using the three main legal databases. Relevant cases were analysed to determine the procedures involved, the patients' claims of injury, findings of negligence and damages awarded. A thematic analysis of the cases was undertaken to determine trends.Results: Fifteen cases over a 20-year period were located across almost all Australian jurisdictions (eight cases involved general dentists; seven cases involved oral and maxillofacial surgeons). Eleven of the 15 cases involved determinations of whether or not the practitioner had failed in their duty of care; negligence was found in six cases. Eleven of the 15 cases related to molar extractions (eight specifically to third molar).Conclusions: Dental and medical practitioners wanting to manage legal risk should have regard to circumstances arising in judicial cases. Adequate warning of risks is critical, as is offering referral in appropriate cases. Preoperative radiographs, good medical records and processes to ensure appropriate follow-up are also important. [ABSTRACT FROM AUTHOR]- Published
- 2016
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11. Pre-infection processes of Botryosphaeriaceae spp.: adhesion of conidia to different substrata.
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Sammonds, J., Jaspers, M. V., and Jones, E. E.
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BOTRYOSPHAERIACEAE ,GRAPES ,BOTRYOSPHAERIA ,DIEBACK ,PLANT disease research - Abstract
Species of Botryosphaeriaceae are important wound pathogens of grapevines as causal agents of botryosphaeria dieback, but the behaviour of their conidia pre-infection is unknown and may be important for disease development. Adhesion properties of conidia were investigated for Botryosphaeria dothidea, Neofusicoccum luteum and N. parvum on substrata with different affinities for water. Greatest adhesion on any surface was reached after 5 min for isolates N. luteum MM558, B. dothidea 007 and N. parvum G652 (53·1, 54·0 and 50·6%, respectively) and for N. luteum isolate CC445 after 20 min (61·4%). As conidia adhered well to all artificial substrata, it appeared as if the attachment process was nonspecific. Overall, surface wettability did not play a major role in the adhesion of conidia. Spore surface proteins appeared to play a role in the adhesion process because treatment of conidia of N. luteum MM558 with a protease completely prevented adhesion. Histochemical labelling of conidia and germlings with Coomassie brilliant blue (specific for proteins) was positive for all isolates, with a blue 'halo' often seen surrounding conidia or near the germ tube emergence point after incubation times conducive to germination. Alcian blue also stained material surrounding conidia after longer incubation times, which indicated that mucopolysaccharide and protein production may be involved in a second phase of adhesion. [ABSTRACT FROM AUTHOR]
- Published
- 2016
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12. Consent for third molar tooth extractions in Australia and New Zealand: a review of current practice.
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Badenoch‐Jones, EK, Lynham, AJ, Loessner, D, Badenoch-Jones, E K, and Lynham, A J
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THIRD molar surgery ,INFORMED consent (Medical law) ,DENTAL extraction complications ,MAXILLOFACIAL surgery ,ALVEOLAR nerve ,PUBLIC health ,MEDICAL protocols ,QUESTIONNAIRES ,DENTAL extraction ,DISCLOSURE - Abstract
Background: Informed consent is the legal requirement to educate a patient about a proposed medical treatment or procedure so that he or she can make informed decisions. The purpose of the study was to examine the current practice for obtaining informed consent for third molar tooth extractions (wisdom teeth) by oral and maxillofacial surgeons in Australia and New Zealand.Methods: An online survey was sent to 180 consultant oral and maxillofacial surgeons in Australia and New Zealand. Surgeons were asked to answer (yes/no) whether they routinely warned of a specific risk of third molar tooth extraction in their written consent.Results: Seventy-one replies were received (39%). The only risks that surgeons agreed should be routinely included in written consent were a general warning of infection (not alveolar osteitis), inferior alveolar nerve damage (temporary and permanent) and lingual nerve damage (temporary and permanent).Conclusions: There is significant variability among Australian and New Zealand oral and maxillofacial surgeons regarding risk disclosure for third molar tooth extractions. We aim to improve consistency in consent for third molar extractions by developing an evidence-based consent form. [ABSTRACT FROM AUTHOR]- Published
- 2016
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13. Outcome in fetal lower urinary tract obstruction: a prospective registry study.
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Morris, R. K., Middleton, L. J., Malin, G. L., Quinlan‐Jones, E., Daniels, J., Khan, K. S., Deeks, J., and Kilby, M. D.
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COMPARATIVE studies ,FETAL diseases ,GESTATIONAL age ,LONGITUDINAL method ,RESEARCH methodology ,EVALUATION of medical care ,MEDICAL cooperation ,PREGNANCY ,PROGNOSIS ,RESEARCH ,URINARY organs ,LOGISTIC regression analysis ,EVALUATION research ,ACQUISITION of data ,URETHRAL obstruction ,THERAPEUTICS - Abstract
Objective: To describe influences on decision-making and prognostic variables in the prenatal management of fetal lower urinary tract obstruction (LUTO).Methods: This was a prospective registry study of pregnant women with a male fetus with LUTO from centers within the British Isles and The Netherlands. Women and/or their clinicians were given the treatment option of either conservative management or vesicoamniotic shunting (VAS). Baseline characteristics of women in the registry, reasons for entry to the registry and pregnancy outcomes were assessed. The main study outcomes were survival to 28 days after delivery, further survival to 2 years and renal function. Logistic regression analysis was used to examine prognostic variables that affected outcome. Results were compared with those of women in a randomized controlled trial (RCT) who were allocated randomly to a treatment option.Results: Forty-five women were registered, of whom 78% (35/45) underwent conservative management. Twenty-seven women entered the registry owing to their clinician's preference for management and 18 because of their own preference. Compared to the conservative-management group of the RCT, a higher proportion of women in the registry opting for conservative management had a normal amniotic fluid volume at diagnosis (P = 0.05) and a diagnosis of LUTO ≥ 24 weeks' gestation (P = 0.003). On multivariable logistic regression analysis, these variables showed a significant association with perinatal survival (P < 0.001). Survival to 28 days after delivery was higher in the conservative-management group, at 69% (24/35), compared to 40% (4/10) in the VAS group (P = 0.02) but this difference had limited statistical significance owing to small study size (relative risk, 0.58 (95% CI, 0.26-1.29); P = 0.14).Conclusion: In our prospective registry, the majority of fetuses with LUTO received conservative management, which was associated with better short- and long-term outcomes. A significant proportion of these pregnancies had normal amniotic fluid volume and a gestational age at diagnosis of ≥ 24 weeks, characteristics shown to be associated with improved survival. [ABSTRACT FROM AUTHOR]- Published
- 2015
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14. High genotypic and virulence diversity in Ilyonectria liriodendri isolates associated with black foot disease in New Zealand vineyards.
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Pathrose, B., Jones, E. E., Jaspers, M. V., and Ridgway, H. J.
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GRAPE diseases & pests , *VINEYARDS , *POLYMERASE chain reaction , *NUCLEOTIDE sequence , *PHYTOPATHOGENIC microorganisms , *GRAPE genetics - Abstract
A total of 57 Ilyonectria liriodendri isolates were identified by a combination of species-specific PCR and DNA sequencing from a collection of 174 Ilyonectria-like isolates recovered from 101 diseased grapevine samples. These samples were representative of the national vineyard, comprising material contributed by 49 grape growers across seven grape growing areas. This species was predominant, representing 33% of the recovered isolates, and has been reported as a major pathogen of grapevines in other countries. The genetic diversity of the 57 New Zealand isolates was compared to that of isolates from Australia and South Africa using universally primed polymerase chain reaction ( UP- PCR). A total of 66 informative loci distinguished 52 genotypes, of which five contained up to four clonal isolates. Four main clades were identified in a neighbour-joining ( NJ) tree. The international isolates (Australia and South Africa) were placed in a clade that did not include New Zealand isolates. There was a high level of intra- and inter-vineyard genetic variation indicating the free movement of isolates between regions. A subset of nine isolates from different branches of the NJ tree produced two vegetative compatibility groups and hyphal fusion was observed between non-self pairings. Pathogenicity tests using isolates from different genetic groups inoculated onto either detached roots or 1-year-old potted vines showed variability in virulence; however, no correlations were detected. [ABSTRACT FROM AUTHOR]
- Published
- 2014
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15. Virulence affected by assay parameters during grapevine pathogenicity studies with Botryosphaeriaceae nursery isolates.
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Billones‐Baaijens, R., Jones, E. E., Ridgway, H. J., and Jaspers, M. V.
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MICROBIAL virulence , *GRAPES , *BOTRYOSPHAERIACEAE , *PLANT shoots , *SAUVIGNON blanc , *PATHOGENIC microorganisms , *POLYMERASE chain reaction - Abstract
This study assessed the symptoms that developed when 114 Botryosphaeriaceae isolates from grapevine nursery plant materials were used to inoculate excised green shoots and 1-year-old rooted canes of Sauvignon blanc. The experiments showed that all isolates and species were able to produce lesions. Overall, the Neofusicoccum species were shown to be highly pathogenic in both tissue types while the Diplodia species were highly pathogenic on canes but not on green shoots. Isolates of the most prevalent species, N. luteum and N. parvum, showed varying lesion lengths on excised green shoots and canes. An evaluation of the factors associated with lengths of lesions showed that they were significantly affected by experimental batch which reflected inherent host and environmental factors over time. Reisolation from inoculated canes also indicated that most isolates of all species except D. seriata were able to spread internally beyond the lesions. Genetic variability analysis using UP- PCR showed that N. luteum isolates were genetically diverse but no association was observed between the phylogenetic group and degree of pathogenicity caused by the isolates. This study demonstrated that all Botryosphaeriaceae species from grapevine nurseries were pathogenic to grapevines and that the lesion lengths varied between species, among isolates within a species and among nursery sources, and was affected by the test method. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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16. Development of isolate-specific markers for Neofusicoccum parvum and N. luteum and their use to study rainwater splash dispersal in the vineyard.
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Baskarathevan, J., Jaspers, M. V., Jones, E. E., and Ridgway, H. J.
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POLYMERASE chain reaction ,RAINWATER ,VINEYARDS ,GRAPES ,ENDONUCLEASES ,BOTRYOSPHAERIACEAE ,CONIDIA ,DIEBACK - Abstract
Unique bands were identified in single isolates of Neofusicoccum parvum and Neofusicoccum luteum using universally primed polymerase chain reaction (UP-PCR) analysis of isolates obtained from grapevines and non-grapevine hosts in New Zealand, Australia, South Africa and the USA. Primers were designed to amplify a 1550 bp portion of the 1573 bp marker band from N. parvum isolate B2141 and a 510 bp portion of the 524 bp marker band from N. luteum isolate G51a2. A PCR-RFLP assay was developed to distinguish the N. parvum isolate B2141 from other N. parvum isolates, based on a polymorphism found in the marker band using the TaqI restriction endonuclease. For N. luteum isolate G51a2, the designed primers were specific at an annealing temperature of 63°C in the PCR. The sensitivity threshold of the N. parvum and N. luteum isolate-specific markers was 50 pg and 5 pg, respectively, when used in standard PCR with purified genomic DNA. The sensitivity of the N. parvum isolate-specific marker was increased to 0·5 pg by nested PCR. The specificity test of both isolate-specific markers with six other Botryosphaeriaceae spp. showed that they were specific to their respective species and isolates. Both markers were able to detect the conidia of N. parvum and N. luteum marker isolates in rainwater samples collected at different distances from an inoculation point in the vineyard. The results showed that rain splash could disperse the conidia of both of these species up to 2 m from the inoculum point in a single rainfall event. [ABSTRACT FROM AUTHOR]
- Published
- 2013
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17. Susceptibility of grapevine tissues to Neofusicoccum luteum conidial infection.
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Amponsah, N. T., Jones, E. E., Ridgway, H. J., and Jaspers, M. V.
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GRAPE diseases & pests , *PLANT cells & tissues , *FUNGAL diseases of plants , *FUNGICIDES - Abstract
This study investigated the ability of Neofusicoccum luteum to infect wounded shoots, trunks, pruned cane ends, leaf surfaces, buds, berries and roots, and its further progression into stem tissues. All tissue types were susceptible to infection except roots, with highest incidences in trunks (100%), cane ends (100%), shoots (92%) and buds (88%), indicating that in New Zealand, N. luteum is primarily a trunk and shoot pathogen. In trunks, there were no external symptoms, although N. luteum could be reisolated from 60 to 70 cm acropetally from the inoculation site after 4 months, by which time the pathogen had progressed into side shoots which became necrotic. Wounded and non-wounded buds became infected; most were killed, with basipetal progression of the pathogen into the supporting shoots. Berries wounded and inoculated at the pre-bunch closure stage were susceptible to N. luteum infection, with isolation incidence increasing over the season and peaking at harvest, when infected berries became mummified and produced pycnidia with many conidia. The pathogen was also able to progress from berries into bunch stems and supporting canes. Results from this research have indicated that N. luteum infection can occur in all aerial grapevine tissues and progress to young stem tissues where it causes wood necrosis. Growers should remove mummified berries from vineyard trash to ensure that pruning and trimming times do not coincide with rainy periods when conidia are released and dispersed. Furthermore, the susceptibility of buds to N. luteum infection indicates the need for fungicide sprays before budburst in spring. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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18. Explaining the Evolution of Poverty: The Case of Mozambique.
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Arndt, Channing, Hussain, M. Azhar, Jones, E. Samuel, Nhate, Virgulino, Tarp, Finn, and Thurlow, James
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POVERTY ,ECONOMIC development ,EQUALITY ,STATISTICAL matching - Abstract
We provide a comprehensive approach for analyzing the evolution of poverty using Mozambique as a case study. Bringing together data from disparate sources, we develop a novel “back-casting” framework that links a dynamic computable general equilibrium model to a micro-simulation poverty module. This framework provides a new approach to explaining and decomposing the evolution of poverty, as well as to examining rigorously the coherence between poverty, economic growth, and inequality outcomes. Finally, various simple but useful and rarely-applied approaches to considering regional changes in poverty rates are presented. [ABSTRACT FROM AUTHOR]
- Published
- 2012
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19. Detection of botryosphaeriaceous species in environmental samples using a multi-species primer pair.
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Ridgway, H. J., Amponsah, N. T., Brown, D. S., Baskarathevan, J., Jones, E. E., and Jaspers, M. V.
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BOTRYOSPHAERIACEAE ,GRAPE diseases & pests ,DETECTION of phytopathogenic microorganisms ,VINEYARDS ,DNA primers - Abstract
Botryosphaeriaceous species are significant grapevine trunk pathogens worldwide, which can be difficult to identify to species level using conventional morphological methods. This study developed and optimized a quick, reliable molecular identification method that could facilitate investigations into the epidemiology of these diseases in vineyards. The multi-species primers, BOT100F and BOT472R, amplified a 371-372 bp portion of the rRNA gene region from the six botryosphaeriaceous species commonly found in New Zealand vineyards. In silico analysis indicated that they would amplify DNA from six of the 12 lineages of the Botryosphaeriaceae, including all of the main species pathogenic to grapevines. A detection sensitivity of 1 and 0·1 pg DNA in standard and nested PCR, respectively, was achieved and this was calculated as equivalent to 2·5 conidia. Validation of the primers for environmental samples showed that their specificity was not compromized by the presence of competing DNA templates extracted from wood and soil. Single stranded conformational polymorphism (SSCP) analysis of the amplicons could resolve Neofusicoccum australe, N. luteum, Diplodia mutila and D. seriata, but did not differentiate between N. parvum and N. ribis. The optimized PCR-SSCP was used to identify botryosphaeriaceous species present in rainwater traps collected over 1 year in a vineyard known to contain infected vines. It could detect multiple species in individual samples and demonstrated differences in the dispersal patterns of conidia from different species. Given the specificity and sensitivity of this method it could prove useful in epidemiology studies involving the numerous botryosphaeriaceous species that infect a wide range of host species. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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20. hERG subunit composition determines differential drug sensitivity.
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Abi-Gerges, N, Holkham, H, Jones, EMC, Pollard, CE, Valentin, J-P, Robertson, GA, Jones, E M C, Pollard, C E, and Robertson, G A
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DRUG side effects ,MEDICATION safety ,RISK assessment ,GENES ,FLUOXETINE ,DOFETILIDE ,LONG QT syndrome ,ELECTROPHYSIOLOGY - Abstract
Background and Purpose: The majority of human ether-a-go-go-related gene (hERG) screens aiming to minimize the risk of drug-induced long QT syndrome have been conducted using heterologous systems expressing the hERG 1a subunit, although both hERG 1a and 1b subunits contribute to the K+ channels producing the repolarizing current I(Kr) . We tested a range of compounds selected for their diversity to determine whether hERG 1a and 1a/1b channels exhibit different sensitivities that may influence safety margins or contribute to a stratified risk analysis.Experimental Approach: We used the IonWorks™ plate-based electrophysiology device to compare sensitivity of hERG 1a and 1a/1b channels stably expressed in HEK293 cells to 50 compounds previously shown to target hERG channels. Potency was determined as IC₅₀ values (µM) obtained from non-cumulative, eight-point concentration-effect curves of normalized data, fitted to the Hill equation. To minimize possible sources of variability, compound potency was assessed using test plates arranged in alternating columns of cells expressing hERG 1a and 1a/1b.Key Results: Although the potency of most compounds was similar for the two targets, some surprising differences were observed. Fluoxetine (Prozac) was more potent at blocking hERG 1a/1b than 1a channels, yielding a corresponding reduction in the safety margin. In contrast, E-4031 was a more potent blocker of hERG 1a compared with 1a/1b channels, as previously reported, as was dofetilide, another high-affinity blocker.Conclusions and Implications: The current assays may underestimate the risk of some drugs to cause torsades de pointes arrhythmia, and overestimate the risk of others. [ABSTRACT FROM AUTHOR]- Published
- 2011
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21. Effects of temperature, inoculum concentration, leaf age, and continuous and interrupted wetness on infection of olive plants by Spilocaea oleagina.
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Obanor, F. O., Walter, M., Jones, E. E., and Jaspers, M. V.
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LEAF diseases & pests ,OLIVE ,PLANT diseases ,POLYNOMIALS ,HUMIDITY - Abstract
Experiments were conducted on olive plants in controlled environments to determine the effect of conidial concentration, leaf age, temperature, continuous and interrupted leaf wetness periods, and relative humidity (RH) during the drier periods that interrupted wet periods, on olive leaf spot (OLS) severity. As inoculum concentration increased from 1·0 × 10 to 2·5 × 10 conidia mL, the severity of OLS increased at all five temperatures (5, 10, 15, 20 and 25°C). A simple polynomial model satisfactorily described the relationship between the inoculum concentration at the upper asymptote (maximum number of lesions) and temperature. The results showed that for the three leaf age groups tested (2-4, 6-8 and 10-12 weeks old) OLS severity decreased significantly ( P < 0·001) with increasing leaf age at the time of inoculation. Overall, temperature also affected ( P < 0·001) OLS severity, with the lesion numbers increasing gradually from 5°C to a maximum at 15°C, and then declining to a minimum at 25°C. When nine leaf wetness periods (0, 6, 12, 18, 24, 36, 48, 72 and 96 h) were tested at the same temperatures, the numbers of lesions increased with increasing leaf wetness period at all temperatures tested. The minimum leaf wetness periods for infection at 5, 10, 15, 20 and 25°C were 18, 12, 12, 12 and 24 h, respectively. The wet periods during early infection processes were interrupted with drying periods (0, 3, 6, 12, 18 and 24 h) at two levels of RH (70 and 100%). The length of drying period had a significant ( P < 0·001) effect on disease severity, the effect depending on the RH during the interruption. High RH (100%) resulted in greater disease severity than low RH (70%). A polynomial equation with linear and quadratic terms of temperature, wetness and leaf age was developed to describe the effects of temperature, wetness and leaf age on OLS infection, which could be incorporated as a forecasting component of an integrated system for the control of OLS. [ABSTRACT FROM AUTHOR]
- Published
- 2011
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22. Large-scale extraction and characterization of CD271+ multipotential stromal cells from trabecular bone in health and osteoarthritis: implications for bone regeneration strategies based on uncultured or minimally cultured multipotential stromal cells.
- Author
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Jones, E, English, A, Churchman, S M, Kouroupis, D, Boxall, S A, Kinsey, S, Giannoudis, P G, Emery, P, and McGonagle, D
- Abstract
OBJECTIVE: To test the hypothesis that CD45(low)CD271+ bone marrow multipotential stromal cells (MSCs) are abundant in the trabecular bone niche and to explore their functional 'fitness' in health and osteoarthritis (OA). METHODS: Following enzymatic extraction, MSC release was evaluated using colony-forming unit-fibroblast (CFU-F) and colony-forming unit-osteoblast assays, flow cytometry, and confocal microscopy. CD45(low)CD271+ cells isolated by fluorescence-activated cell sorting were enumerated and expanded under standard and clonal conditions. Their proliferative and osteogenic potencies were assessed in relation to donor age and compared with those of aspirated CD45(low)CD271+ cells. In vitro and in vivo MSC 'aging' was measured using quantitative polymerase chain reaction-based telomere length analysis, and standard differentiation assays were utilized to demonstrate multipotentiality. RESULTS: Cellular isolates from trabecular bone cavities contained approximately 65-fold more CD45(low)CD271+ cells compared with aspirates (P < 0.0001) (median 1.89% [n = 39] and 0.029% [n = 46], respectively), concordant with increased CFU-F release. Aspirated and enzymatically released CD45(low)CD271+ cells had identical MSC phenotypes (approximately 100% CD73+CD105+CD13+, approximately 50-60% CD146+CD106+CD166+) and contained large proportions of highly clonogenic multipotential cells. In vitro osteogenic potency of freshly isolated CD45(low)CD271+ cells was comparable with, and often above, that of early-passage MSCs (8-14%). Their frequency and in vivo telomere status in OA bone were similar to those in bone from age-matched controls. CONCLUSION: Our findings show that CD45(low)CD271+ MSCs are abundant in the trabecular bone cavity and indistinguishable from aspirated CD45(low)CD271+ MSCs. In OA they display aging-related loss of proliferation but no gross osteogenic abnormality. These findings offer new opportunities for direct study of MSCs in musculoskeletal diseases without the requirement for culture expansion. They are also relevant for direct therapeutic exploitation of prospectively isolated, minimally cultured MSCs in trauma and OA. [ABSTRACT FROM AUTHOR]
- Published
- 2010
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23. Large-Scale Extraction and Characterization of CD271 + Multipotential Stromal Cells From Trabecular Bone in Health and Osteoarthritis.
- Author
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Jones, E., English, A., Churchman, S. M., Kouroupis, D., Boxall, S. A., Kinsey, S., Giannoudis, P. G., Emery, P., and McGonagle, D.
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BONE marrow cells ,PHYSICAL fitness research ,OSTEOARTHRITIS ,BONES ,CELLS - Abstract
The article presents a study which examined the abundance of CD271+ bone marrow multipotential stromal cells (MSCs) in the trabecular bone and their role in physical fitness and osteoarthritis. According to the authors, cellular isolates from trabecular bone cavity showed about 65-fold more CD271+ cells compared with aspirates and their osteogenic potency was similar with early passage MSCs. They add that CD271+ cells exhibited aging-related loss of proliferation but lack of gross osteogenic abnormality.
- Published
- 2010
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24. Validating Injection Stretch-Blow Molding Simulation Through Free Blow Trials.
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Menary, G. H., Tan, C. W., Armstrong, C. G., Salomeia, Y., Picard, M., Billon, N., and Harkin-Jones, E. M. A.
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CHEMICAL molding ,FINITE element method ,SIMULATION methods & models ,POLYMERS ,CHEMICAL engineering - Abstract
The article discusses a study on the inflation preform in free air with the use of a modeling and experimental or free blow approach. The free blow experiments were done on an instrumented prototype with marked preforms according to protocols as defined in previous studies. Two-dimensional free blow and free stretch-blow simulations were developed with the use of commercial finite element package. It concludes that free blow trials can be used for validating an injection stretch-blow molding (ISBM) process simulation.
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- 2010
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25. Stimulation of angiotensin AT2 receptors by the non-peptide agonist, Compound 21, evokes vasodepressor effects in conscious spontaneously hypertensive rats.
- Author
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Bosnyak, S, Welungoda, IK, Hallberg, A, Alterman, M, Widdop, RE, Jones, ES, Welungoda, I K, Widdop, R E, and Jones, E S
- Subjects
ANGIOTENSINS ,HORMONE receptors ,LABORATORY rats ,BLOOD vessels ,DRUG dosage ,REGULATION of blood pressure ,CANDESARTAN - Abstract
Background and Purpose: Angiotensin type 2 receptor (AT(2) receptor) stimulation evokes vasodilator effects in vitro and in vivo that oppose the vasoconstrictor effects of angiotensin type 1 receptors (AT(1) receptors). Recently, a novel non-peptide AT(2) receptor agonist, Compound 21, was described, which exhibited high AT(2) receptor selectivity.Experimental Approach: Functional cardiovascular effects of the drug candidate Compound 21 were assessed, using mouse isolated aorta and rat mesenteric arteries in vitro and in conscious spontaneously hypertensive rats (SHR).Key Results: Compound 21 evoked dose-dependent vasorelaxations in aortic and mesenteric vessels, abolished by the AT(2) receptor antagonist, PD123319. In vivo, Compound 21 administered alone, at doses ranging from 50 to 1000 ng.kg(-1).min(-1) over 4 h did not decrease blood pressure in conscious normotensive Wistar-Kyoto rats or SHR. However, when given in combination with the AT(1) receptor antagonist, candesartan, Compound 21 (300 ng.kg(-1).min(-1)) lowered blood pressure in SHR only. Further analysis in separate groups of conscious SHR revealed that, at a sixfold lower dose, Compound 21 (50 ng.kg(-1).min(-1)) still evoked a significant depressor response in adult SHR ( approximately 30 mmHg) when combined with different doses of candesartan (0.01 or 0.1 mg.kg(-1)). Moreover, the Compound 21-evoked depressor effect was abolished when co-infused (50 microg.kg(-1).min(-1) for 2 h) with the AT(2) receptor antagonist PD123319.Conclusion and Implications: Collectively, our results indicate that acute administration of Compound 21 evoked blood pressure reductions via AT(2) receptor stimulation. Thus Compound 21 can be considered an excellent drug candidate for further study of AT(2) receptor function in cardiovascular disease. [ABSTRACT FROM AUTHOR]- Published
- 2010
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26. Rotational Molding Cycle Time Reduction Using a Combination of Physical Techniques.
- Author
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Abdullah, M. Z., Bickerton, S., Bhattacharyya, D., Crawford, R. J., and Harkin-Jones, E.
- Subjects
ROTATIONAL molding of plastics ,MECHANICAL behavior of materials ,MOLDING of plastics ,PLASTIC molds ,CHEMICAL molding equipment - Abstract
The article examines potential benefits of a combination of physical techniques for reducing cycle times of rotational molding of plastics. It says cycle time reduction and significant improvements in mechanical properties of the parts being molded can be achieved by applying mold pressurization. Also discussed are the effects of various combinations of such technologies. The apparatus and procedures used in the experiments aimed at exploring the additional benefits of the techniques are described, including a rotational molding machine.
- Published
- 2009
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27. Systematic review: hepatitis-associated aplastic anaemia – a syndrome associated with abnormal immunological function.
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GONZALEZ‐CASAS, R., GARCIA‐BUEY, L., JONES, E. A., GISBERT, J. P., and MORENO‐OTERO, R.
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SYSTEMATIC reviews ,ANEMIA diagnosis ,IMMUNOLOGICAL adjuvants ,CELLULAR therapy ,CELL transplantation ,IMMUNOLOGIC diseases - Abstract
Background Hepatitis-associated aplastic anaemia is a syndrome in which marrow failure follows the development of hepatitis. Aim To review systematically the aetiology, immunopathogenesis, clinical presentation, diagnosis and treatment of hepatitis-associated aplastic anaemia. Methods Literature searches were undertaken on the MEDLINE electronic database up to December 2008. Twenty-four relevant studies were identified. The clinical and laboratory characteristics of the patients were analysed and reviewed. Results Hepatitis-associated aplastic anemia is a variant of acquired aplastic anemia in which an episode of hepatitis precedes the onset of aplastic anemia. The hepatitis may be acute and severe, even fulminant; it may be self-limiting or chronic. The pathology is often not attributable to a recognized cause of viral hepatitis. The syndrome occurs in 28 percent of young adults after liver transplantation for non-A, non-B, non-C hepatitis. Several features of the syndrome suggest that the marrow aplasia is mediated by immunological mechanisms, possibly mediated by gamma interferon or the cytokine cascade. Survival of patients treated with hematopoietic cell transplantation has been 82%, and the response rate to immunosuppressive therapy 70%. Conclusions Hepatitis-associated bone marrow aplasia is mediated by immunological mechanisms. Treatment options include hematopoietic cell transplantation and immunosuppressive therapy. [ABSTRACT FROM AUTHOR]
- Published
- 2009
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28. Cultured CD4T cells and primary human lymphocytes express hOATPs: intracellular accumulation of saquinavir and lopinavir.
- Author
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Janneh, O., Hartkoorn, R. C., Jones, E., Owen, A., Ward, S. A., Davey, R., Back, D. J., and Khoo, S. H.
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HIV ,LYMPHOCYTES ,CLINICAL drug trials ,PROTEASE inhibitors ,PHARMACOLOGY education ,POLYPEPTIDES - Abstract
Background and Purpose: Drug efflux tranporters (P-glycoprotein (P-gp), multidrug resistance-associated protein (MRP)) limit the cellular uptake of human immunodeficiency virus protease inhibitors but the contribution of influx transporters in cells that (over)express P-gp or MRP is less clear. Here, we studied the expression of one influx transporter system, human organic anion-transporting polypeptide (hOATP), in some T-cell lines (CEM, CEM(VBL), CEM(E1000)) and in peripheral blood mononuclear cells (PBMCs) and examined the effects of manipulation of influx/efflux transporters on the uptake of saquinavir and lopinavir.Experimental Approach: The expression of hOATPs was studied by PCR. We used hOATP substrate or inhibitor (estrone-3-sulphate (E-3-S) or montelukast, respectively) and inhibitors of P-gp (XR9576) and MRP (MK571 and frusemide) to study functional interactions between influx and efflux transporters in the uptake of saquinavir and lopinavir. Lipophilicity of the drugs was measured by octanol/saline partition coefficient.Key Results: CEM cells, their variants and PBMCs express various hOATP isoforms, with OATP3A1 detected in all of the cells. MK571, XR9576 and frusemide increased the uptake of saquinavir and lopinavir. E-3-S and montelukast reduced the uptake of saquinavir and lopinavir in some, but not all, of the cells. Pretreatment of the cells with MK571, XR9576 or frusemide, followed by E-3-S co-incubation reduced the cellular accumulation of saquinavir and lopinavir. Lopinavir is much more lipophilic than saquinavir.Conclusions and Implications: Human OATPs, MRP, P-gp and lipophilicity determine the cellular uptake and retention of saquinavir and lopinavir. These data may have important implications for drug-drug interactions, drug safety and efficacy. [ABSTRACT FROM AUTHOR]- Published
- 2008
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29. Protein tyrosine phosphatases: structure–function relationships.
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Tabernero, Lydia, Aricescu, A. Radu, Jones, E. Yvonne, and Szedlacsek, Stefan E.
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PROTEINS ,PROTEIN-tyrosine phosphatase ,ENZYMES ,CRYSTALLOGRAPHY ,NUCLEAR magnetic resonance ,LIGANDS (Biochemistry) - Abstract
Structural analysis of protein tyrosine phosphatases (PTPs) has expanded considerably in the last several years, producing more than 200 structures in this class of enzymes (from 35 different proteins and their complexes with ligands). The small–medium size of the catalytic domain of ∼280 residues plus a very compact fold makes it amenable to cloning and overexpression in bacterial systems thus facilitating crystallographic analysis. The low molecular weight PTPs being even smaller, ∼150 residues, are also perfect targets for NMR analysis. The availability of different structures and complexes of PTPs with substrates and inhibitors has provided a wealth of information with profound effects in the way we understand their biological functions. Developments in mammalian expression technology recently led to the first crystal structure of a receptor-like PTP extracellular region. Altogether, the PTP structural work significantly advanced our knowledge regarding the architecture, regulation and substrate specificity of these enzymes. In this review, we compile the most prominent structural traits that characterize PTPs and their complexes with ligands. We discuss how the data can be used to design further functional experiments and as a basis for drug design given that many PTPs are now considered strategic therapeutic targets for human diseases such as diabetes and cancer. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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30. Transient elastography to assess hepatic fibrosis in primary biliary cirrhosis.
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GÓMEZ‐DOMINGUEZ, E., MENDOZA, J., GARCÍA‐BUEY, L., TRAPERO, M., GISBERT, J. P., JONES, E. A., and MORENO‐OTERO, R.
- Subjects
FIBROSIS ,CIRRHOSIS of the liver ,LIVER diseases ,GASTROENTEROLOGY ,INTERNAL medicine - Abstract
Background Liver stiffness measurements may have potential for detecting and monitoring hepatic fibrosis in chronic liver disease. Aim To study the detection, quantification and progression of hepatic fibrosis in primary biliary cirrhosis by liver stiffness measurements. Methods Liver stiffness measurements were generated in 80 patients with primary biliary cirrhosis by applying transient elastography; however, as there were 55 with liver biopsy, histological stage (METAVIR) and liver stiffness measurements were compared only in these 55 patients. The efficiency of liver stiffness measurements in predicting stage of fibrosis was determined from the area under receiver operating characteristics curve analysis. Results Of the 80 patients included, 91, 4% were women and their mean age was 56 ± 12 (s.d.) years. A significant correlation was found ( P < 0.05) between histological fibrosis stage (METAVIR) and liver stiffness measurements. The values obtained from area under receiver operating characteristic curve analysis of liver stiffness measurement data were 0.89 for F > 2 and 0.96 for F = 4. Liver stiffness measurements were 9.0 ± 5.3 and 7.9 ± 6.0 kPa for patients followed up more than 5 years and less than 5 years, respectively ( P > 0.05). Conclusions In patients with primary biliary cirrhosis, median values of liver stiffness measurements correlated with histological severity of hepatic fibrosis. Liver stiffness measurements appear to be promising for liver fibrosis detection and quantification, as well as monitoring its progression, in patients with primary biliary cirrhosis. The progression rate of hepatic fibrosis in our primary biliary cirrhosis patients appears to be slow. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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31. Structure and functional analysis of the IGF-II/IGF2R interaction.
- Author
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Brown, James, Delaine, Carlie, Zaccheo, Oliver J., Siebold, Christian, Gilbert, Robert J., van Boxel, Gijs, Denley, Adam, Wallace, John C., Hassan, A. Bassim, Forbes, Briony E., and Jones, E. Yvonne
- Subjects
TUMORS ,HYPOGLYCEMIC agents ,GROWTH factors ,CYTOKINES ,GENETIC mutation ,TERATOGENESIS - Abstract
Embryonic development and normal growth require exquisite control of insulin-like growth factors (IGFs). In mammals the extracellular region of the cation-independent mannose-6-phosphate receptor has gained an IGF-II-binding function and is termed type II IGF receptor (IGF2R). IGF2R sequesters IGF-II; imbalances occur in cancers and IGF2R is implicated in tumour suppression. We report crystal structures of IGF2R domains 11–12, 11–12–13–14 and domains 11–12–13/IGF-II complex. A distinctive juxtaposition of these domains provides the IGF-II-binding unit, with domain 11 directly interacting with IGF-II and domain 13 modulating binding site flexibility. Our complex shows that Phe19 and Leu53 of IGF-II lock into a hydrophobic pocket unique to domain 11 of mammalian IGF2Rs. Mutagenesis analyses confirm this IGF-II ‘binding-hotspot’, revealing that IGF-binding proteins and IGF2R have converged on the same high-affinity site. [ABSTRACT FROM AUTHOR]
- Published
- 2008
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32. Structure of the fungal β-glucan-binding immune receptor dectin-1: Implications for function.
- Author
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Brown, James, O'Callaghan, Chris A., Marshall, Andrew S.J., Gilbert, Robert J.C., Siebold, Christian, Gordon, Siamon, Brown, Gordon D., and Jones, E. Yvonne
- Abstract
The murine molecule dectin-1 (known as the β-glucan receptor in humans) is an immune cell surface receptor implicated in the immunological defense against fungal pathogens. Sequence analysis has indicated that the dectin-1 extracellular domain is a C-type lectin-like domain, and functional studies have established that it binds fungal β-glucans. We report several dectin-1 crystal structures, including a high-resolution structure and a 2.8 Å resolution structure in which a short soaked natural β-glucan is trapped in the crystal lattice. In vitro characterization of dectin-1 in the presence of its natural ligand indicates higher-order complex formation between dectin-1 and β-glucans. These combined structural and biophysical data considerably extend the current knowledge of dectin-1 structure and function, and suggest potential mechanisms of defense against fungal pathogens. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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33. Disruption of α-mannosidase processing induces non-canonical hybrid-type glycosylation
- Author
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Crispin, Max, Aricescu, A. Radu, Chang, Veronica T., Jones, E. Yvonne, Stuart, David I., Dwek, Raymond A., Davis, Simon J., and Harvey, David J.
- Subjects
NUCLEAR magnetic resonance ,SCISSION (Chemistry) ,MASS spectrometry ,MAGNETIC resonance - Abstract
Abstract: Golgi α-mannosidase II is essential for the efficient formation of complex-type glycosylation. Here, we demonstrate that the disruption of Golgi α-mannosidase II activity by swainsonine in human embryonic kidney cells is capable of inducing a novel class of hybrid-type glycosylation containing a partially processed mannose moiety. The discovery of ‘Man
6 -based’ hybrid-type glycans reveals a broader in vivo specificity of N-acetylglucosaminyltransferase I, further defines the arm-specific tolerance of core α1-6 fucosyltransferase to terminal α1-2 mannose residues, and suggests that disruption of Golgi α-mannosidase II activity is capable of inducing potentially ‘non-self’ structures. [Copyright &y& Elsevier]- Published
- 2007
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34. Humidity control as a strategy for lattice optimization applied to crystals of HLA-A*1101 complexed with variant peptides from dengue virus.
- Author
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Chotiyarnwong, Pojchong, Stewart-Jones, Guillaume B., Tarry, Michael J., Dejnirattisai, Wanwisa, Siebold, Christian, Koch, Michael, Stuart, David I., Harlos, Karl, Malasit, Prida, Screaton, Gavin, Mongkolsapaya, Juthathip, and Jones, E. Yvonne
- Subjects
CRYSTALS ,EPITOPES ,PEPTIDES ,PROTEIN analysis ,IMMUNE response ,DENGUE viruses - Abstract
T-cell recognition of the antigenic peptides presented by MHC class I molecules normally triggers protective immune responses, but can result in immune enhancement of disease. Cross-reactive T-cell responses may underlie immunopathology in dengue haemorrhagic fever. To analyze these effects at the molecular level, the functional MHC class I molecule HLA-A*1101 was crystallized bound to six naturally occurring peptide variants from the dengue virus NS3 protein. The crystals contained high levels of solvent and required optimization of the cryoprotectant and dehydration protocols for each complex to yield well ordered diffraction, a process that was facilitated by the use of a free-mounting system. [ABSTRACT FROM AUTHOR]
- Published
- 2007
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35. Personal view: a potential novel treatment for fatigue complicating chronic liver disease – how should its efficacy be evaluated?
- Author
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JONES, E. A.
- Subjects
- *
LIVER diseases , *SEROTONINERGIC mechanisms , *SEROTONIN antagonists , *FATIGUE (Physiology) , *CLINICAL trials - Abstract
Profound fatigue is a clinically significant complication of chronic liver disease. A mechanism of fatigue in experimental animals and male athletes appears to be increased serotoninergic neurotransmission in the brain. Recently, attempts have been made to assess the efficacy of a serotonin antagonist, specifically the 5-HT3 receptor subtype antagonist, ondansetron, in ameliorating fatigue in patients with chronic liver disease. However, the results of a randomized controlled trial of ondansetron for fatigue in patients with primary biliary cirrhosis did not indicate that ondansetron was either effective or ineffective. The reasons for the uncertain outcome of the randomized controlled trial are not clear. One contributing factor may have been the use of subjective indices of fatigue as primary efficacy endpoints. There is a need to develop objective quantitative primary efficacy endpoints for use in trials of therapy for fatigue. Another contributing factor may relate to the conduct of a randomized controlled trial not invariably being the optimal approach to resolve a specific clinical issue, particularly when the application of statistical methods yields equivocal findings. When the results of a randomized controlled trial are indecisive, findings based on clinical judgement, medicine's most important asset, should be carefully evaluated. [ABSTRACT FROM AUTHOR]
- Published
- 2006
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36. Effect of inoculum type and timing of application ofConiothyrium minitansonSclerotinia sclerotiorum: control of sclerotinia disease in glasshouse lettuce.
- Author
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Jones, E. E., Mead, A., and Whipps, J. M.
- Subjects
- *
LETTUCE diseases & pests , *SCLEROTINIA sclerotiorum , *SCLEROTINIA , *SCLEROTINIACEAE , *AGRICULTURAL pests , *PLANT diseases - Abstract
The effects ofConiothyrium minitansinoculum quality and an 8-week interval between inoculum application and crop planting on sclerotinia (Sclerotinia sclerotiorum) disease in three successive lettuce crops were investigated in a glasshouse trial. Spore suspensions of three isolates ofC. minitans(Conio, IVT1 and Contans) applied at 108 CFU m−2 and a standard Conio maizemeal–perlite application (06 L m−2, 1011 CFU m−2) were assessed for their ability to controlS. sclerotiorum. Only the maizemeal–perlite inoculum (isolate Conio) consistently reduced sclerotinia disease. In the third lettuce crop only, isolates IVT1 and Contans formulated by Prophyta and isolate IVT as an oil–water formulation, all applied as spore suspensions, reduced disease at harvest compared with the untreated control. Recovery, viability andC. minitansinfection of sclerotia buried during the 8-week period prior to each of the three lettuce crops, and of sclerotia formed on the crop, were tested. Only the maizemeal–perlite inoculum (isolate Conio) reduced the recovery of sclerotia buried in soil for weeks between inoculum application and crop planting, reducing their viability and increasing infection byC. minitans. Eight weeks was sufficient to enableC. minitansto infect sclerotia ofS. sclerotiorum, and may account for disease control. After harvest of the second and third crops, maizemeal–perlite treatment (isolate Conio) reduced the number and viability of sclerotia recovered on the soil surface and increased infection byC. minitanscompared with spore-suspension treatments. The effect of inoculum concentration and the influence of soil temperature (varying with time of year) on infection of sclerotia byC. minitansare discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2004
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37. Effect of inoculum type and timing of application ofConiothyrium minitansonSclerotinia sclerotiorum: influence on apothecial production.
- Author
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Jones, E. E., Clarkson, J. P., Mead, A., and Whipps, J. M.
- Subjects
- *
PHYTOPATHOGENIC microorganisms , *SCLEROTINIA sclerotiorum , *SCLEROTINIA , *PLANT physiology , *PLANT diseases - Abstract
The effects of different inocula of the mycoparasiteConiothyrium minitanson carpogenic germination of sclerotia ofSclerotinia sclerotiorumat different times of year were assessed. A series of three glasshouse box bioassays was used to compare the effect of five spore-suspension inocula ofC. minitans, including three different isolates (Conio, IVT1 and Contans), with a standard maizemeal–perlite inoculum. Apothecial production, as well as viability andC. minitansinfection ofS. sclerotiorumsclerotia buried in treated soil, were assessed. Maizemeal–perlite inoculum at 107 CFU per cm3 soil reduced sclerotial germination and apothecial production in all three box bioassays, decreasing sclerotial recovery and viability in the second bioassay and increasingC. minitansinfection of sclerotia in the first bioassay. Spore-suspension inocula applied at a lower concentration (104 CFU per cm3 soil) were inconsistent in their effects on sclerotial germination in the three box bioassays. Temperature was an important factor influencing apothecial production. Sclerotial germination was delayed or inhibited when bioassays were made in the summer. High temperatures also inhibited infection of sclerotia byC. minitans.Coniothyrium minitanssurvived these high temperatures, however, and infected the sclerotia once the temperature decreased to a lower level. Inoculum level ofC. minitanswas an important factor in reducing apothecial production by sclerotia. The effects of temperature on both carpogenic germination of sclerotia and parasitism of sclerotia byC. minitansare discussed. [ABSTRACT FROM AUTHOR]
- Published
- 2004
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38. A Non-Isothermal Finite Element Model for Injection Stretch-Blow Molding of PET Bottles With Parametric Studies.
- Author
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Yang, Z. J., Harkins-Jones, E., Menary, G. H., and Armstrong, C. G.
- Subjects
FINITE element method ,HEAT transfer ,POLYETHYLENE terephthalate ,INJECTION molding of plastics ,CHEMICAL molding ,BOTTLES - Abstract
Focuses on the presentation of a non-isothermal finite element model for the injection stretch-blow molding process of polyethylene terepthalate bottles. Constitutive behavior of polyethylene terepthalate; Heat transfer between the stretch rod, the preform and the mold; Prediction of the bottle thickness and material distributions.
- Published
- 2004
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39. Processing Characteristics and Mechanical Properties of Metallocene Catalyzed Linear Low-Density Polyethylene Foams for Rotational Molding.
- Author
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Archer, E., Harkin-Jones, E., Kearns, M.P., and Fatnes, A.-M.
- Subjects
METALLOCENES ,ORGANOMETALLIC compounds ,POLYETHYLENE ,ETHYLENE ,THERMOPLASTICS ,POLYMERS - Abstract
Assesses the suitability of metallocene catalyzed linear low-density polyethylenes for the rotational molding of foams and to link the material and processing conditions to cell morphology and part mechanical properties. Identification of the significant processing and physical material parameters that optimize metallocene catalyzed linear low-density polyethylene foam structure; Analysis of pertinent topics and relevant issues; Implications on polymer engineering and science.
- Published
- 2004
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40. Economic commodity or environmental crisis? An interdisciplinary approach to analysing the bushmeat trade in central and west Africa.
- Author
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Bowen-Jones, E., Brown, D., and Robinson, E.J.Z.
- Subjects
- *
MEAT industry , *COMMERCIAL products - Abstract
Bushmeat is a large but largely invisible contributor to the economies of west and central African countries. Yet the trade is currently unsustainable. Hunting is reducing wildlife populations, driving more vulnerable species to local and regional extinction, and threatening biodiversity. This paper uses a commodity chain approach to explore the bushmeat trade and to demonstrate why an interdisciplinary approach is required if the trade is to be sustainable in the future. [ABSTRACT FROM AUTHOR]
- Published
- 2003
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- View/download PDF
41. SSR-based genetic linkage analysis of resistance to crown rust ( Puccinia coronata f. sp. lolii) in perennial ryegrass ( Lolium perenne).
- Author
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Dumsday, J. L., Smith, K. F., Forster, J. W., and Jones, E. S.
- Subjects
PATHOGENIC microorganisms ,RYEGRASSES ,GENETICS ,PHENOTYPES - Abstract
Crown rust (caused by Puccinia coronata f. sp. lolii) is a serious foliar disease of the pasture and turfgrass perennial ryegrass ( Lolium perenne). Previous genetic studies have detected both qualitative and quantitative resistance mechanisms, and interpretation of the genetic system is complicated by variation within the sexually reproducing pathogen. Resistant and susceptible parental genotypes of ryegrass were identified using a composite urediniospore population collected from three geographically distinct locations. A two-way pseudo-testcross mapping population was obtained as the F
1 progeny of the pair-cross between ryegrass parental genotypes Vedette6 and Victorian9 . Both parents showed intermediate resistance against a pathogen population collected in a single geographical zone (Hamilton, Victoria), but in the F1 population, significant variation for a range of resistance-associated characters was detected. Statistical analysis of phenotypic data suggested a major gene effect, hence bulked segregant analysis with map-assigned simple sequence repeat (SSR) markers was used to scan the genome. A marker showing strong association with resistance was assigned to linkage group (LG) 2 of perennial ryegrass. Analysis of 11 LG2 SSR markers defined an interval between loci xlpssrh03f03 and xlpssrk02e02 as containing the gene or genes ( LpPc1) conferring crown rust resistance. Resistance gene determinants were inherited from both parents, with up to 80% of the total phenotypic variation explained by markers segregating from Vedette6 and up to 26% of the variation explained by markers segregating from Victorian9 . The two contributions together resulted in an additive increase in effect, with fully resistant individuals requiring determinants from both parents. A conserved syntenic relationship was observed with linkage group B of Avena strigosa, which is the location of a cluster of resistance genes to the oat form of crown rust. The implications of this study for marker-assisted selection of disease resistance in perennial ryegrass are discussed. [ABSTRACT FROM AUTHOR]- Published
- 2003
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42. Is there an optimal therapeutic regimen for antimitochondrial antibody-negative primary biliary cirrhosis (autoimmune cholangitis)?
- Author
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Gisbert, J. P., Jones, E. A., Pajares, J. M., and Moreno‐Otero, R.
- Subjects
- *
CIRRHOSIS of the liver , *THERAPEUTICS - Abstract
Summary Testing for antimitochondrial antibodies is the most useful laboratory procedure in the diagnosis of primary biliary cirrhosis; nevertheless, 5–10% of patients with typical features of primary biliary cirrhosis do not have detectable antimitochondrial antibodies, their condition being referred to as antimitochondrial antibody-negative primary biliary cirrhosis or ‘autoimmune cholangitis’. Uncertainty exists whether antimitochondrial antibody-positive and -negative primary biliary cirrhosis represent distinct entities. We reviewed studies that compared: (i) the clinical, laboratory and histological characteristics of antimitochondrial antibody-positive and -negative primary biliary cirrhosis; (ii) the response to treatment of both conditions; and (iii) the response of autoimmune cholangitis to ursodeoxycholic acid and immunosuppressive therapy. Antimitochondrial antibody-positive and -negative primary biliary cirrhosis were characterized by similar clinical, laboratory and histological abnormalities, clinical course and survival. Antimitochondrial antibody status did not seem to affect the response to ursodeoxycholic acid. At present, the efficacy of therapies for autoimmune cholangitis has not been established in controlled trials. Of 52 patients with autoimmune cholangitis treated with ursodeoxycholic acid in 13 uncontrolled studies, 83% had serum biochemical improvement. Also, a favourable effect of immunosuppressive drugs occurred in 57% of 54 patients with autoimmune cholangitis in 17 uncontrolled studies. Each of these trials included very few patients and most evaluated the effects of treatment on surrogate markers of disease only. No marker that consistently distinguished patients who would respond favourably to ursodeoxycholic acid or immunosuppression was apparent. Consequently, treatment is, at present, empirical. However, ursodeoxycholic acid may be given when histology reveals bile duct lesions, whereas immunosuppressive... [ABSTRACT FROM AUTHOR]
- Published
- 2003
- Full Text
- View/download PDF
43. Knowledge Management: A New Frontier in the Global Food System: Knowledge Management and Comparative International Strategies on Vertical Information Flow in the Global Food System.
- Author
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Bailey, D., Jones, E., and Dickinson, D.L.
- Subjects
FOOD industry ,KNOWLEDGE management - Abstract
Discusses knowledge management and comparative international strategies on vertical information flow in the global food system. Role of brands in supply chain effectiveness; Public sector's stake in supply chain governance; Food regulation.
- Published
- 2002
- Full Text
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44. Inoculation of pearl millet with the downy mildew pathogen, Sclerospora graminicola: chilling inoculum to delay zoospore release and avoid spray damage to zoospores.
- Author
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Jones, E. S., Breese, W. A., and Shaw, D. S.
- Subjects
- *
PEARL millet , *ZOOSPORES , *DOWNY mildew diseases , *DISEASE resistance of plants - Abstract
Inoculation of plants by spraying with a suspension of zoospores (released from sporangia of Sclerospora graminicola) induced immediate encystment of the zoospores and drastically reduced their ability to cause disease. The incidence of infection in spray-inoculated pearl millet seedlings was reduced from 90% when sporangia were sprayed, to less than 30% when zoospores were sprayed. Rapid encystment was observed when zoospores were sprayed from both a hand-pumped sprayer and a compressed-gas sprayer and was probably caused by shearing forces. Chilling suspensions of sporangia prior to spraying delayed zoospore release and was an effective method for maintaining infection potential. Disease incidence was higher when sporangia were chilled to 0·2°C rather than to 4°C. Chilling resulted in some abnormal zoospore structures being released from sporangia when suspensions were returned to 20°C. The frequency of these structures increased with increasing chilling time. For seedlings sprayed with sporangia before zoospore release, a small reduction in disease incidence was observed when chilled inoculum was used, probably due to cold disruption of zoosporogenesis. For large-scale disease resistance screening, this reduction is outweighed by the benefit of a uniform and adequately high disease pressure that can be obtained over many hours using chilled spore suspensions. [ABSTRACT FROM AUTHOR]
- Published
- 2001
- Full Text
- View/download PDF
45. The importance of sand albedo for the thermal conditions on sea turtle nesting beaches.
- Author
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Hays, G. C., Ashworth, J. S., Barnsley, M. J., Broderick, A. C., Emery, D. R., Godley, B. J., Henwood, A., and Jones, E. L.
- Subjects
ECOLOGICAL research ,SURFACE of the earth -- Optical properties ,REPTILES ,SEA turtles ,GREEN turtle ,ALBEDO ,HABITATS - Abstract
At Ascension Island and Cyprus, major nesting areas for green turtles (Chelonia mydas ) in the Atlantic and Mediterranean, respectively, visual inspection shows some beaches are light in colour while others are darker. We objectively measured the albedo of the sand on different beaches, i.e. the percentage of the incident solar radiation that was reflected from the sand surface. At sites where albedo was recorded, we also measured the temperature of the sand at nest depths. At both rookeries, the sand temperature was markedly higher on darker beaches due to greater absorption of the incident solar radiation over the diurnal cycle. Temperature loggers buried at nest depths revealed seasonal changes in temperature on both islands, but showed that the lowest temperatures found on the darker beaches rarely dropped below the highest temperatures on the lighter beaches. Sea turtles exhibit temperature-dependent sex determination. Since sand albedo is a major avenue for the production of a range of incubation temperatures on both islands, it will also have profound implications for hatchling sex ratios. In comparison with both Ascension Island and Cyprus, for samples collected from sea turtle rookeries around the world there was an even greater range in sand albedo values. This suggests that sand albedo, a factor that has previously received little consideration, will have profound implications for nest temperatures, and hence hatchling sex ratios, for other populations and species. [ABSTRACT FROM AUTHOR]
- Published
- 2001
- Full Text
- View/download PDF
46. Neurodevelopmental profile of a new dysmorphic syndrome associated with submicroscopic partial deletion of 1p36.3.
- Author
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Knight-Jones, Eve, Knight, Samantha, Heussler, Helen, Regan, Regina, Flint, Jonathan, Martin, Katherine, Knight-Jones, E, Knight, S, Heussler, H, Regan, R, Flint, J, and Martin, K
- Published
- 2000
- Full Text
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47. The biogeographical distribution of microfungi associated with three palm species from tropical and temperate habitats.
- Author
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Taylor, J. E., Hyde, K. D., and Jones, E. B. G.
- Subjects
MICROFUNGI ,PHYTOGEOGRAPHY ,BIOGEOGRAPHY - Abstract
Abstract The microfungi of three palm species were investigated in their natural habitats and in habitats where the palms were cultivated outside their natural ranges. The palms that were selected differed in their habitats and ecology. Archontophoenix alexandrae is endemic to tropical rainforests in Australia, Cocos nucifera is pan-tropical and Trachycarpus fortunei occurs in warm-temperate China. Different assemblages of fungi were found in association with palms in temperate regions as compared to those in tropical regions. These differences were more related to climatic influences than to the hosts sampled, as few fungi were host-species specific. The status of the hosts at the site, i.e. indigenous or introduced, and the degree of disturbance of the habitats within which the palms grew were also influential. When sampled in its natural habitat, Archontophoenix alexandrae had a distinct palmicolous mycota typical of other palms in tropical rainforests. Outside of the palm’s natural habitat, a widely different mycota were recorded that comprised tropical species of a more plurivorous nature. A similar plurivorous assemblage characterized the fungi associated with Cocos nucifera, probably due to the palm’s long history of cultivation. Similarly, plurivorous, but temperate or widespread fungi were associated with Trachycarpus fortunei, both within and outside of its natural habitat. This palm is also highly cultivated. A reduction in palm fungi associated with palms in disturbed habitats has implications for conservation of these fungi. However, it is acknowledged that the data for fungal diversity and distribution is incomplete and fragmentary. [ABSTRACT FROM AUTHOR]
- Published
- 2000
- Full Text
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48. Impact of compressed sensing on clinically relevant metrics for ambulatory ECG monitoring.
- Author
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Craven, D., McGinley, B., Kilmartin, L., Glavin, M., and Jones, E.
- Abstract
Recent research has examined the combination of compressed sensing with over‐complete dictionaries for the lossy compression of electrocardiogram (ECG) signals. The application of dictionary learning to automatically create the dictionary is described. A novel analysis of the reconstructed signals using a range of clinical metrics based around QRS feature extraction and heart rate variability is employed. Two methods for dictionary creation are proposed: patient specific and patient agnostic. A detailed comparison of each approach is described. Considering ambulatory ECG monitoring as an application, each methodology is analysed for a wide range of compression ratios. [ABSTRACT FROM AUTHOR]
- Published
- 2015
- Full Text
- View/download PDF
49. Effects of Riparian Forest Removal on Fish Assemblages in Southern Appalachian Streams.
- Author
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Jones, E. B. Dale, Helfman, Gene S., Harper, Joshua O., and Bolstad, Paul V.
- Subjects
- *
RIPARIAN forests , *FISHES - Abstract
Deforestation of riparian zones is known to influence the numbers and kinds of organisms that inhabit adjoining streams, but little quantitative information is available on how much deforestation must occur before the biota isaffected. We sampled fishes and stream habitats in 12 stream segments downstream from deforested but vegetated riparian patches 0–5.3 km long, all downslope from watersheds with at least 95% forest cover. We found an overall decrease in fish abundance with increasing length of nonforested riparian patch; sculpins, benthic minnows, and darters decreased, and sunfishes and water-column minnows increased in numbers. Introduced species were more common downstream from longer riparian patches. Habitat diversity decreased and riffles became filled with fine sediments as upstream patch length increased. Length of upstream nonforested patch and substrate particle size were much stronger predictors of fish occurrence than riparian patch width. Faunal characteristics and physical features of the stream changed in direct proportion to the gradient of riparian disturbance, but the abundance of several species underwent pronounced change at particular threshold patch lengths. These results suggest that riparian forest removal leads to shifts in the structure of stream fish assemblages due to (1) decreases in fish species that do not guard hidden eggs or that are dependent on swift, shallow water that flows over relatively sediment-free substrates, or (2) increases in fishes that guard their young in pebble or pit nests or that live in slower, deeper water. When watershed development is anticipated or planned, limited clearing of riparian trees may cause minor disturbance to the fish assemblage, but streams in even a heavily forested watershed with vegetated riparian buffers cannot tolerate disruption of riparian-zone trees over much more than 1 km in length. Riparian buffer length and area should be given stronger consideration in stream... [ABSTRACT FROM AUTHOR]
- Published
- 1999
- Full Text
- View/download PDF
50. Endophytic fungi associated with the temperate palm, <em>Trachycarpus fortunei</em>, within and outside its natural geographic range.
- Author
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Taylor, J. E., Hyde, K. D., and Jones, E. B. G.
- Subjects
ENDOPHYTIC fungi ,PALMS ,GLOMERELLA cingulata ,PLANT species ,PLANT diversity ,MEDICAL climatology - Abstract
Fungal endophytes associated with the palm, Trachycarpus fortunei, within and outside its natural geographic range were investigated. Endophytes were relatively common with colonization rates of 23-57% at the four sites sampled. The endophyte assemblages at the different sites were diverse with 75 fertile species of ascomycetes and mitosporic fungi. The assemblage composition at each site was similar and between seven and 13 species comprised 81 89% of the taxa present in relative frequencies of > 1% Glomerella cingulata and Phomopsis spp., were consistently dominant, and a large number of rare species were recorded. The diversity at each site was similar in number, but the abundance of isolates varied. The results obtained were comparable to those of previous studies of palm endophyte assemblages, but the assemblages showed more affinity with unrelated temperate hosts than with tropical palm hosts. Quantitative and qualitative differences in endophyte assemblages from old and young tissues were observed, and more isolates were recovered from old tissues independent of the age of the palm. The composition of the assemblage varied with several taxa being exclusively or more commonly isolated from old tissues (e.g. xylariaceous taxa, Oxydothis sp. nov. or young tissues (e.g. Stagonospora spp., Phoma multirostrata). Some differences in the composition of the assemblage and in relative frequencies of various species were observed in trees and saplings. Significantly more isolates were recovered from the vein than intervein tissues, independent of leaf age or tree age. Tissue specificity was not exhibited by any taxa isolated from either leaf or petiole tissues, except for xylariaceous taxa in leaf tissues. Some other taxa showed a preference for leaf tissues or petioles, whereas others were equally distributed amongst all tissues. Endophyte assemblages of palms from continuous distributions were similar, but those from disjunct distributions (i.e. outside the natural geographic range of the palm, such as Australia and Switzerland), differed significantly from each other and from assemblages within continuous distributions. The relative importance values of endophyte species at the two sites in China indicates the site-specific nature of the endophyte assemblages. Most previous studies on the endophytes of palm hosts have concentrated on tropical palms. However, this study examines the endophytes of the warm temperate palm Trachycarpus fortunei, and investigates the relative importance of host and climate related processes. [ABSTRACT FROM AUTHOR]
- Published
- 1999
- Full Text
- View/download PDF
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